LOCUS E.coli 4376 bp RNA RNA ~?~???? DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Organism information Culture collection: ? Phylo:Eubacteria,Purple,gamma,3 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 |--------- ---------- ---------- ---AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(cuu-ga)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---uc ---cgg--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -uucg----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA-|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2-BACTERIA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2 BACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2 BACTERIA. ORGANISM 2 BACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.1-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.1 THERMOPHILIC_OXYGEN_REDUCERS. ACCESSION No information KEYWORDS No information. SOURCE 2.1 THERMOPHILIC_OXYGEN_REDUCERS. ORGANISM 2.1 THERMOPHILIC_OXYGEN_REDUCERS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cld.hgenph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Calderobacterium hydrogenophilum str. Z-829 (T). ACCESSION No information KEYWORDS No information. SOURCE Calderobacterium hydrogenophilum str. Z-829 (T). ORGANISM Calderobacterium hydrogenophilum. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30242|g520631 isolate_name= Z-829 (T) BASE COUNT 335 a 401 c 509 g 246 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGUG-GC (--UC----- ---------- ---------- 241 --------U. .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CC-G--G-GG ---ACC-(-- --------AC 541 UA-A------ -)-GGU---U UC-CG----G AC--CAAA-- ---GGUGGC- CUC-UGC--- 601 --(------- ----UCU--- ---)------ ----GCA-A| -GCUAC--C- G--CCU---- 661 ----GAGG-- AGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CNU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--N-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-GGG( U----GAAUA -----A---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CUGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UUGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCA-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- N-CC-NU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GC-GU-UGU -CC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -GGCAG-UGC 1741 CU--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------G-U ---AGGA--- -NA----CCC 1981 -UUG-C--(- GAAA-)-GCG -A-GGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GNNNN----- ----NA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C A--CUC---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-A(G 2881 -CAA)UGGN- ---------- GA-GCNAA-U CCUCC-AAAC -CC-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-GCC 3121 U-CGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.thphi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter thermophilus str. TK-6 (T). ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter thermophilus str. TK-6 (T). ORGANISM Hydrogenobacter thermophilus. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30214|g520869 isolate_name= TK-6 (T) BASE COUNT 333 a 393 c 510 g 246 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-NN-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGUG-GC (--UC----- ---------- ---------- 241 --------U- -)GC...... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... NGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAA---- ---------- -------G-C CA-G--G--G ---GUC-(-- --------AC 541 AA-A------ -)-GGC---U AC-CU----G GC--CAAA-- ---GGGGGC- CUC-UGC--- 601 --(------- ----UCU--- ---)------ ----GCA-U| -GCUCC--C- G--CCU---- 661 ----GAGG-- AGG---G-|G CUCGC----- -GG|----CC N--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CNG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--N NNG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCN-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-AGG( C----GAAUA -----G---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CUGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUUA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UUGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCA-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GC-GU-UGU -CC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -GGCAG-UGC 1741 CU--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GN-UUG ACA-UG|--- -------G-U ---GGGA--- -AA----CCC 1981 -UUG-C--(- GAAA-)-GCN -N-GGGGUG- CC-------- GUCNU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GNNNN----- ----NA---| UCC-NA-NCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-U A--CUC---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CUC-A(G 2881 -UAA)UGAG- ---------- GA-GCAAA-U CCUAU-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-NCC 3121 U-CGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-U-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.thphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter thermophilus str. T3. ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter thermophilus str. T3. ORGANISM Hydrogenobacter thermophilus. REFERENCE 1 AUTHORS Pitulle,C., Yang,Y., Marchiani,M., Moore,E.R.B., Siefert,J.L ., Aragno,M., Jurtshuk,P. Jr. and Fox,G.E. TITLE Phylogenetic position of the genus Hydrogenobacter JOURNAL Int. J. Syst. Bacteriol. 44, 620-626 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30189|g520881 isolate_name= T3 BASE COUNT 341 a 400 c 505 g 246 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGGUG-CC (--UU----- ---------- ---------- 241 --------UU -)G....... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CA-G--U--C ---ACC-(-- --------AC 541 UA-A------ -)-GGU---G -G-CU----G AC--CAAA-- ---GGUGGC- CUC-UNC--- 601 --(------- ----UCU--- ---)------ ----GCA-U| -NCUAC--C- G--CCU---- 661 ----GAGG-- ANG---G-|G CUCNC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-AG-GG 1021 --GG-GAA-- GA-UGCU-CA --CAG-AGG( U----GAAUA -----A---) UCUC-UG-UG 1081 ---------- -------G-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-UG- 1261 G-GU-AAG|C GGU---UCGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAA- 1321 -GGCG-UACC G-AAC-UGCC C-AUCUU-GA GGC-----AC G-CU-CAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UU CUGACG-GUC AG-N------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -AC-GU-CGU -CC------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------G -GGCGG-UGU 1741 CU--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------A-U ---GGGA--- -AA----CCU 1981 -CUG-C--(- GAAA-)-GCG -G-AGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GANNN----- ----AA---| UCC-CA-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C A--CUC---- ---------- ---------- ----(---UA ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 G-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-A(G 2881 -AAA)UGGG- ---------- GA-GCAAA-U CCU-C-AAAC -CC-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAG)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-NCC 3121 U-CGG-N-NU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-AG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_17 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 17. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 17. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05661|g454800 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 17 BASE COUNT 323 a 403 c 514 g 239 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGGG-GU (--GA----- ---------- ---------- 241 -------UGA -)GC-UCCUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -GGAA-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--C UAAUACC-CU 481 AU-AUA---- ---------- -------G-C CG-G--G--G ---ACC-(-- --------AC 541 UA-A------ -)-GGU---C AC-CC----G GU--GAAA-- ---GGUGGC- CUC-UGCCC- 601 --(------- ---UUUAU-- ---)------ --GGGCA-U| -GCUAC--C- G--CCC---- 661 ----AGGG-- AGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA -)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGUG-UC --UUG-GGG( U----GAAUA -----A---) UCCC-AG-GA 1081 ---------- -------C-A C-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAUUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GA-CG- 1261 G-GU-AAG|C GGU---GCGU C-AAA-GC-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCG-UACC G-AAC-UGCC C-GUCUU-GA GGC-----AC G-CU-UAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 AGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------U|G -GC-GU-CGU -C-------- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- ---------- -GGCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCC C|C|G-CCU- G-GGG-GUAC 1801 GG------(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC CGG-GU-UUG ACA-UG|--- -------G-U ---GGGA--- -AA----CCC 1981 -UUG-C--(- GAAA-)-GCG -A-GGGGUG- CC-------- GUCCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G --)------- GACGG----- ----AA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-UA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-C-AG -GA--CAAUG GGA-U-G-C- GA-CCC-A(G 2881 -UAA)UGGG- ---------- GA-GCAAA-U CCCCC-AAAC -CU-G-GUC- AUGGUGCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GGA-(UC -AGCUAA)-G CCG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CAG- UC-UU-CCCG -GAA-G-GCC 3121 C-CAA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GG-GA-CG A-UGGG-AAG GCU-GG-CA- ACU-GGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.aeolic.1 4376 bp RNA RNA 30-OCT-1997 DEFINITION Aquifex aeolicus.; . ACCESSION AE0007 1 AE00 657 KEYWORDS . SOURCE Aquifex aeolicus. ORGANISM Aquifex aeolicus. REFERENCE 1 (bases 1 to 13534) AUTHORS ., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V . Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L TITLE Aquifex aeolicus The complete genome of the hyperthermophilic bacterium JOURNAL Nature 392 (6674), 353-358 (1998) STANDARD No information REFERENCE 2 (bases 1 to 13534) AUTHORS Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) Diversa Corporation, Genomics, San Diego, CA 92121 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000751 Putative indicates no similarity to known proteins Hypothetical indicates similarity to a protein of unknown function. BASE COUNT 316 a 470 c 565 g 244 t 2781 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~gccu aUUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G GUCGGCC-CC (--UU----- ---------- ---------- 241 -------UUG -)GG-GCCGG CC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAU---- ---------- -------G-C CA-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G CG-GU----G GC--CAAA-- ---GGGGGC- CUC-UGGCC- 601 --(------- ----UUC--- ---)------ --GGCCA-C| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGCG-GA --CAC-GGG( U----UAAUA -----G---) CCCG-UG-UC 1081 ---------- -------C-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-ACC- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(cc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u ag)------- GACUU----- ----UC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCC- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-GGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-U-G-C- GA-CCC-C(G 2881 -UAA)GGGG- ---------- GA-GCUAA-U CCC-u-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCU CC-------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----GGAGC CGGAGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UAA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.aeolic.2 4376 bp RNA RNA 30-OCT-1997 DEFINITION Aquifex aeolicus.; . ACCESSION AE0007 9 AE00 657 KEYWORDS . SOURCE Aquifex aeolicus. ORGANISM Aquifex aeolicus. REFERENCE 1 (bases 1 to 15737) AUTHORS . Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L ., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V TITLE Aquifex aeolicus The complete genome of the hyperthermophilic bacterium JOURNAL Nature 392 (6674), 353-358 (1998) STANDARD No information REFERENCE 2 (bases 1 to 15737) AUTHORS Deckert,G., Warren,P.V., Gaasterland,T., Young,W.G., Lenox,A.L., Graham,D.E., Overbeek,R., Snead,M.A., Keller,M., Aujay,M., Huber,R., Feldman,R.A., Short,J.M., Olson,G.J. and Swanson,R.V. TITLE Direct Submission JOURNAL Submitted (25-JUL-1997) Diversa Corporation, Genomics, San Diego, CA 92121 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000709 Putative indicates no similarity to known proteins Hypothetical indicates similarity to a protein of unknown function. BASE COUNT 313 a 468 c 564 g 242 t 2789 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G GUCGGCC-CC (--UU----- ---------- ---------- 241 -------UUG -)GG-GCCGG CC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAU---- ---------- -------G-C CA-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G CG-GU----G GC--CAAA-- ---GGGGGC- CUC-UGGCC- 601 --(------- ----UUC--- ---)------ --GGCCA-C| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-UGCG-GA --CAC-GGG( U----UAAUA -----G---) CCCG-UG-UC 1081 ---------- -------C-G U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-ACC- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(cc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u ag)------- GACUU----- ----UC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCC- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-GGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-U-G-C- GA-CCC-C(G 2881 -UAA)GGGG- ---------- GA-GCUAA-U CCC-u-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCU CC-------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----GGAGC CGGAGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aqu.pyroph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aquifex pyrophilus str. Kol5a. ACCESSION No information KEYWORDS No information. SOURCE Aquifex pyrophilus str. Kol5a. ORGANISM Aquifex pyrophilus. REFERENCE 1 AUTHORS Burggraf,S., Olsen,G.J., Stetter,K.O. and Woese,C.R. TITLE A phylogenetic analysis of Aquifex pyrophilus JOURNAL Syst. Appl. Microbiol. 15, 352-356 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83548 isolate_name= Kol5a BASE COUNT 317 a 454 c 561 g 232 t 2812 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUCCCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-CGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G CUCGCUC-CC (--UC----- ---------- ---------- 241 --------U- -)GG-GAGCG GGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|------ AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCC---A -GGAG-G-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-CC 481 AU-AAA---- ---------- -------G-C CG-C--C--C ---GCC-(-- --------AC 541 UA-A------ -)-GGC---G AG-GC----G GC--CAAA-- ---GGGGGC- CUC-UGGGC- 601 --(------- ----UCU--- ---)------ --GCCCA-A| -GCUCC--C- G--CCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCC|-GCGA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-C CC(--UG-CG --)GG-GUGU AAA--CCCC| UGUC-GG-GG 1021 --GG-GAC-- GA-AGGG-AC --UGU-GGG( U----UAAUA -----G---) CCCA-CA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAAGUCA -CU-GGGC|G UAAA-GCGU- CCG-CAG-CC -G|-GU-CG- 1261 G-GU-AAG|C GGG---AUGU C-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -GGCA-UCCC G-AAC-UGCC C-GACUU-GA GGC-----AC G-CC-CGGGC AGG-C|GGAA 1381 UU-CCCGGG- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-C UC-GGGAGG- AACA-CCGA- 1441 -A-G-GG(-G AA-G)CCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGC--UG-UC CUGACG-GUC AG-G------ -------GA- C-GAAA-GC- CG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCG- G-CC-GU--A 1621 AAC-C-AUGG G--CG-CU-- -------A|G -GG-CU-UGU -CC-C----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------GG -GGCAG-GCU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UCAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---GGGG--- -AG----ACU 1981 -CCG-C--(- GAAA-)-GCG -G-AGUUGU- GG-------- AAGUC----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GACUU----- ----CC---| CCC-CG-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-U AC-CCC---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|A 2701 G-CA-CU-C- U-AGG-GG-G A-CC-G-CCG --GC(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CC -CG--GGGC- 2821 C-ACA-CA-G GCG--CUACA GUGGC-C-GG -GA--CAAUG GGA-A-G-C- GA-CCC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAC -CC-G-GUC- AUGGUGCGGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGC-CG -GAAU-CGG- -UAGUA-ACG 3001 GG-GUA-(UC -AGCGAU)-G UCC-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GU-CGG- UC-CG-GCCG -GAA-G-UCC 3121 C-CGA-G-CU -AA-CCGGCC C--------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ------GGGC CGGGGG-C-A G-GG-GC-CG A-UGGC-CGG GCC-GG-CG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hdg.acidp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hydrogenobacter acidophilus str. 3H-1. ACCESSION No information KEYWORDS No information. SOURCE Hydrogenobacter acidophilus str. 3H-1. ORGANISM Hydrogenobacter acidophilus. REFERENCE 1 AUTHORS Shima,S., Yanagi,M. and Saiki,H. TITLE The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis JOURNAL FEMS Microbiol. Lett. 119, 119-122 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16296|g505079 isolate_name= 3H-1 BASE COUNT 353 a 339 c 443 g 297 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-CGC -GAAC-GC-- UGNC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAGUG-GG (--GC----- ---------- ---------- 241 --------AA -)CU-CACUU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAA- UAA--CCU-G C-CUUU---G -AGAA-G-GG 421 -GAU-AA-CU G--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-CU 481 AU-AAU---- ---------- -------G-U CC-U--U--U ---GUC-(-- --------AC 541 UA-A------ -)-GAC---A -A-AG----G AU--GAAA-- ---GCGAGGC U--------- 601 --(------- ---GUUAA-- ---)------ --------A| GGCUUC--G- G--CUC---- 661 ----AAAG-- AGG---G-|G UUCGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GCA-C-CCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUCGU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCCC|-GCAA UGCC-GC-GU 961 G-A-GG-G-A A-GAA--N-N CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUC-AG-AU 1021 --GG-GAA-- GA-UGGG-AC --CAA-GGG( C----UAAUA -----C---) CUCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCA-U-CA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGC GC-GAUGUUA -CU-GGGC|G UAAA-GCGU- CCG-UAG-CU -G|-GU-UU- 1261 C-GU-AAG|C GGA---UUGU C-AAA-AC-C CG-AAG-C(- UC-A)A-CUU -CG-G-CAA- 1321 -GGCA-UUCC G-AAC-UGCG U-UACUU-GA GUC-----CU G-UU-CAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GAC--GG-UA CUGACG-GUC AU-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -GU-GU-AGU -GA------- ---------- 1681 -(UAA-CU)- ---------- ---------- ---------- ---------U -CGCUG-CAC 1741 CC--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC G-U-CU-GGU -UUAAUU-CG -(AUGCUA-A C)--CGAAAA 1921 A-CCUUA-CC AGG-GU-UUG AAA-UG|--- -------G-U ---AGGA--- -AA----GGC 1981 -UGU-C--(- GAAA-)-GAU -A-GCCGUG- ---------U UUCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGGAGA---- ----AA---| UCC-UA-CCA |---C|A--G 2161 GU-GG-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-U UC-CUC---- ---------- ---------- ----(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AGG|U 2701 G-CU-CU-A- U-AAG-GA-G A-CU-G-CCG --GC(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-G CG-ACG--UC -A-GGUC-AG UAU-G-CC-C UUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-G GCG--CUACA GUGGC-A-AG -GA--CAAUG AGU-N-G-C- AA-GAG-C(G 2881 -CGA)CUCA- ---------- GA-GCUAA-U CUCAC-AAAC -CU-U-GUC- GUGGUGCGAA 2941 U-UGAAGGU- (UGAAAC-U- C)-ACCUUCA -UGAAGC-CG -GAAU-CGG- -UAGUA-AUG 3001 GC-GUA-(UC -AGCUAU)-G UCG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CGGA A--GC-UGG- UG-UU-UUCG -GAA-G-UCC 3121 U-CGA-G-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2 THERMOTOGALES. ACCESSION No information KEYWORDS No information. SOURCE 2.2 THERMOTOGALES. ORGANISM 2.2 THERMOTOGALES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.1-GEOT 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.1 GEOTOGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.1 GEOTOGA_GROUP. ORGANISM 2.2.1 GEOTOGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Got.petrae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geotoga petraea str. T5 ATCC 51226. ACCESSION No information KEYWORDS No information. SOURCE Geotoga petraea str. T5 ATCC 51226. ORGANISM Geotoga petraea. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51226 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10658 isolate_name= T5 BASE COUNT 407 a 334 c 482 g 254 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGGAAGA AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GUA|-UC--- AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAU -AC-GUAGG- G-A--CCU-A C-CUCA---C -GGAC-A-GG 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UAAGACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----AAAA-- ---GC----- ---------- 601 --(------- --AGAGNA-- ---)------ ---------| -----G--C- G--CCG---- 661 ----GGAG-- AGG---G-|G CCUNC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-NAA-AG) -C-CUACC-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GAUC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GC-AC-(GGA A)-GUG-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-UA 1021 --CA-GAA-- UA-ACAG-CA --UAA-G--( -----GGWA- ---------) --CU-UA-UG 1081 ---------- -------U-A U-GA-AGGU- A-AGU-A-AG G-AA---AAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GGAAUCA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GU-CU- 1261 C-AA-AAG|U CAG---GUGU G-AAA-UG-U CA-CUG-C(- UC-A)A-CGG -UG-U-CAG- 1321 -UGCG-CAUG A-AAC-UGUG A-GACUU-GA GGG-----GA C-CA-GAGGU AGA-C|GGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A CA-GGUAAG- AACG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUACUG-- ---------- ---------- ---------G 1501 GGU--GA-CC CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CA-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-A----- ---------- 1681 -(AGA-AA)- ---------- ---------- ---------- ---------G -CUCCG-UGC 1741 UG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---AGAC--- -GA----GAG 1981 -GUA-A--(- GAAA-)-CUA -U-CUCAA-- CC-------- UAUAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GUAUA----- ----GG--G| AUC-UC-ACA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-UA--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---GA ---GAG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 C-UA-CA-C- U-AGC-UA-G A-CA-G-CCG --UC(-GA-C GA)-GAC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-AG CGU-G-CC-C CUAAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-G-AG -GG--CAAAA GGC-A-G-C- GA-AGU-C(G 2881 -CGA)GGCA- ---------- GA-GCGAA-U CCAAG-AAAC -CU-C-AUC- GUAAUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAAC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-UGG- AG-AC-ACCU -GAA-AAGGG 3121 A......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... ....GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCNCC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Got.subter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geotoga subterranea str. CC-1 ATCC 51225. ACCESSION No information KEYWORDS No information. SOURCE Geotoga subterranea str. CC-1 ATCC 51225. ORGANISM Geotoga subterranea. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51225 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10659 isolate_name= CC-1 BASE COUNT 420 a 334 c 491 g 283 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGGAAGA AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GUA|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AGA -AC-GUAGG- A-A--CCU-G C-CUAA---C -GGAC-U-GG 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UAAUACU-GG 481 AU-AAA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----AAAA-- ---GCU---- ---------- 601 --(------- ---UAGA--- ---)------ ---------| ----AG--C- G--CCG---- 661 ----GGAG-- AGG---G-|G UCUAC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GUUC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GC-AC-(GGA A)-GUG-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-UA 1021 --CA-GAA-- UA-ACAG-CA --UAA-G--( -----GGGA- ---------) --CU-UA-UG 1081 ---------- -------U-A U-GA-AGGU- A-AGU-A-AG G-AA---AAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GGAAUCA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GU-CU- 1261 C-AU-AAG|U CAG---GUGU G-AAA-UG-U CA-CUG-C(- UC-A)A-CGG -UG-U-CAG- 1321 -UGCG-CAUG A-AAC-UGUG A-GACUU-GA GGG-----UA C-CA-GAGGU AGA-C|AGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A CA-GGUAAG- AAUG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUACUG-- ---------- ---------- ---------G 1501 GGU--GA-CC CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CA-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-A----- ---------- 1681 -(AGA-AA)- ---------- ---------- ---------- ---------G -CUCCG-UGC 1741 UG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---AGAU--- -AA----GGC 1981 -AUA-A--(- GAAA-)-UUA -U-GUCAA-- CC-------- UGUAU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AUAUA----- ----GG--A| GUC-UC-ACA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 C-UA-CU-C- U-AGC-GA-G A-CA-G-CCG --UC(-GA-C GA)-GAC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-AG CGU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-G-AG -GG--CAAAA GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCGAA-U CCUAU-AAAC -CU-C-AUC- GUAAUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAAC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-UGG- AG-AC-ACCU -GAA-AAGGG 3121 A-AGA-A-GU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGGGC-U-A A-UC-UCUUC A-GGGU-GGA GCU-AG-CG- AGG-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGCC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pet.miothr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Petrotoga miotherma str. 42-6 ATCC 51224. ACCESSION No information KEYWORDS No information. SOURCE Petrotoga miotherma str. 42-6 ATCC 51224. ORGANISM Petrotoga miotherma. REFERENCE 1 AUTHORS Davey,M.E., Wood,W.A., Key,R., Nakamura,K. and Stahl,D.A. TITLE Geotoga and petrotoga: Two new genera, representing a new lineage in the bacterial line of descent (distantly related to the Thermotogales) JOURNAL Syst. Appl. Microbiol. 16, 191-200 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51224 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10657 isolate_name= 42-6 BASE COUNT 373 a 274 c 431 g 249 t 3049 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AGGAUNN AGGGUU(U-N A)U-CCU|-N 61 GCUCAG-GGU -AAAC-GC-- UNGC-GGC-G -UGC-GU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GG UUAUACA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGUAU AAUC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -AG-GUAGG- G-A--CCU-A C-CCCG---A -GGAC-A-GA 421 -GAU-AG-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--G UNAACUC-UN 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GUG---- ---------- 601 --(------- ---GGNG--- ---)------ ---------| ----UC--A- G--CCU---- 661 ----UGGG-- AUN---G-|A CCUNC----- -UA|----UC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UYACC-N A|-GCC-GA- UGA------- -----CG-GA 781 U-AA-C-CG| -G-UGU--(G -AGA)-GCAU ----GN-A-- CGG-U|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--CUUC| UGAA-CU-AA 1021 --UC-GAA-- UA-AGNG-GG --UAG-UG-( -----GACA- ---------) -CAC-UA-CA 1081 ---------- -------G-A A-GA-AGGU- A-GAU-U-AG G-AA---AAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GNGN-C-- 1201 NAG-CGUUGC CC-GGAAUCA -CU-GGGU|G UAAA-GGGG- ACG-UAG-GC -G|-GA-UG- 1261 A-UC-AAG|U CAU---CUGU G-AAA-A--- GA-UUG-C(- UC-A)A-CGA -UU-G-GCU- 1321 -UGCG-GAUG A-AAC-UNGU N-NUCUU-GG GCG-----UA G-CA-GAGGU AGA-C|GGAA 1381 UU-ACCUGA- GUA-GGG(-G UGAAA)-UCC -GC-AGAU-A CA-GGUAAG- AAGG-CCGG- 1441 -U-G-AA(-G AA-G)UUGG- -UCUACUG-- ---------- ---------- ---------G 1501 GCU--AC-AG CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-AGG -GA-GC---- ---------- 1681 -(GAA-AG)- ---------- ---------- ---------- -------ACU -CUCUG-UGC 1741 UG--AA---- --GC-(GAA- ---C)G-CG- MUAA-GUGAG C|C|A-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GA-UUG ACA-UG|--- ---------U ---AACU--- -GA----AGG 1981 -UAG-A--(- GAAA-)-UCU -A-CUNG--- CC-------- UG-CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-UN----- ----GG--A| GGU-UA--CA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CA-C- U-AAU-UG-G A-CA-G-CCG --CC(-GA-C GA)-GGC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-AG CGU-G-CN-C CUUAU-A-CU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-G-AG -GA--CAAAG GGA-A-G-C- GA-AGC-C(G 2881 -UNA)GGUG- ---------- GA-GCGGA-U CCGGA-AAAA -CN-N-UCC- GUAAUAUGGA 2941 U-UGUAGGC- (UGAAAC-C- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCCAA)-A CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.2-FERV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.2 FERVIDOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.2 FERVIDOBACTERIUM_GROUP. ORGANISM 2.2.2 FERVIDOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.island 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium islandicum str. H-21 DSM 5733. ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium islandicum str. H-21 DSM 5733. ORGANISM Fervidobacterium islandicum. REFERENCE 1 AUTHORS Huber,R., Woese,C.R., Langworthy,T.A., Kristjansson,J.K. and Stetter,K.O. TITLE Fervidobacterium islandicum sp. nov., a new extremely thermophilic eubacterium belonging to the "Thermotogales" JOURNAL Arch. Microbiol. 154, 105-111 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 5733 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59176 DSM 5733 = ATCC 49647 (T) isolate_name= H-21 BASE COUNT 319 a 368 c 515 g 232 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAGCUUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAG-GC (--UU----- ---------- ---------- 241 --------CG -)NC-CGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--CGU-G C-CCNC---U -GGAG-G-CG 421 -GAU-AG-CC G--------- ------UG-- G(-GAAA-)C -UGCG-G--G UAAACCG-CN 481 AU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAA-- ---GGCC--- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ---GGN--C- G--CCA---- 661 ----GGGG-- AGC---G-|G CCUGC----- -GU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-GU-CN 1021 --GG-GAA-- AA-A------ ---------( -----GGGC- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCC-G-AC G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGN-C-- 1201 NAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CG- 1261 A-GU-GUG|U CUG---GCGU A-AAA-UU-C CA-CGG-C(- UC-A)A-CUG -UG-G-GUA- 1321 -UGCG-CUGG A-AAC-UACU C-GGCUU-GG GUG-----CG G-CA-GAGGC AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUNC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GN-GGG -GG-C----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------GC -CUCCG-UGC 1741 UG--AA---- --GC-(NAA- ---C)G-CG- AUAA-GUGAG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AANCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CC-------- CUGCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAG----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GN-N NA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-CU CGU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACN-CN-C GCG--CUACN AUGGG-G-UG -GA--UAGCG GGA-A-G-C- GA-GGC-A(G 2881 -CGA)UGCU- ---------- GA-GCAAA-A CCCUG-AAAC -CA-C-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGN-CN UUGUA----C 3061 ACACCGCCC- NUC-AAG--- --CCA-CCCG A--GU-CGC- GG-GC-ACCC -GAA-G-ACG 3121 G-U-G----- --A-CCC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG------C G-CC-GU-UG A-GGGN-GAA CGU-GG-UG- AGG-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.gndwns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium gondwanense str. AB39 ACM 5017 (T). ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium gondwanense str. AB39 ACM 5017 (T). ORGANISM Fervidobacterium gondwanense. REFERENCE 1 AUTHORS Andrews,K.T. and Patel,B.K.C. TITLE Fervidobacterium gondwanense sp. nov., a new thermophilic anaerobic bacterium isolated from nonvolcanically heated geothermal waters of the Great Artesian Basin of Australia JOURNAL Int. J. Syst. Bacteriol. 46, 265-269 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49117|g1143453 isolate_name= AB39 BASE COUNT 338 a 375 c 509 g 252 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU GNAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-GGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-GC-GG-U GCGU---AAC -AC-GUAGG- A-A--CGU-G C-CCCC---U -GGAG-G-CG 421 -GAU-AG-CC G--------- ------UG-- G(-GAAA-)C -UGCG-G--G UAAACCG-CC 481 GU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAA-- ---GGCC--- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ---GGU---- G--CCA---- 661 ----GGGG-- AGC---G-|G CCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AUGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-CU-CA 1021 --GG-GAA-- AA-AAGC--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CG- 1261 U-CU-GUG|U CUG---GCGU U-AAA-AU-C CA-CGG-C(- UC-A)A-CUG -UG-G-GUA- 1321 -UGCG-CUGG A-AAC-UGCA C-GGCUU-GG UUG-----CA G-CA-GAGGC AGA-C|GGAA 1381 CU-GCUGUU- GUA-GGG(-U UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACC-CCGG- 1441 -U-G-AA(-G AA-G)UCGG- -UCCUCCU-- ---------- ---------- ---------G 1501 GUC--UG-UA CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 CC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- C-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------U|G -GU-GU-GGG -GG-C----- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- --------GU -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGAC C|C|G-CCU- G-GGGAGUAU 1801 NCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AAGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CUG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CC-------- UUACC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAA----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUCU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-AG-G A-CC-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GUAA-CU CGU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-A-UG -GA--CAGCG GGA-G-G-C- GA-GGC-A(G 2881 -CGA)UGCU- ---------- GA-GCAAA-A CCCAC-AAAC -CA-U-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGU-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-UGN- GG-GN-ACCC -GAA-G-ACG 3121 G-U-G----- --A-CCC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG------C G-CC-GU-UG A-GGGU-GAA CGU-GG-UG- AGG-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fer.nodosm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fervidobacterium nodosum str. Rt 17-B1 ATCC 35602 (T). ACCESSION No information KEYWORDS No information. SOURCE Fervidobacterium nodosum str. Rt 17-B1 ATCC 35602 (T). ORGANISM Fervidobacterium nodosum. REFERENCE 1 AUTHORS Huber,R., Woese,C.R., Langworthy,T.A., Kristjansson,J.K. and Stetter,K.O. TITLE Fervidobacterium islandicum sp. nov., a new extremely thermophilic eubacterium belonging to the "Thermotogales" JOURNAL Arch. Microbiol. 154, 105-111 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35602 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59177 isolate_name= Rt 17-B1 BASE COUNT 326 a 353 c 502 g 242 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUAGCUUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GUGCA GCUGGAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGAAG GCUGCAU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAGG- A-A--CGU-G C-CCCC---U -GGAG-G-CG 421 -GAU-AG-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--G UAAUCCN-NN 481 AU-AGA---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----UAAAG- ---GCC---- ---------- 601 --(------- ---GGAA--- ---)------ ---------| ----GG--C- G--CCA---- 661 ----GGGN-- AGC---N-|G CCNGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-N A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GG-U-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| NUUU-GC-UA 1021 --GG-GAA-- AA-A------ ---------( -----GUAC- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-CCU-A-GC G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-CC- 1261 U-GU-GNG|U CUG---GCGU U-AAA-UA-C CA-CGG-C(- UC-A)A-CUG -UG-G-GAU- 1321 -UGCG-CUGG A-AAC-UGCA G-GGCUU-GG GUG-----CG G-CA-GAGGC AGA-U|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAU-A UC-AGCAGN- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUGCUN-- ---------- ---------- ---------G 1501 GCC--GU-NA CCGACG-CUG AG-G------ -------CA- C-NAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUN-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------A|G -GU-GU-GGG -GC-C----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------GG -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUGAG C|N|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AAGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGGGA-- CG-------- CUACC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAG----- ----UG---| AGC-CA-GCN |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGN-N UG-ACG--UC -A-GAUA-CU CGU-G-CN-C CUUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-G-CG -GA--CAGCG GGA-A-G-C- GA-GCC-A(G 2881 -UGA)UGGU- ---------- GA-GCAAA-A CCCUC-NAAC -CG-U-CCC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-C- C)-GCCCACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-UGC- GG-GC-ACCC -GAA-G-ACG 3121 G-U-A----- --A-UGC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCA------U A-CC-GU-UG A-GGGN-NAA CGU-GG-UG- AGG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.3-THER 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.3 THERMOTOGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.2.3 THERMOTOGA_GROUP. ORGANISM 2.2.3 THERMOTOGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsi.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermosipho africanus str. OB7 DSM 5309. ACCESSION No information KEYWORDS No information. SOURCE Thermosipho africanus str. OB7 DSM 5309. ORGANISM Thermosipho africanus. REFERENCE 1 AUTHORS Stetter,K.O. Huber,R.H., Woese,C.R., Langworthy,T.A., Fricke,H. and TITLE thermophilic eubacteria within the Thermotogales Thermosipho africanus gen. nov., represents a new genus of JOURNAL Syst. Appl. Microbiol. 12, 32-37 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 5309 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83140 isolate_name= OB7 BASE COUNT 318 a 341 c 482 g 236 t 2999 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAUUCAUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--------A AG-------- ---------- ---------- ---------- ---------- 181 ---------- --CUGCUGG- UGGAAUC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GAGGA ANGCCNGUAG ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- CUN|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UGA--CCU-A C-CCCU---C -AGAG-G-GG 421 -GAU-AA-CU G--------- ------GG-- G(-GAAA-)C -CUCA-G--C UAAUACC-CN 481 AU-ACG---- ---------- -------U-U CC-U--A-C- ---CUA-(-- --------UA 541 AG-------- -)-NAG---- GU-AG----G AA--GAAA-- ---GGGA--- ---------- 601 --(------- -GCAAUAG-- ---)------ ---------| ---CUC--U- G--CUG---- 661 ----AGNN-- NGG---G-|G CCUGC----- -GA|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGN-C|N-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GN-GU 961 G-C-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUG-GU-GG 1021 --GA-GAC-- GA-AUAA-GG --UGA-GGA( G----UGGAA -----A---) GCCU-CA-CU 1081 ---------- -------G-A U-GA-CGGU- A-UCC-C-AC U-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GC-CG- 1261 U-GA-AAG|U CCG---GUGU G-AAA-AC-U CA-CGG-C(- UC-A)A-CCG -UG-G-GAC- 1321 -UGCG-CUGG A-AAC-UACA C-GGCUU-GA GGA-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GA(-G AA-G)UCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--GU-NC CUGACG-CUG AG-G------ -------CC- C-NAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CN-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- -------UUC -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUGGG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(ACGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-U ---GGUG--- GUA----CUG 1981 -NCN-C--(- GAAA-)-GGG -G-AGGGA-- CC-------U GUGGC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- GUCACG---- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-UCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-N A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GAUA-CU CGU-G-CN-C CUUAU-G-CC -CU--NGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-U-GG -GA--CAGCG GGA-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-G CCCUU-AAAC -CC-A-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.thermar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga thermarum str. LA3. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga thermarum str. LA3. ORGANISM Thermotoga thermarum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS isolate_name= LA3 BASE COUNT 311 a 380 c 506 g 235 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUGUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UAC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCCU---C -AGAN-G-GG 421 -GAU-AA-CC A--------- ------GG-- G(-GAAA-)C -CCUN-G--C UAAUACC-CN 481 AU-ACG---- ---------- -------A-U -C-A--G-U- ---GAC-(-- --------GA 541 AG-------- -)-GUC---- AC-UG----G AU--GAAA-- ---GG----- ---------- 601 --(------- --NAACUG-- ---)------ ---------| ---CCC--N- N--CUG---- 661 ----AGNN-- NUG---G-|G CCCNC----- -GU|----CC C--AUNA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACN-A A|-GCC-NA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|N-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--N-N CN(--NU-CG --)GG-GUGU AAA--CCCC| UGUU-GC-GA 1021 --GG-GAC-- GA-AUAA-GG --UGC-GGA( G----UGGAA -----U---) GCCG-CA-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-GC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-C NA-CGG-C(- UC-A)A-CCG -UG-G-NAU- 1321 -UGCG-CCCU A-AAC-UGCC N-GGCUU-GG GGA-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUN-- ---------- ---------- ---------G 1501 GCC--GC-UC CCGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(AUA-AU)- ---------- ---------- ---------- --------CC -CUCCG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG N|U|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-A -C-C-UC--G 1861 N-A--CA-AG CGGUGG-AGC G-C-GU-NGU -UUAAUU-GG -(AUGCUG-A G)--CCAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UG|--- -------C-G ---GGUG--- GUA----CCG 1981 -ACN-C--(- GAAA-)-GGG -A-AGGGA-- CC-------C CUUCN----- --(NU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAGG---- ----GN---| AGC-CN-NNN |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-AGG-GN-N A-CU-G-C-G --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-N CG-ACG--UC -A-GGUA-CU CGU-G-CN-C CUUAU-G-CC -CU--NGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-U-G-C- GA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCU--NAAA -CC-A-CCC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CC........ UUGCA----C 3061 ACACCGCCN- GUC-AAG--- --CCA-CCCG A--GC-UGG- GG-GC-ACCU -GAA-GACGC 3121 C-GAC-C-CC -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G N-GN-NGUUG A-AGGU-NAA CCU-GG-UG- AGG-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.subtrrn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga subterranea str. SL1 DSM 9912. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga subterranea str. SL1 DSM 9912. ORGANISM Thermotoga subterranea. REFERENCE 1 AUTHORS Pace,N., Glenat,P. and Prieur,D. Jeanthon,C., Reysenbach,A., L'Haridon,S., Gambacorta,A., TITLE bacterium isolated from a continental reservoir Thermotoga subterranea sp. nov., a new thermophilic JOURNAL Arch. Microbiol. 164, 91-97 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9912 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22664|g915213 isolate_name= SL1 BASE COUNT 335 a 387 c 510 g 249 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--GG----- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGUA--- ---|-CC--- AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCU---C -AGCG-G-GG 421 -GAU-AA-CC G--------- ------GG-- G(-GAAA-)C -UCCG-G--C UAAUACC-CC 481 AU-AUU---- ---------- -------A-U CC-G--G-U- ---GAC-(-- --------GA 541 CA-------- -)-GUU---- GC-UG----G AU--GAAA-- ---GGAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--UUG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AUAA-GA --UCU-GGA( G----GAAA- -----U---) GCCA-GA-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-AU-CC- 1261 A-GU-AUG|U CGG---GUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -CGCA-CCCG A-AAC-UACU G-GGCUU-GG GGC-----UG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--AA-GC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UC-A-)- ---------- ---------- ---------- -------UUC -CUCCG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-A ---GGUG--- GUA----CCA 1981 -ACC-C--(- GAAA-)-GGG -GAAGGGA-- CC-------C UUUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAAG---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 -G--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CC-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-GGUA-CU CGU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-C-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CCCC--AAAA -CC-A-UCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCUA)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-GU UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-CGG- GG-GC-ACCU -GAA-GACGC 3121 C-UAU-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-GG-UGGUG A-AGGU-GAA UCU-GG-CG- AGG-GGGG-C 3301 U---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.elfii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga elfii str. SERB 6459 DSM 9442. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga elfii str. SERB 6459 DSM 9442. ORGANISM Thermotoga elfii. REFERENCE 1 AUTHORS Egan,A., Garcia,J.-L. and Ollivier,B. Ravot,G., Magot,M., Fardeau,M.-L., Patel,B.K.C., Prensier,G., TITLE from an African oil-producing well Thermotoga elfii sp. nov., a novel thermophilic bacterium JOURNAL Int. J. Syst. Bacteriol. 45, 308-314 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9442 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80790|g695761 isolate_name= SERB 6459 BASE COUNT 346 a 394 c 510 g 266 t 2860 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGU-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--GG----- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGUA--- ---|-CC--- AGNG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCU---C -AGUG-G-GG 421 -GAU-AA-CC G--------- ------GG-- G(-GAAA-)C -UCCG-G--U UAAUACC-CC 481 AU-AUU---- ---------- -------A-U CC-G--G-U- ---GAC-(-- --------GA 541 CA-------- -)-GUU---- GU-UG----G AU--GAAA-- ---GGAGU-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GACC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AUAA-GA --UCU-GGA( G----GAAA- -----U---) GCCA-GA-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-AU-CC- 1261 A-GU-AUG|U CGG---GUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -UGCG-CCCG A-AAC-UACU G-GGUUU-GG GGC-----UG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--AA-GC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(-UC-A-)- ---------- ---------- ---------- -------AUC -CUCCG-UUC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUUGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-GCGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-A ---GGUG--- GUA----CCA 1981 -ACC-C--(- GAAA-)-GGG -A-AGGGA-- CC-------C UUUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAAAG---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CC-G-CCG --CC(-GA-C GA)-NCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-GGUA-CU CGU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGUG GGU-C-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CCCC--AAAA -CC-A-UCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAAC-CG -GAAU-CGC- -UAAUA-AUC 3001 GC-GGA-(UC -AACCAU)-G CCG-CGGUG- AUUAC-GUC- CCC-GGG-GU UUGCA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CCCG A--GU-CGG- GG-GC-ACCU -GAA-GACGC 3121 C-UAU-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-N-G A-GG-UGUUG A-AGGU-GAA UCU-GG-CG- AGG-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tt.maritim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermotoga maritima str. MSB8 DSM 3109. ACCESSION No information KEYWORDS No information. SOURCE Thermotoga maritima str. MSB8 DSM 3109. ORGANISM Thermotoga maritima. REFERENCE 1 AUTHORS Achenbach-Richter,L., Gupta,R., Stetter,K.O. and Woese,C.R. TITLE Were the original eubacteria thermophiles? JOURNAL Syst. Appl. Microbiol. 9, 34-39 (1987) STANDARD No information COMMENTS Organism information Culture collection: DSM 3109 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21774 isolate_name= MSB8 BASE COUNT 327 a 430 c 564 g 241 t 2814 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAUAUGG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GGG---- -----GA-AA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUA--- ---|CCC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUC---C -GGAG-G-GG 421 -GAU-AA-CC A--------- ------GG-- G(-GAAA-)C -CCUG-G--C UAAUACC-CC 481 AU-ACG---- ---------- -------C-U CC-A--U-C- ---AAC-(-- --------GC 541 AA-------- -)-GUU---- GG-UG----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCC--C- G--CCG---- 661 ----GAGG-- AGG---G-|G CCCGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUG-GC-GG 1021 --GG-GAA-- GA-AUAA-GG --UAG-GGA( G----GAAA- -----U---) GCCC-UA-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-C-GC U-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGG- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-GUG|U CGG---AUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGC- 1321 -UGCA-UCCG A-AAC-UACC A-GGCUU-GG GGG-----CG G-UA-GAGGG AGA-C|GGAA 1381 CU-GCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGCAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 GCC--GA-CC CCGACG-CUG AG-G------ -------CC- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGC C--CA-CU-- -------A|G -GU-GU-GGG -GG-GG---- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- -------UCC -CUCCG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-GG -(AUGCUA-A G)--CCAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-C ---GGUG--- GUA----CCU 1981 -CCC-C--(- GAAA-)-GGG -GUAGGGA-- CC-------C AGUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGACUG---- ----GG---| AGC-CG-GCA |---C|A--G 2161 GU-GG-UGCA CG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GC(-GA-C GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUA-CU CGU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGG-C-GG -UA--CAAUG GGU-U-G-C- GA-CCC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCC--AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CCCG A--GU-CGG- GG-GC-UCCC -GAA-GACAC 3121 C-UAC-C-CC -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-GG-UGUCG A-GGGA-GAA CCU-GG-CG- AGG-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.2.4-STR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.2.4 STR.EM_3_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.2.4 STR.EM_3_ISOLATE. ORGANISM 2.2.4 STR.EM_3_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 3. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 3. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE community in Octopus Spring, Yellowstone National Park Phylogenetic analysis of the hyperthermophilic pink filament JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05660|g454799 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 3 BASE COUNT 299 a 394 c 544 g 221 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGC -UAAC-GC-- UGGC-AGC-G -UGC-CU--U AGCC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGC-CC (--UU----- ---------- ---------- 241 --------AU -)GG-GUCUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGG- 361 -A-CG-GC-G GAGU---AAU -AC-ACCGC- UAA--CCU-G C-CCUA---G -GGAG-G-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GUGG-G--C UAAUCCC-CC 481 AU-ACU---- ---------- -------C-U CC-C--U-U- --GGGG-(-- --------GC 541 AU-------- -)-CCCU--- GA-GG----G AG--GAAA-- ---GGGCC-- ---------- 601 --(------- ---GAGG--- ---)------ ---------| --GGCU--C- G--CCC---- 661 ----UGGG-- AGG---G-|G GCGGU----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CGU--(G -AGA)-GCGC ----GG-C-- CGG-C|C-CG -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GG-C 901 UGG-AAAUGU G-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCCC|-GCGA CGCU-GC-GU 961 G-C-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UUUU-GC-GG 1021 --GG-GAC-- GA-------- ---------( -----AGGAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACCUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGGG |-GUGG-C-- 1201 GAG-CGUUGC CC-GGAAUUA -CU-GGGC|U UAAA-GGGG- GUG-UAG-GC -G|-GC-UG- 1261 G-GU-GUG|U CGG---GCGU G-UAA-UC-U UG-GGG-C(- UC-A)A-CCC -CG-A-GGC- 1321 -UGCG-CCCG A-AAC-UACC U-AGCUA-GA GGG-----CG C-CA-GGGGG AGG-C|GGAA 1381 CU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGGGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 GGC--GU-AC CUGACG-CUG AG-G------ -------CC- C-GAAG-GC- UG-GGG-GA- 1561 GC-AAA-GG- -GG(AUUA-G AUAC)-CCC- ----CGUA-G UC----CCA- G-CA-GU--A 1621 AAC-G-AUGU G--GG-CU-- -------A|G -CG-GU-CUG -GC-C----- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- --------GG -CUGGG-UCG 1741 CG--AA---- --GG-(GAA- ---A)C-CG- AUAA-GCCCA C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU AG-ACGGG-A -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC G-C-GU-GGU -UUAAUU-CG -(AUGCUG-A C)--CGAAGA 1921 A-CCUCA-CC CGG-GC-UUG ACA-UC|--- -------C-C ---GCCG-U- CAA----GCU 1981 UGCC-C--(- GAAA-)-GGG -UAGGUGA-- GC-------- CUACC----- --(GGA---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUAG----- ----GC---| AGG-CG-GGA |---C|A--G 2161 GA-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-CC--CAU- 2281 AG--UUGC-C AG-CGG-GUC GCCCAC---- ---------- ----(---GU ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- -----GUGGG CGAUGCCG|G 2701 G-GA-CU-C- U-AUG-GG-G A-CU-G-CCG --GC(-GA-G GA)-GCC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-CG UGU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-C-GG -UA--CAGAG GGA-A-G-C- GA-CCC-U(G 2881 -CGA)GGGG- ---------- GA-GCCGAAU CCCU--AAAA -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGG-AG -GAGU-CGC- -UAGUA-AUC 3001 AC-CUA-(UC -AGCUAU)-G GGG-UGGUG- AAUAC-GUU- CCC-GGG-CU CUGUA----C 3061 UCACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-CGG- GG-GU-GCCU -GAA-GCC-C 3121 C--AC-C--- ---------- ---------- --------GA GGGUG(-GGG UGAAGG---- 3181 ---------- ---------- ---------- -------)CA AACUC----- ---------- 3241 ---------- ---------- --GG-UGACU G-GGGC-G.. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.3-THERMO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.3 THERMOPHILIC_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.3 THERMOPHILIC_ASSEMBLAGE. ORGANISM 2.3 THERMOPHILIC_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctm.prtlyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Coprothermobacter proteolyticus str. BT ATCC 35245 (T). ACCESSION No information KEYWORDS No information. SOURCE Coprothermobacter proteolyticus str. BT ATCC 35245 (T). ORGANISM Coprothermobacter proteolyticus. REFERENCE 1 AUTHORS Rainey,F. and Stackebrandt,E. TITLE Phylogenetic analysis of the bacterial genus Thermobacteroides indicates an ancient origin of Thermobacteroides proteolyticus JOURNAL Lett. Appl. Microbiol. 16, 282-286 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35245 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69335|g535108 Ref 1: incorrectly listed in Rainey & Stackebrandt as ATCC 35442 biol_source= tannery waste containing cattle manure isolate_name= BT NB: former name Thermobacteroides proteolyticus BASE COUNT 376 a 365 c 512 g 272 t 2851 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUACAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUGUA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CCUU---G -AGAG-G-AG 421 -GAC-AA-CC U--------- ------CA-- G(-GAAA-)C -UGAG-G--C UAAACCU-UC 481 AU-ACG---- ---------- -------U-U CA-C--U-G- ---GUA-(-- --------GG 541 GA-------- -)-UAC---- UG-GU----G AA--GAAA-- ---GAGUUA- ----CC---- 601 --(------- ---GUUGA-- ---)------ -----GG--| -UAGCU---- G--CUG---- 661 ----AAGG-- AUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- AGA------- -----CG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUCUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-U CC(--UU-CG --)GG-GCGU AAA--CUCC| UGGA-CU-GG 1021 --GG-GAC-- GA-------- ---------( -----GUAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-C-AG U-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU UC-GGAUUCA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GU -G|-GU-UG- 1261 U-CU-GUG|U CUC---AUGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CUC -UG-A-GAU- 1321 -UGCG-UGGG A-AAC-UAGG C-AGCUA-GA GGA-----CG G-UA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUCC C--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(UAA-AG)A ---------- ---------- ---------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- AUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-GCGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGUG--- GUA----GGA 1981 -ACC-U--(- GAAA-)-GGG -G-GACGA-- CC-------- CAACC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGGAG----- ----GG---| AGC-CA-GCA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCGU AA-------- CGAG-C--GC AACCC-UC-A |-UC--CCU- 2281 AA--UUGC-U CC-UGA---- ---------- ---------- CAGG(---UA ---AAA--)G 2341 GG-------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCA|G 2701 AGCA-CA-A- U-AGG-GA-G A-CC-G-CUG --GC(-GA-A GA)-GCC-A- -GAGG-A-AG 2761 G-GG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C AUG--CUACA AUGCA-G-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCCA-AAAG -CC-C-UGC- UCAGUUCGGA 2941 U-CGCACGC- (UGAAAU-U- C)-GCGUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-ACC 3001 GU-GGA-(UC -AGC-AA)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCCG A--GU-CGG- GU-UC-ACCA -GAA-G-GC- 3121 ------G-GU -AA-CC---- ---------- ---------- -----(---- -GAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---AGG---- G-CCGGA-CG A-CGGU-GUG CCU-GG-UA- AGG-AGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UCCU|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EM_19 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EM str. EM 19. ACCESSION No information KEYWORDS No information. SOURCE str. EM str. EM 19. ORGANISM str. EM. REFERENCE 1 AUTHORS Reysenbach,A.-L., Wickham,G.S. and Pace,N.R. TITLE Phylogenetic analysis of the hyperthermophilic pink filament community in Octopus Spring, Yellowstone National Park JOURNAL Appl. Environ. Microbiol. 60, 2113-2119 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05662|g454801 geog_source= Octopus Spring, Yellowstone Nat. Park biol_source= 84-88 deg. water isolate_name= EM 19 BASE COUNT 326 a 397 c 520 g 216 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGC -GAAC-CC-- UGGC-GGC-G -UGC-CU--C ACCC-AUGCA A-GCC-GAGC 121 G--AC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACAGGUC-GG (--GC----- ---------- ---------- 241 --------AA -)CC-GACCU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGA- 361 -A-CG-GC-C GAGU---AAU -AC-ACAGG- UAA--CCU-A C-CCUC---A -GGAA-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-CU 481 AU-AAG---- ---------- -------C-C CA-C--A-U- ---CUC-(-- --------GG 541 AU-------- -)-GGG---- AU-GU----G GG--AAAA-- ---GGGUG-- ----CCGGG- 601 --(------- --GUAAAA-- ---)------ --CCUGG--| --UG-C--C- G--CCU---- 661 ----GAGG-- AUG---G-|G CCUGU----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-GG -ACCGG-C-A 841 (CUGA-GA-C ACG)--GGCC -GGA-C-UCC -(UAUG)--G GAG-GC-AG- C-A---GG-G 901 -G---AUCUU G-GGCAAU-- GG-GU-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-C CC(--CU-CG --)GG-GUGU AAA--CCGC| UGUC--GGGA 1021 --GG-GACAA AGAGCUC-CC --C------( -----AAAAG ---------) ------G-GA 1081 ---------- -------GCU U-GA-UGGU- A-CCU-C-CG G-AG--GAAG ---------G 1141 -GACGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GUCC-C-- 1201 AAG-GGUUGC CC-GGAGUGA -CU-GGGC|G UAAA-GGGU- CCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CUC---CCGU G-AAA-GC-U GC-CCG-C(- UC-A)A-CGG -GC-A-GAG- 1321 -GUCG-GGAG A-UAC-UGCU G-GGCUC-GG GAC-----CG G-CA-GGGGG GAC-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACG-CCGA- 1441 -U-G-CC(-G AA-G)GGGG- -GUCCCUA-- ---------- ---------- ---------G 1501 GCC--GG-CU CCGACG-CUG AG-G------ -------GA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AGAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--C 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GG-CG-GGG -UA------- ---------- 1681 -(-AA-U-)- ---------- ---------- ---------- ---------C -CUCGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G C--GAAACUC -AAA-CGAAU UG-ACGGG-G -A-C-CC--G 1861 A-A--CA-AG CCGCGG-UGC A-U-UU-GGU -UUAAUU-CG -(AUGCAG-C G)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-C ---AGCU-C- AAG----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-AAGGUG- GG-------C UGGGC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GUCCAG---- ----CC---| AGC-UG-GCA |---C|A--G 2161 GU-GC-UACA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGCGU-C 2221 GG-G-(UUAA -GU)-CCCAG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CGC- 2281 UG--UUGC-C AU-UCCCC-- ---------- ---------- ----(---GA ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---GGGGA|G 2701 G-CA-CU-C- U-GCG-GG-G A-CU-G-CCG --GC(-G-AA GA)-GUC-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGCC-CG CAU-G-GC-C CUUAU-G-CC -CG--GGGC- 2821 U-ACA-CA-A GUG--CAACA AUGGC-C-GG -GA--CAAAG GGA-U-G-C- GA-GGC-C(G 2881 -CAA)GGCU- ---------- GA-GCGAA-U CCCAA-AAAC -CC-G-GUC- UUAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-C- C)-GACCCCG -UGAAGG-AG -GAGU-GGC- -UAGUA-AUC 3001 GC-GGA-(UC -ACGUAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC CUGUA----C 3061 ACACCGCCC- GU--ACG--- --CCA-UGGA A--GU-CAC- CU-GC-ACAG -GAA-A-UCC 3121 C--------- ---------- ---------- ---------- -----(---- CAAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GG-GA-CG A-AUGU-GUG GGU-GG-CG- ACU-GGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A53n 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A53n.. ACCESSION No information KEYWORDS No information. SOURCE clone A53n. ORGANISM clone A53n. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Micrbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91476|g987781 BASE COUNT 100 a 76 c 101 g 70 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .....GUUAU CC-NNAUUUA -UU-GGN-|G UAAA-GNGU- CUG-UAG-NG -U|-CC-UG- 1261 C-AC-AAG|U CCC---CGGU C-AAA-GC-C CA-CCG-C(- UN-A)A-CGG -UG-G-AAC- 1321 -UGCC-AGGG A-AAC-UAGC A-GGAUU-GA GGU-----UG G-GA-GAGGU AAG-N|GGAA 1381 UU-GCUGGU- GUA-GUA(-G UAAAA)-UGC -GU-UAAU-A UC-AGCAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 AAC--AC-AC CUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GC-UU-U-G -GC-AG---- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- -------CUG -CCAGA-GUC 1741 GU--UUAAAC AAGU-(UAA- ---C)A-CC- UUAA-GCAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A58L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A58L.. ACCESSION No information KEYWORDS No information. SOURCE clone A58L. ORGANISM clone A58L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Micrbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91481|g987786 BASE COUNT 96 a 77 c 102 g 81 t 4020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GCCC-C-- 1201 UAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- CUG-UAG-GC -G|-GU-CU- 1261 A-UU-ACA|U CUU---CUGU U-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -CGCG-GAAG A-GAU-GGGU A-GACUA-GA GGC-----CG G-UA-GAGGU AAG-C|GGAA 1381 UU-GUCGGU- GUA-GGG(-G UUAAA)-UCC -GU-UAAU-A UC-GACAGG- AACA-CCAA- 1441 -A-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------G 1501 AAC--GA-GC CUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|A -GC-AU-UGG -AA-GU---- ---------- 1681 -(UUC-GA)C C--------- ---------- ---------- --------CU -UCCAG-UGU 1741 UG--UUCACU UAAS-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-G....... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syn.livid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechococcus lividus str. y-7c7b-S. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus lividus str. y-7c7b-S. ORGANISM Synechococcus lividus. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67093 (bases 1 to 233) isolate_name= y-7c7b-S NB: The genus name should have brackets around it this is incorrectly named Ward et al. probably mixed up the 2 seqs/org. BASE COUNT 126 a 154 c 207 g 88 t 3801 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|.....C C--HANA-N- CUN-N---UU 721 NG-UN-GG-( NU-HAU-NG) -C-CCACH-H A|-GGC-NA- CNA------- -----CG-GG 781 U-AG-C-HG| -G-CHU--(N -ANA)-GGGH ----NG-U-- CNC-H|H-AC -NCGGG-H-H 841 (CUNA-NA-H HCG)--GGCH -NNH-C-HCH -(HHHG)--G GHN-NH-HG- H......... 901 ....AAUCUU N-GGCAAU-- NG-GC-(NNA A)-GCC-UNA CCCA|-GCGA CGCN-GN-NH 961 N-G-GG-G-A A-NAA--G-G CU(--HH-NN --)GU-HGUH AAC--CCNN| NUUC--U-NG 1021 --AG-GAA-- GA-ACCC-AG --GGN-AGG( U----NAAHN A----C---) CNNU-C.... 1081 .......... .......... ...A-CGNH- H-CUC-C-AG N-AG--AAA- ---------S 1141 -CNCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... ......U-GA GGG-----CC G-NA-GAGGC UNG-C|GGAA 1381 UU-CCCGGU- GUH-GGG(-G UNAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GG(-G AA-G)CCNG- -CYAGCUN-- ---------- ---------- ---------G 1501 ACG--GU-UC CUNACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-WAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUW-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGG G--CN-CU-- -------W|G -GN-NU-GGG -GG-U----- ---------- 1681 -(-NA-NN)- ---------- ---------- ---------- --------NC -CUCUN-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CG- UNNA-GCGCN N|N|G-CCN- N-GGGAGNNN 1801 GGC-S---(G CAA)---G-G C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......G|G 2701 G-CN-CU-C- U-NAG-GN-N A-CU-G-CHG --GG(-GA-N NA)-CHC-G- -GAGG-A-AG 2761 G-NN-GGN-A UN-ACG--UN -A-AGUC-NU NNU-N-GC-C NNNNU-N--C -NN--GGGC- 2821 U-ACA-CA-C GUN--CUHNH CNNHN-G-GG -GG--UACAN NGG-G-U-N- NG-AAC-H(N 2881 -CHN)GGGN- ---------- GN-GCUNA-U CCCAG-AAAG -CC-C-NNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-CG -GAAU-CGC- -UNGUA-AUG 3001 GC-GGA-(UC -AGC-AN)-G CCG-CNGUN- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tdb.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermodesulfobacterium commune str. YSRA-1 ATCC 33708 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermodesulfobacterium commune str. YSRA-1 ATCC 33708 (T). ORGANISM Thermodesulfobacterium commune. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1986) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33708 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10662 ATCC 33708 (T) = DSM 2178 geog_source= Ink Hot Spring, Yellowstone National Park biol_source= mud isolate_name= YSRA-1 NB: oligo of 7 isolated bases removed at ~933r because it disagreed with universal pattern Referred to as the type strain former name Thermodesulfotobacterium commune BASE COUNT 278 a 327 c 420 g 220 t 3131 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUCCCUG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UAGC-GGC-G -CGC-CU--A ACCC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGG-GU (--UU----- ---------- ---------- 241 --------CG -)GC-CC... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ..GU---AAC -AC-G....- .......... .......... .......... 421 .GAU-AA-CU A--------- ------CC-- C(-G....). ......G--C UAAUACC-G. 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -GCGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GG-G 901 GGG-AAUCUU G-GGCAAU-- GG-GY-(GAA A)-GCC-UGA CCCA|-GCGA CGCN-NN-NU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCCC| UGUU-CU-GG 1021 --AG-GAA-- GA-ACCC-AG --GGU-AGG( U----GAAUA -----A---) CCUA-UC-CU 1081 ---------- -------GGC U-GA-CGGU- A-CUC-C-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GCAG |-GUGN-N-- 1201 UAG-CGUUGC CC-NGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-AC-AAG|U CAU---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-N-UAA- 1321 -GGCC-UAUG A-UAC-UGUC U-NNCUU-GA GGG-----CC G-GA-GAGGC UNG-C|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GG(-G AA-G)CCNG- -CUAGCUG-- ---------- ---------- ---------G 1501 UCG--GU-UC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CN-CU-- -------A|G -GU-GU-GGG -GG-U----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... ..-GAAACUC -AAA-GGAAU UG........ .......... 1861 .......... .......... ........GU -UUAAUU-CG -(NNNNAA-A G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-AUG ACA-UG|--- -------C-G ---AGGG-AG UAC----CCU 1981 -GGU-G--(- GAAA-)-CAC -C-GGGAAA- GC------GU AGGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- UCUCUAC--- ----GG--G| CUC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- GA-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-C-UCC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GGA-(UC -AGC-AU)-G CCG-CCGUG- AAUAC-GUU- CCC-G..... ..GUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-CG.. .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4-GREEN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. ORGANISM 2.4 GREEN_NON-SULFUR_BACTERIA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1-CHLO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1 CHLOROFLEXUS_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1 CHLOROFLEXUS_SUBDIVISION. ORGANISM 2.4.1 CHLOROFLEXUS_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1.1-TM 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. ORGANISM 2.4.1.1 TMC.ROSEUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD20 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26207|g498408 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 66 c 75 g 57 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ....C-UC-G |-CC--AUA- 2281 UG--UU-A-C ---------- ---------- ---------- ----(---AA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 U-------C- A-UAU-GG-G A-CC-G-CCG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -CG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-AG -UA--CAAUU GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CC-AU-AAAG -CU-G-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-AGG-(AC -AGCUAU)-A CUG-CGUUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD21 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26208|g498409 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 68 c 80 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UU--GCC- 2281 AG--UUA--- ---CA----- ---------- ---------- ----(----- ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|- 2701 ------U-C- U-GGC-GA-G A-CU-G-CCG --GU(-AU-A AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGG-C-GG -UA--CAAUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CCCACCAAAG -CC-G-UUC- GUAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- G)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-A-G-(UC -AGCCAU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tmc.roseum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermomicrobium roseum. ACCESSION No information KEYWORDS No information. SOURCE Thermomicrobium roseum. ORGANISM Thermomicrobium roseum. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34115 BASE COUNT 295 a 416 c 585 g 226 t 2854 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~GGGGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGG -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ANGCACG-CN (--CU----- ---------- ---------- 241 --------CU -)GG-CGUGC CG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- GAA--CCC-U C-CCGG---G -UGCG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-CC 481 AU-ACG---- ---------- -------C-U UG-G--C-U- ---GGC-(-- --------GG 541 UG-G------ -)-GCC---- GG-CC----A AG--GAAA-- ---GGCGCA- ----G----- 601 --(------- ---GCGA--- ---)------ -----C---| -UGUGC--U- G--UGC---- 661 ----UCGG-- AGG---G-|C CCUGC----- -GG|----CC U--AUCA-G- CUA-G---AC 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-G U|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUCUU C-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCGC| UGUU-CG-GG 1021 --GG-GAC-- GA-------- ---------( -----UCGAG ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCC-U-CG G-AG--CAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAC CC-GGAGUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UG- 1261 G-GU-ACG|C CGC---GUGU G-AAA-GU-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCG-CGCG G-GAC-GGCC U-GGCUC-GA GGG-----CG G-GA-GAGGC GGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCGCUG-- ---------- ---------- ---------G 1501 CCC--GU-AC CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGC G--GG-CG-- -------A|G -GU-GU-GGG -UG-G----- -U-------- 1681 -(GUU-GA)C C--------- ---------- ---------- --------CC -AUCCG-UGC 1741 CG--GC---- --GC-(CAA- ---C)G-CA- GUAA-GCCCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- -------C-C ---ACCG--- -AA----CCU 1981 -GGC-U--(- GAAA-)-GGC -U-GGGG--- UG-------- --CCC----- --(GGU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGG------- ----AG---| CGG-UG-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-GG--GUC- 2281 AG--UUA--- ---CG----- ---------- ---------- ----(---CG ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|- 2701 ------U-C- U-GAC-CC-G A-CU-G-CCG --GG(-GA-A AG)-CCC-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUGAC-G-CC -CU--GGGC- 2821 G-ACA-CA-C ACG--CUACA GUGAC-C-GG -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CCCGC-AAAC -CC-G-GUC- GUGGUGGGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAACG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCCAU)-A CGG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GC-UGG- CU-UC-ACCU -GAA-G-CUG 3121 G-UGG-G-CC -AA-CCGGC- ---------- ---------- -----(---- -GCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC UGGGGG-C-A G-CC-GU-CG A-GGGU-GGG GCU-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG NNNNGG--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spb.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerobacter thermophilus str. 6022 DSM 20745 (T). ACCESSION No information KEYWORDS No information. SOURCE Sphaerobacter thermophilus str. 6022 DSM 20745 (T). ORGANISM Sphaerobacter thermophilus. REFERENCE 1 AUTHORS Demharter,W., Hensel,R., Smida,J. and Stackebrandt,E. TITLE Sphaerobacter thermophilus gen. nov., sp. nov. A deeply rooting member of the actinomycetes subdivision isolated from thermophilically treated sewage sludge JOURNAL Syst. Appl. Microbiol. 11, 261-266 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 20745 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53210 DSM 20745 (T) = ATCC 49802 isolate_name= 6022 BASE COUNT 236 a 313 c 400 g 176 t 3251 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 ...UG-GG-( GU-NAU-GG) -C-CUACC-G U|-GGC-GA- UGA------- -----CG-GG 781 U-NG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 NGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UAA YGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GCA--C-C C-(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-CG-GG 1021 --GG-GAC-- GA-AG----- ---------( -----GCAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-C-CG G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CCCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UN- 1261 C-CC-GCG|U CGC---ACGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-C-AGG- 1321 -GUCG-UGCG A-UAC-GGGC G-UGCUA-GA GGC-----AG G-GA-GAGGC UGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAGCUNG-- ---------- ---------- ---------- 1501 CCC--UN-AC CUGACG-CU- ---N------ -------AG- C-GAAAGGC- GC-GGG-NA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CGC- G-CA-GU--A 1621 AAC-G-CUGU G--GA-CU-- -------A|G -GU-GU-N-G -GA-GGU--- ---------- 1681 -(GUA-GA)- ---------- ---------- -C-------- -------CCC -UUCCG-UG- 1741 CC--GG---- --GC-(UAA- ---C)G-CA- GUAA-GUCCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCGG--- -AA-----CC 1981 -CCG-G--(- GAAA-)-CCG -G-GGNN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- ----AG---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UU.. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .........G A-CU-G-CCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-GG-UGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUA--G-CC -CU--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-GG -GA--CAGCG GGC-G-G-C- CA-AGC-G(G 2881 -CAA)CGCG- ---------- GA-GCCAA-U CCCUC-AAAC -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGGC- (UGCAAC-U- N)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-AGG-(UC -AGCCAU)-A CUG-CGGUG- AAUAU-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGC--- --UCA-CGAA A--GC-CGG- CA-AC-ACCU -GAA-N-CCG 3121 G-UGG-G-CC -AA-CCC--- ---------- ---------- -----(---- -CAUAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GU-CG A-CGGG-UGG GCU-CG-UC- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Her.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Herpetosiphon aurantiacus. ACCESSION No information KEYWORDS No information. SOURCE Herpetosiphon aurantiacus. ORGANISM Herpetosiphon aurantiacus. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34117 BASE COUNT 331 a 359 c 465 g 265 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUGUCGG CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGAC- UAA--CCU-A C-CCCG---G -UGUG-G-GG 421 -GAU-AA-CG G--------- ------GU-- C(-GAAA-)G -ACUC-G--C UAAUCCC-GC 481 CA-UAC---- ---------- -------G-A U--------- ---NGC-(-- --------CU 541 CG-------- -)-GCG---- ---------G AG--GAAA-- ---GCC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GG--C- G--CAC---- 661 ----UGGN-- NGG---G-|G GUCGC----- -GU|----CC C--AUUA-G- AUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-GCACC-A A|-GUC-GA- UGA------- -----UG-GG 781 U-CU-C-UG| -G-UCU--(G -AGA)-GGNC ----GA-C-- CAG-A|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GGN-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-G CU(--CU-UG --)GG-UUGU AAA--CUCC| UUUU-GG-GG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-CC G-AA--UCAG ---------G 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GNN-UAG-GC -N|-GU-CG- 1261 A-UG-AUG|U GCC---GCGU G-AAA-GC-G CC-GGA-G(- UA-A)U-GCC -GG-C-CAG- 1321 -GUCG-CGGC A-GAC-ACGU U-GACUA-GA GGC-----UC G-CA-GAGGA ACG-U|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G CA-A)GCGG- -CGUUCUG-- ---------- ---------- ---------G 1501 GCG--AG-AC CUGACA-CUG AG-C------ -------CA- C-GACG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGC A--UA-CC-- -------A|G -GU-GU-GGG -AU-GGCG-- ---------- 1681 -(-UU-CG)- ---------- ---------- CG-------- -------UCG -UUCCG-UGC 1741 CG--CA---- --GC-(UUA- ---C)G-CG- AUGA-GUAUG C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-UC-UUG ACA-UA|--- -------G-C ---ACUG--- -CA----AGC 1981 -UUC-G--(- GAAA-)-UGA -A-GUUCG-- C--------- ---CU----- --(U------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| GUG-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--AGG- 2281 UG--UUA--- ---C------ ---------- ---------- ----(---AA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- A-CCU-CA-G A-CU-G-CCG --UU(-GUCA AC)-AAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-AC -UA--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-U-GG -GA--GAAUG CGC-C-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- CU-GCGAA-U CGAG--AACA -CC-A-GUC- ACAGUUCAGA 2941 U-UGGGGGC- (UGCAAC-U- C)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUCA-GUA- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGA A--GU-GGG- AA-AC-ACCU -GAA-G-UCC 3121 G-UG--G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-GGGU-GGG UCU-CG-UA- ACU-G..... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.1.2-CF 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.1.2 CFX.AURANTIACUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.1.2 CFX.AURANTIACUS_GROUP. ORGANISM 2.4.1.2 CFX.AURANTIACUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_C2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 3 AUTHORS Weller,R., Weller,J.W. and Ward,D.M. TITLE 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA JOURNAL Appl. Environ. Microbiol. 57, 1146-1151 (1991) STANDARD No information REFERENCE 4 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62775 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; specif. rel. OS_C, OS-4 (OS20 ) BASE COUNT 232 a 305 c 377 g 173 t 3289 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-CG-GG 1021 --GG...... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- A-CC..C-CG G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-N-- 1201 GAG-CGUUGU CC-GGAGUCA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-AA- 1261 C-CU-CAG|U GUC---GUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-GAG- 1321 -GCCA-UGGC A-AAC-UGGG U-CGCUC-GA GCU-----GY G-GA-GAGGC CCC-U|CGAA 1381 UU-GCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGCAGG- AAGA-CCAA- 1441 -G-G-GG(-G AA-G)CCAG- -GGGGCUG-- ---------- ---------- ---------G 1501 CCG---C-AS SUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--CA-CU-- -------C|G -GC-GU-GUG -GC-GAC--- -U-------- 1681 -(AUU-GA)C ---------- ---------- -G-------- -------UCG -CGGNG-NGC 1741 CC--UA---- --GC-(UCA- ---C)G-CG- AUAA-GUGGU C|C|G-CCU- G-GGAACUAC 1801 GAG-C---(N CAA)---S-S UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGN N-U-GU-GGU -UUAAUU-CG -(ACACAA-C C)--CGCAGA 1921 A-CCUUA-CC CAG-AC-UGG ACA-UG|--- -------A-C ---GGUG--- -CA----GAC 1981 -GG--C--(- GGAA-)-ACG -U-CGUCG-- C--------- ---CU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUC-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CG--GUU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-AAC-CG-G A-CU-G-CCC --UU(-C--A --)-GG---- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-G-CC -GA--CAAUG CGU-C-G-C- UC-CCG-C(G 2881 -CAA)GCGG- ---------- -A-UGCYA-A UCGCC-AAAC -GG-N-GCC- CCAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS-4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Weller,R., Weller,J.W. and Ward,D.M. TITLE 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA JOURNAL Appl. Environ. Microbiol. 57, 1146-1151 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62774 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; specif. rel. OS_C, OS_C2 (OS20 ) BASE COUNT 231 a 302 c 371 g 174 t 3298 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-CG-GG 1021 --GG...... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- A-CC..C-CG G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-N-- 1201 GAG-CGUUGU CC-GGAGUCA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-AA- 1261 C-CU-CAG|U GUC---GUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-GAG- 1321 -GCCA-UGGC A-AAC-UGGG U-CGCUC-GA GCU-----GY G-GA-GAGGC CCC-U|CGAA 1381 UU-GCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGCAGG- AAGA-CCAA- 1441 -G-G-GG(-G AA-G)CCAG- -GGGGCUG-- ---------- ---------- ---------G 1501 CCG---C-AS SUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--CA-CU-- -------C|G -GC-GU-GUG -GC-GAC--- -U-------- 1681 -(AUU-GA)C ---------- ---------- -G-------- -------UCG -CGGNG-NGC 1741 CC--UA---- --GC-(UCA- ---C)G-CG- AUAA-GUGGU C|C|G-CCU- G-GGAACUAC 1801 GAG-C---(N CAA)---S-S UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGN N-U-GU-GGU -UUAAUU-CG -(ACACAA-C C)--CGCAGA 1921 A-CCUUA-CC CAG-AC-UGG ACA-UG|--- -------A-C ---GGUG--- -CA----GAC 1981 -GG--C--(- GGAA-)-ACG -U-CGUCG-- C--------- ---CU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUC-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CG--GUU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-AAC-CG-G A-CU-G-CCC --UU(-N--A --)-GG---- -GAGG-A-AG 2761 G-CN-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-G-CC -GA--CAAUG CGU-C-G-C- UC-CCG-C(G 2881 -CAA)NNNN- ---------- -N-UGCUA-A UCGCC-AAAC -GN-N-NCC- CCAGUGNAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD5 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26192|g498440 library_source= unidentified soil bacterium from paddy field BASE COUNT 53 a 78 c 86 g 42 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CC-G |-CG--GCC- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---CU ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-GGC-CG-G A-CA-A-UGC --U-(----U UC)--GG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-U CUUAC-A-UC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGAC-G-CC -GA--CAGUG CGC-A-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCGAA-U CGCC--AAAC -GG-C-GUC- UCAGUUCAGA 2941 U-CGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD2 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26189|g498407 library_source= unidentified soil bacterium from paddy field BASE COUNT 56 a 73 c 80 g 50 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-CG--GUC- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---UC ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-GGC-CG-G A-CU-G-CCG --U-(----U UU)--AC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-UG CAU-G-GC-U CUUAC-G-CC -UG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGCC-G-UC -GA--CAAUG CGC-A-G-C- UA-CUG-C(G 2881 -UAA)GCAG- ---------- AU-GCUAA-U CGCC--AAAC -GA-C-GGC- CCAGUGCAGA 2941 U-UGGGGGC- (UGAAAC-U- C)-GCCCCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUA- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2022 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2022. str. SBR2022. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2022. str. SBR2022. ORGANISM str. SBR2022. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84565|g871686 isolate_name= SBR2022 BASE COUNT 82 a 102 c 134 g 53 t 4005 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GCAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- A-A--CCU-G C-CCGA---C -CGUG-G-GG 421 -GAU-AA-CA C--------- ------GC-- C(-GAAA-)G -GCGG-G--C UAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GUGA--- ---)------ ---------| ----UG--C- G--CGG---- 661 ----UCGG-- AGG---G-|G GCUGC----- -GG|----CC C--AUCA-G- GUC-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -UGA)-GGAC ----AA-C-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 N-G-AG-G-A C-GAC--G-G NC(--UU-CG --)GG-UUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hltx.orego 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliothrix oregonensis str. F1. ACCESSION No information KEYWORDS No information. SOURCE Heliothrix oregonensis str. F1. ORGANISM Heliothrix oregonensis. REFERENCE 1 AUTHORS Ward,D.M., Kopczynski,E.D., Heimbuch,B.K., Bateson,M.M. and Weller,R. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04675 isolate_name= F1 BASE COUNT 198 a 222 c 307 g 144 t 3505 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A AUGC-AUGCA A-GUC-GUAC 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCGCCC-CC (--UU----- ---------- ---------- 241 --------UC -)GG-GGGUG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ -GUG-GCGC- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- U-A--CCU-A C-CCCU---G -UGUG-G-GG 421 -GAC-AA-CG C--------- ------AC-- C(-GAAA-)G -GGGG-C--C UAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GUC---- ---------- 601 --(------- ----GCA--- ---)------ ---------| ----AG--C- G--CAC---- 661 ----GGGG-- AGG---N-|G GCCUG----- -CG|----CG C--AUCA-G- GUC-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-CC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-C-CG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CGGC| UUUU-GC-CU 1021 --AG-GAA-- GA-------- ---------( ------AAC- ---------) ---------- 1081 ---------- ---------- A-GA-CGGU- A-CUA-G-GC G-AA--UCAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UG- 1261 C-AU-GCG|U CAC---CACU G-AAA-GC-U CC-AAG-C(- UC-A)A-CUU -GG-U-GAG- 1321 -GYGU-GGUG A-UAC-GAUG C-AGCUG-GA GGC-----AG C-CA-GAGGA AAG-C|GGAA 1381 UU-CCGGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AACG-CCAG- 1441 -U-G-GU(-G CA-G)ACGG- -CUUUCUG-- ---------- ---------- ---------G 1501 GGC--UG-AC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGU U--CG-CU-- -------C|G -GU-GU-GCG -GC-ACG--- -G-------- 1681 -(UGC-AA)C G--------- ---------- -C-------- -------GUG -CGGCG-UGC 1741 CC--AA---- --GG-(UUA- ---C)C-CG- UUAA-GCGAA C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACA..... .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04703 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:Chloroflexus relative; perif. rel. OS_C, OS_C2, OS-4 gp BASE COUNT 199 a 209 c 306 g 145 t 3517 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AA-CG G--------- ------GC-- C(-GAAA-)G -GUUC-G--C UAAUCNS-SS 481 AU-ACG---- ---------- ---------- ---------- --CUCC-(-- --------UG 541 CG-------- -)-GGAG--- ---------- ----GAAA-- ---GCG---- ---------- 601 --(------- ----GAG--- ---)------ --------A| NG--NG--C- A--CUC---- 661 ----GG---- AU------|G NGUGC----- -GG|----CC C--AUCA-G- GUU-G---CU 721 GG-UA-GG-( GU-AAG-G-) -C-CUACC-A G|-GCC-GA- UGA------- -----CG-GG 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CGCAAU-- GG-AC-(ACA U)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A C-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GG-GU 1021 --GG-GAC-- GAU------- ---------( ---------- ---------) ---------- 1081 ---------- -------G-A U-GA-CGGU- A-CCA-C-CC G-AA--UAAG ---------N 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUA-A) G-A-C-GGAG |-GGGG-N-- 1201 AAG-NGUUGU CC-GGACUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GC- 1261 G-AU-GCG|U --C---G-CU G-AAA-AG-S SS-CGG-C(- UU-A)A-CCG -GG-C-GAC- 1321 -GGGC-GACG A-UAC-GAUC G-CACUG-GA GGC-----AG G-GA-GANGU UGG-U|GGAA 1381 UU-CCGNNU- GUA-GUG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AAUG-CCGG- 1441 -U-G-GC(-G UA-A)GCGG- -CCAACGA-- ---------- ---------- ---------G 1501 UCC--UG-AC CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -GU-GU-GUG -AU-CGGG-- ---------- 1681 -(-GU-GA)- ---------- ---------- CC-------- -------CGA -UGGCG-UGC 1741 CG--AA---- --CG-(UUA- ---C)G-CG- GUAA-GCCGA C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---C-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-A-C G-U-GU-GGU -UUAAUU-CG -(AC--AA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UUG ACA-UG|--- -------C-C ---CCUG--- -CA----AGC 1981 -GCA-C--(- GGAA-)-ACG -U--GUGA-- C--------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- AG-------- -----G---| GUG-GG-GCA |---C|C--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UC.|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. J-10-fl ATCC 29366. ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. J-10-fl ATCC 29366. ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Oyaizu,H., Debrunner-Vossbrinck,B., Mandelco,L., Studier,J.A. and Woese,C.R. TITLE The green non-sulfur bacteria: A deep branching in the eubacterial line of descent JOURNAL Syst. Appl. Microbiol. 9, 47-53 (1987) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29366 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34116 isolate_name= J-10-fl BASE COUNT 301 a 394 c 494 g 224 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAAUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-GG (--CG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----GAA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UGNN-- AGG---G-|G CCNGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-GG- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-CCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGU C-CACUC-GA GGC-----AA G-CA-GAGGG UGG-C|GGAA 1381 UU-CCGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AACG-CCAG- 1441 -U-G-GG(-G AA-G)CCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--UG-AC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UCA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGA.... 1801 ........(. ...).....C UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(ACGCAA-C A)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG ACA-UG|--- -------G-C ---GCUG--- -CA----UCC 1981 -CCU-G--(- GAAA-)-CAG -G-GNCG--- C--------- ---CU----- --(GN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| CNG-CA-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GU-G |-UC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCG --NU(-G--A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CGCCU-AAAC -GU-G-GUC- UCAGUGCAGA 2941 N-UCGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- CA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -AGUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG A-GGGC-AGG GGC-CG-CG- AC........ 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aur400 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. Y400-fl. ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. Y400-fl. ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L05510 (bases 1 to 230) isolate_name= Y400-fl BASE COUNT 153 a 195 c 236 g 106 t 3686 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(.GAAA-)G -ACNN-N--H CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CN-------- -)-NAG---- ---------- ----GAAA-- ---GCG---- ---------- 601 --(------- ----HHA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UNNN-- --------|- NCNNC----- -GG|----CC C--AUNA-G- GUH-G---UU 721 NG-UG-UG-( GU-AAC-GG) -C-GCACN-N A|-GCC-AA- UGA------- -----HG-GG 781 U-AC-C-CN| -G-UCU--(G -AGA)-GGAH ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCN -NGN-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU C-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GN-GU 961 G-G-AG-G-A C-GAC--G-G CN(--NN-CG --)GG-UUGN NAA--C...| .....GG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCNG ---------C 1141 -CCCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 ......CCCN A-UAC-GAGU C-HACUH-NA KGC-----WW G-CA-NHGGG UNG-C|DKWA 1381 UU-CCGGGU- GUA-UCG(-G UNAAA)-UGC -GU-AGAG-A UC-CGGAGG- AAYN-CCNG- 1441 -U-G-GG(-G AA-G)CCGG- -CCWCCUG-- ---------- ---------- ---------G 1501 GCU--UN-AC CUNACN-CUN CN-N------ -------CG- C-GACA-NN- NN-GGG-GA- 1561 CG-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGC C--GG-NN-- -------H|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UCN- ---N)G-CG- GUNA-GCCGG N|N|G-CCN- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UG-UCUACCG -ANA-CU... .......... .......... 1861 .........G GAUGAC-GUC AAG-UC-AGC .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .AU-G-GC-C CUUAH-G-UH -HH--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-ACUAA-U CGCCU-NAAC -GU-N-GHC- UCANUGCANA 2941 U-HGGGGGC- (UGCAAC-U- C)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGNN- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.auran2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aurantiacus str. J-10-fl (T). ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aurantiacus str. J-10-fl (T). ORGANISM Chloroflexus aurantiacus. REFERENCE 1 AUTHORS Hanada,S., Hiraishi,A., Shimada,K. and Matsuura,K. TITLE Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement JOURNAL Int. J. Syst. Bacteriol. 45, 676-681 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38365|g550527 isolate_name= J-10-fl (T) BASE COUNT 292 a 382 c 496 g 216 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUGC-AUGCA A-GUC-GAAC 121 R--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACA-GG (--CG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----GCA--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----NGGG-- GAG---G-|- --UGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-AA- UGA------- -----CG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UGC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-RAAUUU N-CCCAAU-- GG-GC-(GCA A)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CC(--CU-A- --)GG-UUGU AAA--CKCC| UUUC-AG-GU 1021 --GG-GAC-- GA-------- ---------( ------UGC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-GG- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-UCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGU C-CACUC-GA GGC-----AA G-CA-GAGGG UGG-C|GGAA 1381 UU-UCGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-CGGAGG- AACG-CCGG- 1441 -U-G-GG(-G AA-G)CCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--UU-AC CUGACG-CUG CG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|G -GC-GU-CUG -GC-GCAC-- ---------- 1681 -(-GU-UG)- ---------- ---------- GU-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --NC-(UNA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGACUAC 1801 GAG-C---(G CAA)---G-C UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -UUAAUU-CG -(ACGCAA-C A)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUN ACA-UG|--- -------G-U ---GCUG--- -CA----UCC 1981 -CCU-G--(- GAAA-)-CAG -G-GGCG--- C--------- ---CU----- --(GN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| C-G-CA-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GU-G |-UC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCC --GU(-G--A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ANG--CUANA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CUCCU-AAAC -GU-G-GUC- UNAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- N)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- CA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -AGUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG U-GGGC-AGG GGC-CG-CG- ACUGGGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cfx.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chloroflexus aggregans str. MD-66 DSM 9485 (T). ACCESSION No information KEYWORDS No information. SOURCE Chloroflexus aggregans str. MD-66 DSM 9485 (T). ORGANISM Chloroflexus aggregans. REFERENCE 1 AUTHORS Hanada,S., Hiraishi,A., Shimada,K. and Matsuura,K. TITLE Chloroflexus aggregans sp. nov., a filamentous phototrophic bacterium which forms dense cell aggregates by active gliding movement JOURNAL Int. J. Syst. Bacteriol. 45, 676-681 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9485 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32255|g514973 Former RDP Sids: Ccr.aggreg isolate_name= MD-66 NB: 229-234r does not match phylogenetic group characteristics BASE COUNT 284 a 387 c 488 g 209 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-MU--A AUGC-AUGCA M-GUM-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCAG-NN (--NG----- ---------- ---------- 241 --------UG -)CC-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CGUG-GCGA- 361 -A-CG-GC-U GAGG---AAC -AC-GUGGG- UGA--CCU-A C-CCCG---G -AGUG-G-GG 421 -GAU-AC-CC C--------- ------GU-- C(-GAAA-)G -ACGG-G--A CAAUCCC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ----AAC--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----CGGG-- -GA---A-|C GU--C----- -GG|----CC C--AACA-G- GUA-G---UU 721 GU-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-ACC-AA- UUG------- -----MG-GG 781 U-AC-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-G|C-AG -ACUGG-G-A 841 (CUGC-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 AGG-AAUUUU N-CCCAAU-- GG-GC-(ACA C)-GCC-UGA GGGA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAC--G-G CU(--NN--G --)GG-UUGU AAA--CUCC| UUUN-GG-GU 1021 --GG-GAC-- GA-------- ---------( ------GAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-SA G-AA--GCAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUGA CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- GCG-GAG-GC -G|-GU-CU- 1261 G-CU-GCG|U CGG---CGCU G-AAA-GC-G CC-CCG-C(- UU-A)A-CGG -GG-C-GAG- 1321 -GCGC-GCCG A-UAC-GAGC A-GGCUG-GA GGC-----GA G-CA-GAGGG UGG-U|GGAA 1381 UU-UUGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-NGGAGG- AACG-CCGG- 1441 -U-G-GA(-G CA-G)UCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--BU-GC CUGACG-CUG CG-G------ -------CG- C-GACC-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC C--GG-CU-- -------C|A -GC-GU-UUG -GC-GCNC-- ---------- 1681 -(-GU-GA)- ---------- ---------- CC-------- -------GUG -CUGGG-UGC 1741 CU--UA---- --GC-(UNA- ---C)G-CG- GUAA-GCCGG C|C|G-CCU- G-GGGACUAC 1801 GAC-C---(G CAA)---G-C UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC G-U-GU-GGU -NVAAUU-CG -(ACGCAA-C C)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUR ACA-UG|--- -------A-C ---GCUG--- -CA----GGC 1981 -GCG-G--(- GAAA-)-CCG -C-GCGG--- C--------- ---CC----- --(CN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- GG-------- -----G---| -UG-CG-UUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CU-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-GC-G |-NC--GGU- 2281 AG--UUA--- ---C------ ---------- ---------- ----(---AG ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|- 2701 ------U-C- U-ACC-GA-G A-CU-G-CCC --CG(-AG-A CC)-GGC-G- -GAGG-A-AG 2761 G-CG-CGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUGAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C ACG--CUACA AUGGC-C-AC -GA--CAAUG CGU-U-G-C- AC-ACC-C(G 2881 -CAA)GGCG- ---------- GC-GCUAA-U CUCC--AAAC -GU-G-GUC- UNAGUGCAGA 2941 U-CGGGGGC- (UGCAAC-U- N)-GCCCCCG -UGAAGG-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-GUC-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGG A--GU-GGC- UA-AU-GCUU -GAA-G-UCC 3121 G-UGU-G-CU -AA-CCCC-- ---------- ---------- -----(---- -CCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-A G-CG-GC-CG W-GGGC-AGG AGC-CGGCG- ACCUGGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2-DEIN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. ORGANISM 2.4.2 DEINOCOCCUS-THERMUS_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1-TH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1 THERMUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1 THERMUS_GROUP. ORGANISM 2.4.2.1 THERMUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.1 T.AQUATICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.1 T.AQUATICUS_SUBGROUP. ORGANISM 2.4.2.1.1 T.AQUATICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZHGI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZHGI A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZHGI A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09664 isolate_name= ZHGI A.1 BASE COUNT 308 a 392 c 539 g 235 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spYS38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. YS38. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. YS38. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15062 isolate_name= YS38 BASE COUNT 306 a 387 c 532 g 233 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GRGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-NNCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZHGIB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZHGIB A.4. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZHGIB A.4. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10071|g452148 isolate_name= ZHGIB A.4 BASE COUNT 307 a 391 c 540 g 235 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GYA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAGG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37520|g576922 isolate_name= ac-1 BASE COUNT 299 a 381 c 519 g 228 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUS-GGGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGUG-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-GC 481 AU-GUG---- ---------- -------G-U CA-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AU----G AU--UAAA-- ---GGGC--- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-SS- SU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CN-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCCNN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GCC-U--(- GAAA-)-GGG -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spOSRam4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. OS-Ramaley-4. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. OS-Ramaley-4. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58344 geog_source= Octopus Spring, Yellowstone National Park, USA isolate_name= OS-Ramaley-4 BASE COUNT 137 a 158 c 220 g 92 t 3769 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-NNN-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C WCG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCM-NH-WU 961 G-G-AG-G-A G-GAA-AG-C --(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GNNGA ---------) ------N-GG 1081 ---------- -------GGA U-GA-CGGU- AUCCN-A-GG U-WA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|...A 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCNA- 1441 -U-N-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- RU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CMG- ----GGUA-G UC----CAA- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-HG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-N----N CUUAC-G-GC -MU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CRA)CAGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spZFI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ZFI A.2. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ZFI A.2. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09662 isolate_name= ZFI A.2 BASE COUNT 306 a 390 c 540 g 233 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GRGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--GU----- ---------- ---------- 241 --------UU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CUAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CA-C--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GACG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -ACCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----CG G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--GU-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-GU-U-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGC-U-G-C- GA-CCC-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCGG-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spViI7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ViI7. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ViI7. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15061 isolate_name= ViI7 BASE COUNT 307 a 374 c 510 g 228 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A AGAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCA-G-GU (--UU----- ---------- ---------- 241 --------AU -)GC-CGUGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-CG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCG-CC 481 AU-GUG---- ---------- -------G-U CC-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-AG----G AC--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAU--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-WG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GUAUA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA GGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-UUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------A -CCUGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -GA----CCU 1981 -AGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---AU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-U-G-C- GA-CCC-A(G 2881 -UGA)UGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-UGGG A--GC-GGG- UU-CU-NNCC -GAA-G-UCG 3121 C-CGG-G--- -AN-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-NNG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spNMX2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. NMX2 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. NMX2 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09661 isolate_name= NMX2 A.1 BASE COUNT 313 a 390 c 534 g 233 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCA-G-GU (--UU----- ---------- ---------- 241 --------AU -)AC-C-UGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-CG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCG-CC 481 AU-GUG---- ---------- -------G-U CC-U--G--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -C-AG----G AC--UAAA-- ---GGGU--- ---------- 601 --(------- ---GGAU--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-UG 1021 --GG-GAC-- GA-AAGC-CC --C------( -----GUGUA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CCC-A-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA GGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-UUG -GGG------ ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---GGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquatic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. X-1 ATCC 27978. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. X-1 ATCC 27978. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS Weisburg,W.G., Giovannoni,S.J. and Woese,C.R. TITLE The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction JOURNAL Syst. Appl. Microbiol. 11, 128-134 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27978 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58340 (bases 1 to 1504) isolate_name= X-1 BASE COUNT 255 a 320 c 393 g 190 t 3218 others ORIGIN 1 .......... .......... .......... ...NUGGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-G....... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). ......G--C UAAUCCC-CC 481 AU-G...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| .UNGCN--N- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-NA- CGA------- -----CG-GN 781 N-NG-C-CN| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCU-NC-NU 961 G-G-AG-G-A G-GAA--N-N CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUUA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CNCNGUA-A) U-A-C-GGAG |-NGCN-C-- 1201 NAN-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-NNNC- GCG-CAG-GC -G|-GC-UU- 1261 G-GG-NNG|U CCC---AUGU G-AAA-UN-N CN-CGG-C(- UC-A)A-CCG -GG-G-AGA- 1321 -GGCN-NGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-NN-GAGGN NNG-N|NGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- --------UC -UGNGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-GG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GCC-N---(N C..)...... ..-GAAACUC -AAA-G.... .......... .......... 1861 .......... .......... ........GU -UUAAUU-CG .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACN-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGN--- UG-------- -C-CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|U--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GN-N A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-N-GC-C CUUAC-G-GC -CU--GGUC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-U-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUN- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquatic3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. YT-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. YT-1. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58343 isolate_name= YT-1 BASE COUNT 142 a 169 c 237 g 93 t 3735 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUHA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AN) -C-CCACN-W A|-GGC-GA- CGA------- -----YG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- HGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C WCG)--GGCN -NNN-C-UNN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCH-GC-WU 961 G-G-AG-G-A G-GAA--G-- -C(--UU-CG --)GG-GUGU AAA--CUCC| UNAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GANGA ---------) ------G-GG 1081 ---------- -------NNC U-GA-CGGU- A-CCG-G-NG U-AA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-W CC-GGGAGG- AA-G-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUN-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAH- G-CC-CU--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CWG -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ......GG-G A-CU-G-CCU --GC(-G--A AA)-GCH-G- -GAGG-A-AG 2761 G-HG-GGG-A YG-AYG--UC -U-NGUC-AU CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CNN)HAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGN- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.aquaticu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus aquaticus str. YT-1. ACCESSION No information KEYWORDS No information. SOURCE Thermus aquaticus str. YT-1. ORGANISM Thermus aquaticus. REFERENCE 1 AUTHORS ,K.M., Morgan,H.W. and Bergquist,P.L. Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges TITLE rRNA gene sequence data Phylogeny of twenty Thermus isolates constructed from 16S JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09663 isolate_name= YT-1 BASE COUNT 313 a 395 c 531 g 231 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--GU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CA U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CA-C--A--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-7. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-7. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37522|g576925 isolate_name= ac-7 BASE COUNT 303 a 384 c 512 g 229 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGUC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--UU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CG-C--A--- ---UCC-(-- --------UG 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC C-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--AC-UG GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-NCNCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -GA----CCU 1981 -AGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-CG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -CAA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GKG- UU-UU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spYSPID 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. YSPID A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. YSPID A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10070|g452147 isolate_name= YSPID A.1 BASE COUNT 312 a 396 c 529 g 233 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGUG-GG (--UU----- ---------- ---------- 241 --------AU -)CU-CACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CG-C--A--- ---UCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GU----G UU--UAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CUC--AC-AU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCU --GC(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAGAG CGA-G-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-G-GGC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spSPS14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. SPS14. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. SPS14. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15060 isolate_name= SPS14 BASE COUNT 294 a 394 c 456 g 183 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-GG (--UU----- ---------- ---------- 241 --------CG -)CC-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-G C-CCGG---A -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -CCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CC-G--G--- ---CCC-(-- --------C- 541 UG-------- -)-GGC---- -C-GU----G AC--UAAA-- ---GGCC--- ---------- 601 --(------- ----AAA--- ---)------ ---------| ---AGC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-C-GG-G-A C-GAA--G-C CC(--CU-CG --)GG-GUGU AAA--CCGC| UGAA--C-CU 1021 --GG-GAC-- GA-AAAC-CC --C------( -----CACAA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCA-G-GG U-AA--U-A. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -CGCG-CCGN A-UAC-GCCC G-GGCUA-GA CGG-----CG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--GC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-C-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---GGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-ACC -C-GGGG--- UG-------- -C-CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-G------ ----AA---| CCC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---GC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-G--A AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-GC -CA--CAAAG CGA-C-G-C- AA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAA-AAAA -GC-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CCA-C--- ----CC---- ---------- ---------- -----(---- CUACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----G-A G-GC-GC-CC A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spHS 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. HS A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. HS A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09670 isolate_name= HS A.1 BASE COUNT 304 a 418 c 532 g 218 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCUGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -C-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAA-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-A-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spFiji3A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Fiji 3A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Fiji 3A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10067|g452144 isolate_name= Fiji 3A.1 BASE COUNT 303 a 415 c 531 g 223 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)U -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGU--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---ACC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmoph27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB27. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB27. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09659 isolate_name= HB27 BASE COUNT 304 a 417 c 531 g 220 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.flavus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus flavus str. AT-62. ACCESSION No information KEYWORDS No information. SOURCE Thermus flavus str. AT-62. ORGANISM Thermus flavus. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09660 isolate_name= AT-62 BASE COUNT 304 a 417 c 531 g 220 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GAGGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmophl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8 ATCC 27634. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8 ATCC 27634. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27634 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58342|g48243 ATCC 27634 = NCIMB 11244 = DSM 579 isolate_name= HB-8 BASE COUNT 151 a 188 c 243 g 103 t 3691 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACH-W A|-GGC-GA- CGA------- -----HG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-H WCG)--GGCC -NNN-C-UHN -(NNHG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCH-UGA CGGA|-GCGA CGCH-NC-UU 961 G-G-AG-G-A A-GAA--G-C C-(--UU-CG --)GG-GUGU NAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --N------( -----GANGA ---------) ------G-GG 1081 ---------- -------GNC U-GA-CGGU- NNCCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|...A 1381 UU-HCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGWGG- AANS-SCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACYUK-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUW-G UC----CAN- G-CC-CU--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GY AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-Y AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GGGU A-CU-G-GCC --G-(----A AA)-NCG-G- -KAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-S-UAA-U CGCAN-WAAG -GU-G-GGN- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCNA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.flavus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus flavus str. AT-62 ATCC 33923. ACCESSION No information KEYWORDS No information. SOURCE Thermus flavus str. AT-62 ATCC 33923. ORGANISM Thermus flavus. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33923 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58341 isolate_name= AT-62 BASE COUNT 156 a 206 c 263 g 92 t 3659 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-H HHG)--GGCC -NNN-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-WGA CGGA|-GCGA CGCC-GC-WW 961 G-G-AG-G-A A-GAA--G-C NN(--NN--G --)GG-GNGU AAA--CNCC| NNRA--C-CC 1021 --GG-NNC-- GA-AACC-CN --N------( -----GAHGG A--------) ------G-GG 1081 ---------- -------NNC N-SA-CGGN- NNCCG-G-GG N-NA--N-NG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-NAGGG UNG-U|NGHA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUN-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CY--N 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CNN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)....GU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GH AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-C-- --GC(-G--A WW)-GCG-G- -GAGG-A-AG 2761 G-HG-GGG-A CG-ACG--UC -U-NGUC-AG CAU-N-G--C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-Y-G-C- CA-CCC-G(G 2881 -CAN)CGGG- ---------- GA-S-UAA-U CGCAN-AAAG -GY-G-GGH- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-SACCCCA -NGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GSA-(UC -AGCCAU)-G CCG-CGGNS- AAUAC-GNN- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thmophl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Hartmann,R.K., Wolters,J., Kroeger,B., Schultze,S., Specht,T. and Erdmann,V.A. TITLE Does Thermus represent another deep eubacterial branching? JOURNAL Syst. Appl. Microbiol. 11, 243-249 (1989) STANDARD No information REFERENCE 2 AUTHORS Hartmann,R.K. and Erdmann,V.A. TITLE Thermus thermophilus 16S rRNA is transcribed from an isolated transcription unit JOURNAL J. Bacteriol. 171, 2933-2941 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26923 (bases 557 to 2331) isolate_name= HB-8 BASE COUNT 311 a 428 c 545 g 237 t 2855 others ORIGIN 1 .......... .......... .......... ...UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GACGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C-AC -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.thermoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus thermophilus str. HB-8 ATCC 27634. ACCESSION No information KEYWORDS No information. SOURCE Thermus thermophilus str. HB-8 ATCC 27634. ORGANISM Thermus thermophilus. REFERENCE 1 AUTHORS Murzina,N.V., Vorozheykina,D.P. and Marvienko,N.I. TITLE Nucleotide sequence of Thermus thermophilus HB8 gene coding 16S rRNA JOURNAL Nucleic Acids Res. 16, 8172-8172 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27634 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X07998 ATCC 27634 = NCIMB 11244 = DSM 579 isolate_name= HB-8 BASE COUNT 310 a 425 c 544 g 236 t 2861 others ORIGIN 1 .......... .......... .......... ...UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-A CC-C--G--- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- -U-GU----G UC--CAAA-- ---GGGC--- ---------- 601 --(------- ----UUU--- ---)------ ---------| ---GCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --GG-GAC-- GA-AACC-CC --C------( -----GACGA ---------) ------G-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GG-GCG|U CCC---AUGU G-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCG-UGGG A-UAC-GCUC A-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CG-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UC-U-)- ---------- ---------- ---------- ---------C -CUGGG-GGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- -GGG------ ----AG---| CCC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -U-GGUC-AG CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-C--- -UA--CAAAG CGA-U-G-C- CA-CCC-G(G 2881 -CAA)CGGG- ---------- GA-GCUAA-U CGCAA-AAAG -GU-G-GGC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- CU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCC-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. ORGANISM 2.4.2.1.2 T.FILIFORMIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.filifor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus filiformis.. ACCESSION No information KEYWORDS No information. SOURCE Thermus filiformis. ORGANISM Thermus filiformis. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09667 BASE COUNT 309 a 386 c 537 g 243 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UCCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CUGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.filiform 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus filiformis str. WAI 33 A1 ATCC 43280. ACCESSION No information KEYWORDS No information. SOURCE Thermus filiformis str. WAI 33 A1 ATCC 43280. ORGANISM Thermus filiformis. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43280 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58345 isolate_name= WAI 33 A1 BASE COUNT 155 a 174 c 240 g 99 t 3708 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----CCNN-- AUG---G-|G CCCGC----- -GU|----CC C--AUHA-G- CUA-G---WW 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCN -NNN-C-UNN -(NNCG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-NN 961 G-G-AG-G-A G-GAA--N-N CN(--N--CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CN --N------( -----GANNN ---------) ------N-GG 1081 ---------- -------GGA N-GA-CGGU- A-CNG-G-GG U-AA--N-AG ---------N 1141 -GCNNGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG HGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CH-GGGAGG- AA-G-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUK-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GH-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAN- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CW-HNN -GG....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-CC--CCU- 2281 AGU-UWWC-C AG-CGG---- ---------- ---------- ---G(---WG ---WWN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----HHG|G 2701 N-NW-CU-N- N-NGG-GN-K A-CU-G-CGC --GW(-W--A UG)-CWW-G- -GWKG-A-WG 2761 G-UG-GGG-A UG-ACG--UC -U-NGUC-AU CAW-U-KG-C CUUAC-G-GC -CN--NGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)NAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-N-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spW28 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. W28 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. W28 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10068|g452145 isolate_name= W28 A.1 BASE COUNT 309 a 387 c 537 g 242 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok8 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok8 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09666 isolate_name= Tok8 A.1 BASE COUNT 310 a 386 c 536 g 243 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCU G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AAGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok20 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok20 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09665 isolate_name= Tok20 A.1 BASE COUNT 309 a 389 c 537 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------A -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spTok3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Tok3 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Tok3 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10069|g452146 isolate_name= Tok3 A.1 BASE COUNT 310 a 388 c 536 g 241 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-UC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------A -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCU 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAAAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CGGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spRt4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. Rt4 1A. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. Rt4 1A. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09669 isolate_name= Rt4 1A BASE COUNT 309 a 388 c 536 g 241 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCU-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGRG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAG-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spOK6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. OK6 A.1. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. OK6 A.1. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K.M ., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09668 isolate_name= OK6 A.1 BASE COUNT 311 a 389 c 535 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G AAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.spT351 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. T351. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. T351. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges,K .M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09671 isolate_name= T351 BASE COUNT 310 a 389 c 536 g 240 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GUGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCGGG-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UUCGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCGG---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUCCC-CC 481 AU-GUG---- ---------- -------G-U CG-U--G--- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- -U-GC----G AU--UAAA-- ---GGGU--- ---------- 601 --(------- ---GAAG--- ---)------ ---------| --AGCC--C- G--CUU---- 661 ----CCGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CCA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-UU 961 G-G-AG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUCC| UGAA--C-CC 1021 --AG-GAC-- GA-AAUC-CC --U------( -----GAUGA ---------) ------G-GG 1081 ---------- -------GGA U-GA-CGGU- A-CUG-G-GG U-AA--U-AG ---------C 1141 -GCCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GU-GCG|U CUG---GCGU U-AAA-GA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GGG- 1321 -UGCG-CUGG A-UAC-GGCC G-GGCUA-GA CGG-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGGAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 UCC--AC-CC GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-CU-CUG -GG------- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- ---------U -CUGGG-GGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGCG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-U ---AGGG--- -AA----CCC 1981 -GGG-U--(- GAAA-)-GCC -U-GGGG--- UG-------- -CCCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGGG------ ----AG---| CCU-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCC --GC(-G--A AA)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-AC -UA--CAGAG CGA-U-G-C- GA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CGCAA-AAAG -GU-A-GGC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GC-GGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CG A-GGGU-AGG GCU-CG-UG- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. ORGANISM 2.4.2.1.3 MEIOTHERMUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-17. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-17. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37523|g576923 isolate_name= ac-17 NB: non-confirming pattern at 1451r BASE COUNT 329 a 355 c 472 g 265 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------A-A CC-U--C--- ---AGC-(-- --------UG 541 UG-------- -)-GCU---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UG GUGACG-CUG AG-G------ -------CG- C-GAAA-GS- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- N-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAU-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CUUGCG ---------- ---------- -----(---- CGGGAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -----CGCGC -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.sp_ac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermus sp. str. ac-2. ACCESSION No information KEYWORDS No information. SOURCE Thermus sp. str. ac-2. ORGANISM Thermus sp. REFERENCE 1 AUTHORS Nold,S.C. and Ward,D.M. TITLE Diverse thermus species inhabit a single hot spring microbial mat JOURNAL Syst. Appl. Microbiol. 18, 274-278 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37521|g576924 isolate_name= ac-2 BASE COUNT 328 a 353 c 467 g 263 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------A-A CC-U--C--- ---AGC-(-- --------UG 541 UG-------- -)-GCU---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|C CGUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCGA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-GCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -CAA)CGGG- ---------- AA-GCCAA-U CGCAU-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- --GCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber str. Loginova 21 ATCC 35948. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber str. Loginova 21 ATCC 35948. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Bateson,M.M., Thibault,K.J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermus Species JOURNAL Syst. Appl. Microbiol. 13, 8-13 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35948 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58346 Former RDP Sids: T.ruber isolate_name= Loginova 21 NB: former name Thermus ruber BASE COUNT 168 a 172 c 217 g 110 t 3709 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... .GG|----CG C--AUHA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-H A|-GCC-GA- CGA------- -----CN-NG 781 U-AG-C-UN| -G-UCU--(K -AGA)-GGAC ----GA-U-- CAN-C|C-AC -AGGGG-U-A 841 (CUGA-NA-C ACG)--GACC -NNN-C-UCN -(NNHG)--G GAG-GC-AN- C-A---NU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C NN(-----CG --)GG-GUGU AAA--CUNC| UGAA--C-NC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGG UAG-C|GGAA 1381 UU-NCYNGA- GUA-GCG(-G USAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACD-CCAA- 1441 -U-N-GC(-G AA-A)GCAG- -CUWCCUN-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GN-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAN- G-CC-CN--N 1621 AAC-G-AUGA G--UG-CW-- -------G|G -GU-GU-CCG -NC------- ---------- 1681 -(-AU-CH)- ---------- ---------- ---------- ---------N -UUGGG-UGC 1741 CG--NA---- --SS-(UAA- ---C)G-CG- UHAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-N---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......G|G 2701 G-CW-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A WW)-GUW-G- -GAGG-A-AG 2761 G-HG-GGG-A UN-ACN--UC -U-NAUC-CG CAU-U-NC-C CUUAC-UGAC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- HA-GCCAA-U CGCAC-AAAA -GC-A-GGN- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber.. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Saul,D.J., Rodrigo,A.G., Reeves,R.A., Williams,L.C., Borges ,K.M., Morgan,H.W. and Bergquist,P.L. TITLE Phylogeny of twenty Thermus isolates constructed from 16S rRNA gene sequence data JOURNAL Int. J. Syst. Bacteriol. 43, 754-760 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09672 Former RDP Sids: T.ruber3 NB: former name Thermus ruber BASE COUNT 340 a 358 c 473 g 271 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------AU -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------G-A CA-U--C--- ---UAC-(-- --------UU 541 UG-------- -)-GUG---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- AA-GCCAA-U CGCAC-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- --ACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCU-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mei.ruber4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Meiothermus ruber str. Loginova 21 ATCC 35948. ACCESSION No information KEYWORDS No information. SOURCE Meiothermus ruber str. Loginova 21 ATCC 35948. ORGANISM Meiothermus ruber. REFERENCE 1 AUTHORS Embley,T.M., Thomas,R. and Williams,R. TITLE Reduced thermophilic bias in the 16S rDNA sequence from Thermus ruber provides further support for a relationship between Thermus and Deinococcus JOURNAL Syst. Appl. Microbiol. 16, 25-29 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35948 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z15059 Former RDP Sids: T.ruber4 isolate_name= Loginova 21 NB: former name Thermus ruber BASE COUNT 337 a 354 c 468 g 268 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGU-A -UGC-CU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-GU (--UU----- ---------- ---------- 241 --------AU -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-A C-CCCA---A -AGUC-U-GG 421 -GAC-AA-CU A--------- ------GG-- A(-GAAA-)U -CUUA-G--C UAAUCCU-GG 481 AU-GUG---- ---------- -------G-A CA-U--C--- ---UAC-(-- --------UU 541 UG-------- -)-GUG---- -G-AU----G UU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -AGGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UACC-GC-UU 961 G-A-AG-G-A C-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CUUC| UGAA--C-UC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CU- 1261 C-UC-AAG|U CCG---AUGC U-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GGG- 1321 -UGCG-UUGG A-UAC-UGUG A-GGCUA-GA CGG-----UC G-GA-GAGGG UAG-C|GGAA 1381 UU-UCCGGA- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A CC-GGAAGG- AACG-CCAA- 1441 -U-A-GC(-G AA-A)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--AU-UU GUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -GU-GU-CCG -AC------- ---------- 1681 -(-AU-CU)- ---------- ---------- ---------- ---------G -UUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACG C|C|A-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCC -G-GGGG--- UG-------- -CCC------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- -GGG------ ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-GAUC-CG CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGCC-U-GC -CA--CAAAG CGC-U-G-C- GA-CCC-G(G 2881 -UAA)CGGG- ---------- AA-GCCAA-U CGCAC-AAAA -GC-A-GGC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-GGG- UU-UU-GCCU -GAA-G-UCG 3121 C-CGG-G--- -NG-CC---- ---------- ---------- -----(---- --ACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GC-CU A-GGGU-AAG GCU-CA-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UNNCU-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.2-DE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.2 DEINOCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.2 DEINOCOCCUS_GROUP. ORGANISM 2.4.2.2 DEINOCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.prtlytic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus proteolyticus. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus proteolyticus. ORGANISM Deinococcus proteolyticus. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11331|g2108293 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 356 a 343 c 485 g 282 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- UGA--CCU-A C-CCCG---A -AGUU-C-UG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUACA-GG 481 AU-GCG---- ---------- -------C-A GU-A--U--- ---CGC-(-- --------UG 541 UG-------- -)-GCG---- -A-UA----C UG--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UGAA--C-UA 1021 --GG-GAC-- GA-AAGA-CG --C------( -----GUAA- ---------) ------G-CG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-A-GG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GC-UU- 1261 G-UU-AAG|U CUG---GUUU U-AAA-GG-C UG-AGG-C(- UC-A)A-CCU -CA-G-AAA- 1321 -UGGA-CUGG A-UAC-UGGC A-AGCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CC-UA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGUU-GGA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-CC-UUG ACA-UG|--- ---------C ---ACGG--- -AA----CGC 1981 -GCU-G--(- GAAG-)-CAG -C-GCGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCG-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-GU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG CGC-A-G-C- GA-ACU-U(G 2881 -UGA)GAGU- ---------- AA-GCGAA-U CGCUA-AAAG -CC-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGCU -GAA-A-CCG 3121 C-UGG-G--- -AG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiophl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiophilus. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiophilus. ORGANISM Deinococcus radiophilus. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11333|g2108295 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 343 c 489 g 285 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- UGA--CCU-A C-CCCG---A -AGUU-C-UG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUACA-GG 481 AU-GUG---- ---------- -------C-A GU-A--U--- ---CGC-(-- --------UG 541 UG-------- -)-GCG---- -A-UA----C UG--CAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G UU(--UU-CG --)GA-UUGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGG-GC --C------( -----UUUAU ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GG-AU- 1261 G-UU-AAG|U CCG---GUCU U-AAA-GA-C CG-CAG-C(- UC-A)A-CUG -CG-G-GAG- 1321 -UGGA-CUGG A-UAC-UGGC A-CUCUG-GA CCU-----CU G-GA-GAGGU AGC-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CA-GA-UCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGAU-UUG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-CC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CGC 1981 -CGC-G--(- GAAG-)-CGC -G-GCGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AAG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-GU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAACG CGC-A-G-C- AA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCUA-AAAG -CU-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGCU -GAA-A-CCG 3121 C-UGG-G--- -AG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGGU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiodu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiodurans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiodurans. ORGANISM Deinococcus radiodurans. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11332|g2108294 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 362 a 341 c 474 g 289 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAC- UGA--CCU-A C-CCAG---A -AGUC-A-CG 421 -AAU-AA-CU G--------- ------GC-- C(-GAAA-)G -GUCC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------G-U GA-U--G--- ---CAC-(-- --------CG 541 UG-------- -)-GUG---- -C-AU----C AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CUGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-GC --C------( -----UUAG- ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GA-AA- 1261 U-UU-AAG|U CUG---GUUU U-AAA-GA-C CG-GGG-C(- UC-A)A-CCU -CG-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGA U-UUCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGCU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UAGG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCU-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGU-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 A-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-U-AG -GA--CAACG CGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CGCUA-AAAC -CU-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGUU -GAA-A-CCG 3121 C-CGG-G--- -AG-CU---- ---------- ---------- -----(---- -UUGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GACU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiodur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiodurans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiodurans. ORGANISM Deinococcus radiodurans. REFERENCE 1 AUTHORS Weisburg,W.G., Giovannoni,S.J. and Woese,C.R. TITLE The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction JOURNAL Syst. Appl. Microbiol. 11, 128-134 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21413 BASE COUNT 365 a 351 c 483 g 303 t 2874 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAC- UGA--CCU-A C-CCAG---A -AGUC-A-UG 421 -AAU-AA-CU G--------- ------GC-- C(-GAAA-)G -GUCA-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------G-U GA-U--U--- ---UGC-(-- --------CG 541 UG-------- -)-GCA---- -A-AU----C AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CUGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-GC --C------( -----UUCG- ---------) ------G-GC 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CUG---GUUU U-AAA-GA-C CG-AGG-C(- UC-A)A-CCU -CG-G-GAG- 1321 -UGGA-CUGG A-UAC-UGGA U-GUCUU-GA CCU-----CU G-GA-GAGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-GCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGCU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UAGG--- -AA----GGC 1981 -GCU-G--(- GAGA-)-CAG -C-GCCG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCU-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--UCC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GG-G A-CU-G-CCU --GU(-G--A AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -GA--CAACG CGC-A-G-C- AA-ACA-U(G 2881 -UGA)GUGU- ---------- AA-GCGAA-U CGCUG-AAAC -CU-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AGA- UU-GC-AGUU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GACU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGU--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.radiopug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus radiopugnans. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus radiopugnans. ORGANISM Deinococcus radiopugnans. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11334|g2108296 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 357 a 355 c 485 g 272 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AGC -GC-GUGAC- UGA--CCU-G C-CCCA---A -AGUCCU-CG 421 -GAU-AA-CU G--------- ------GC-- U(-GAAA-)G -GUCA-G--C UAAUACG-GG 481 AU-GUG---- ---------- -------C-A GC-A--U--- ---CCU-(-- --------CG 541 UG-------- -)-UGG---- -A-UG----U UG--UAAA-- ---GG----- ---------- 601 --(------- --CUAUGA-- ---)------ ---------| -----C--C- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-CA-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-U|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CCCAAU-- GG-AC-(GAA A)-GUC-UGA GGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CU 1021 --GG-GAC-- GA-AAGA-CC --GC-----( -----GAAGA ---------) -----GC-GG 1081 ---------- -------AGA U-GA-CGGU- A-CCA-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GC-CU- 1261 G-CC-AAG|U CUG---GUUU U-AAA-GC-C UG-CGG-C(- UC-A)A-CCG -CA-G-AGA- 1321 -UGGA-CUGG A-GAC-UGGU A-GGCUA-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CC-UA-CAG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUUGU-GGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAUG--- -AA----CCC 1981 -CUG-A--(- GAGA-)-UCA -G-GGGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AG---| CAU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAC-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG CGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCCA-AAAG -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-AAA- UU-GC-AGCU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGG~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.grandis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus grandis. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus grandis. ORGANISM Deinococcus grandis. REFERENCE 1 AUTHORS Rainey,F.A., Nobre,M.F., Schumann,P., Stackebrandt,E. and daCosta,M.S. TITLE Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison JOURNAL Int. J. Syst. Bacteriol. 47 (2), 510-514 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y11329|g2108292 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 360 a 344 c 474 g 289 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAC- UGA--CCU-A C-CCCA---A -AGUC-G-CG 421 -GAU-AA-CG A--------- ------UU-- C(-GAAA-)G -AAUC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------C-U GU-U--C--- ---CAU-(-- --------CG 541 UG-------- -)-UUG---- -G-AU----C AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-CG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGA-CA --C------( -----UUUAU ---------) ------G-UG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAC-GC -G|-GA-CA- 1261 C-UU-AAG|U CUG---GUUU U-AAA-GA-C UG-CGG-C(- UC-A)A-CCG -CA-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGG U-GUCUU-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-CCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGGU-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---AUGG--- -AA----CUC 1981 -CUG-A--(- GAGA-)-UCA -G-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AG---| CCA-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -GA--CAACG CGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CGCUG-AAAC -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AAA- UU-GC-AGCU -GAA-A-CCG 3121 C-CGG-G--- -AG-CC---- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG----C-A G-GC-GU-CU A-GGCU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACU-GUAC C(GGA-A)GG UGCGGC--UG GA~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS D.spS34 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deinococcus sp. str. S34. ACCESSION No information KEYWORDS No information. SOURCE Deinococcus sp. str. S34. ORGANISM Deinococcus sp. REFERENCE 1 AUTHORS Mitsui,H., Hattori,R., Watanabe,H., Tonosaki,A. and Hattori,T. TITLE Salt-induced morphological change in salt-sensitive soil bacteria - fine structure of a bacterium S34 in relation to inorganic cation concentration - JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78365|g1100735 Former RDP Sids: str.S34 isolate_name= S34 BASE COUNT 328 a 313 c 426 g 260 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAC- UGA--CCU-A C-CCCA---A -AGUC-G-CG 421 -GAU-AA-CG A--------- ------UU-- C(-GAAA-)G -AAUC-G--C UAAUACG-UG 481 AU-GUG---- ---------- -------C-U GC-U--C--- ---CCU-(-- --------CC 541 UG-------- -)-UGG---- -G-AU----C AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGGG-- AUG---G-|G GUUGC----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GA 781 U-AG-C-CG| -G-CCU--(G -AAA)-GGGU ----GG-C-- CGG-C|C-AC -AGGGG-C-A 841 (CUGA-GA-C ACG)--GGUC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUC C-CACAAU-- GG-GC-(GAA A)-G-C-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GG-A-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CCUC| UGAA--U-CA 1021 --GG-GAC-- GA-AAGA-CA --C------( -----UUCG- ---------) ------G-UG 1081 ---------- -------GGA U-GA-CGGU- A-CCU-G-AG U-AA--U-AG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-CA- 1261 C-UU-AAG|U CUG---GUUU U-AAA-GA-C UG-CGG-C(- UC-A)A-CCG -CA-G-GGA- 1321 -UGGA-CUGG A-UAC-UGGG U-GUCUU-GA CCU-----CU G-GA-GAGAG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCUUG-- ---------- ---------- ---------G 1501 ACA--GA-AG GUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-AUGU A--CG-UU-- -------G|G -CU-AA-CCG -CA-G----- ---------- 1681 -(-GA-UG)- ---------- ---------- ---------- --------CU -GUGGU-UGG 1741 CG--AA---- ---C-(UAA- ---C)G-CG- AUAA-ACGUA C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UU-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---AUGG--- -AA----CUC 1981 -CUG-A--(- GAGA-)-UCA -G-GAGG--- UG-------- -C-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-G------ ----AA---| CCA-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCU --AU(-G--A AA)-GUA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -U-AGUC-AG CAU-G-GU-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -GA--CAACG CGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CGCUG-AAAC -CC-A-UCC- CCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.4.2.3-EN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. ACCESSION No information KEYWORDS No information. SOURCE 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. ORGANISM 2.4.2.3 ENVIRONMENTAL_CLONE_OS_M. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_M 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04708 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; ? Fibrobacter/Deino relative? BASE COUNT 69 a 82 c 85 g 53 t 4087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)..CCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--UCU- 2281 AG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCU --AC(-GC-A AG)-UAG-C- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-N-NC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GU -UA--CAACG GGU-U-G-C- UA-AG--N(N 2881 -CGA)GGCG- ---------- GA-GCUAA-U CCCUA-AAAG -GC-G-NCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGS-SC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5-PARAPH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5 PARAPHYLETIC_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5 PARAPHYLETIC_ASSEMBLAGE. ORGANISM 2.5 PARAPHYLETIC_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.1-SYNE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.1 SYNERGISTES_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.1 SYNERGISTES_ASSEMBLAGE. ORGANISM 2.5.1 SYNERGISTES_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_L 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04707 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; no specific relative yet BASE COUNT 253 a 278 c 358 g 186 t 3301 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( GU-AAU-GG) -N-NNACC-A A|-GGC-KA- NKW------- -----UC-GG 781 U-AG-Y-YN| -N-YYU--(N -NGW)-GKGC ----GG-U-- CNN-N|N-AC -ACUGG-N-A 841 (CUGA-AA-C ACG)--GGCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-- -C(--UU-CG --)GG-GUGU AAA--CUCC| UUUU-AG-UG 1021 --GG-GAC-- GA-------- ---------( -----ACGCA ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGC CC-GAAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 C-GU-AAG|U CUG---GUGU G-AAA-UC-U CA-CGG-C(- UC-A)A-CCG -GG-A-GGC- 1321 -UGCA-CCAG A-UAC-UGCG G-ASSUC-GA GGA-----CN G-GA-GAGGA GAU-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-UGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-UG CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UG-GGG-GA- 1561 GC-GNA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CCA- G-CC-CU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(AUU-AA)- ---------- ---------- ---------- --------CC -CUCGG-CGC 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CCGUGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUACAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- -------U-A ---CGAG--- CAA----CGC 1981 -UCU-G--(- CAAA-)-CAG -G-GCGCC-- UC-------G GUGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCACC---- ----GA---| CUC-GU-GGA |---C|A--C 2161 CG-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CCG --UG(-GU-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CN-ACG--UC -A-AGUC-AG CAU-G-GC-G GUUAC-G-UC -CA--GGGC- 2821 G-UCA-CA-C AUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- CA-ACG-C(G 2881 -CGA)GCGG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-A-CCC- UCAGUUGGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAACG-CG -GAAU-CGC- -UAGUA-ACG 3001 GC-GGG-(UC -AGCCAU)-A CCG-CCGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_I25 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone I25. ACCESSION No information KEYWORDS No information. SOURCE clone I25. ORGANISM clone I25. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67087 (bases 1 to 252) NB: ~10 nucs downstream of 478r removed BASE COUNT 199 a 180 c 263 g 156 t 3578 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... ...A-C-UCU -(ACAG)--G GAG-GC-NG- C-A---GU-C 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GHGA UGCC-GC-GU 961 G-RAGG-R-A U-CUGG-A-A GN(--UU-CG --)GN-GUGY AAA-CUCAC| UUUU-AG-UG 1021 --GG-GAC-- GA-A-MC-GC ---------( ------AARA ---------) ---C-SS-GU 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|G UAAA-GCGC- ACG-UAG-GC -K|-KC-UUU 1261 C-GU-AAG|U CUG---GUGU G-AAA-UC-U CA-CGG-C(- UC-A)A-CCG -AG-A-GGC- 1321 -UGCA-CCAG A-UAC-UGCG A-AGCUY-GA GNA-----CG G-GA-GAGGA GAU-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-UGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-N- -U-ACG-CUG AG-G------ -------UN- N-NAAA-GC- UG-GGG-GA- 1561 GC-GNA--A- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CCA- G-CC-CU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-UGG -GG-NN---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------CC -CUCA..... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .....U-GGA -UUAAUU-NG -(AUACAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- -------C-A ---CGAG--- AAA----CGY 1981 -YUU-A--(- GAAA-)-UAG -G-GCGCC-- UC-------G GUGGG----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCACC---- ----GA---| CCC-GU-GGA |---C|A--C 2161 CG-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-G-UGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC A-CCC-UU-G |-UC...... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CUG --UG(-GU-C AA)-CAC-UG -GAGG-A-AG 2761 G-UG-GGG-A MG-ACG--UC -A-AGUC-AG CAU-G-GM-G GUUAC-G-UC -CA--GGGC- 2821 GGUCA-CA-C AUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- CA-AAG-C(G 2881 -CGA)GCGG- ---------- GA-GCGAA-U CCCAA-AAAA -CY-A-CCC- UCAGUUGGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUCGG -UGAAGU-NG -GAAU-AGC- -UAGUA-AUG 3001 GN-GGG-(UY -AGN-AU)-A NCG-NCGUG- AAUAN-GUU- NNN-NGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1093 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1093. str. SBR1093. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1093. str. SBR1093. ORGANISM str. SBR1093. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84521|g871642 isolate_name= SBR1093 BASE COUNT 101 a 100 c 136 g 68 t 3971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -UGN-GU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AAGU---- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUUU---A -GGAC-U-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-C CA-C--A-GG ---UUC-(-- --------CA 541 UG-------- -)-GAA---C C-AGG----G GU--AAAA-- ---GGCGGCU ---------- 601 --(------- ---UUCG--- ---)------ ---------| GGCUGU--C- A--CCA---- 661 ----AAAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- AGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(U -AGC)-GGGU ----GA-U-- CGG-C|C-AC -ACGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCAA UACC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN55 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN55.. ACCESSION No information KEYWORDS No information. SOURCE clone UN55. ORGANISM clone UN55. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63623 BASE COUNT 75 a 58 c 107 g 66 t 4070 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U CAG---CUGU A-AAA-GG-C GG-GGG-C(- UC-A)A-CCC -CU-G-UAU- 1321 -GUCG-GCUG A-UAC-UGCG A-GCCUA-GA GUA-----UG U-GA-GAGGG AAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAC--AU-AA CUGACG-CUC AU-N------ -------UG- C-GAAA-N-- UA-GGG-UA- 1561 GC-GAA-CG- -GA(AUUA-G AUAC)-UCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UG-UC---- ---------- 1681 -(-GA-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sng.jonesi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synergistes jonesii str. 78-1 ATCC 49833 (T). ACCESSION No information KEYWORDS No information. SOURCE Synergistes jonesii str. 78-1 ATCC 49833 (T). ORGANISM Synergistes jonesii. REFERENCE 1 AUTHORS Allison,M.J., Mayberry,W.R., McSweeney,C.S. and Stahl,D.A. TITLE Synergistes jonesii, gen. nov., sp. nov.: A rumen bacterium that degrades toxic pyridinediols JOURNAL Syst. Appl. Microbiol. 15, 522-529 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49833 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08066 isolate_name= 78-1 BASE COUNT 343 a 311 c 436 g 245 t 3041 others ORIGIN 1 .......... .......... .......... .....AACGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACNC-AUGCN A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GAUC AUGUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGAC AUNAUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--CUU-G U-CAGU---U -ACSG-G-GG 421 -GAC-AA-CG G--------- ------AU-- G(-GAAA-)C -GUCA-G--C UAAUACC-CC 481 AU-AAG---- ---------- ---------- ---------- ----CC-(-- --------GA 541 GA-------- -)-GG----- ---------- -U--AAAA-- ---GGA---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----ACNG-- AGA---G-|A CUCGC----- -GU|----UC C--AUCN-G- CUA-G---UU 721 GG-AG-GG-( GU-AAA-GG) -C-CCUCC-A A|-GGC-GA- AGA------- -----CG-GA 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CGG-C|C-AC -NUUGG-A-A 841 (CUGA-GA-G ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- Y-N---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--A-U CC(--UU-CG --)GG-AUGU AAA--GCCC| UGUU-UU-GC 1021 --GG-GAA-- GA-A------ ---------( -----GCGAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-NA G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UGAA-GCGC- ACG-CAG-GC -U|-GA-UA- 1261 A-UC-AAG|U CGG---CUGU A-AAA-GG-C AG-AGG-C(- UN-A)A-CCU -UU-G-CAU- 1321 -CACA-GUUG A-AAC-UGAU A-AUCUA-GA GUA-----UG U-GA-GAGGG AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAC--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- CA-GGG-CA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------G|G -GU-GU-GGG -GU-AA---- ---------- 1681 -(-GC-AG)- ---------- ---------- ---------- -------UUA -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUGUC C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -MAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGU -UUAAUU-CG -(AUGCAA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACM-UA|--- ---------C ---UACU--- -GU----UAC 1981 -UUG-A--(- GAGA-)-GAU -C-GAGAGG- AC-------- CUUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAAG----- ----GA---| GGU-AG--AA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--GCC- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- C-GGC-GA-G A-CU-G-C-G --CC(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU NAU-G-GC-C UAUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAA GGC-A-G-C- UU-GCC-A(G 2881 -CGA)UGGU- ---------- UG-GCGGA-U CCAGA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGAC- (UGCAAC-U- N)-GUCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAA)-G CUN-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2-LEPT 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. ORGANISM 2.5.2 LEPTOSPIRILLUM-NITROSPIRA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1-LE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1 LEPTOSPIRILLUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1 LEPTOSPIRILLUM_GROUP. ORGANISM 2.5.2.1 LEPTOSPIRILLUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. ORGANISM 2.5.2.1.1 LPP.FERROOXIDANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS17.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS17. ORGANISM clone cOS17. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86772|g870917 BASE COUNT 365 a 360 c 487 g 254 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---A CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CACC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GAU-GUC( A----GAACA -----C---) GGCA-UU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GN-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UNCC-AAAG A-GAC-UGGC A-GACUN-GA GGC-----UG G-GA-GAGNG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAAG-CCGG- 1441 -U-G-UC(-G AA-G)NCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-NC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-U--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-NCCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GN-CC A-AGGU-AUG GCC-GG---- UAA-UUGG-G 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum sp.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum sp. ORGANISM Leptospirillum sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79383 BASE COUNT 369 a 359 c 493 g 251 t 2904 others ORIGIN 1 .......... .......... .......... ..AAAUCUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUG-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---A CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GAU-GUC( A----GAACA -----C---) GGCA-UU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUA-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--S 1861 C-A--CA-AG CGGUGG.... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-U--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UUC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.LfLa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum sp. str. LfLa. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum sp. str. LfLa. ORGANISM Leptospirillum sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79386 (bases 1 to 321) isolate_name= LfLa BASE COUNT 209 a 200 c 274 g 155 t 3538 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......A-C ACG)--GGCN -DGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCN-GN-GU 961 G-U-GG-G-A A-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--CCNC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AA-GG --GGC-GUC( A----GAAUA -----C---) GGCG-CU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCN-N ACUCU-G..( .......... .........) ..A-C-AGAG |--U-G-C-- 1201 UAG-CGUUGU UC-G-AGUUA -CU-GG-C|G UUAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-U-G-C(- UU-A)A-CCA -UG-G-KAA- 1321 -UGCC-AAAG A-GAC-UGGC N-GACUN-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUK-- ---------- ---------- ---------G 1501 AAC--AG-GC CUKACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UD-AA)- ---------- ---------- ---------- -------ACC -UCCND-UGC 1741 CG--CA---- --GC-(DAA- ---C)G-CA- GUAA-GUACC N|N|G-CCU- A-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .CG-UCA|-- C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 -G-G-(UUCA -GU)-CCCKC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C DC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-CD-CU-C- U-GAG-GG-N A-CU-G-CCA --GC(-KA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU YAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-C-G-C- GA-GAC-C(G 2881 -AGA)GGUD- ---------- GA-GCAAA-U CCGAG-AAAG -CC-D-NWN- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- N)-GACCUNA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUN- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE The biotechnological importance of molecular diversity studies for metal bioleaching JOURNAL (in) Priest,F.G., Ramos-Cormenzana,A. and Tindall,B.J. (Eds. ); BACTERIAL DIVERSITY AND SYSTEMATICS (FEBS SYMPOSIUM NO. 75): 259-273; Plenum Press, New York (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72852|g899312 BASE COUNT 370 a 360 c 496 g 251 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-CGAC 121 G--NG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-GCC( U----GAAUA -----A---) GGUC-AC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-C--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- AA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUN- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG-AU- UAA-UUGG-G 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS4.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS4. ORGANISM clone cOS4. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86770|g870915 BASE COUNT 353 a 359 c 487 g 247 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-N C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GNC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAN-C|C-AC -ACUGG-C-N 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GCA A)-CCC-UGA CNCA|-NCAA CNCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-NC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-GCC( U----GAAUA -----A---) GGUC-AC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-CU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GANACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUANUU-CG -(ACGCAA-C G)--CGANGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGG 1981 -AAC-C--(- GANN-)-GGG -G-ACCGA-- CC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G N-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AN-NCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG-AU- UAA-UUGG-G 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS7.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS7. ORGANISM clone cOS7. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86773|g870918 BASE COUNT 335 a 325 c 456 g 229 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UGA--UCU-G C-CCUG---G -AGAU-G-GG 421 -GAU-AU-CC C--------- ------UC-- C(-GAAA-)G -GGGG-G--G CAAUACC-GA 481 AU-AGU---- ---------- -------A-U CC----G-GU ---UCC-(-- -------GUG 541 AA-G------ -)-GGG---G CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GUA---- ---)------ -----CA-A| -GCUUC--C- G--CUC---- 661 ----CUGG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CCCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GC-CC 1021 --GG-GAC-- GA-A-AG-GG --GGG-ACC( U----GAAUA -----A---) GGUU-GC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-CU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GN-C CG-UGG-C(- UU-A)A-CCA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GACUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-GGG -AG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -UCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------C ---GCGA--- GUA----GGA 1981 -AAC-C--(- GAAA-)-GGG -G-ACCGA-- CC-------- ---GG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CA G-)------- UCC------- ----GG---| AAG-CG-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UUG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUC- 2281 UG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGNC-C-GG -UA--CAGAC GGA-A-G-C- AA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferroo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans str. Z2 ATCC 29047. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans str. Z2 ATCC 29047. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29047 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79443 (bases 1 to 316) ATCC 29047 = DSM 2705 isolate_name= Z2 NB: ATCC lists the strain for ATCC 29047 as l15 not Z2 BASE COUNT 217 a 219 c 301 g 175 t 3464 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ...UUU--C- G--CCU---- 661 ----UCCG-- AUG---A-|- CCCAU----- -GG|----CC C--AUCM-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACN-N A|-GGC-UN- CGA------- -----CG-GG 781 U-CG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|N-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCN -AGA-C-UCC -(NNNG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCNC| UUUU-GC-AC 1021 --GG-GAC-- GA-A-AA-AG --GGA-UAU( C----GAACA -----A---) AUAU-CC-CN 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-GA G-AA--UAAG ---------C 1141 -CACGGCN-N ACUCU-G..( .......... .........) .......... |......... 1201 .......... .......... .CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UAG-C(- UU-A)A-CUA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GGCUN-GA GGC-----UG G-GA-GAGGG NAG-C|GGNA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AASG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(ACCA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GA-UGG -AG-GG---- ---------- 1681 -(GUU-AA)- ---------- ---------- ---------- -------ACC -CUCCG-UGC 1741 CG--CA---- --GC-(MAA- ---C)G-CR- GUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCN -GU)-CCCGC WU-------- CGAG-C--GC NACCC-UC-G |-CN--NUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAG-GG-N A-CU-G-CCA --GC(-GA-C UA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -U-AGUC-AU CWU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 C-YCY-YY-C GUG--CYACY AUGGC-C-GG -UA--CUGAC GGA-G-G-C- AA-UGC-C(G 2881 -AGA)GGCG- ---------- GA-GCUUU-C CCGAG-AAAA -CC-G-GUC- CYYGUUCGGA 2941 U-UGAGGUC- (UGCYAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -WGA-AC)-G AUG-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpp.ferro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospirillum ferrooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Leptospirillum ferrooxidans. ORGANISM Leptospirillum ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86776|g871397 BASE COUNT 378 a 354 c 481 g 268 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCAN- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGG- UGA--UCU-A C-CUUA---G -GGAU-G-GG 421 -GAU-AU-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--G CAAUACC-GA 481 AU-AUU---- ---------- -------G-U CC----G-GA ---GCC-(-- -------GUG 541 AA-G------ -)-GGU---U CC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---AUA---- ---)------ -----CA-A| -GCUUU--C- G--CCU---- 661 ----UAAG-- AUG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-CG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CNCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCAC| UUUU-GC-AC 1021 --GG-GAC-- GA-A-AA-AG --GGA-UAU( C----GAACA -----A---) AUAU-CC-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-GA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UC-AAG|U CUU---UGGU G-AAA-GG-C CG-UAG-C(- UU-A)A-CUA -UG-G-GAA- 1321 -UGCC-AAAG A-GAC-UGGC A-GGCUG-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|N -GU-GU-GGA -GG-GG---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------ACC -CUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-UGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|U-- ---------G ---GUGA--- GUA----GCG 1981 -AAC-C--(- GAAA-)-GGG -G-AGCGA-- CC-------- ---CG----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- UCG------- ----GG---| CCA-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-C AA)-GUU-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-G-G-C- AA-UGC-C(G 2881 -AGA)GGCG- ---------- GA-GCAAA-C CCGAG-AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGA-AC)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- UU-GU-ACCC -GAA-G-UCG 3121 G-UGC-C-UU -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGA-G-A G-CC-GC-CC A-AGGU-AUG GCC-GA-UG- --A-UUGG-C 3301 G---UG.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.1.2 ENV.C0S62_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.1.2 ENV.C0S62_SUBGROUP. ORGANISM 2.5.2.1.2 ENV.C0S62_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS62 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS62.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS62. ORGANISM clone cOS62. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86774|g870919 BASE COUNT 358 a 347 c 475 g 271 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-CGAC 121 G--UG----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-UA--G GGUG-GCGA- 361 -A-CG-GG-U GAGU---AAG -AC-AUGGG- UAA--UCU-G U-CCCG---G -AGAU-G-GG 421 -GAU-AU-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--U UAAUACC-GA 481 AU-ACC---- ---------- -------G-C CC----G-GU ---GGA-(-- -------CGA 541 GA-G------ -)-UCC---A UC--G----G G---GAAAG- ---GGAGGC- CUC-UG---- 601 --(------- ---GCAA--- ---)------ -----CA-U| -GCUUC--C- G--CUC---- 661 ----CGGG-- AGG---A-|G CCCAU----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-GA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CNCA|-NCAA CCCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCAC| UUUU-GU-AA 1021 --GG-GAC-- GA-A-GU-CC --CUU-CGG( C----AAAUA -----A---) CCGA-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -CACGACU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAGUAA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 U-UC-AAG|U CUU---UGGU A-AAA-CA-C CG-UGG-C(- UC-A)A-CCA -UG-G-UUU- 1321 -GACC-AAGG A-GAC-UGGG A-GACUC-GA GGC-----UG G-GA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAAG- AAGN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 AAC--AG-AC CUGACA-CUG AG-A------ -------GA- C-GCAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGN A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACAC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|U-- ---------C ---CGGA--- AUU----CUG 1981 -CAG-A--(- GAUG-)-CGG -G--AGUG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GN-------- -----G--A| AUC-GGAACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 C-ACA-CA-C GUG--CAACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-GAC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCU -GAA-G-UCG 3121 G-UGC-C-CC -AA-CCG--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CC-GC-CC A-AGGU-AUG GCC-GG---- UAA-UUGG-U 3301 G---UG.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1108 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1108. str. SBR1108. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1108. str. SBR1108. ORGANISM str. SBR1108. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84534|g871655 isolate_name= SBR1108 BASE COUNT 100 a 86 c 130 g 68 t 3992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UAN-CU--A ACGC-AUGCA A-GUC-GAAC 121 G--GG----G GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUGAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UGAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-CU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CUUG---G -AGUG-G-GG 421 -AAU-AA-CG G--------- ------AC-- C(-GAAA-)G -GUUC-G--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UGAG-- AGG---A-|G CCUGC----- -GG|----CC G--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GG- GGA------- -----CC-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GUAA CGCC-GU-GU 961 G-A-GG-G-A A-GAA--G-A UU(--UU-CG --)GA-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2-NI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2 NITROSPIRA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2 NITROSPIRA_GROUP. ORGANISM 2.5.2.2 NITROSPIRA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2.1 NSP.MARINA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2.1 NSP.MARINA_SUBGROUP. ORGANISM 2.5.2.2.1 NSP.MARINA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira marina.. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira marina. ORGANISM Nitrospira marina. REFERENCE 1 AUTHORS Ehrich,S., Behrens,D., Lebedeva,E., Ludwig,W. and Bock,E. TITLE A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and its phylogenetic relationship JOURNAL Arch. Microbiol. 164 (1), 16-23 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82559|g971567 (bases 19 to 1521) BASE COUNT 385 a 358 c 491 g 269 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CGGUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGG---AAC -AC-AUGGG- UAA--CCU-G C-CCUU---G -AGAA-G-GG 421 -AAU-AA-CC C--------- ------GC-- C(-GAAA-)G -GUGA-G--C UAAUACC-CU 481 AU-ACG---- ---------- -------C-U AU-C-AU--U ---UUU-(-- --------AC 541 GA-------- -)-AAA---A ---GA----U AG--GAAA-- ---GCCAGG- ----UC---- 601 --(------- ---GAG---- ---)------ -----GA--| -UCUGG--C- A--CUC---- 661 ----AAGG-- AGG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AU-GA 1021 --GG-AAA-- GA-UAAA-GU --GG-----( ------GUAA ---------) -----CC-AC 1081 ---------- -------U-C A-GA-CGGU- A-CCU-C-AA G-AA--GAAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UG- 1261 G-GA-AAG|C CUU---UUGG G-AAA-UC-U CC-CGG-C(- UU-A)A-CCG -GG-A-AAG- 1321 -GUCG-AGAG G-AAC-UAUU C-AGCUA-GA GGA-----CG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--GU-AC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CC- -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UGG ACA-UG|C-- ---------U ---CGUG--- GUA----CGA 1981 -ACC-U--(- GAAA-)-GGG -U-GAGGA-- CC-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| AGC-GA-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-UC--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCC --AG(-GA-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-C-GG -UA--CAGAG GGU-U-G-C- AA-UCCCC(G 2881 -CAA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-G-GCC- UCAGUUCAGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAG- CU-GU-ACCA -GAA-G-UCA 3121 C-UGGCG-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CC A-AGGU-AUG GUU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira marina str. Nb-295. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira marina str. Nb-295. ORGANISM Nitrospira marina. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35501|g530902 isolate_name= Nb-295 BASE COUNT 370 a 335 c 470 g 261 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UCG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CGGUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGUG-GCAA- 361 -A-CG-GG-U GAGG---AAC -AC-AUGGG- UAA--CCU-G C-CCUU---G -AGAA-G-GG 421 -AAU-AA-CC C--------- ------GC-- C(-GAAA-)G -GUGA-G--C UAAUACC-CU 481 AU-ACG---- ---------- -------C-U AU-C-AU--U ---UUU-(-- --------AC 541 GA-------- -)-AAA---A ---GA----U AG--GAAA-- ---GCCAGG- ----UC---- 601 --(------- ---GAG---- ---)------ -----GA--| -UCUGG--C- A--CUC---- 661 ----AAGG-- AGG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AU-GA 1021 --GG-AAA-- GA-UAAA-GU --GG-----( ------GUAA ---------) -----CC-AC 1081 ---------- -------U-C A-GA-CGGU- A-CCU-C-AA G-AA--GAAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UG- 1261 G-GA-AAG|C CUU---UUGG G-AAA-UC-U CC-CGG-C(- UU-A)A-CCG -GG-A-AAG- 1321 -GUCG-AGAG G-AAC-UAUU C-AGCUA-GA GGA-----CG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--GU-AC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GU-UGG ACA-UG|C-- ---------U ---CGUG--- GUA----CGA 1981 -ACC-U--(- GAAA-)-GGG -U-GAGGA-- CC-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| AGC-GA-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-N |-UC--NNN- 2281 NG--UUGC-N AU-NGG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-NN-CU-N- U-NAA-NA-N A-CU-G-CCC --AG(-GA-U AA)-CNG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-C-GG -UA--CAGAG GGU-U-G-C- AA-UNC-N(G 2881 -CAA)GGGG- ---------- GA-GCNAA-U CUNAA-AAAA -CC-G-GCC- UNAGUUNAGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CNAA A--GU-CAG- CU-GU-ACCA -GAA-G-UCA 3121 C-UGGCG-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GU-GN-CC A-AGGU-AUG GUU-GG-UA- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.2.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. ORGANISM 2.5.2.2.2 NSP.MOSCOVIENSIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1015 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1015. str. SBR1015. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1015. str. SBR1015. ORGANISM str. SBR1015. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84460|g871581 isolate_name= SBR1015 BASE COUNT 98 a 96 c 133 g 75 t 3974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -NGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-NUGGG- UAG--CCU-A C-CCUC---G -AGU--G-GG 421 -AAU-AA-CU A--------- ------AC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------G-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2046 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2046. str. SBR2046. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2046. str. SBR2046. ORGANISM str. SBR2046. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84584|g871705 isolate_name= SBR2046 BASE COUNT 100 a 96 c 133 g 75 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------AC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------G-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GNC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1024 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1024. str. SBR1024. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1024. str. SBR1024. ORGANISM str. SBR1024. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84468|g871589 isolate_name= SBR1024 BASE COUNT 100 a 95 c 133 g 76 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGACG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CUUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------GC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-C UC-C----UG ---GUC-(-- --------UG 541 CG-------- -)-GAU---C G--GG----A GA--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAC A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsp.moscov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospira moscoviensis str. M-1 DSM 10035. ACCESSION No information KEYWORDS No information. SOURCE Nitrospira moscoviensis str. M-1 DSM 10035. ORGANISM Nitrospira moscoviensis. REFERENCE 1 AUTHORS Ehrich,S., Behrens,D., Lebedeva,E., Ludwig,W. and Bock,E. TITLE A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium, Nitrospira moscoviensis sp. nov. and and its phylogenetic relationship JOURNAL Arch. Microbiol. 164, 16-23 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 10035 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82558|g971568 isolate_name= M-1 BASE COUNT 366 a 377 c 509 g 277 t 2847 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGGCG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGCUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--CCU-A C-CCUU---G -AGUG-G-GG 421 -AAU-AA-CC A--------- ------GC-- C(-GAAA-)G -GUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-U UC-C----CG ---GAC-(-- --------UG 541 CG-------- -)-GUU---C G--GG----A AA--GAAA-- ---GCGUUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAGCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCC-| UUUC-GG-GA 1021 --GG-GAA-- GA-UGGA-AC --GG-----( ------GUAA ---------) -----CC-GU 1081 ---------- -------U-C G-GA-CGGU- A-CCU-C-CA G-AA--GCAG ---------C 1141 -CACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUCA -CU-GGGC|G UACA-GGGA- GCG-UAG-GC -G|-GU-UG- 1261 G-GU-AAG|C CCU---CCGU G-AAA-UC-U CC-GGG-C(- CU-A)A-CCC -GG-A-AAG- 1321 -UGCA-GAGG G-GAC-UGCU C-GGCUU-GA GGA-----UG G-GA-GAGGA GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 AAC--AU-UU CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-UU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|A -GU-GU-CGG -CG-G----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------CC -GCCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UGG ACA-UG|C-- ---------A ---CGUA--- GUA----GGA 1981 -GGA-U--(- GAAA-)-GUC -C-GACGA-- GG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CC---| AGC-GU-GCU |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UUC- 2281 AG--UUGC-C AC-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-GGA-GA-G A-CU-G-CCC --AG(-GA-G AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAG AGC-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-G-GCC- UCAGUUCAGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- UU-GU-ACCU -GAA-G-UCG 3121 U-CGACG-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GC-CC A-CGGU-AUG ACC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2016 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2016. str. SBR2016. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2016. str. SBR2016. ORGANISM str. SBR2016. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84560|g871681 isolate_name= SBR2016 BASE COUNT 99 a 92 c 133 g 79 t 3973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGN-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAGGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CACUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUGGG- UAA--UCU-A C-CAUC---G -AGUG-G-GG 421 -AAU-AA-CC A--------- ------AC-- C(-GAAA-)G -GUUG-G--C UAAUACC-GC 481 GU-ACG---- ---------- -------C-U UC-U-----G ---AGC-(-- -------CUU 541 CG-U------ -)-GUU---C ---GG----A AG--GAAA-- ---GCCGNA- ----CU---- 601 --(------- ---GUG---- ---)------ -----AG--| -UGCGG--C- G--CUC---- 661 ----UUUG-- AUG---A-|G CUCAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- G-A---GU-A 901 AGG-GAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1065 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1065. str. SBR1065. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1065. str. SBR1065. ORGANISM str. SBR1065. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84499|g871620 isolate_name= SBR1065 BASE COUNT 99 a 95 c 132 g 75 t 3975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A AUAC-NUGCA A-GUC-GAAC 121 G--------- -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAUGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CACAU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGG---ACU -AC-AUGGG- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU A--------- ------GC-- C(-GAAA-)G -GUUA-G--C UAAUACC-GC 481 GU-ACG---- ---------- -------C-C UC-C----UG ---GAC-(-- --------UG 541 CG-------- -)-GUU---C G--GG----A GG--GAAA-- ---GCGAUA- ----CC---- 601 --(------- ---GUG---- ---)------ -----GG--| -UAUCG--C- G--CUC---- 661 ----UUGG-- AUG---G-|G CUCAU----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-N|C-AC -ACUGG-C-A 841 (CUGC-GA-C ACG)--GGNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.3-TDV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. ORGANISM 2.5.3 TDV.YELLOWSTONII_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tdv.yellow 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermodesulfovibrio yellowstonii str. YP87 ATCC 51303 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermodesulfovibrio yellowstonii str. YP87 ATCC 51303 (T). ORGANISM Thermodesulfovibrio yellowstonii. REFERENCE 1 AUTHORS Henry,E.A., Devereux,R., Maki,J.S., Gilmour,C.C., Woese,C.R., Mandelco,L., Schauder,R., Remsen,C.C. and Mitchell,R. TITLE Characterization of a new thermophilic sulfate-reducing bacterium. Thermodesulfovibrio yellowstonii gen. nov. and sp. nov.: its phylogenetic relationship to Thermodesulfoacterium commune and their origins deep within the bacterial domain JOURNAL Arch. Microbiol. 161, 62-69 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51303 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14619 geog_source= Sedge Bay, Yellowstone Lake, YNP, Wyoming biol_source= hydrothermal vent water isolate_name= YP87 BASE COUNT 247 a 257 c 379 g 199 t 3294 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GN-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CCA GAAAUGG-AG (--GU----- ---------- ---------- 241 --------AA -)CU-UUAUU UCUNG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -YY-GUGGG- UNN--NCU-G C-CCUU---N -GGAG-G-AG 421 -GAU-AA-CN N--------- ------NG-- G(-GAAA-)C -CUNA..... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .....C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-NNA CCCA|-GCGA CGCN-GN-GU 961 G-N-GG-G-A A-GAA--G-G CN(--NN-CG --)NN-UUGU AAA--CNNN| -UUU-GC-AG 1021 --GG-GAC-- GA-C------ ---------( ------ACAG ---------) ---------- 1081 ---------- ---------- --GN-CGGU- A-CCC-N-GC G-AA--UAAG ---------C 1141 -CACGGC... .........( .......... .GCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 NAG-CGUUGC UC-GGAUUCA -CU-NNNN|N UAAA-GGGC- GCG-UAG-GU -G|-GU-UU- 1261 U-GU-AAG|U CUA---AGGU G-GAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-NAC- 1321 -UGCN-NNUG A-UAC-UGCA A-GGCUU-GA GUC-----AG G-NA-GAGGA GGG-C|GGNA 1381 UU-CCCGGU- GUA-GCG(-G UGNAA)-UGC -GU-AGAU-A UC-GGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -NNNNNUG-- ---------- ---------- ---------G 1501 GCC--NN-CA CUGACA-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -GU-CC---- ---------- 1681 -(-AU-AU)- ---------- ---------- ---------- -------NGA -CUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- UUNA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--NA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|C-- ---------U ---GGUG--- GUA----GGN 1981 -ACC-C--(- GAAA-)-GGG -N-GACGA-- CC-------U UAGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCUAA---- ----GG---| AGC-CAGNNA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-CU-A |-UC--CCC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CN-CU-C- U-G-G-GA-- A-CU-G-CCG --GC(-GA-C NA)-GCC-G- -GAGG-N-AG 2761 G-NG-GGG-N UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGG-C-GC -UA--UAGNG GGU-A-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GA-GCCAA-U CCCNA-NAAA -GC-G-CNC- NCNGUNGGGN 2941 N-CGGAGUC- (UGCNAU-U- C)-GNCUCCG -UGAACC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-NN)-G GCG-CGGUN- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mgb.bavarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetobacterium bavaricum.. ACCESSION No information KEYWORDS No information. SOURCE Magnetobacterium bavaricum. ORGANISM Magnetobacterium bavaricum. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Van Gemerden ,H. and Petersen,N. TITLE Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment JOURNAL Appl. Environ. Microbiol. 59, 2397-2403 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71838|g434308 Former RDP Sids: Mb.bavaric NB: Genbank entry has wrongly named genus former name Methanobacterium bavaricum BASE COUNT 386 a 336 c 488 g 303 t 2863 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAUGAG-UC (--GC----- ---------- ---------- 241 --------AA -)GA-UUCAU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--UCU-G C-CUUC---A -GGAC-C-GG 421 -AAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUCCC-GG 481 AU-AAG---- ---------- -------A-C CA-C--G-GA ----UA-(-- --------GC 541 AA-------- -)-UG----A CU-GU----G GU--AAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--C- A--CCU---- 661 ----GGAG-- AUG---A-|G CCUGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-UCU--(G -AGG)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-GU-AG 1021 --GG-AAA-- GA-------- ---------( -----UGAUG ---------) ---------- 1081 ---------- ---------- A-CG-GUAC- C-UUA-C-GA ---A--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GUGG-C-- 1201 AAG-CGUUGC UC-GGAAUUA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U UUG---GGGU G-GAA-UG-C UC-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCC-UUGA A-AAC-UGUU U-AACUU-GA GUA-----AG C-GA-GGGGA UGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AAGG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCAG-- ---------- ---------- ---------G 1501 CGC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-AU-AGG -GC-UC---- ---------- 1681 -(-GA-UA)- ---------- ---------- ---------- -------GGG -UUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- AUAA-GUACC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|U-- ---------A ---AGUG--- GUA----GGA 1981 -GUC-C--(- GAAA-)-GGA -U-AACGA-- CU-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| AGC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CG-CU-C- U-GAG-AA-A A-CU-G-CCG --GC(-GA-U GA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- AA-GAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCU--AAAA -AU-A-GUC- UUAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ACU-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CU-GU-ACCC -GAA-G-CGG 3121 G-UGA-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CU-CA-CG A-AGGU-AUG GUA-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OPI-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone OPI-2.. ACCESSION No information KEYWORDS No information. SOURCE clone OPI-2. ORGANISM clone OPI-2. REFERENCE 1 AUTHORS Kopczynski,E.D., Bateson,M.M. and Ward,D.M. TITLE Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms JOURNAL Appl. Environ. Microbiol. 60, 746-748 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22045 BASE COUNT 338 a 306 c 479 g 284 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CUUAU GUCUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CU-GGAGG GUGUAAG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-A C-CCUU---A -AGAG-G-GG 421 -GAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------G-C CA-C--G-GG ----UU-(-- --------GG 541 GA-------- -)-UA----C UU-GU----G GU--AAAAG- ---GGUG--- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ---CAC--C- G--CUU---- 661 ----AGGG-- AUG---G-|G UCUGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- AGA------- -----CG-GG 781 U-AA-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-AU-AG 1021 --GG-GGC-- AA-------- ---------( -----UGGUG ---------) ---------- 1081 ---------- ---------- A-UG-GUAC- C-CUA-U-GA ---A--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GAGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|U UAAA-GGGN- GNG-UAG-GC -G|-GU-UA- 1261 U-AC-AAG|U CUG---UGGU G-GAA-UC-U CA-UGG-C(- UU-A)A-CCA -GG-G-GGC- 1321 -UGCC-GUGG A-AAC-UGUA U-GACUU-GA GUU-----GG U-GA-GGGGA AGG-S|GGAA 1381 UA-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGUAG- AAGG-CCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 CGC--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- G......... 1561 .......... ...(...... ....)..... .......... .......... ..CC-CU--A 1621 AAC-G-GUGG G--CA-UU-- -------A|G -GU-GU-GGG -GU-CU---- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- -------GGG -CUCUG-UGC 1741 CG--AA---- --GG-(GAA- ---A)C-CA- UUAA-AUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|U-- ---------U ---AGUG--- GUA----AGA 1981 -GGC-U--(- GAAA-)-GGC -U-GAUGA-- CC-------- UUGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CCUGG----- ----GG---| AGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUC- 2281 UG--UUGC-C CU-------- ---------- ---------- ---G(---CG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 G-AU-CU-C- U-GAG-GA-A A-CU-G-CCA --GC(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAGAG GGG-G-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCG--AAAA -GC-A-GUC- UCAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCC -GAA-G-UUG 3121 G-UGA-G-CU -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-CC-AA-CG A-AGGU-AUG GCC-GG-UA- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD65 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26252|g498457 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 67 c 79 g 60 t 4107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-A |-UC--CUC- 2281 UG--UUAC-U C--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GU-CU-C- U-GAG-GA-A A-CU-G-CCG --GC(-GA-U GA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AC -UA--CAGAG GGU-U-G-C- AA-UAC-C(G 2881 -CAA)-GUG- ---------- GA-GCCAA-U CCCU--AAAA -GU-A-UUC- GUAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAC-)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.5.4-VERR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. ORGANISM 2.5.4 VERRUCOMICROBIUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1064 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1064. str. SBR1064. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1064. str. SBR1064. ORGANISM str. SBR1064. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84498|g871619 isolate_name= SBR1064 BASE COUNT 103 a 91 c 130 g 79 t 3973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----G -----UG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGAGA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UAU---- --C|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUUGG- UGA--CCU-G C-CCCA---A -AGUG-U-GG 421 -AAU-AA-CA G--------- ------UC-- C(-GAAA-)G -GAUU-G--C UAAUACC-UC 481 AU-GUG---- ---------- -------G-U CA-U--C-GG ---GUU-(-- ---------U 541 AG-------- -)-AAA---C CG-GU----G AC--UAAA-- ---GCA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UGGG-- AGG---G-|G CCUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-G-GG| -A-CCU--(G -AGA)-GGGU ----GG-C-- CCC-C|C-AC -AAUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AUA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA GGCA|-GCAA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GA-UCGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD7 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26194|g498459 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 71 c 81 g 57 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CUU- 2281 AG--UUCC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CA-A-ACC --CU(-CU-U UG)-GGG-G- -UGGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG GAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-GG -UA--CAGAG GGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUCA-AAAC -CG-G--GC- CCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD50 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26237|g498441 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 79 c 83 g 55 t 4096 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .........( ......)... .......... .......... 481 .......... .......... .......... .......... ....(..... ....)..... 541 .......... .......... .......... .......... ....(..... .......... 601 .....).... .......... .|........ .......... .......... .......... 661 .......... ...|...... .......... .......... .........( .........) 721 .......... .|........ .......... .......... .........| ........(. 781 ....)..... .......... .......... .......... (......... ...)...... 841 .......... .(....)... .......... .......... .......... .......... 901 ......(... .)........ ...|...... .......... .......... .......... 961 .(........ .)........ .......... .......... .......... .......... 1021 ........(. .......... .....).... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... .......(.. 1141 .......... ......)... .......|.. .......... .......... .......... 1201 .......... .......... ........|| .......... .....|.... .......... 1261 .......... ...(....). .......... .......... .......... .......... 1321 .......... .......... ........|. .......... .......... (.......). 1381 .......... .......... .......... .......... (......).. .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... ......(... .......).. 1561 .......... .......... .......... .......... .......... .......... 1621 |......... .......... ...(.....) .......... .......... ..-------- 1681 -(.......( ........). .......... ..-------- -------... .......... 1741 .......(.. ..)....... .......... .......... ...|...... .......... 1801 .......... .......... .......... .......... .(........ .)........ 1861 .......... .......... .......... .......... .......... .......... 1921 .......).. .......... ......|... .........( .......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 ........). .......... .........| .......... .......... .......... 2101 .......... ....------ .......... .........| .......... |......... 2161 .(.......) .......... .......... .......... .....|.... .......... 2221 .......... .......... .......... .......... ....--CU-G |-UG--UCC- 2281 UG--UUGCUC CCGGUUU--- ---------- ---------- ----(---AC ---CCC--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGU|- 2701 G-CA-CU-C- U-GGA-CA-G A-CU-G-CCU --CG(-CUUA AA)-CGA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG GAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -UA--CAAAG GGC-U-G-C- GC-GGC-G(G 2881 -CAA)CGCA- ---------- GA-GCAAA-U CCUC--AAAA -CU-G-GGC- CCAGUUCAGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCA-GGG-CU UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD18 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26205|g498405 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 80 c 87 g 51 t 4093 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .........( .......... .......... .......... 241 .........) .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .|........ .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......(.. ....)..... .......... .......... 481 .......... .......... .......... .......... ..(....... ..)....... 541 .......... .......... .......... .......... ..(....... .......... 601 ...)...... .........| .......... .......... .......... .......... 661 .......... .|........ .......... .......... .......(.. .......).. 721 .........| .......... .......... .......... .......|.. ......(... 781 ..)....... .......... .......... ........(. .......... .)........ 841 .........( ....)..... .......... .......... .......... .......... 901 ....(....) .......... .|........ .......... .......... .........( 961 .........) .......... .......... .......... .......... .......... 1021 ......(... .......... ...)...... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... .....(.... 1141 .......... ....)..... .....|.... .......... .......... .......... 1201 .......... .......... ......|.|. .......... ...|...... .......... 1261 .......... .(....)... .......... .......... .......... .......... 1321 .......... .......... ......|... .......... ........(. ......)... 1381 .......... .......... .......... ........(. .....).... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... ....(..... .....).... 1561 .......... .......... .......... .......... .......... ........|. 1621 .......... .......... .(.....).. .......... .......... ..-------- 1681 -(.....(.. ......)... .......... ..-------- -------... .......... 1741 .....(.... )......... .......... .......... ...|...... .......... 1801 .......... .......... .......... .........( .........) .......... 1861 .......... .......... .......... .......... .......... .......... 1921 (....).... .......... ......|... .......(.. .......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 ......)... .......... .......|.. .......... .......... .......... 2101 .......... ....------ .......... .......|.. .......... |........( 2161 .......).. .......... .......... .......... ...|...... .......... 2221 .......... .......... .......... .......... ..----CU-G |-UU--UCC- 2281 UG--UUGC-C AC-CCC---- ---------- ---------- ----(GGCGA GAGUCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGA|- 2701 G-CA-CU-C- U-GGA-CA-G A-CU-G-CCU --CG(-CUUA AA)-CGA-G- -GAGG-A-AG 2761 G-UG-GGG-G UG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-GG -CA--CAAAG GGA-A-G-C- GA-GAC-C(G 2881 -UCA)GUGG- ---------- AG-CAAAU-C CCCG--AAAA -CC-G-GGC- CCAGUUCAGA 2941 U-CGUCGUC- (UGCAAC-U- C)-GACGGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUG 3001 GC-GCA-(UC -AGCUAC)-G GCG-CCGUG- AAUAC-GUU- CCC-AGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ver.spinos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Verrucomicrobium spinosum. ACCESSION No information KEYWORDS No information. SOURCE Verrucomicrobium spinosum. ORGANISM Verrucomicrobium spinosum. REFERENCE 1 AUTHORS Albrecht,W., Fischer,A., Smida,J. and Stackebrandt,E. TITLE Verrucomicrobium spinosum, a Eubacterium representing an ancient line of desendant JOURNAL Syst. Appl. Microbiol. 10, 57-62 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59722 (bases 1 to 228) BASE COUNT 122 a 108 c 172 g 105 t 3869 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......GU- G-UCG-C-NA C-GA--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GUCU-C-A 1201 AGG-CGUAGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UNG-GU -G|-GC-GU- 1261 G-GA-AAG|U CGG---AUGU G-AAA-UC-C GG-GGG-C(- UC-A)A-CCU -CC-G-AAU- 1321 -UGCG-UCCG A-UAC-UCCC A-UGCU--GA GAA-----CU G-GA-GGGGG AUC-U|GGAA 1381 UU-CUCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GAGAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGA- -GAUCCUG-- ---------- ---------- ---------C 1501 AGA--GU-AU CUGACA-CUG AU-G------ -------CA- C-GAAG-G.. .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ...C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGAAGUGC 1801 GGU-C---(G CGA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -A---CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACN-UG|--- -------C-A ---CUGU--- -GU----CGU 1981 -CGG-U--(- GAAA-)-GCC -G-GCUA--- GU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GC---| GCU-NN-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNA. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.ogram1 4376 bp RNA RNA 02-JUL-1998 DEFINITION grassland soil. ACCESSION No information KEYWORDS No information. SOURCE grassland soil. ORGANISM grassland soil. REFERENCE 1 AUTHORS Lee,S.-Y., Bollinger,J., Bezdicek,D. and Ogram,A. TITLE Enumeration by quantitative PCR of a non-culturable soil bacterium JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U51864|g1297311 legacy_attribute= Universal primers 27F and 1406R used for amplification biol_source= Palouse silt loam soil geog_source= approx. 15 mi. N of Pullman, WA library_source= grassland soil sample approx. 15 mi. N of Pullman, WA BASE COUNT 339 a 326 c 436 g 278 t 2997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G AAAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUUU UUUCUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAGGG AAAAGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GCUU---AAC -AC-GUGGG- C-AA-CCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GC-- C(-GAAA-)G -GCGA-A--U UAAUACC-GC 481 AU-GUG---- ---------- -------A-U UA-GA-G--- ---AGG-(-- --------AC 541 AU-------- -)-CCU---- -UUCG---AA AU--UAAA-- ---GUCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGA--C- G--CUU---- 661 ----CUUG-- UGG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-AU-UG 1021 --GG-GAA-C AA-G-GU-GC --AUA-CGU( -----UAACU ---------) GCGU-GU-GU 1081 ---------- -------A-U U-GA-UAGU- A-CCC-G-AA G-AG--GAAG ---------G 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCC-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-GC- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCA-UUCG A-UAC-UGCC G-UGCUU-GA GGA-----CU G-GA-GAGGA GAC-U|GGAA 1381 UU-UACGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GUAAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACG-CUG AG-G------ -------CA- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GGG -AG-G----- ---------- 1681 -(-AU-UC)G ACC------- ---------- ---------- --------CC -UUCUG-CGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UCAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AUCU--- CUA----AGU 1981 -UGG-U--(- GAAA-)-GCC -A-GCGAG-- UC-------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA-CA| AUU-UG--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--AAC- 2281 UG--UUGC-C AC-CGAGCC- ---------- ---------- ----(----G ---UGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GGCUCG|A 2701 G-CA-CU-C- U-GUU-CA-G A-CU-G-CCC --CG(-CUUU AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -CA--CAGAA CGA-U-C-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GGAAA-U C-ACU-AAAA -CU-G-GGC- CCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 GC-GUA-(UC -AGCUAC)-G ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE19 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26269|g498387 library_source= unidentified soil bacterium from soybean field BASE COUNT 67 a 73 c 84 g 57 t 4095 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .......... (......).. .......... .......... 481 .......... .......... .......... .......... .....(.... .....).... 541 .......... .......... .......... .......... .....(.... .......... 601 ......)... .......... ..|....... .......... .......... .........| 661 .......... ....|..... .......... .......... .......... (......... 721 )......... ..|....... .......... .......... .......... |........( 781 .....).... .......... .......... .......... .(........ ....)..... 841 .......... ..(....).. .......... .......... .......... .......... 901 .......(.. ..)....... ....|..... .......... .......... .......... 961 ..(....... ..)....... .......... .......... .......... .......... 1021 .........( .......... ......)... .......... ......---. .......... 1081 .......... .......... .......... .......... .......... ........(. 1141 .......... .......).. ........|. .......... .......... .......... 1201 .......... .......... ........|. |......... ......|... .......... 1261 .......... ....(....) .......... .......... .......... .......... 1321 .......... .......... .........| .......... .......... .(.......) 1381 .......... .......... .......... .......... .(......). .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......(.. ........). 1561 .......... .......... .......... .......... .......... .......... 1621 .|........ .......... ....(..... )......... .......... ..-------- 1681 -(........ (........) .......... ..-------- -------... .......... 1741 ........(. ...)...... .......... .......... ...|...... .......... 1801 .......... .......... .......... .......... ..(....... ..)....... 1861 .......... .......... .......... .......... .......... .......... 1921 ..(.....). .......... ......|... .......... (......... ...----... 1981 .......... .......... .......... .......... .......--- --........ 2041 .........) .......... .......... |......... .......... .......... 2101 .......... ....------ .......... .......... |......... |......... 2161 ..(....... )......... .......... .......... ......|... .......... 2221 .......... .......... .......... .........( ......CU-G |-UG--AAC- 2281 UG--UUGC-C AC-UCC---- ---------- ---------- ----(CUUGA U--UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GAA|- 2701 G-CA-CU-C- U-GUU-CA-G A-CU-G-CCC --UG(--UGA AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGCC-C-AG -UA--CAGAA CGA-U-C-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GGAAA-U C-UAGUAAAA -CU-G-GGC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUG 3001 CC-GUA-(UC -AGCUAC)-G ACG-GCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6-NITROS 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6 NITROSPINA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.6 NITROSPINA_SUBDIVISION. ORGANISM 2.6 NITROSPINA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.1-HP.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.1 HP.FOETIDA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.6.1 HP.FOETIDA_ASSEMBLAGE. ORGANISM 2.6.1 HP.FOETIDA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A39 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A39.. ACCESSION No information KEYWORDS No information. SOURCE clone A39. ORGANISM clone A39. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08392|g475612 BASE COUNT 100 a 107 c 154 g 80 t 3935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ---------- ---------) ---------- 1081 ---------- ---------- ---A-CGGU- C-UGU-CGGC G-AA--UAAC .......... 1141 .......... .........( .......... .........) .......... |....G-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-AU- 1261 G-GC-AAG|U CAA---AGGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCC C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(GUC-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A40 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A40.. ACCESSION No information KEYWORDS No information. SOURCE clone A40. ORGANISM clone A40. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08393|g475613 BASE COUNT 105 a 113 c 157 g 82 t 3919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-GU 1021 --GG-GAA-- GA---AC-GG -UCUG-UCG( G---CGAAUA A----C---) UGGC-AG-UC 1081 ---------- -------C-U U-GA-CGGU- A-CCA-C-CA A......... .......... 1141 .......... .........( .......... .........) .......... |......C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-AU- 1261 G-GC-AAG|U CAA---AGGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCC C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(GUC-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--AA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGA.... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB36 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15118|g710324 library_source= Pele's Vents Bacterium DNA BASE COUNT 224 a 239 c 359 g 185 t 3369 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--- AGAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- U-AA-CCU-A C-CCAA---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--G UAAUACC-GC 481 AU-GUG---- ---------- -------U-C CC-A--A-CC ---GGC-(-- --------GC 541 AG-------- -)-GCU---G GU-UG----G GA--GAAA-- ---GAUGGG- GA--UCC--- 601 --(------- ---UUCG--- ---)------ ----GGA--| -CCUGU--C- G--CUU---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UGUC-AG-AU 1021 --GG-GAA-- GA-A-GG-CC --UUG-UUG( G----UUAAU AG---C---) CUUC-GA-GG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-AG- 1261 G-GU-AAG|U CAA---AGGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCU C-UGCUU-GA GUC-----CG G-GA-GGGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CU-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GUG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -UGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UU|--- ---------G ---AGAGA-- --A----CCU 1981 -GCC-A--(- GAGA-)-UGG -C-GGGGU-- GC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| AAC-UC.... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_K 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04711 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:periph. relat. C.thmaceti group BASE COUNT 302 a 349 c 458 g 243 t 3024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-UAUC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGCCCG-GU (--GC----- ---------- ---------- 241 --------AA -)CC-CGCGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GYGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCAG---G -AGAG-G-GG 421 -GAU-AG-CC C--------- ------CG-- C(-GAAA-)G -UGGG-G--G UAAUACN-G- 481 -U-ACG---- ---------- -------C-U CU-C--C-GG ---UGC-(-- --------AC 541 AA-------- -)-GCG---C CG-GA----G AG--GAAA-- ---GGUGGG- NN--UCUUC- 601 --(------- ---UUCG--- ---)------ --G-GGN--| -CCUGC--C- G--CUC---- 661 ----CUGG-- AUG---G-|G CCCN------ -GU|-----C C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UGUC-AG-GG 1021 --GG-NAC-- GA-ACGC-GU --CCC-GGU( -----GAACA ---------) GCCG-GYGYG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-N-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GYGY- GYG-CAG-GU -G|-GC-UG- 1261 G-GU-AAG|U GGC---AGGU G-AAA-UC-C CU-UGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCC-UGCC A-AAC-UGCU C-UGCUU-GA GGC-----CG G-GA-GGGGG UAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GG-UU AUGACA-CUC AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GC-GU-CGC -GG-GUG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -UGCNG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACNGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG AAC-UG|--- ---------C ---UGGGG-- -AC----CGU 1981 -UCU-G--(- GAGA-)-CAG -A-AUCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| UCC-AG-CAG |----|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--RC AACCC-UU-N |-CC--CCU- 2281 AG--UUGC-C AR-CRG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AN 2761 N-NN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)N-GG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-N-NCC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AC)-G ACN-CGGUG- AAUAC-GUU- CCC-NNN-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s18 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s18. str. s18. ACCESSION No information KEYWORDS No information. SOURCE str. s18. str. s18. ORGANISM str. s18. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69322|g1181104 isolate_name= s18 BASE COUNT 103 a 76 c 96 g 76 t 4025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-ACCU-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -U|-GU-UA- 1261 U-AU-AAG|U UAG---UGGU U-AAA-UC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAC- 1321 -UGCC-ACUA A-AAC-UGCA U-GACUA-GA GGC-----UG G-GA-GAGGC AAA-C|GGAA 1381 CU-GCAGGU- GUA-GUA(-G UAAAA)-UGC -GU-UGAU-A UC-UGCAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -UUUGCUG-- ---------- ---------- ---------G 1501 AAC--AG-UC CUGACA-CUC AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-AU-UGC -GA-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CU -CGCAG-UGC 1741 CG--UUCAAA AAAC-(UAA- ---C)G-CG- UUAA-GUGCA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A8 4376 bp RNA RNA 02-JUL-1998 DEFINITION gram-negative anaerobic. ACCESSION No information KEYWORDS No information. SOURCE gram-negative anaerobic. ORGANISM gram-negative anaerobic. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G.W. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08397|g475617 library_source= gram-negative anaerobic sulfate-reducing bacterium BASE COUNT 113 a 112 c 163 g 93 t 3895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-A-CC-UG --UAA-AGU( G---CCAAUA C----C---) A......... 1081 .......... .......... .......... .......... .......... .......... 1141 ......CU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-AU-AAG|U CGA---AAGU G-AAA-UC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCU-UUCG A-AAC-UGUC U-GGCUA-GA GAA-----UG G-GA-GGGGG CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--AU-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------C|G -AU-GC-CGC -GG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CC -UGCGG-UGU 1741 CU--UA---- --GU-(UAA- ---C)G-CG- AUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hp.foetida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Holophaga foetida str. TMBS4 DSM 6591 (T). ACCESSION No information KEYWORDS No information. SOURCE Holophaga foetida str. TMBS4 DSM 6591 (T). ORGANISM Holophaga foetida. REFERENCE 1 AUTHORS Liesack,W., Bak,F., Kreft,J.U. and Stackebrandt,E. TITLE Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methyloxylated aromatic compounds JOURNAL Arch. Microbiol. 162, 85-90 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6591 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77215|g534921 isolate_name= TMBS4 BASE COUNT 362 a 336 c 498 g 304 t 2876 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-NC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAU 121 G--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CAUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- AGA--CCU-A C-CUUU---U -UGUG-G-GG 421 -AAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GGAC-G--A UAAUACC-GC 481 AU-GAG---- ---------- -------A-C CA-C------ ---AGG-(-- ------AUUG 541 GA-UG----- -)-CCU---- ---GU----G GU--GAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CAA---- 661 ----GAAG-- AGG---G-|U CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACCC| UGUC-GU-CA 1021 --GG-GAC-- GA-AGGC-AU --GGG-AUU( -----GAAUA ---------) UUUC-CU-AU 1081 ---------- ------GC-U U-GA-CGGU- A-CCU-G-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -U-UGGGC|G UAAA-GGGC- GCG-UAGGCG -G|-UU-CU- 1261 U--U-AAG|U GAG---AUGU G-CAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUC A-UAC-UGGA G-AGCUA-GA GUG-----CU G-GA-GAGGG UGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AU-UAG AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------U|G -GU-GU-GGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -UGCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AAC-UG|--- ---------U ---AAUGG-- -AC----CGG 1981 -UGC-A--(- GAGA-)-UGU -G-CCUU--- UU-------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- G--------- ----AA--C| UGU-UA--CA |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GG-G A-CU-G-CCG --GG(--U-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAC CGU-G-C-C- GA-GGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CGGAG-AAAG -UC-G-CCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-CGAA A--GC-CGG- GA-GC-ACUU -GAA-G-AGG 3121 C-UGU-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-GG-UU-UC A-AUGGUGAA CUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gt.ferment 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Geothrix fermentans".. ACCESSION No information KEYWORDS No information. SOURCE "Geothrix fermentans". ORGANISM "Geothrix fermentans". REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41563|g1136552 BASE COUNT 346 a 329 c 483 g 289 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GGAU 121 G--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- CAUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-A C-CUCU---U -UGUG-G-GG 421 -AAU-AA-CG C--------- ------UC-- C(-GAAA-)G -GAGU-G--G UAAUACC-GC 481 AU-GAG---- ---------- -------A-C CU-U------ ---CGG-(-- ------CUGG 541 GA-UG----- -)-CUG---- ---GA----G GU--GAAA-- ---CCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--G- G--CAA---- 661 ----GGAG-- AGG---A-|U CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-AC-(GAG A)-GUC-UGA CGCA|-GCAA CSCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-CUGU AAA--ACCC| UGUC-GU-CA 1021 --GG-GAC-- GA-AGGU-GG --CAC-GAC( -----UAAUA ---------) AUCG-UG-UU 1081 ---------- ------AC-U U-GA-CGGU- A-CCU-G-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGGG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -U-UGGGC|G UAAA-GGGC- GCG-UAGGCG -G|-UU-UU- 1261 U--U-AAG|U CAG---AUGU G-UAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-UCUG A-GAC-UGGA A-GGCUA-GA GUA-----CU G-GA-GAGGG UGG-U|GGAA 1381 UU-CCUCGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AU-UAG AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------U|G -GU-GU-GGA -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AAC-UG|--- ---------C ---AGUGG-- -AC----CGG 1981 -UGC-A--(- GAGA-)-UGU -G-CCUU--- UU-------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- G--------- ----AA--C| UGC-UG--CA |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--CGU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-ACG-GG-G A-CU-GCCCG --GG(--U-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAC CGU-U-G-C- AA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCUAA-U CGGAG-AAAG -UC-G-UCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-C- C)-GACUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-CGAA A--GC-CGG- GA-GC-ACUU -GAA-G-AGG 3121 C-UGU-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-GG-UC-UC A-AUGGUGAA CUU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.2-ENV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.2 ENV.FIE12_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.6.2 ENV.FIE12_GROUP. ORGANISM 2.6.2 ENV.FIE12_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE12 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26264|g498382 library_source= unidentified soil bacterium from soybean field BASE COUNT 71 a 72 c 75 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUU- 2281 AG--UUGC-U AC-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --AC(-GC-A AG)-UAG-U- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-U-G-C- UA-AAC-C(G 2881 -CAA)GGUC- ---------- AU-GCCAA-U CUCUA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD8 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26195|g498460 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 73 c 79 g 57 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-C |-UC--UGU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-ACA-GA-G A-CU-G-C-G --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAGAA GGU-U-G-C- AA-GAC-C(G 2881 -CAA)GGUU- ---------- GA-GCUAA-U CCCCA-AAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD1 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26188|g498396 library_source= unidentified soil bacterium from paddy field BASE COUNT 75 a 68 c 77 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-A AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAAAG AGU-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 AC-UGA-(UC -AGC-AA)-G CAG-UGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD14 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26201|g498401 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 69 c 83 g 61 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-C |-UC--CUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-C-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-C-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GGCAA-U CCCAA-AAAA -CU-G-GUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD39 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26226|g498428 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 73 c 80 g 57 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CC-C- U-AAG-GG-A A-CU-G-UCG --GC(-GA-A AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAA-AAAC -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD55 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26242|g498446 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 70 c 82 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--UCC- 2281 UG--UUGC-U AA-CAG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-GGA-GG-A A-CU-G-CCG --GC(-GA-U AA)-GCG-G- -AAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE13 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26265|g498383 library_source= unidentified soil bacterium from soybean field BASE COUNT 68 a 71 c 81 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--UCC- 2281 UG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGU-C-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.3-ENVI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.3 ENVIRONMENTAL_CLONE_FIE17. ACCESSION No information KEYWORDS No information. SOURCE 2.6.3 ENVIRONMENTAL_CLONE_FIE17. ORGANISM 2.6.3 ENVIRONMENTAL_CLONE_FIE17. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE17 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26267|g498385 library_source= unidentified soil bacterium from soybean field BASE COUNT 64 a 76 c 86 g 53 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GC-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GU-C CUUAC-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -GA--CAGAG GGU-U-G-C- GA-GCC-G(G 2881 -CAA)CGCA- ---------- AA-GCCAA-U CCCGU-AAAC -CC-C-GCC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-C- C)-GACGGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCUAC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.6.4-NITR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.6.4 NITROSPINA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.6.4 NITROSPINA_GROUP. ORGANISM 2.6.4 NITROSPINA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s22 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s22. str. s22. ACCESSION No information KEYWORDS No information. SOURCE str. s22. str. s22. ORGANISM str. s22. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69326|g1181109 isolate_name= s22 BASE COUNT 88 a 70 c 114 g 71 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAU |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- AUG-UAG-GC -S|-GU-UU- 1261 G-AU-AAG|U CAG---GCGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCC -UG-G-AAA- 1321 -GCCG-UUUG A-AAC-UGUC A-AACUU-GA GUC-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GG-AA CUGACG-CUG AA-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GC-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -GUCUG-UGC 1741 CG--UA---- ---C-(UAA- ---C)G-CA- UUAA-GUGCC C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nts.gracil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospina gracilis str. Nb-3. ACCESSION No information KEYWORDS No information. SOURCE Nitrospina gracilis str. Nb-3. ORGANISM Nitrospina gracilis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35503|g530897 geog_source= Pacific Ocean isolate_name= Nb-3 BASE COUNT 345 a 304 c 397 g 258 t 3072 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ...UUU---N -AGAU-U-GG 421 -GAU-AA-CC U--------- ------NA-- C(-NAAA-)G -UNAG-G--C UAAUACC-GA 481 AU-AAN---- ---------- -------A-C CA-C--G-U- ---CUC-(-- --------AU 541 AA-------- -)-GAG---- AU-GC----G GC--AAAA-- ---GGAGU-- ---------- 601 --(------- ---CUCAA-- ---)------ ---------| --ACUC--C- A--CUC---- 661 ----AAAG-- AUG---A-|G UUCGC----- -GG|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AC----- ---------( ------ANAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCN-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUNA -UU-GGGC|G UAAA-GCGU- AUG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CAG---ACGU G-UAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUG A-AAC-UAUU C-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-UCCAGU- GUA-NCG(-G UGAAA)-UGC -GU-UGAU-A UU-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GN(AUUA-G AUAC)-CCN- ----NGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -NU-GU-AGG -AG-GU---- ---------- 1681 -(GUU-GA)U ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGNC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACU-UG|--- ---------C ---UUGG-G- ACC----GCC 1981 -UUG-G--(- AAAC-)-AAG -G-NNNN--- NC-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----GC---| CC--UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-AA-CU-C- U-AAA-GG-A A-CU-G-UCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CNNAA-AAAG -CC-G-GUC- UCAGUUNGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUN 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAA A--GC-CGA- NN-GN-ACCA -GAA-G-NGA 3121 C-NAN-G-NU -AA-CN---- ---------- ---------- -----(---- -NUNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A C......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nts.graci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrospina gracilis str. Nb-211. ACCESSION No information KEYWORDS No information. SOURCE Nitrospina gracilis str. Nb-211. ORGANISM Nitrospina gracilis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35504|g530898 geog_source= Atlantic Ocean isolate_name= Nb-211 BASE COUNT 364 a 332 c 447 g 294 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GNNC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- NGUGAA---- ---|------ AGUG-GCGC- 361 -A-AG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G C-CUUU---G -AGUU-U-GG 421 -GAU-AA-CC U--------- ------GA-- C(-GAAA-)G -UUAG-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------A-C CA-C--G-U- ---CUC-(-- --------AC 541 AA-------- -)-GAG---- AU-GC----G GU--AAAA-- ---GGAGU-- ---------- 601 --(------- ---CUCAA-- ---)------ ---------| --ACUC--C- A--CUC---- 661 ----AAAG-- AUG---A-|G UUCGC----- -GG|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AC----- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA A-AG--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GCGU- AUG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CAG---ACGU G-UAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUG A-AAC-UAUU C-GGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(GUU-GA)U ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACU-UG|--- ---------C ---UUGG--- GAC----CGC 1981 -CUU-G--(- GAAA-)-CAA -G-GUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| CCC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAA-GG-A A-CU-G-UCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAA A--GC-CGA- CU-GU-ACCA -GAA-G-UCA 3121 C-GAU-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-U A-CU-GC-CU A-AGGU-AUG GUU-GG-UG- AUC-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7-FLEXIB 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. ACCESSION No information KEYWORDS No information. SOURCE 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. ORGANISM 2.7 FLEXIBACTER-CYTOPHAGA-BACTEROIDES_PHYLUM. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1-SUBD 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1 SUBDIVISION_I. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1 SUBDIVISION_I. ORGANISM 2.7.1 SUBDIVISION_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1-BA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1 BACTEROIDES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1 BACTEROIDES_GROUP. ORGANISM 2.7.1.1 BACTEROIDES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. ORGANISM 2.7.1.1.1 ANAEROFLEXUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.putred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides putredinis str. 1 Ando ATCC 29800 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides putredinis str. 1 Ando ATCC 29800 (T). ORGANISM Bacteroides putredinis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29800 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16497 ATCC 29800 (T) = VPI 3293 biol_source= human feces isolate_name= 1 Ando NB: former name Bacteroides putredenis BASE COUNT 375 a 322 c 438 g 313 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~CNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C -A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAUGGA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UCUAU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---A -ACAG-G-GG 421 -GAU-AA-CA C--------- ------CG-- A(-GAAA-)U -UGGU-A--C UAAUACC-CC 481 AU-AAU---- ---------- -------A-U CA-U--A-GA ----AG-(-- --------GC 541 AU-------- -)-CUN---U UA-UG----G UU--GAAA-- ---AU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--U- G--GUU---- 661 ----AGAG-- AUG---G-|G CAUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----AA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CU(C-UN-U- -G)AG-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GA-GGG-- UA-AACG-CA --GAU-A--( -----CGUG- ---------) --UA-UC-UG 1081 ---------- -------U-C U-GA-AAGU- A-UCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNGUN-A) U-A-C-GGAG |-GAUU-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U UAG---AGGU G-AAA-UU-U CG-GGG-C(- UC-A)A-CCC -UG-A-ACG- 1321 -UGCC-UCUN A-UAC-UGUU G-AGCUA-GA GAG-----UA G-UU-GCGGU AGG-C|GGAA 1381 UG-UAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UC-AUACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCN-- ---------- ---------- ---------A 1501 ACU--AU-AU CUGACG-CUG AU-G------ -------CN- N-NAAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-CGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCGG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUNA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGCG--- -AC----GAU 1981 -UCU-U--(- GAAA-)-GAG -G-AUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---N(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CN-CU-C- U-GGC-GG-G A-CU-G-CCG --GU(-G--U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-A-GG -UA--CAGAG GGC-A-G-C- UA-CCC-A(G 2881 -CGA)UGGG- ---------- AU-GCGAA-U CUCG--AAAG -CC-U-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGAAAC-C- C)-GCCUCCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-GCCU -NAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rik.mifusu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rikenella microfusus. ACCESSION No information KEYWORDS No information. SOURCE Rikenella microfusus. ORGANISM Rikenella microfusus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16498 biol_source= quail cecum BASE COUNT 376 a 329 c 448 g 310 t 2913 others ORIGIN 1 .......... .......... .......... ..UACUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CCU-A C-CUUA---U -ACAG-G-AG 421 -GAU-AA-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--C UAAUACU-CC 481 AU-AGG---- ---------- ---------U AU-A--U-UU ---UCG-(-- --------GC 541 AU-------- -)-CGG---A GA-UA----U AU--GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CAUGC----- -GU|----GA C--AUUA-G- CUG-G---AU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A C-GAC--G-G CU(C-UA-U- -G)AG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GA-GAA-- UA-ACGG-UA --UCU-A--( -----CGUG- ---------) --UA-GG-UA 1081 ---------- -------A-U U-GA-AUGU- A-UCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUU-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 G-GU-AAG|U UAG---AGGU G-AAA-UU-C AG-CGG-C(- UU-A)A-CCG -CA-G-AAC- 1321 -UGCC-UCUG A-UAC-UGUC G-GGCUG-GA GAG-----UA G-AU-GCAGC AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUN-- ---------- ---------- ---------A 1501 UCU--AU-AU CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-CGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCGG-UGA 1741 CC--CA---- --GC-(GAA- ---A)G-CG- AUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- -------U-A ---GCGA--- -CC----GCC 1981 -UUU-G--(- AAAG-)-AGG -G-CUUC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| GCG-CGAAAC |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--CAU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AUG-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGNN- 2821 G-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AMY-A(G 2881 -CGA)URKU- ---------- AA-GCGAA-U CUCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GG-GU-GCCU -GAA-G-UAC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGC-AAA ACU-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1035 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1035. str. SBR1035. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1035. str. SBR1035. ORGANISM str. SBR1035. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84478|g871599 isolate_name= SBR1035 BASE COUNT 99 a 83 c 124 g 80 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGC-UU--A ACNC-NUGCN A-GUC-GAGG 121 G--GU----- -----AUU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AUUA---- ---|-----G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CGUU---A -ACCG-G-GG 421 -GAU-AG-CC C--------- ------GU-- C(-GAAA-)G -GCGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UG-G--G-AU ---UCU-(-- --------GC 541 AU-------- -)-GGG---A UU-UC----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AACG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G NC(C-UA-U- -G)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2008 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2008. str. SBR2008. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2008. str. SBR2008. ORGANISM str. SBR2008. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84553|g871674 isolate_name= SBR2008 BASE COUNT 100 a 85 c 124 g 80 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGC-UU--A ACNC-AUGCA A-GUC-GAGG 121 G--GU----- -----AUU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NUUA---- ---|-----G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CGUU---A -ACCG-G-GG 421 -GAU-AG-CC C--------- ------GU-- C(-GAAA-)G -GCGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UG-G--G-AU ---UCU-(-- --------GC 541 AU-------- -)-GGG---A UU-UC----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AACG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G NC(C-UA-U- -G)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anf.mariti 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Anaeroflexus maritimus" str. PL12FS DSM 2831. ACCESSION No information KEYWORDS No information. SOURCE "Anaeroflexus maritimus" str. PL12FS DSM 2831. ORGANISM "Anaeroflexus maritimus". REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2831 isolate_name= PL12FS BASE COUNT 358 a 314 c 411 g 303 t 2990 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~NNNG AUUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------U-U CC-G--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U UA-UG----G AU--UAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CAUGC----- -GU|----GG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-NGA ACCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-CU-GC 1021 --AA-GAA-- GA-AUGG-UC --ACU-A--( -----CGUG- ---------) --UA-GU-GA 1081 ---------- -------U-U U-GA-CGGU- A-UUG-C-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UG-C UG-CAG-C(- UC-A)A-CUG -UA-G-AAC- 1321 -UGCC-AUUG A-AAC-UGUA U-AGCUU-GA GUG-----CG C-GU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 AGC--GU-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUCAG-CGG 1741 CU--UA---- --GC-(GAA- ---A)G-CA- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UUA AAU-GU|--- -------A-G ---AAUG--- -AC----CGU 1981 -UGC-C--(- GAAA-)-GGU -G-ACCU--- A--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 .....(.... ...)...... .......... .........C AACCC-UU-A |-UC--G... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ........UC -A-AAUC-AG NNN-N-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-C-GG -UA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCUAA-U CCCA--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GRCUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GU-UGG- GG-GU-ACCU -GAA-G-UCU 3121 G-C------- -AA-CC---- ---------- ---------- -----(---- -GYAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACC-AA-UG- ACU-GG.... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD30 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26217|g498419 library_source= unidentified soil bacterium from paddy field BASE COUNT 70 a 68 c 80 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-GA-A A-CU-G-CCG --GU(-G--U AA)-ACC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCUAA-U CUCG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.xylanol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga xylanolytica str. XM3. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga xylanolytica str. XM3. ORGANISM Cytophaga xylanolytica. REFERENCE 1 AUTHORS Haack,S.K. and Breznak,J.A. TITLE Cytophage Xylanolytica sp. nov., a polysaccharide-degrading, anaerobic, gliding bacterium JOURNAL Arch. Microbiol. 159, 6-15 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80587 isolate_name= XM3 BASE COUNT 224 a 185 c 273 g 199 t 3495 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... UAGGUU---- 661 ----GUAG-- AUG---G-|G NAUGC----- -GU|----GN C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-NNC-GG) -C-UUNCN-N A|-GGC-AA- CGA------- -----UG-UN 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAGAU- GG--C-(GAG A)-GCC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--G-G -C(C-UA-C- -G)GG-UUGU AAA--CUNN| NUUU-GU-AC 1021 --GG-GAA-- GA-AAAA-AC --GCC-A--( -----CGUG- ---------) --UG-GU-GU 1081 ---------- -------C-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A -C.......( .......... .........) .......... |......... 1201 ........AU -C-GGANUUA -NU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GN-NN- 1261 N-UU-AAG|U CAG---UGGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UG-A-AAU- 1321 -UGCN-AUUG A-UNC-UGGU U-UUCUU-GA GUA-----CA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGGUGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UA-CCACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUN-- ---------- ---------- ---------A 1501 AGU--GU-AA CUGACG-CUG AU-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--CN-CU-- -------C|G -UU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)U ---------- ---------- ---------- ---------U -GCAAG-UGA 1741 CC--AA---- --GA-(GAA- ---A)U-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G -------CUC .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(...A -GU)-CCNNN NA-------- CGAG-C--GC AACCC-NN-N |-UC--GUU- 2281 AG--UUGC-C AU-NAG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-ANN-GA-G A-CU-G-CNG --GU(-GN-U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUN-CA GCN-N-GG-C NNUGC-G-AU -NA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-CCA-U(G 2881 -CGA)AUGG- ---------- AU-GCUAA-U CCUA--AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.ferment 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga fermentans. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga fermentans. ORGANISM Cytophaga fermentans. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58766 ATCC 19072 (T) = NCIMB 2218 BASE COUNT 397 a 317 c 418 g 331 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUU UAUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- AAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-GGU---- ---------- -------U-A UA-Y--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A AA-UU----A UA--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-GUCAAU-- GG-CC-(GCA A)-GGC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GG-GAA-- GA-AACG-UA --UCU-A--( -----CGAG- ---------) --UA-GA-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-CU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----UA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCU--AU-AA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-GU-UGG -CA------- ---------- 1681 -(AUA-CA)U ---------- ---------- ---------- ---------G -GUCAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-G---(G CAA)---C-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UUA AAU-GU|--- -------A-G ---GCUG--- -CA----UAG 1981 -AGU-A--(- GAGA-)-UAU -U-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-CU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- AU-GCUAA-U CCCU--AAAC -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GC-CGA- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.fermen2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga fermentans. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga fermentans. ORGANISM Cytophaga fermentans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE 16S rRNA sequencing and menaquinone analysis Phylogenetic diversity of the genus Cytophaga revealed by JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12661|g425720 NCIMB 2218 = ATCC 19072 (T) BASE COUNT 331 a 260 c 349 g 293 t 3143 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- AAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-GGU---- ---------- -------U-A UA-C--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---N AA-UU----A UA--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-CC-(GCA A)-GGC-UGA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-UC 1021 --GG-GAA-- GA-AACG-UA --UCU-U--( -----CGAG- ---------) --UA-GA-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGNN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-CU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U UG-CGN-C(- UC-A)A-CCG -UA-A-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----UA G-UU-GAGGU AGG-C|GGAA 1381 UG-UGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCU--AU-AA UUGACG-CUG AU-G------ -------CA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-GU-UGG -CA------- ---------- 1681 -(A-N-CA)U ---------- ---------- ---------- ---------G -GUCAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|N-CCU- G-GGGAGUAC 1801 GUU-G---(G CAA)---C-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AU CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UUA AAU-GU|--- -------A-G ---GCUG--- -CA----UAG 1981 -AGU-A--(- GAGA-)-UAU -U-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-CU-UAC |---A|A--G 2161 GU-GC-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GN-CN-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- AU-GCUNA-U CCCU--NAAC -CC-N-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.agarov2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia agarovorans. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia agarovorans. ORGANISM Marinilabilia agarovorans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12654|g425714 Former RDP Sids: Cy.agarov2 NCIMB 2217 (T) = DSM 2097 = ATCC 19043 NB: former name Cytophaga salmonicolor subsp. agarovorans BASE COUNT 318 a 264 c 342 g 299 t 3153 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -GC-GUAUG- CAN--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUUCU-CC 481 AU-UGU---- ---------- -------A-C UC-N--N-AG ---UUC-(-- --------NC 541 AU-------- -)-GGA---U UA-AG----A NU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-N-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GNNC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---UU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNC CNCNGUN-A) U-A-C-GGAG |-UAUG-C-- 1201 UAG-CGUUAU CC-GGAUUUN -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUU-----CA G-AU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CN- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUUC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUU-CU)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|U-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-ANC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUU AAU-GG|--- -------G-N ---AGUG--- -AU----UGG 1981 -GGN-A--(- GAAA-)-UNC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUC-UU-UUC |---A|A--G 2161 GU-NC-UACA UG|G-UUG-- UCG-UCU|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CNA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AUC-AA-G A-CU-G-CCG --GU(-G--C AN)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CUA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-U-NUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCANC-C- C)-GACUUCA -UGAAGC-UG -GNAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.salmoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia salmonicolor. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia salmonicolor. ORGANISM Marinilabilia salmonicolor. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12672|g425731 Former RDP Sids: Cy.sal2216 NCIMB 2216 (T) = DSM 6480 = ATCC 19041 NB: former name Cytophaga salmonicolor BASE COUNT 336 a 267 c 348 g 280 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUGCU-CC 481 AU-UGU---- ---------- -------A-C UC-U--A-AG ---UUC-(-- --------GC 541 AU-------- -)-GGA---U UA-AG----A GU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-N-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GNCC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---UU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UNA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-NC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUA-----CA G-AU-GANGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUN-CN)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|N-CCU- G-GGGAGUAC 1801 GNC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AGUG--- -AN----NGG 1981 -GGU-A--(- GAAA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UAC |---A|A--G 2161 GU-GC-UACA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGC-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CAN---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-CCU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-N-NUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ml.agarovo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinilabilia agarovorans. ACCESSION No information KEYWORDS No information. SOURCE Marinilabilia agarovorans. ORGANISM Marinilabilia agarovorans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62422 Former RDP Sids: Cy.salmaga Cy.agarovo ATCC 19043 = DSM 2097 = NCIMB 2217 (T) NB: former name Cytophaga salmonicolor subsp. agarovorans -> Cytophaga agarovorans BASE COUNT 398 a 324 c 413 g 319 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUU CCUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-U C-CUUU---A -ACAG-G-AG 421 -AAU-AG-CC C--------- ------CC-- G(-GAAA-)C -GGGN-A--U UAAUGCU-CC 481 AU-NGU---- ---------- -------A-C UC-U--A-AG ---UCC-(-- --------GC 541 AU-------- -)-GGA---U UA-AG----A GU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----A--C- G--GUU---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGUC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-GAA-- GA-AAUA-UA --GCU-A--( -----CGAG- ---------) --UA-GU-UA 1081 ---------- -------U-U U-GC-CGGU- A-CCG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-NA-AU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -UA-G-UUG- 1321 -UGCC-AUUG A-UAC-UGUC A-UUCUU-GA GUA-----CA G-AU-GAGGU AGG-C|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--GA-CA CUGACG-CUG AA-G------ -------CA- C-NAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -UU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GCAAG-CGA 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AGUG--- -AC----AGG 1981 -GGU-A--(- GAAA-)-UAC -C-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-A-GG -UA--CAAAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCG--AAAA -CC-U-GUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCNC- GNC-AAG--- --CCA-UGGA A--GC-CGG- GA-GU-ACCU -GAA-G-UAU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.splanc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides splanchnicus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides splanchnicus. ORGANISM Bacteroides splanchnicus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16496 NCTC 10825 (T) = ATCC 29572 biol_source= abdominal abscess, feces BASE COUNT 383 a 314 c 429 g 332 t 2918 others ORIGIN 1 .......... .......... .......... ..UNCUAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-A--U CA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGA---U -ACCG-G-GG 421 -UAU-AG-CC C--------- ------AU-- G(-GAAA-)C -GUGG-A--U UAACACC-CC 481 AU-AGU---- ---------- -------A-C UU-U--U-AU ---CCU-(-- --------GC 541 AU-------- -)-GGG---A UG-GG----A GU--UAAA-- ---UG----- ---------- 601 --(------- ---UUYA--- ---)------ ---------| --------A- G--GUA---- 661 ----UCGG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-AG) -C-CCACC-A A|-GAC-GA- UGA------- -----UA-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-A A-GAC--U-G CC(C-UN-U- -G)GG-UUGU AAA--CCNC| UUUU-AU-AA 1021 --GG-GAA-- GA-AUAA-GU --UCU-A--( -----CGUG- ---------) --UA-GA-AU 1081 ---------- -------G-A U-GC-CUGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U UAG---UGGU U-AAA-UA-U UU-GAG-C(- UC-A)A-CUC --A-A-UUG- 1321 -UGCC-AUUA A-UAC-UGGU A-AACUG-GA GUA-----CA G-GC-GAGGU AGG-C|GGAA 1381 UA-AGUUAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCA-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AU-G------ -------CA- C-GAGA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--CA-CU-- -------N|G -UU-CU-SUG -CG------- ---------- 1681 -(AUA-UA)U ---------- ---------- ---------- ---------U -GUACG-GGA 1741 UU--AA---- --GC-(GAA- ---A)G-UA- UUAA-GUGAG C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUA AAU-GG|--- -------G-A ---AAUG--- -CC----GUA 1981 -UUU-G--(- GAAA-)-CAG -A-UAUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G---| CGU-UU-UUC |---R|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-UU-A |-CC--GUU- 2281 AG--UUGC-U AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|A 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCA --CC(-G--U AA)-GGU-GA -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-C-G-C- UA-CCA-G(G 2881 -UGA)CUGG- ---------- AU-GCCAA-U CUCA--AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGUAAC-C- C)-GACUCCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. ORGANISM 2.7.1.1.2 BAC.DISTASONIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.gingiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas gingivalis. ORGANISM Porphyromonas gingivalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16492 ATCC 33277 (T) = DSM 20709 biol_source= human gingival sulcus BASE COUNT 377 a 334 c 443 g 313 t 2909 others ORIGIN 1 .......... .......... .......... ...ACAGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUUA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UNAAACC-GC 481 AU-ACA---- ---------- -------C-U UG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A UU-AC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----UAAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--A-G UC(C-UA-A- -G)GA-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-ACGG-GC --GAU-A--( -----CGAG- ---------) --UA-UU-GC 1081 ---------- -------A-U U-GA-AUGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UC- 1261 G-GU-AAG|U CAG---CGGU G-AAA-CC-U GA-GCG-C(- UC-A)A-CGU -UC-A-GCC- 1321 -UGCC-GUUG A-AAC-UGCC N-GGCUU-GA GUU-----CA G-CG-GCGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------U 1501 ACU--GC-GA CUGACA-CUG AA-G------ -------CA- C-GAAG-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)C ---------- ---------- ---------- --------GU -CAAGC-UUC 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----UGA 1981 -UGG-U--(- GAAA-)-ACC -G-UC-U--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GGU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---U(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCU--AAAC -CC-U-UCC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-GGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-CA-CU A-GGGU-AAU ACC-GG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.gingi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas gingivalis. ORGANISM Porphyromonas gingivalis. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73964|g509140 DSM 20709 = ATCC 33277 (T) biol_source= human gingival sulcus BASE COUNT 372 a 332 c 441 g 307 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGGU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUUA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAAACC-GC 481 AU-ACA---- ---------- -------C-U UG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A UU-AC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----UAAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--A-G UC(C-UA-A- -G)GA-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-ACGG-GC --GAU-A--( -----CGAG- ---------) --UA-UU-GC 1081 ---------- -------A-U U-GA-AUGU- A-CCG-U-AA G-AA--UARG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UC- 1261 G-GU-AAG|U CAG---CGGU G-AAA-CC-U GA-GCG-C(- UC-A)A-CGU -UC-A-GCC- 1321 -UGCC-GUUG A-AAC-UGCC G-GGCUU-GA CUU-----CA G-UG-GCGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------U 1501 ACU--GC-GA CUGACA-CUG AA-G------ -------CA- C-GAAG-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)C ---------- ---------- ---------- --------GU -CAAGC-UUC 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----GGA 1981 -UGG-U--(- GAAA-)-ACC -G-UCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GGU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---U(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCU--AAAC -CC-U-UCC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-GGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ --CG-CA-CU A-GGGU-AAU ACC-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cansul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas cansulci. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas cansulci. ORGANISM Porphyromonas cansulci. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76260|g577601 BASE COUNT 387 a 329 c 444 g 321 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUUCA A-GUC-GAGG 121 G--GC-AU-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUGU---C -AGAC-U-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -CCGG-A--C UAAUACU-GG 481 AU-ACA---- ---------- -------C-U UA-U--U-CU ---UCU-(-- --------GC 541 AU-------- -)-GGG---G GG-AU----A AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- A--CUG---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 AGG-AAUCUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-C A-GAC--G-G UC(C-UA-A- -G)GA-UUGU AAA--CCUC| UUUU-UC-AG 1021 --GG-GAG-- UA-AAAU-UA --GAU-A--( -----CGCG- ---------) --UA-UU-UA 1081 ---------- -------A-U U-GC-AAGU- A-CCC-U-GC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GU-UU- 1261 U-GU-AAG|U CAG---UGGU G-AAA-CC-U GG-GGG-C(- UC-A)A-CCC -CU-A-GCA- 1321 -UGCC-GUUG A-AAC-UGCA G-AGCUA-GA GAU-----UA G-AA-UAGGU AGG-C|GGAA 1381 UG-UAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-AUACAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCG-- ---------- ---------- ---------G 1501 GCU--AU-AU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GA-GU-AUG -CG-A----- ---------- 1681 -(UAU-GA)G ---------- ---------- ---------- --------UG -UAUGC-UUC 1741 UU---A---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UA|--- -------U-A ---GAUG--- -AC----AGG 1981 -CAG-C--(- GAGA-)-GUU -G-UUAU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCCU AA-------- CGAG-C--GC AACCC-AC-A |-UU--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-AA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GN-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UC-CU A-GGGU-AAU ACC-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.salvos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas salivosa. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas salivosa. ORGANISM Porphyromonas salivosa. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26103 BASE COUNT 379 a 309 c 437 g 318 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUN-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CUU-G C-CUGG---U -AGAA-A-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UNAUACC-UU 481 AU-GGU---- ---------- -------C-U UG-G--G-UN ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AU-UC----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA CGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AG 1021 --GG-GAU-- NA-AAGU-UA --UNC-A--( -----CGNN- ---------) --NN-NA-NN 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-CG- 1261 G-AU-AAG|U CGG---GGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -CA-G-NCU- 1321 -UGCC-UUCG A-AAC-UGUU U-GGCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-NA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-CUC 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|N-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GCGG--- -AC----UAU 1981 -GUA-U--(- GAAA-)-GUA -C-AUNU--- C--------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------CNC A-)------- AG-------- -----G---| CCG-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-G |-UU--GUC- 2281 AG--UUAC-U AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCG --UC(-G--N AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUAUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GA-GU-ACCU -AAA-G-CAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UG-UU A-GGGU-AAU ACC-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.macaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas macacae. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas macacae. ORGANISM Porphyromonas macacae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16494 Former RDP Sids: Bac.macaca ATCC 33141 (T) = DSM 20710 biol_source= macaque periodontal pocket NB: former name Bacteroides macacae BASE COUNT 383 a 312 c 437 g 331 t 2913 others ORIGIN 1 .......... .......... .......... ...ACAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CUU-G C-CUGA---U -AGAA-A-GG 421 -GAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UNAUACC-UU 481 AU-GGU---- ---------- -------C-U UG-G--G-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AU-UC----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA CGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AG 1021 --GG-GGA-- UN-AAGU-UA --UCC-A--( -----CGUG- ---------) --UG-GA-UN 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-CU- 1261 G-AU-AAG|U CGG---GGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -CA-G-UCU- 1321 -UGCC-UUCG A-AAC-UGUU U-GGCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-CUC 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GCGG--- -AC----UAU 1981 -GUA-U--(- GAAA-)-GUA -C-AUAU--- C--------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------CAC A-)------- AG-------- -----G---| CCG-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-G |-UU--GUC- 2281 AG--UUAC-U AU-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- N)-GACUAUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGG A--GU-CGG- GA-GU-ACCU -AAA-G-CAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-UG-UC A-GGGU-AAU ACC-GG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.asacch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas asaccharolytica. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas asaccharolytica. ORGANISM Porphyromonas asaccharolytica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16490 biol_source= empyema BASE COUNT 398 a 320 c 439 g 313 t 2906 others ORIGIN 1 .......... .......... .......... .UAACAAUGG AGAGUU(U-G A)C-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAYG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUAUG- CAA--CUU-A C-CUCU---U -AGUG-G-UG 421 -AAU-AA-CC C--------- ------GA-- U(-GAAA-)G -UCGG-A--C UAAUACA-CC 481 AU-AUA---- ---------- -------C-U CC-U--U-AG ---AUC-(-- --------CC 541 AU-------- -)-GAG---A AG-AG----G AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUG---G-|G CCUGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -AUUGA-C-A 841 (CUGA-GA-U ACG)--GGUC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--U-G CC(C-GC-AA -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --GG-GAU-- UA-AAGU-CA --CCU-A--( -----CGUG- ---------) --UA-GG-UN 1081 ---------- -------U-U U-GC-AGUU- A-CCA-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GC-AA- 1261 G-GG-AAG|U CAG---GGGU G-AAA-AG-C UG-UAG-C(- UC-A)A-CUA -UG-G-UCU- 1321 -UGCC-UUUG A-AAC-UCUC U-AGCUA-GA GUG-----UA C-UG-GAGGU ACG-U|GGAA 1381 CG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACU-CCGA- 1441 -U-U-GC(-G CA-G)GCAG- -CGUACUA-- ---------- ---------- ---------C 1501 AUU--AC-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-CAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-CU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAUG-GGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-NAAACUC -AAA-GAGAU UG-GCGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -CA----UGA 1981 -GGC-U--(- GAGA-)-GGU -C-UN-U--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NNU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-GU -GAGG-A-AG 2761 G-AG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAGCG AGC-A-G-C- CA-UCU-G(G 2881 -UGA)CAGA- ---------- GA-GCUAA-U CUAU--AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-AGC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GUCACA--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CU-UG A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cirden 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas circumdentaria. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas circumdentaria. ORGANISM Porphyromonas circumdentaria. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26102 biol_source= feline gingiva BASE COUNT 394 a 299 c 435 g 327 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AAUGG AGAGUU(U-G A)C-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -NGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- UAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -GAU-AG-CU C--------- ------GG-- U(-GAAA-)G -UCGA-A--U UAAUACC-CU 481 AU-AUU---- ---------- -------C-U AU-A--U-AU ---UUC-(-- --------GC 541 AU-------- -)-GGG---A UU-UA----U AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GA 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--U-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UA-AUGG-UA --GCC-N--( -----CGUG- ---------) --UG-GC-UN 1081 ---------- -------A-G GGGA-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GA- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UN-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGGU U-UGCUU-GA GAG-----GA G-AC-GAGGU AUG-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACCA-- ---------- ---------- ---------G 1501 GCU--CU-AU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GA-UUG AAA-UU|--- -------U-A ---GGAG--- AAC----GAU 1981 -UUA-U--(- GAAA-)-GUA -G-ANNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUC-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UU--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---A(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAN-GC -GAGG-A-AG 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-AG -GA--CAAAG GGA-A-G-C- CA-CAU-A(G 2881 -CGA)UAUG- ---------- GA-GCAGA-U CCUC--AAAC -CU-N-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CNN-UGGG A--GU-CGG- GG-GU-ACCU -GAA-G-AGU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CU-UA A-GGGU-AAU ACC-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.endodo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas endodontalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas endodontalis. ORGANISM Porphyromonas endodontalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16491 biol_source= infected root canal BASE COUNT 397 a 317 c 437 g 316 t 2909 others ORIGIN 1 .......... .......... .......... .UAACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -AAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UAAUACC-CU 481 AU-AUU---- ---------- -------C-U UC-U--U-UC ---UCC-(-- --------GC 541 AU-------- -)-GGA---G GA-GG----A CG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A C-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UA-AUGG-CA --GCU-A--( -----CGUG- ---------) --UA-GC-UN 1081 ---------- -------A-G AUGC-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UC-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UNAU A-UGCUA-GA GGA-----GA C-CG-AAGGU AUG-C|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACUA-- ---------- ---------- ---------G 1501 GCU--CC-GU CUGACA-CUG AA-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GAUG--- -AU----GGC 1981 -AGA-U--(- GAGA-)-GUU -U-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-GC -GAGG-A-AG 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-NC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGA-A-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- AA-GCGGA-U CUCC--AAAC -CC-N-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GA-GU-ACCU -GAA-G-AGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-AG-CU-UA A-GGGU-AAU ACC-AG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_23 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.23. str. PUS3.23. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.23. str. PUS3.23. ORGANISM str. PUS3.23. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43697|g1172141 isolate_name= PUS3.23 BASE COUNT 388 a 313 c 442 g 308 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UAUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-G C-CUGU---A -AUUA-G-GG 421 -AAU-AA-CC C--------- ------GG-- U(-GAAA-)G -UCGG-A--C UAAUACC-CU 481 AU-AUU---- ---------- -------C-U UC-U--U-UC ---UCC-(-- --------GC 541 AU-------- -)-GGG---G GA-GG----A CG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U---- G--AUU---- 661 ----ACAG-- AUG---G-|G CAUGC----- -GU|----CC C--AAUA-G- CUG-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A C-GAC--G-G UU(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --AG-GAA-- UAACGGG-CA --CGU-A--( -----CGCG- ---------) --UA-GC-UG 1081 ---------- -------A-G AUGC-AUGU- A-CUC-U-AC G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-GU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-CAG-C(- UC-A)A-CUG -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGAU A-UGCUA-GA GAG-----GA G-AC-GAGGU AUG-C|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACG-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACCA-- ---------- ---------- ---------G 1501 GCU--CC-GU CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-UU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-AGU 1741 CU--AA---- --GC-(GAA- ---A)G-CG- -UAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 C-A--CA-AG GCGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UU|--- -------U-A ---GAUG--- -AC----GGC 1981 -AGA-U--(- GAGA-)-GUU -U-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-AAG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-GC-G |-UC--GAU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUC-GA-G A-CA-G-CCG --UC(-G--U AA)-GAC-CG -AAGG-A-A- 2761 G-GG-CGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGA-A-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- AA-GCGGA-U CUCC--AAAC -CC-U-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GA-GU-ACCU -GAA-GGAGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CG-CU-UA A-GGGU-AAU ACC-AG-UG- ACU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.canors 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas canoris. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas canoris. ORGANISM Porphyromonas canoris. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76261|g577602 NB: paper does not list this accession no. BASE COUNT 396 a 319 c 436 g 333 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UACC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUAUUC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GAAUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-NCGG- 361 -A-UG-GG-U NCGU---AAC -GC-GUAUG- CAA--CUU-A C-CUGU---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U UG-A--G-AU ---GCU-(-- --------GC 541 AU-------- -)-GGU---G UU-UC----A AG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUG---- 661 ----ACAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GUC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----AA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AUUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GG-GAU-- UA-AAGU-UU --GCC-U--( -----UGCG- ---------) --AG-GC-AA 1081 ---------- -------U-U U-GC-AAGU- A-CCC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UUUGGGU|U UAAA-GGGU- GCG-UAG-GU -U|-GC-UU- 1261 U--U-AAG|U CAG---UGGU G-AAA-G--C UG-UGG-C(U CC-A)A-CCA -UA-N-UCUU 1321 CCCUU-GUUG A-AAC-UGAG G-AGCUU-GA GUG-----UA G-AU-GCUGU AGG-C|GGAA 1381 CG-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACAA-- ---------- ---------- ---------A 1501 GUU--AC-AA CUGACA-CUG AA-G------ -------CA- C-GAGA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|A -GA-GU-AUG -CG-A----- ---------- 1681 -(UAU-AA)U ---------- ---------- ---------- ---------- -GUAUG-UUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-G ---CAUG--- -AC----GUA 1981 -AAU-U--(G GAGAC)-GAU -U-UAUA--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-GU-AUA |UG-U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UU--GUC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GU -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-AG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- GU-GCGAA-U CUCC--AAAC -CU-C-AUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GA-GU-ACCU -GAA-G-UAC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UA-CU A-GGGU-AAU ACC-GG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.levii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas levii. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas levii. ORGANISM Porphyromonas levii. REFERENCE 1 AUTHORS Shah,H.N., Collins,M.D., Olsen,I., Paster,B.J. and Dewhirst,F .E. TITLE Reclassification of Bacteroides levii (Holdeman, Cato, and Moore) in the genus Porphyromonas, as Porphyromonas levii comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 586-588 (1995) STANDARD No information REFERENCE 2 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16493 Former RDP Sids: Bac.levii biol_source= bovine rumen NB: former name Bacteroides levii BASE COUNT 397 a 305 c 427 g 332 t 2915 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAU-A -GGC-UN--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CUU-G C-CUCU---U -AGUG-G-GG 421 -AAU-AA-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--C UAAUACC-GC 481 AU-ACA---- ---------- -------C-U UA-G--U-UA ---UCC-(-- --------GC 541 AU-------- -)-GGA---U GA-UU----A AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----AGAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UG-GA 781 U-AG-G-GG| -A-GCU--(G -AGA)-GGCU ----UA-U-- CCC-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GC-GAG-- UA-AACG-UA --GGU-A--( -----CGAG- ---------) --UA-CC-UA 1081 ---------- -------C-C U-GC-AAGU- A-GCC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-AG- 1261 A-UU-AAG|U CAG---UGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UNGU U-UGCUU-GA GUA-----CA G-UU-GAUGU AGG-C|GGAA 1381 UG-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACAA-- ---------- ---------- ---------A 1501 AGU--GU-AA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-U-AUGA U--UA-CU-- -------C|A -GA-GU-AUG -CG------- ---------- 1681 -(AUA-UA)A ---------- ---------- ---------- ---------U -GUAUG-CUC 1741 UC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUNAUA-C G)--CGAGNN 1921 A-CCUUA-CC UGG-GA-UUG AAA-UG|--- -------U-A ---UAGG--- ACA----GGG 1981 -GAU-G--(- GAAA-)-CAU -U-CNNNU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CUU-AU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UN-A |-UC--GUU- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --UC(-G--U AA)-GAC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-AG -GA--CAAAG GGU-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCCAA-U CUCC--AAAC -CU-N-AUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-UGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CG A-GGGU-AAG ACC-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.cangin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas cangingivalis. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas cangingivalis. ORGANISM Porphyromonas cangingivalis. REFERENCE 1 AUTHORS Collins,M.D., Love,D.N., Karjalainen,J., Kanervo,A., Forsblom,B., Willems,A., Stubbs,S., Sarkiala,E., Bailey,G.D., Wigney,D.I. and Jousimies-Somer,H. TITLE Phylogenetic analysis of members of the genus Porphyromonas and description of Porphyromonas cangingivalis sp. nov. and Porphyromonas cansulci sp. nov JOURNAL Int. J. Syst. Bacteriol. 44, 674-679 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76259|g577600 BASE COUNT 391 a 330 c 453 g 309 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-GCGU- 361 -A-AG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUGU---C -AGUG-G-GG 421 -AAU-AA-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--C UAAUACC-GC 481 AU-ACA---- ---------- -------C-U UU-G--G-UU ---UCC-(-- --------GC 541 AU-------- -)-GGG---G AC-UU----U AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUG---- 661 ----ACAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -A-GCU--(G -AGA)-GGCU ----UA-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUA-GU-AG 1021 --GU-GAG-- UA-CAAG-CA --GUU-A--( -----CGUG- ---------) --UA-GC-UG 1081 ---------- -------U-A A-GC-AAGU- A-ACC-U-AA G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GC-UU- 1261 C-AU-AAG|U CAG---UGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-GUUG A-AAC-UGUG G-AGCUU-GA GUG-----CG G-AU-GAGGU AGG-C|GGAA 1381 CG-CGUAGU- GUA-GCG(-N UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACCA-- ---------- ---------- ---------A 1501 ACC--GC-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GA-GU-AUG -CG------- ---------- 1681 -(AUA-UA)U ---------- ---------- ---------- ---------G -GUAUG-CUC 1741 CC--AA---- --GG-(GAA- ---A)C-CG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---CAUG--- -AC----GGU 1981 -UGG-G--(C GAGAG)-CCU -G-ACU---- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-GU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UC--GUC- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-A-GG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-U-AUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-CA-CG A-GGGU-AAG ACC-GG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppm.catoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyromonas catoniae. ACCESSION No information KEYWORDS No information. SOURCE Porphyromonas catoniae. ORGANISM Porphyromonas catoniae. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Reclassification of Oribaculum catoniae (Moore and Moore 1994) as Porphyromonas catoniae comb. nov. and emendation of the genus Porphyromonas JOURNAL Int. J. Syst. Bacteriol. 45, 578-581 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82823|g929751 BASE COUNT 375 a 331 c 445 g 306 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GANC-GC-- UANC-GAU-A -GNC-UU--A ACAC-AUNCA A-GUC-GAGG 121 G--GC-AN-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-NC--G ACCG-GCGN- 361 -A-CG-GG-U GCGU---NAC -GC-GUAUG- CAA--CUU-G C-CUCA---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -ACGG-A--C UAAUACC-GC 481 GU-ACA---- ---------- -------C-U CC-A--G-NC ---UGG-(-- --------GC 541 AU-------- -)-CCA---G GC-UA----G AG--GAAA-- ---UG----- ---------- 601 --(------- ---AAAU--- ---)------ ---------| -----U--C- G--CUG---- 661 ----UGAG-- AUA---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GNC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G UC(U-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AG 1021 --GG-GAA-- UA-AAGA-AU --AGU-A--( -----CGUG- ---------) --UA-CC-AU 1081 ---------- -------A-G U-GA-AUGU- A-CCC-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---CGGU G-AAA-UC-U AG-GGG-C(- UU-A)A-CUC -CU-A-AAU- 1321 -UGCC-AUUG A-UAC-UGGU G-GGCUU-GA GUG-----UA G-AU-GAGGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UC-ACGCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AC-AA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------G|G -GC-GU-AUG -CG-A----- ---------- 1681 -(UAU-AC)A ---------- ---------- ---------- ---------- -GUAUG-CUC 1741 CU--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GAUG--- -AC----CAC 1981 -CGG-U--(- GAAA-)-GUC -G-NNUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-G |-UC--UAC- 2281 GG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- C-GUA-GA-G A-CU-G-CCG --UC(-G--U AA)-GGC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCGAA-U CUCC--AAAC -CC-C-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-CUG- GA-GU-ACCU -AAA-G-UCC 3121 G-U------- -AC-CU---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGU-AAU ACA-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fsyth2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides forsythus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides forsythus. ORGANISM Bacteroides forsythus. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73962|g508109 legacy_attribute= pure culture cells BASE COUNT 373 a 316 c 449 g 312 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- UAA--CCU-G C-CCGC---A -ACAG-A-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-UC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---UCC-(-- --------GC 541 AU-------- -)-GGGG--C UA-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GCGG-- AUG---G-|G CAUGC----- -GU|----AC C--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AU- CGA------- -----UG-GU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGG-AA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AC-AG 1021 --GG-GAA-- UA-AAAU-GA --GAU-A--( -----CGUG- ---------) --UA-UU-UU 1081 ---------- -------A-U U-GC-AUGU- A-CCU-U-GU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GG-CU- 1261 G-UU-AAG|U CCG---CGGU G-AAA-GU-U UG-UCG-C(- UU-A)A-CGA -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGU A-GUCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AU-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-CUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GACG--- -AC----GGA 1981 -GAG-U--(- GAGA-)-GCU -U-UCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UG-A |-CU--GUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-G A-CU-G-CCG --GC(-G--U AA)-GCU-GU -GAGG-A-AG 2761 G-UU-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCCAA-U CUCC--AAAC -CC-U-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-A------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fsyths 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides forsythus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides forsythus. ORGANISM Bacteroides forsythus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16495 biol_source= human periodontal pocket BASE COUNT 372 a 315 c 452 g 316 t 2921 others ORIGIN 1 .......... .......... .......... .NAACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAU-A -GGC-UU--A NCAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- UAA--CCU-G C-CCGC---A -ACAG-A-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-UC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---UCC-(-- --------GC 541 AU-------- -)-GGGG--C NN-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GCGG-- AUG---G-|G UAUGC----- -GU|----AC C--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACU-A A|-GCC-AU- CGA------- -----UG-GU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AC-AG 1021 --GG-GAA-- UA-AAAU-GA --GAU-A--( -----CGUG- ---------) --UA-UU-UU 1081 ---------- -------A-U U-GC-AUGU- A-CCU-U-GU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GG-CU- 1261 G-UU-AAG|U CCG---CGGU G-AAA-GU-U UG-UCG-C(- UU-A)A-CGA -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGU A-GUCUU-GA GUA-----UA G-RU-GAAGU AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACGCAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GGU--AU-AA CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GA-GU-UUG -CG------- ---------- 1681 -(AUA-UA)G ---------- ---------- ---------- ---------U -GUAAG-CUC 1741 UA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GA-UUG AAA-UG|--- -------U-A ---GACG--- -AC----GGA 1981 -GAG-U--(- GAGA-)-GCU -U-UCUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NGU-CU-AUG |---U|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-N(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UG-A |-CU--GUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-NGC-GG-G A-CU-G-CCG --GC(-G--U AA)-GCU-GU -GAGG-A-AG 2761 G-UU-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-N-NC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-A-GG -GA--CAAAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CCGG- ---------- AU-GCCAA-U CUCC--AAAC -CC-U-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN71 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN71.. ACCESSION No information KEYWORDS No information. SOURCE clone UN71. ORGANISM clone UN71. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63629 BASE COUNT 90 a 63 c 96 g 78 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCC-GUUG A-AAC-UGGG C-GACUU-GA GAG-----UG A-AC-GAGGU AGG-C|GGAA 1381 UU-UAUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-AUAAAG- AACU-CCGA- 1441 -U-A-GC(-G CA-G)GCAG- -CUUACCA-- ---------- ---------- ---------G 1501 GCC--AC-AU CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GCAAG-CGG 1741 CU--UA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN78 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN78.. ACCESSION No information KEYWORDS No information. SOURCE clone UN78. ORGANISM clone UN78. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63632 BASE COUNT 94 a 62 c 98 g 73 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U CAG---CGGU G-AAA-UC-C UG-GAG-C(- UU-A)A-CUC -CG-G-AAC- 1321 -UGCC-GUUG A-AAC-UGUC G-GACUU-GA GAG-----UG A-AC-GAGGC AGG-C|GGAA 1381 UU-CGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGAAG- AACC-CCGA- 1441 -U-A-GC(-G CA-G)GCAG- -CUUGCCA-- ---------- ---------- ---------G 1501 GCC--AC-GA CUGACA-CUG AA-G------ -------CA- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|A -CU-GU-UUG -CG-A----- ---------- 1681 -(UAU-AC)A ---------- ---------- ---------- ---------- -GUAAG-CGG 1741 UA--CA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.distas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides distasonis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides distasonis. ORGANISM Bacteroides distasonis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M86695 ATCC 8503 = DSM 20701 (T) BASE COUNT 389 a 354 c 464 g 304 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~CAAUU UAAACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-A--C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCG-RG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCGNG N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--N ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CUU-G C-CUAU---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-GC 481 AU-GAA---- ---------- -------G-C AG-G--G-AU ---CCC-(-- --------GC 541 AU-------- -)-GGGA--A UA-UU----U GC--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--CUN---- 661 ----AUAG-- AUA---G-|G CAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-GA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-CC-(GAG A)-GGC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(C-UA-U- -G)GA-UCGU AAA--CCUC| UUUU-AU-AA 1021 --GG-GAA-- UA-AAGU-GC --GGG-A--( -----CGUG- ---------) --UC-CN-GU 1081 ---------- -------U-U U-GU-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-GU-C UG-UGG-C(- UC-A)A-CCA -UA-G-AAU- 1321 -UGCC-GUUG A-AAC-UGGG G-NGCUU-GA GUA-----UG U-UU-GAGGC AGG-C|GGAA 1381 UG-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACGCAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUGCCA-- ---------- ---------- ---------A 1501 GCC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------U -GUAAG-CGG 1741 CA--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GU-UUG AAC-GC|--- -------A-U ---UCGG--- -AC----CGA 1981 -GGU-G--(- GAAA-)-CAC -C-UUUU--- C--------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- -----G---| CCG-UU-UGC |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-G |-CC--ACU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGU-GG-N A-CU-G-CCA --GC(-G--U AA)-GCU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGC-G-UG -GA--CAAAG GGA-G-G-C- CA-CCU-G(G 2881 -CGA)CAGG- ---------- GA-GCGAA-U CCCC--AAAC -CA-C-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-C- C)-GACUCCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGNN- GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD27 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26214|g498415 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 66 c 81 g 64 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --CC(-G--U AA)-GG--GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUAA-U CUCAU-AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DF-3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. CDC str. CDC Group DF-3. ACCESSION No information KEYWORDS No information. SOURCE str. CDC str. CDC Group DF-3. ORGANISM str. CDC. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint,W .G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Organism information Culture collection: CDC Group DF-3 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41355 LMG 11519 = CDC F9047 = CCUG 17996 isolate_name= CDC Group DF-3 BASE COUNT 402 a 314 c 426 g 325 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAU -GAAC-GC-- UAGC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AG-C AU---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C-UUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AG- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAY -GC-GUAUG- CAA--CCU-A C-CUAC---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GA-- A(-AAAA-)U -UCGG-A--U UAAUGCC-GC 481 AU-AAU---- ---------- -------A-C AG-G--G-GC ---ACC-(-- --------GC 541 AU-------- -)-GGUG--A UA-UU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----GUAG-- AUG---G-|G CAUGC----- -GU|----UC C--AUUA-G- CCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-AGC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGUU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUC-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AC 1021 --UG-GGG-- UA-AAAA-AG --AGG-A--( -----CGUG- ---------) --UC-CU-UU 1081 ---------- -------C-U U-GC-AAGU- A-CAG-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GG-GA- 1261 U-UU-AAG|U CAG---CGGU G-AAA-GU-U UG-AGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCC-GUUG A-AAC-UGGG U-UUCUU-GA GUG-----UA U-UU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-ACGAAG- AACU-CCAA- 1441 -U-U-GC(-G CA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AC-AA CUGACG-CUG AA-G------ -------CN- C-GAAA-UC- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -CU-GU-UUG -UG------- ---------- 1681 -(AUA-UU)A ---------- ---------- ---------- --------CA -AUAAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-UG|--- -------C-A ---UCUG--- -AU----CGA 1981 -UCG-G--(- GAAA-)-CCG -A-UCUU--- C--------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- -----G---| CAG-AU-GCG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-AC-A |-UU--GUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCA --GC(-G--U AA)-GCU-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CC--GGGC- 2821 G-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGU-U-G-C- UA-CUU-G(G 2881 -UGA)CAAG- ---------- AU-GCUAA-U CUCG--AAAG -CC-U-CUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-AG-UG- ACU-NGGG-C 3301 U---ANGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN77 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN77.. ACCESSION No information KEYWORDS No information. SOURCE clone UN77. ORGANISM clone UN77. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63631 BASE COUNT 87 a 61 c 97 g 81 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GGG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UNCC-GUUG A-AAC-UGGG A-GUCUU-GA GUA-----UG G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--AU-AA CUGACG-CUC AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------C -GUAUG-UGA 1741 CU--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN85 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN85.. ACCESSION No information KEYWORDS No information. SOURCE clone UN85. ORGANISM clone UN85. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63637 BASE COUNT 87 a 61 c 98 g 81 t 4049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CAG---CGGU G-AAA-UC-U CG-GGG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCC-GUUG A-AAC-UGGG A-GUCUU-GA GUA-----UG G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--AU-AA CUGACG-CUC AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GU-AUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------C -GUAUG-UGA 1741 CU--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN27 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN27.. ACCESSION No information KEYWORDS No information. SOURCE clone UN27. ORGANISM clone UN27. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63609 BASE COUNT 92 a 59 c 91 g 82 t 4052 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CNUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUN A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-NUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG-A----- ---------- 1681 -(UAU-GA)- ---------- ---------- ---------- --------UA -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN5.. ACCESSION No information KEYWORDS No information. SOURCE clone UN5. ORGANISM clone UN5. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63621 BASE COUNT 91 a 60 c 92 g 82 t 4051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CNUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-N UA-G)GCAG- -CUUGCUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG-A----- ---------- 1681 -(UAU-GA)- ---------- ---------- ---------- --------UA -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN26 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN26.. ACCESSION No information KEYWORDS No information. SOURCE clone UN26. ORGANISM clone UN26. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63608 BASE COUNT 92 a 61 c 94 g 81 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUC-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN19 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN19.. ACCESSION No information KEYWORDS No information. SOURCE clone UN19. ORGANISM clone UN19. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63604 BASE COUNT 92 a 60 c 92 g 82 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-N UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN108 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN108.. ACCESSION No information KEYWORDS No information. SOURCE clone UN108. ORGANISM clone UN108. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63593 BASE COUNT 92 a 60 c 94 g 82 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---CGGU G-AAA-UA-U UC-AGG-C(- UC-A)A-CCU -GA-A-GAC- 1321 -UGCC-GUUG A-AAC-UGUU A-GCCUU-GA GUA-----UA G-AU-GAAGU AGG-C|GGAA 1381 UU-CGUUGU- GUA-GCG(-G UGACA)-UGC -UU-AGAU-A UA-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 ACU--AU-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -UU-GC-AUG -CG------- ---------- 1681 -(AUA-UG)A U--------- ---------- ---------- ---------A -GUAUG-UGA 1741 CC--AA---- --GC-(G... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. ORGANISM 2.7.1.1.3 BAC.FRAGILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.thetai 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides thetaiotaomicron str. E50 VPI 5482 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides thetaiotaomicron str. E50 VPI 5482 (T). ORGANISM Bacteroides thetaiotaomicron. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI 5482 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58763 VPI 5482 (T) = NCTC 10582 = ATCC 29148 (T) biol_source= human feces isolate_name= E50 NB: ATCC 29148 removed because didnot receive culture from ATCC BASE COUNT 395 a 311 c 419 g 340 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NCU UNUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-NAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCAGUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUG GA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CN 481 AU-GGU---- ---------- -------A-U AA-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-NGU---C UU-RU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-ACC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA G)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAA-- UA-AAGU-UU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNUN-A) U-A-C-GGAG |-NAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CA- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGC U-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---UUUG--- -AA----UAU 1981 -AUU-G--(- GAAA-)-CAG -U-AUAG--- ---------- ---CC----- --(GY----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAA-AU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUAA-U CCCA--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.theta2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides thetaiotaomicron str. E50 ATCC 29148 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacteroides thetaiotaomicron str. E50 ATCC 29148 (T). ORGANISM Bacteroides thetaiotaomicron. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29148 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16489 ATCC 29148 (T) = VPI 5482 (T) = NCTC 10582 biol_source= human feces isolate_name= E50 BASE COUNT 390 a 314 c 421 g 333 t 2918 others ORIGIN 1 .......... .......... .......... ....CANUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCNNUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUN NA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-GGC---- ---------- -------A-U AA-U--C-AN ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UU-AU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-ACC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA G)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UNUU-AU-AU 1021 --GG-GAA-- UA-AAGU-NU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CA- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGC U-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---UUUG--- -AA----UAA 1981 -UCU-G--(- GAAA-)-CAG -G-UUAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAA-AU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUNA-U CCCA--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAN--- --CCA-UGAN A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.ovatus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides ovatus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides ovatus. ORGANISM Bacteroides ovatus. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16484 biol_source= human feces BASE COUNT 387 a 304 c 419 g 331 t 2935 others ORIGIN 1 .......... .......... .......... ......AUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUUAGUU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AACUG AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-C-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-GG 481 AU-RGY---- ---------- -------A-U AY-G--A-AC ---AUC-(-- --------GC 541 AU-------- -)-GAU---N NN-NU----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- UUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUNC| UUUU-AU-AU 1021 --GG-GAA-- UA-AAGU-GU --UCC-A--( -----CGUG- ---------) --UG-GA-AU 1081 ---------- -------U-U U-GU-AUGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-UU- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-AAC-UGGC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-NGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUN-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---WCWG--- -AA----UAU 1981 -AUW-G--(- GAAA-)-CWR -U-AUAG--- ---------- ---CC----- --(GY----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAN-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUNA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-R-G-C- UA-CCU-G(G 2881 -YGA)CAGG- ---------- AU-GCUAA-U CCCA--AAAA -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fragil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides fragilis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides fragilis. ORGANISM Bacteroides fragilis. REFERENCE 1 AUTHORS Weisburg,W.G., Oyaizu,Y., Oyaizu,H. and Woese,C.R. TITLE Natural relationship between Bacteroides and Flavobacteria JOURNAL J. Bacteriol. 164, 230-236 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61006|g143965 NB: M61006 updates M11656 BASE COUNT 405 a 329 c 446 g 356 t 2840 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~ACU UUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AU-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CCUU---U -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGC---- ---------- -------A-U AA-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AU----U AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-AU 1021 --AA-GAA-- UA-AAGU-GC --AGU-A--( -----UGUA- ---------) --UA-CU-GU 1081 ---------- -------U-U U-GU-AUGU- A-UUA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CU- 1261 G-GU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GCUG A-UAC-UGUC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GUGG--- -AA----UGA 1981 -UGU-G--(- GAAA-)-CAU -G-UCAG--- U--------- ---GA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UC-------- -----A---| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-GCG-G(G 2881 -UGA)CCGU- ---------- AU-GCUAA-U CCCA--AAAU -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAACACCUCC 3361 UUUC|U..~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.fragi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides fragilis.. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides fragilis. ORGANISM Bacteroides fragilis. REFERENCE 1 AUTHORS Weisburg,W.G., Oyaizu,Y., Oyaizu,H. and Woese,C.R. TITLE Natural relationship between Bacteroides and Flavobacteria JOURNAL J. Bacteriol. 164, 230-236 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11656|g143964 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 404 a 329 c 446 g 354 t 2843 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUACAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AU-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CCUU---U -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGC---- ---------- -------A-U AA-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AU----U AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UA-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-AU 1021 --AA-GAA-- UA-AAGU-GC --AGU-A--( -----UGUA- ---------) --UA-CU-GU 1081 ---------- -------U-U U-GU-AUGU- A-UUA-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GA-CU- 1261 G-GU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GCUG A-UAC-UGUC A-GUCUU-GA GUA-----CA G-UA-GAGGU GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GUGG--- -AA----UGA 1981 -UGU-G--(- GAAA-)-CAU -G-UCAG--- U--------- ---GA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UC-------- -----A---| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-GCG-G(G 2881 -UGA)CCGU- ---------- AU-GCUAA-U CCCA--AAAU -CC-U-CUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-C- C)-GACUUCG -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-UC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.unifor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides uniformis. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides uniformis. ORGANISM Bacteroides uniformis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16486 biol_source= human and swine feces BASE COUNT 351 a 316 c 433 g 326 t 2950 others ORIGIN 1 .......... .......... .......... ...UCAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAACUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---G -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-GGC---- ---------- -------A-U AG-U--U-CU ---UCC-(-- --------GN 541 NU-------- -)-GGU---A GA-AC----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UN- CGA------- -----UG-GA 781 U-NG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -NUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUNUU G-GUCNAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUN-GC-GU 961 G-A-AG-G-A U-GNN--U-G CC(C-UN-U- -G)GG-UUGU NAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UN-AAGU-GA --GGC-A--( -----NNUG- ---------) --UG-CC-NN 1081 ---------- -------U-U U-GU-AUGU- A-CCG-U-AU G-AA--UNAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCN--GCNGC CNCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUN -UU-NGGU|U UNAA-GGGA- GCG-UAG-GC -G|-GA-CG- 1261 C-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG U-GUCUU-GA GUA-----CA G-UA-GAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--N 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUN-UA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUNA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---ACUG--- -AA----UGA 1981 -UGU-G--(- GAGA-)-CAU -G-UCAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAG-UU-GUG |---A|A--G 2161 GU-GC-UGCN UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC NACCC-UU-A |-UC--GAU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GUC-GA-G A-CU-G-CCG --UC(-G--U NA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C NUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CAC-G(G 2881 -CGA)CGUG- ---------- AU-GCUAA-U CCCU--AAAG -CC-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.vulgat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides vulgatus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides vulgatus. ORGANISM Bacteroides vulgatus. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58762 ATCC 8482 = VPI 4245 (T) BASE COUNT 396 a 336 c 446 g 335 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU AUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGNC N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGUC---U -ACUC-U-UG 421 -GAC-AG-CC U--------- ------UC-- U(-GAAA-)G -GAAG-A--U UAAUACA-AG 481 AU-GGC---- ---------- -------A-U CA-U--G-AG ---UCC-(-- --------GC 541 AU-------- -)-GUU---C AC-AU----G AU--UAAA-- ---GG----- ---------- 601 --(------- ---UAUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----GACG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- AUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GUC-UU- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-NGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --AG-GAA-- UA-AAGU-CG --GGU-A--( -----UGGA- ---------) --UA-CC-CG 1081 ---------- -------N-U U-GC-AUGU- A-CUU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-AU -G|-GA-UG- 1261 U-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGA U-AUCUU-GA GUG-----CA G-UU-GAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUGCUN-- ---------- ---------- ---------A 1501 GCU--GC-AA CUGACA-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GCAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GAUG--- -AA----UUA 1981 -CGG-U--(- GAAA-)-GCC -G-UAAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CAU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCA --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG GGC-N-G-C- UA-CCA-C(G 2881 -CGA)GUGG- ---------- AU-GCCAA-U CCCC--AAAA -CC-U-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGG A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACU-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCN-GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.heplyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella heparinolytica. ACCESSION No information KEYWORDS No information. SOURCE Prevotella heparinolytica. ORGANISM Prevotella heparinolytica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16487 Former RDP Sids: Bac.heplyt biol_source= subgingival plaque NB: former name Bacteroides heparinolyticus BASE COUNT 363 a 340 c 444 g 314 t 2915 others ORIGIN 1 .......... .......... .......... .UUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGCC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-U C-CGGU---A -ACUC-C-GG 421 -UAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUCCC-GG 481 AU-AGU---- ---------- -------A-U GG-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UC----C AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GNU---- 661 ----ACCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-UA- GGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -N)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --GG-GAA-- UA-AUUG-UG --GGU-A--( -----CGCN- ---------) --NN-CC-NN 1081 ---------- -------U-U U-GC-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-CG- 1261 C-UU-AAG|U CAG---CUGU G-AAA-GU-U UG-GGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG U-GCCUU-GA GUG-----CA G-UA-UAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCUA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 AGU--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UN)C ---------- ---------- ---------- ---------U -GCAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---ACCG--- -AA----UUA 1981 -UCC-G--(- GAAA-)-CGG -G-UAAG--- ---------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGG-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CAC- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GUG-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GC -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGCA GGC-A-G-C- UC-GGC-G(G 2881 -NGA)CGCC- ---------- CG-GCCAA-U CCCU--AAAU -CC-C-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUCCA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACC-GG-UN- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.zoofor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella zoogleoformans. ACCESSION No information KEYWORDS No information. SOURCE Prevotella zoogleoformans. ORGANISM Prevotella zoogleoformans. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16488 Former RDP Sids: Bac.zoofor ATCC 33285 (T) = VPI D28K-1 biol_source= human gingival sulcus NB: former name Bacteroides zoogleoformans BASE COUNT 359 a 344 c 440 g 307 t 2926 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAN -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGACUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-U C-CGGU---U -ACUC-C-GG 421 -UAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUCCC-GG 481 AU-AGU---- ---------- -------A-U GG-U--G-AU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UC----C AU--UAAA-- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--GNA---- 661 ----ACCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- GCG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-ACC-UA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUNUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUN-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AA 1021 --GG-GAA-- UN-AAUU-GA --GGC-N--( -----CGC.. ......---) .......... 1081 ---------- -------U-U U-GC-AUGU- A-CCU-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-CG- 1261 C-UU-AAG|U CAG---CUGU G-AAA-GU-U UG-GGG-C(- UC-A)A-CCU -UA-A-AAU- 1321 -UGCA-GUUG A-UAC-UGGG C-GUCUU-GA GUG-----CG G-CA-CAGGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAGG- AACU-CCGU- 1441 -U-C-GC(-G AA-G)GCGG- -CUUGCCG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UN)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUNAUU-CG -(AUNAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---ACCG--- -AA----UUA 1981 -CCU-U--(- GAAA-)-GGG -G-UAAG--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGG-UU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--GAC- 2281 AG--UUAC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GUC-GA-G A-CU-G-CYG --UC(-G--U AA)-GAU-RC -GAGG-A-AG 2761 G-GG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGCA AGC-C-G-C- CC-GGC-G(G 2881 -CGA)CGCC- ---------- CG-GCUAA-U CCUA--AAAA -CC-C-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UGC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-CC-CU A-GGGU-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.eggert 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides eggerthii. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides eggerthii. ORGANISM Bacteroides eggerthii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16485 NCTC 11185 (T) = VPI T5-42B-1 = ATCC 27754 biol_source= human feces BASE COUNT 386 a 320 c 427 g 334 t 2909 others ORIGIN 1 .......... .......... .........U NUUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCAAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-G C-CGAU---A -ACUC-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -AAAG-A--U UAAUACC-CG 481 AU-AGU---- ---------- -------A-U AG-U--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GGU---U UC-AC----U AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUCG-- AUG---G-|G GAUGC----- -GU|----UC C--AUUA-G- AUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GUC-AA- CGA------- -----UG-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-A-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AC 1021 --GG-GAA-- UA-AAGU-GG --AGU-A--( -----UGCA- ---------) --UA-CU-NC 1081 ---------- -------U-U U-GU-AUGU- A-CCG-U-AU G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GG-UG- 1261 C-UU-AAG|U CAG---UUGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCA-GUUG A-UCC-UGGG C-GCCUU-GA GUG-----CA G-NA-UAGGU AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUN AU-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------A -GUAAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUA AAU-UG|--- -------C-A ---GCGG--- -AA----UGU 1981 -AGU-G--(- GAAA-)-CAU -U-ACAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UAU- 2281 AG--UUAC-U AU-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUG-GA-G A-CU-G-CCG --UC(-G--U AA)-GAU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAA GGC-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCUAA-U CCCG--AAAA -CC-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-ACCU -GAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_42 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.42. str. PUS3.42. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.42. str. PUS3.42. ORGANISM str. PUS3.42. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43699|g1172143 isolate_name= PUS3.42 BASE COUNT 355 a 340 c 458 g 300 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAGUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGUU--AAC -GC-GUACC- GAA--CCU-G C-CCAU---C -ACAC-A-GG 421 -GAU-AG-GC U--------- ------UG-- C(-GAAA-)G -CAGA-A--U UAAUACC-UG 481 AU-GGU---- ---------- -------C-U CA-G--U-UG ---UAU-(-- --------GC 541 AU-------- -)-GUA---U GA-UU----G AG--UAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--GUG---- 661 ----AUGG-- AUG---G-|C GGUGC----- -GU|----CC C--AUUAAG- GAA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-UCC-UU- CGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AAA-A-CUC -(UACG)--G GAG-GC-AG- C-A---GUGA 901 GGA-AUGAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-GG-G-A U-GAA--R-G CC(C-UU-G- -U)GG-UCGU AAA--CCGC| UUUU-AU-CA 1021 --GU-GAA-- UA-AAGU-GG -CACC-A--( -----CGUG- ---------) --UG-GUGUC 1081 ---------- -------A-U U-GC-AGGU- A-GCU-G-AA G-AA--AAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -G|-GG-AG- 1261 U-GU-AAG|U CAG---CUGU U-AAA-UA-U CA-GGG-C(- CC-A)A-CUC -UG-U-UA-- 1321 -UGCA-GUUG A-AAC-UAUA U-UUCUU-GA GUA-----CG C-AC-AGGGA UGG-C|GGAA 1381 UU-CAGGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-CUGAAG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCAUCCG-- ---------- ---------- ---------G 1501 AGC--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CA-GUUCGG -CC------- ---------- 1681 -(GUU-UA)- ---------- ---------- ---------- ---------G -GUCGAGUUG 1741 UC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-CA|--- -------A-G ---AGUG--- -AC----GAG 1981 -UGC-A--(- GAGA-)-UGC -G-CUUA--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-UU-UUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-AGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-U |-UC--UAC- 2281 GA---UGC-C AU-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CC-C- C-GUG-GA-U A-CU-G-CCG --CC(-G--C AA)-GGC--- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-C-GG -AG--CAGCA GGA-A-G-C- UA-CCU-G(G 2881 -CGA)CAGG- ---------- AU-GCUGA-U CCCA--AAAC -CC-G-GCC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-C- C)-GACUCCA -CGAAGC-CG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-A-GCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGU-AAA ACC-GG-UG- AUU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.1.4 PREVOTELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.1.4 PREVOTELLA_SUBGROUP. ORGANISM 2.7.1.1.4 PREVOTELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. 23T. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. 23T. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70835|g546812 isolate_name= 23T BASE COUNT 98 a 83 c 122 g 86 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. TC18. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. TC18. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70836|g546813 isolate_name= TC18 BASE COUNT 98 a 83 c 122 g 86 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumcol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola subsp. ruminicola ATCC 19189 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola subsp. ruminicola ATCC 19189 (T). ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16482 biol_source= bovine rumen BASE COUNT 360 a 325 c 442 g 317 t 2932 others ORIGIN 1 .......... .......... .......... ..UNCAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UNC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAUCGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGAU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCUA---U -AGUA-G-AG 421 -AAU-AG-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--U UAAUGCU-CU 481 AU-GUU---- ---------- -------G-U AU-U--U-AG ---AGG-(-- --------AC 541 AU-------- -)-CUN---A AG-AA----U AC--CAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CUA---- 661 ----UAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- GUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AU 1021 --AG-GGA-- UA-AAGU-CG --GGG-A--( -----CGUG- ---------) --UC-CC-NG 1081 ---------- -------U-U U-GU-AGGU- A-CUA-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-N-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GA-UG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UN-A)A-CGG -CN-N-AAC- 1321 -UGCG-UCGC G-AAC-UGGU U-AUCUU-GA GUG-----AG U-UC-GAUGU UGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCAACAA-- ---------- ---------- ---------G 1501 GCC--UN-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-NU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUGAG-CGG 1741 CC--AA---- --GA-(GAA- ---A)U-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AGCG--- -AA----CGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CGC-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUNA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UN-U |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -UA--CAGAG AGU-C-G-G- AK-MWW-S(G 2881 -CAA)KWWK- ---------- SW-UCUAA-U CCUU--AAAG -CC-U-UCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GC-GCUU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GAGC-GAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. TC2-24. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. TC2-24. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70882|g546814 isolate_name= TC2-24 BASE COUNT 94 a 88 c 127 g 79 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -G|-GG-GA- 1261 G-GU-AAG|C GUG---ACGU G-AAA-UG-U AG-CCG-C(- UC-A)A-CGG -CU-G-AAC- 1321 -UGCG-UCGC G-AAC-UGNC U-CUCUU-GA GUG-----AG U-AC-GACGU CAG-C|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGA-- ---------- ---------- ---------G 1501 UCC--UU-UA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. GA33. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. GA33. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70837|g546815 isolate_name= GA33 BASE COUNT 95 a 87 c 127 g 80 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -U|-GG-AG- 1261 A-UU-AAG|C GUG---ACGU G-AAA-UG-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCG-UCGC G-AAC-UGGU U-UCCUU-GA GUG-----UA U-UC-GACGU CAG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCGA-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUA AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.bucca2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccae str. 938.11 ATCC 33690. ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccae str. 938.11 ATCC 33690. ORGANISM Prevotella buccae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33690 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16478 biol_source= human periodontal pocket isolate_name= 938.11 BASE COUNT 327 a 391 c 478 g 271 t 2909 others ORIGIN 1 .......... .......... .......... ..UNCNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-ACCGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGC---G -ACCA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUC---- ---------- -------C-U CC-U--U-UG ---AAG-(-- --------GC 541 AU-------- -)-CUG---A CG-AG----G AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUC---- 661 ----ACGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-C-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-UG --CCC-A--( -----CGNG- ---------) --UG-GG-UN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -C|-GC-CG- 1261 U-GC-AAG|C GUG---CCGU G-AAA-AG-C AG-CGG-C(- CC-A)A-CCG -CU-G-CCC- 1321 -UGCG-GCGC G-AAC-UGCU U-GGCUU-GA GUG-----CG C-CG-GAAGC GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCCGCUG-- ---------- ---------- ---------U 1501 GGC--GC-CA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UA-CC-- -------C|G -CU-GU-CCG -GC------- -C-------- 1681 -(CGU-AC)G ---------- ---------- ---------- --------GU -CUGGG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGNAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----UGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GCG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 C-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG GGC-U-G-U- CC-GCA-U(G 2881 -CAA)GUGC- ---------- GR-GCGAA-U CCCC--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.buccae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccae str. VPI D3A-6 ATCC 33574 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccae str. VPI D3A-6 ATCC 33574 (T). ORGANISM Prevotella buccae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33574 (T), VPI D3A-6 ATCC 33574 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16477 biol_source= gingival crevice isolate_name= VPI D3A-6 BASE COUNT 326 a 388 c 477 g 270 t 2915 others ORIGIN 1 .......... .......... .......... ....CAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-ACCGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGC---G -ACCA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUC---- ---------- -------C-U CC-U--U-UG ---AAG-(-- --------GC 541 AU-------- -)-CUG---A CG-AG----G AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUC---- 661 ----ACGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-C-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-N- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-UG --CCC-A--( -----CGUG- ---------) --UG-GG-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-CAG-GC -C|-GC-CG- 1261 U-GC-AAG|C GUG---CCGU G-AAA-AG-C AG-CGG-C(- CC-A)A-CCG -CU-G-CCC- 1321 -UGCG-GCGC G-AAC-UGCU U-GGCUU-GA GUG-----CG C-CG-GAAGC GGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCCGCUG-- ---------- ---------- ---------U 1501 GGC--GC-NA CUGACG-CUG AG-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UA-CC-- -------C|G -CU-GU-CCG -GC------- -C-------- 1681 -(CGU-AC)G ---------- ---------- ---------- --------GU -CUGGG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----UGA 1981 -UUC-A--(- GAGA-)-UGA -U-GAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GCG-GN-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 C-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG GGC-U-G-U- CC-GCA-U(G 2881 -CAA)GUGC- ---------- GR-GCGAA-U CCCC--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.dental 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella dentalis str. ES2645 DSM 3688 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella dentalis str. ES2645 DSM 3688 (T). ORGANISM Prevotella dentalis. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE 16S rRNA gene similarities indicate that Hallella seregens (Moore and Moore) and Mitsuokella dentalis (Haapsalo et al.) are genealogically highly related and are members of the genus Prevotella: emended description of the genus Prevotella (Shah and Collins) and description of Prevotella dentalis comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (4), 832-836 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3688 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81876|g1565276 Former RDP Sids: Prv.denti3 DSM 3688 (T) = ATCC 49559 isolate_name= ES2645 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 339 a 371 c 477 g 293 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGNC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCGGA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCUGC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-A C-CUUC---A -AGCA-G-GG 421 -GAC-AA-UC C--------- ------GU-- A(-GAAA-)U -GCGG-U--C UGAUACC-CU 481 AU-GUA---- ---------- -------U-U CC-A--A-CG ---AGG-(-- --------UC 541 CU-------- -)-CCG---U GU-UG----G AA--GAAA-- ---GG----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----C--C- G--CUU---- 661 ----GUUG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GGA-- UA-AAGU-GC --GCC-A--( -----CGUG- ---------) --UG-GU-GU 1081 ---------- -------U-U U-GC-AGGU- A-CCG-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GC-AU- 1261 G-UC-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CAC -CU-G-GAU- 1321 -UGCA-GCGC G-AAC-UGUC G-UGCUU-GA GUG-----UG C-GC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAGG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--AU-AA CUGACG-CUG AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-CCG -CC-C----- -U-------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------GG -GCGUG-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----CGA 1981 -UCC-A--(- GAGA-)-UGG -U-GAGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUU-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UCAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GUG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-GG -CA--CAGCA AGC-C-G-G- CC-GCG-U(G 2881 -CAA)ACGC- ---------- GG-UCCAA-U CCUG--AAAU -CC-C-CCC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-G).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.loesch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella loescheii. ACCESSION No information KEYWORDS No information. SOURCE Prevotella loescheii. ORGANISM Prevotella loescheii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16481 biol_source= gingival crevice BASE COUNT 331 a 359 c 475 g 292 t 2919 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGGGU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCUU---C -ACCA-C-GG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUACC-GU 481 AU-GUU---- ---------- -------G-U CC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UU-UG----G AC--GAAA-- ---GG----- ---------- 601 --(------- ---UUUR--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUG---G-|G GAUGC----- -GU|----CY G--AUUA-G- CUA-G---AY 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G U|-GGC-UN- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-AA --CNC-A--( -----CGUG- ---------) --UG-CGUNN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GC-GC- 1261 C-UU-AAG|C GUG---UUGU G-AAA-UC-C RG-GUG-C(- UC-A)A-CAU -CY-G-GNU- 1321 -UGCA-GCGC G-AAC-UGGG G-CGCUU-GA GUG-----CG C-UC-AAAGU AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAGG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCUACUG-- ---------- ---------- ---------U 1501 AGC--GC-UA CUGACG-CUG AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------C|G -UU-GU-CGG -CG------- -C-------- 1681 -(CCU-UG)G ---------- ---------- ---------- ---------C -GUCGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-G ---GCGG--- -AA----CGA 1981 -UUC-G--(- GAGA-)-YGA -U-GAGG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CNG-CY-GYG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CY-G |-UC--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-G-CA -UA--CAGAG AGU-C-G-G- UG-GCA-U(G 2881 -CGA)AUGC- ---------- CA-UCCAA-U CCUC--AAAG -UG-C-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GY-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-GGGY-RAA ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oralis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oralis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella oralis. ORGANISM Prevotella oralis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16480 biol_source= human periodontal pocket BASE COUNT 339 a 351 c 456 g 319 t 2911 others ORIGIN 1 .......... .......... .......... ....CAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCGG 121 G--GC-AU-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGGU-UG (--UU----- ---------- ---------- 241 --------UU -)CA-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUA-C-GG 421 -CAU-AC-CC C--------- ------GU-- U(-GAAA-)G -GCGG-C--C UNAUUCC-GU 481 AU-GCA---- ---------- -------G-U CC-G--A-AG ---CAG-(-- --------UC 541 AU-------- -)-CUN---A UU-UG----G AC--GAAA-- ---GGUA--- ---------- 601 --(------- ---UAUUC-- ---)------ ---------| ---UAU--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CC G--AUUA-G- CCA-G---CC 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G G|-GGC-AU- CGA------- -----UC-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GUA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGG-UU --GGG-A--( -----CGUG- ---------) --UC-CN-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GN-NN- 1261 U-UU-AAG|C GUG---CUGU G-AAA-UG-U AC-CGG-C(- UC-A)A-CCG -GU-N-AUG- 1321 -UGCA-GCGC G-AAC-UGGG A-AUCUU-GA GUA-----CG C-AG-UAAGC AGG-C|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------U 1501 AGC--GU-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-CGG -CC------- ---------- 1681 -(NNU-UU)U ---------- ---------- ---------- ---------G -GUCGG-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AUUG--- -AC----UUG 1981 -AAU-A--(- GAGA-)-UAU -U-CAU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAU-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-N |-UU--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-GUG-AA-U A-CU-G-CCG --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-G-CG -UA--CAGCG AGU-C-G-G- CC-GUA-U(G 2881 -UAA)AUGC- ---------- GG-UCCAA-U CCUU--AAAA -CG-U-GCC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ U-CG-GC-CU A-AGGC-AAU ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.buccls 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella buccalis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella buccalis. ORGANISM Prevotella buccalis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16476 biol_source= dental plaque BASE COUNT 346 a 344 c 459 g 313 t 2914 others ORIGIN 1 .......... .......... .......... ..UACAAUGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GCAG 121 G--GU-AA-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-AC--G ACUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---G -ACCA-C-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUACC-GU 481 AU-GAC---- ---------- -------G-U CG-U--U-UG ---CUG-(-- --------AC 541 AU-------- -)-CAA---A UA-AC----G AU--UAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GY --GCG-A--( -----CGUG- ---------) --UC-GU-GC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UNNA-GGGA- GCG-UAG-GC -C|-GC-CA- 1261 G-GU-AAG|C GUG---UUGU G-AAA-UG-U AC-CGG-C(- UC-A)A-CCG -GU-N-AAU- 1321 -UGCA-GCGC G-AAC-UGUC U-GGCUU-GA GUG-----CA C-GG-UAAGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------C 1501 AGU--GC-GA CUGACG-CUG AU-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|C -UG-UU-CCG -CC------- -U-------- 1681 -(UUU-UG)U ---------- ---------- ---------- ---------G -GCGGN-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAC-UG|--- -------C-C ---AGUG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGC-UG-GUG |---G|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UU--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-G-CA -UA--CAGAG UGU-U-G-G- CU-UAA-C(G 2881 -CAA)GUUU- ---------- GG-UCUAA-U CUUC--AAAG -UG-U-CUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.bivia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella bivia. ACCESSION No information KEYWORDS No information. SOURCE Prevotella bivia. ORGANISM Prevotella bivia. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16475 biol_source= urogenital tract BASE COUNT 372 a 323 c 435 g 331 t 2915 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-A C-CCAU---A -ACUA-A-GG 421 -GAU-AA-CC C--------- ------AG-- C(-GAAA-)G -UUGG-A--C UNAUACC-UN 481 AU-GUA---- ---------- -------U-U CG-U--U-UG ---AUC-(-- --------UC 541 AU-------- -)-GAG---A UU-NC----G AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AU 1021 --GG-GGA-- UA-AAGU-GG --GGA-A--( -----CGUG- ---------) --UU-CC-CN 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-UU- 1261 G-GU-AAG|C GUG---UUGU G-AAA-UG-U AG-UAG-C(- UC-A)A-CUU -CU-A-GAU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUG-----CG C-AC-AACGU AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUG AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CA------- ---------- 1681 -(CCU-AG)- ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAUG--- -AA----CGA 1981 -UUU-A--(- GAGA-)-UAA -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-U-GG -UA--CAGAU AGU-U-G-G- UC-GUG-U(G 2881 -CAA)AUAC- ---------- GA-UCUAA-U CCUU--AAAA -CC-A-UUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-AC-CU A-GGGC-AAA ACU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.3_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS3.3. str. PUS3.3. ACCESSION No information KEYWORDS No information. SOURCE str. PUS3.3. str. PUS3.3. ORGANISM str. PUS3.3. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43698|g1172142 isolate_name= PUS3.3 BASE COUNT 346 a 351 c 460 g 296 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CUCU---G -ACUG-A-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -UCGG-C--C UAAUACC-UC 481 AU-GGC---- ---------- -------A-U CG-U--C-UG ---CGG-(-- --------GC 541 AU-------- -)-CCA---A CG-AC----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUCA-- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CGUG- ---------) --UC-CU-UC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CGU -CU-G-CAC- 1321 -UGCA-GCGC G-AAC-UGGU C-CACUU-GA GUG-----UG C-AC-AACGC AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -UU-GU-CAG -GC------- -U-------- 1681 -(GUU-UC)A ---------- ---------- ---------- ---------G -CCUGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CUG-GC-UUG AAUUUG|--- -------C-A ---GACG--- -AA----GGC 1981 -UUC-A--(- GAGA-)-UGA -A-G-CG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-U |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GUA-GA-U A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG AGU-C-G-G- UC-GUG-U(G 2881 -CAA)ACAC- ---------- GA-UCUAA-U CCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AUU-GGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oris. ACCESSION No information KEYWORDS No information. SOURCE Prevotella oris. ORGANISM Prevotella oris. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16474 biol_source= gingival crevice BASE COUNT 349 a 354 c 465 g 300 t 2908 others ORIGIN 1 .......... .......... .......... ..UACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CUCU---G -ACUG-A-GG 421 -GAU-AA-CC C--------- ------GU-- C(-GAAA-)G -UCGG-C--C UAAUACC-UC 481 AU-GGC---- ---------- -------A-U CG-U--C-UG ---CGG-(-- --------GC 541 AU-------- -)-CCA---A CG-AC----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUCA-- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GN- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CGUG- ---------) --UC-CU-UC 1081 ---------- -------A-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-C AG-GUG-C(- UC-A)A-CGU -CU-G-CAC- 1321 -UGCA-GCGC G-AAC-UGGU C-CACUU-GA GUG-----UG C-GC-AACGC AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUGCGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -UU-GU-CAG -GC------- -U-------- 1681 -(GUU-UC)A ---------- ---------- ---------- ---------G -CCUGG-UGA 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -AA----SGM 1981 -UUC-A--(- GAGA-)-UGA -U-GACG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-NU-N |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG AGU-U-G-A- UU-UUG-U(G 2881 -CAA)ACAC- ---------- GA-UCUAA-U CCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CG-GC-CU A-GGGC-AAA ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. 223/M2/7. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. 223/M2/7. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70881|g546816 isolate_name= 223/M2/7 BASE COUNT 94 a 87 c 124 g 82 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU C-CACUU-GA GUG-----CG C-NC-AACGC GGG-C|GGAA 1381 UU-UGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCGCGG-- ---------- ---------- ---------G 1501 AGC--CN-AA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-UU-UCG -GU------- ---------- 1681 -(CAU-UA)G ---------- ---------- ---------- ---------A -CCGUG-AGG 1741 CC--AA---- --GU-(GAA- ---A)A-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.rumco7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella ruminicola str. M384. ACCESSION No information KEYWORDS No information. SOURCE Prevotella ruminicola str. M384. ORGANISM Prevotella ruminicola. REFERENCE 1 AUTHORS Avgustin,G., Wright,F. and Flint,H.J. TITLE Genetic diversity and phylogenetic relationships among strains of Prevotella (Bacteroides) ruminicola from the rumen JOURNAL Int. J. Syst. Bacteriol. 44, 246-255 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70838|g546817 isolate_name= M384 BASE COUNT 96 a 83 c 123 g 87 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -G|-GU-AU- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-GUG-C(- UC-A)A-CAU -CU-G-ACU- 1321 -UGCA-GCGC G-AAC-UGGU U-UACUU-GA GUA-----CG C-AC-AACGU AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--GC-CA CUGACG-CUG AA-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-CU-GAG -UC------- ---------- 1681 -(CUU-UU)G ---------- ---------- ---------- ---------G -AUUUG-GGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.oulora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella oulora str. WPH 179 ATCC 43324 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella oulora str. WPH 179 ATCC 43324 (T). ORGANISM Prevotella oulora. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43324 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16472 Former RDP Sids: Prv.oulera ATCC 43324 (T) = NCTC 11871 biol_source= human gingival crevice isolate_name= WPH 179 BASE COUNT 355 a 321 c 435 g 311 t 2954 others ORIGIN 1 .......... .......... .......... ...ACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UGACGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUNNU NA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UN--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCAU---U -ACAG-G-GG 421 -AAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCAG-A--C UAAUGCC-CC 481 AU-GGU---- ---------- -------A-U UC-U--C-NG ---CAG-(-- --------AC 541 AU-------- -)-CUG---A UN-NN----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-NAC-GG) -C-CCACN-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GN 1021 --GG-GAA-- UA-AAGU-GG --NNU-A--( -----CGUG- ---------) --UA-GU-UU 1081 ---------- -------A-U U-GU-AUGU- A-CCC-U-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GU-AG- 1261 A-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-N-ACU- 1321 -UGCA-GCNC G-AAC-UNGU U-UACUU-GA GUG-----UG C-AC-AACGU AGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGC--AC-AA CUGACG-CUU AA-G------ -------CU- N-GAAG-GU- GU-NGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--N 1621 AAC-G-CUGG A--UG-CC-- -------C|G -CU-GU-UGG -CU------- ---------- 1681 -(NNU-UN)G ---------- ---------- ---------- ---------A -GUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUNA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---GACG--- -AA----CGC 1981 -GGC-A--(- GAGA-)-UGC -N-NAGG--- ---------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NNU-CU-NNN |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AU-CAN---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-AA-U A-CU-G-CCN --NN(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-G- UU-GCA-U(G 2881 -UAA)AUGC- ---------- GA-UCGAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -NAA-G-UCC 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-NAA ACU-GG-UN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melani 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica str. B282 ATCC 25845 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica str. B282 ATCC 25845 (T). ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25845 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16469 ATCC 25845 (T) = VPI 4196 = JCM 6325 = VPI 2381 biol_source= sputum isolate_name= B282 BASE COUNT 361 a 335 c 447 g 314 t 2919 others ORIGIN 1 .......... .......... .......... ..UACNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUG-U-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUACC-GC 481 AU-AGU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-UG----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-UA --GGN-A--( -----CGUG- ---------) --UC-CC-NA 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -U|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-AAU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-NC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-NNG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-NG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUN AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-N |-UN--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica str. N-58-71A ATCC 43982. ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica str. N-58-71A ATCC 43982. ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43982 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16470 ATCC 43982 = VPI 9343 biol_source= human, atypical isolate_name= N-58-71A BASE COUNT 358 a 338 c 449 g 316 t 2915 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---U -ACUG-U-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUAUC-GC 481 AU-AGU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-UG----A AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-CA --GUC-A--( -----CGUG- ---------) --UN-AU-UG 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-NC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.verora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella veroralis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella veroralis. ORGANISM Prevotella veroralis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16473 biol_source= human oral cavity BASE COUNT 372 a 335 c 452 g 315 t 2902 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCAU---A -ACUA-A-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-UU 481 AU-GUA---- ---------- -------A-U UC-U--U-AG ---AUG-(-- --------AC 541 AU-------- -)-CAG---A AG-AG----A AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AUGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-AU 1021 --GG-GGA-- UA-AAGU-CA --AUC-A--( -----CGUG- ---------) --UG-AU-UG 1081 ---------- -------U-U U-GC-AGGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUU-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-AG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-ACG-C(- UC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-UCCUU-GA GUA-----CG C-AC-AACGU UGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -UA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -AUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----GGA 1981 -UUU-A--(- GAGA-)-UAA -U-GACG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)AUUG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.denti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella denticola. ACCESSION No information KEYWORDS No information. SOURCE Prevotella denticola. ORGANISM Prevotella denticola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16466 ATCC 33185 = VPI 10043 biol_source= maxillary atrium BASE COUNT 337 a 368 c 477 g 277 t 2917 others ORIGIN 1 .......... .......... .......... ..UNCNGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCAA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGU---U -ACUG-C-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCNG-A--C UAAUACC-GC 481 AU-GUU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-CG----A AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----U--C- G--GUA---- 661 ----ACGG-- AGG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-GAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGG-A--( -----CG... ......---) .......... 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- CC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-CCCUU-GA GUA-----CG C-GC-AACGC CGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CCGGCGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUN AA-G------ -------CU- N-AAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--N 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GC-UGG -UG------- ---------- 1681 -(CCU-UG)- ---------- ---------- ---------- ---------C -GCCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GN-UUG AAU-CG|--- -------C-A ---GGAG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- C-GGG-GN-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG UGC-N-G-G- GU-GGG-C(G 2881 -CGA)GCCG- ---------- CA-UCCAA-U CUUG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.dentic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella denticola str. 1210 ATCC 35308 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella denticola str. 1210 ATCC 35308 (T). ORGANISM Prevotella denticola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35308 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16467 ATCC 35308 (T) = NCDO 2352 biol_source= dental plaque isolate_name= 1210 BASE COUNT 341 a 367 c 463 g 275 t 2930 others ORIGIN 1 .......... .......... .......... ..UACAGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCN A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUNAA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-U C-CCGU---U -ACUG-C-GG 421 -GAU-AA-CC U--------- ------GC-- C(-GAAA-)G -GCAG-A--C UAAUACC-GC 481 AU-GUU---- ---------- -------C-U UC-G--A-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-NG----A AG--CAAA-- ---GA----- ---------- 601 --(------- ---UCCR--- ---)------ ---------| -----U--C- G--GUA---- 661 ----ACGG-- AGG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-GAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UNA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-GA --GGN-A--( -----CGNN- ---------) --NC-CN-NN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GCG-UAG-GC -C|-GG-GG- 1261 A-UU-AAG|U GUG---UUGU G-AAA-UG-U AG-GCG-C(- CC-A)A-CGU -CU-G-ACU- 1321 -UGCA-GCGC A-UAC-UGGU U-CCCUU-GA GUA-----CG C-GC-AACGC CGG-C|GGAA 1381 UU-CGUCGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACGAAG- AACC-CCNA- 1441 -U-U-GC(-G AA-G)GCAG- -CCGGCGG-- ---------- ---------- ---------G 1501 AGC--GC-AA CUGACG-CUG AA-G------ -------CU- N-NAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GC-UGG -UG------- ---------- 1681 -(CCN-UG)- ---------- ---------- ---------- ---------C -GCCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GGAG--- -AA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-GCG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UNAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-C |-UC--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- C-GGG-GA-C A-CU-G-CCG --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-N-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -CA--CAGAG UAC-N-N-N- GU-NGG-C(G 2881 -CGA)GCCG- ---------- CA-UCUAA-U CUUG--AAAA -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -NAA-G-UCC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ U-CG-GC-CU A-GGGC-NAA ACU-GG-UN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.corpor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella corporis. ACCESSION No information KEYWORDS No information. SOURCE Prevotella corporis. ORGANISM Prevotella corporis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16465 biol_source= cervical swab BASE COUNT 357 a 343 c 454 g 311 t 2911 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCCU---U -ACCA-G-GG 421 -AAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUGCC-CU 481 AU-GGA---- ---------- -------G-U CC-U--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CAG---A UU-AG----G AC--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUAGG-A-A 841 (CUGA-GA-C ACG)--GUCC -UAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCU A)-GCC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-GC 1021 --GG-GGA-- UA-AAGU-CA --CCC-A--( -----CGUG- ---------) --UG-GG-UN 1081 ---------- -------U-U U-GC-AGGU- A-CCG-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 GGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-G-AAC- 1321 -UGCA-GCGC G-AAC-UGGC U-GGCUU-GA GUA-----CA C-GC-AACGU GGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCUA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACGG-- ---------- ---------- ---------G 1501 AGU--GU-CA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UGG -CG------- ---------- 1681 -(CUU-UG)- ---------- ---------- ---------- ---------C -GUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GAGG--- -AA----AGA 1981 -UCC-A--(- GAGA-)-UGG -U-GAUN--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CN-N |-UU--UCC- 2281 GG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- C-GGG-GA-C A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-G- UG-CAA-U(G 2881 -CAA)AUUG- ---------- CA-UCAAA-U CUAU--AAAU -CC-G-GUC- UCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-NGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.disien 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella disiens. ACCESSION No information KEYWORDS No information. SOURCE Prevotella disiens. ORGANISM Prevotella disiens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16483 biol_source= urogenital tract BASE COUNT 376 a 324 c 437 g 339 t 2900 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AC-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CACUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GAC|-GU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUC- CAA--CCU-G C-CCUU---U -ACUU-G-GG 421 -GAU-AA-CC C--------- ------GU-- U(-GAAA-)G -ACGG-A--C UAAUACC-CA 481 AU-GAU---- ---------- -------A-U UC-A--U-UG ---AUG-(-- --------AC 541 AU-------- -)-CUC---A UU-UG----A AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAG A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-UU 1021 --GG-GNA-- UA-AUCG-AC --AUU-A--( -----CGUG- ---------) --UA-AUGUC 1081 ---------- -------U-U U-GC-AUGU- A-CCA-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-UG- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UG-U AG-AUG-C(- UC-A)A-CAU -CU-G-ACU- 1321 -UGCA-GCGC G-AAC-UGGC U-GACUU-GA GUA-----CA C-AC-AACGU AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CA------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------U-A ---GGAG--- -CA----CGA 1981 -UAC-A--(- GAGA-)-UGU -U-GAGG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-CU-AUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GAG-GA-U A-CU-G-CCA --CC(-G--U AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAA UGU-U-G-G- UU-UCA-U(G 2881 -UAA)AUGU- ---------- AA-UCUAA-U CUUU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.interm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ORGANISM Prevotella intermedia. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25611 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16468 ATCC 25611 (T) = JCM 7365 = VPI 4197 biol_source= empyema isolate_name= B422 (S.Finegold) BASE COUNT 346 a 347 c 451 g 316 t 2916 others ORIGIN 1 .......... .......... .......... ..UACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-U C-CCUC---C -ACUC-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUU---- ---------- -------G-U CC-A--C-AU ---AUG-(-- --------GC 541 AU-------- -)-CUG---A CG-UG----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UGCGG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-A-U U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UG 1021 --GG-GAG-- UA-AAGC-G- --GGC-A--( -----CGUG- ---------) --UG-CC-NN 1081 ---------- -------N-U U-GC-AUUU- A-CCC-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -CU-A-CCU- 1321 -UGCA-GCGC G-AAC-UGGC G-GACUU-GA GUG-----CA C-GC-AACGU AUG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGACG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(CCU-NG)- ---------- ---------- ---------- ---------C -GCUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -CA----GGA 1981 -UAC-A--(- GAGA-)-UGU -U-GACU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AU-NAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-Y A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-URA-U(G 2881 -CAA)AUMG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.inter2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella intermedia str. B422 (S.Finegold) ATCC 25611 (T). ORGANISM Prevotella intermedia. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25611 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73965|g509129 ATCC 25611 (T) = JCM 7365 = VPI 4197 biol_source= empyema isolate_name= B422 (S.Finegold) BASE COUNT 344 a 347 c 450 g 314 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-UAU-A -GGC-UU--A ACAC-AUGCA A-GUCCGAGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUC- CAA--CCU-U C-CCUC---C -ACUC-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUU---- ---------- -------G-U CC-A--C-AU ---AUG-(-- --------GC 541 AU-------- -)-CUG---A CG-UG----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GAGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UGCGG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GUA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AGGA-U U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UG 1021 --GG-GAG-- UA-AAGC-GG --GGC-A--( -----CGUG- ---------) --UG-CC-CY 1081 ---------- -------U-U U-GC-AUUU- A-CCC-U-UC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -CU-A-CCU- 1321 -UGCA-GCGC G-AAC-UGGC G-GACUU-GA GUG-----CA C-GC-AACGU AUG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGACG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CGUACGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CG-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(CCU-GG)- ---------- ---------- ---------- ---------C -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GACG--- -CA----GGA 1981 -UAC-A--(- GAGA-)-UGU -U-GACU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CU-U |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UGA-U(G 2881 -YAA)AUCG- ---------- CA-UCCAA-U CUUG--AAAG -CC-G-GUC- CCAGUUCGGA 2941 C-UGAGGUC- (UGCAAC-C- C)-GACCUCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCS-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- SG-GU-GCCU -GAA-G-UUC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAA ACU-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigres 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. Lambe 729-74 ATCC 33563 (T). ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. Lambe 729-74 ATCC 33563 (T). ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33563 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16471 ATCC 33563 (T) = VPI 8944 = NCTC 9336 biol_source= dental plaque (gingivitis) isolate_name= Lambe 729-74 BASE COUNT 337 a 358 c 455 g 304 t 2922 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--NN-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-G C-CCCN---U -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UNAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA--CAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| NUUU-AU-GU 1021 --GG-GAA-- UA-AAUU-G- ----C-A--( -----CGUG- ---------) --UG-CG-CN 1081 ---------- -------N-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CW-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -C-------- ---------- 1681 -(-CC-U-)- ---------- ---------- ---------- ---------- -GCCUG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CA----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAC ACC-GG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigre2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. B515 ATCC 25261. ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. B515 ATCC 25261. ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Olsen,I. and Fraser,G.J. TITLE Phylogeny of Bacteroides, Prevotella, and Porphyromonas spp. and related bacteria JOURNAL J. Bacteriol. 176, 725-732 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25261 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L16479 ATCC 25261 = VPI 4203 biol_source= laryngotomy wound isolate_name= B515 NB: ATCC lists this as Prevotella intermedia BASE COUNT 338 a 351 c 449 g 300 t 2938 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUC-GUGG 121 G--NA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUANG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UU--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GNAUC- CAA--CCU-G C-CCCN---N -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UNAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA--CAAA-- ---GG----- ---------- 601 --(------- ---UNUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| NUUU-AU-GU 1021 --GG-GAA-- UA-AAGU-G- ----C-A--( -----CGUG- ---------) --UG-CG-CN 1081 ---------- -------N-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-N AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 NGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- N-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -C-------- ---------- 1681 -(-CC-U-)- ---------- ---------- ---------- ---------- -GCCNG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CU----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-NNNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-UAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAN ACC-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.nigre3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella nigrescens str. Lambe 729-74 NCTC 9336. ACCESSION No information KEYWORDS No information. SOURCE Prevotella nigrescens str. Lambe 729-74 NCTC 9336. ORGANISM Prevotella nigrescens. REFERENCE 1 AUTHORS Gersdorf,H., Preisler,S., Choi,B.K. and Goebel,U. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 9336 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73963|g509071 NCTC 9336 = VPI 8944 = ATCC 33563 (T) biol_source= dental plaque (gingivitis) isolate_name= Lambe 729-74 BASE COUNT 338 a 357 c 452 g 301 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-UAC-A -GGC-UU--A ACAC-AUGCA A-GUCNRRGG 121 G--GA-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-UC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUC- CAA--CCU-G C-CCCU---U -ACUU-G-GG 421 -GAU-AC-CC C--------- ------GU-- U(-GAAA-)G -ACGG-C--C UAAUACC-CG 481 AU-GUG---- ---------- -------U-U UC-A--U-UG ---ACG-(-- --------GC 541 AU-------- -)-CCG---A UA-UG----A AA-CCAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----C--C- G--GUA---- 661 ----AGGG-- AUG---G-|G GAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAY-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GYA A)-GUC-UGA ACCA|-GCCA AGUA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GU 1021 --GG-GAA-- UA-AAGU-GG --CGC-A--( -----CGUG- ---------) --UG-CG-CC 1081 ---------- -------A-U U-GC-AUGU- A-CCU-C-AU G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUC-C-- 1201 AGG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C GUG---UUGU G-AAA-UU-U AG-GUG-C(- UC-A)A-CAU -UU-A-ACU- 1321 -UGCA-GCGC G-AAC-UGUC A-GACUU-GA GUA-----CA C-GC-AGCGC AGG-C|GGAA 1381 UU-CAUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-AUGAGG- AACU-CCGA- 1441 -U-C-GC(-G AA-G)GCAG- -CCUGCGG-- ---------- ---------- ---------G 1501 AGU--GU-UA CUGACG-CUU AA-G------ -------CU- C-GAAG-GU- GC-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------C|G -CC-GU-UGG -CG------- ---------- 1681 -(-CC-C-)- ---------- ---------- ---------- ---------U -GCCUG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CA- UUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAU-UG|--- -------C-A ---GUCG--- -CA----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-CC-U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG-GA-C A-CU-G-CCA --CC(-G--C AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCCAA-U CUUG--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C-UGGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GU-GCCU -GAA-G-UUC 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGC-AAG ACC-GG-UG- AUU-GGGG-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prv.melan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prevotella melaninogenica.. ACCESSION No information KEYWORDS No information. SOURCE Prevotella melaninogenica. ORGANISM Prevotella melaninogenica. REFERENCE 1 AUTHORS Tiveljung,A.M. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82609|g886901 BASE COUNT 75 a 102 c 112 g 76 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG AAU-UG|--- -------C-A ---GUCG--- -CU----GCC 1981 -CAC-A--(- GAGA-)-CGU -G-GGCU--- U--------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGU-CU-GUG |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-C--U |-UU--CCC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGG--A-C A-CU-G-CCA --CC(-G--- AA)-GGU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAC-G-GC-C CUUAC-A-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGC-C-GG -UA--CAGAG GGA-C-G-G- UG-CAA-U(G 2881 -CAA)GUUG- ---------- CA-UCNAA-N UCUU--AAAU -CC-G-GUC- CCAGUUCGGA 2941 C--GGGGUC- (UGCAAC-C- C)-GACCCCA -CGAAGC-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2-CY 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2 CYTOPHAGA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2 CYTOPHAGA_GROUP. ORGANISM 2.7.1.2 CYTOPHAGA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. ORGANISM 2.7.1.2.1 MSC.AGGREGANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3811.. ACCESSION No information KEYWORDS No information. SOURCE clone 3811. ORGANISM clone 3811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89315 BASE COUNT 65 a 49 c 71 g 59 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|.....A C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G UU(U-UA-U- -G)AA-UUGU AAA--CUGC| UUUU-GU-AU 1021 --GG-GAA-- GA-AAUG-UU --UCU-A--( -----CGUG- ---------) --UA-GA-GA 1081 ---------- --------UU U-GC-CGGU- A-CC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.6911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 6911.. ACCESSION No information KEYWORDS No information. SOURCE clone 6911. ORGANISM clone 6911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89334 BASE COUNT 68 a 52 c 73 g 52 t 4131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-NAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--UUGC| UUUU-AU-UU 1021 --GG-GAA-- UA-AACC-UU --GGU-A--( -----UGUG- ---------) --UA-CC-AA 1081 ---------- -------G-C U-GAAUGUC- ACGCA-A-AC G-AA--UAAG CA........ 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla aggregans subsp. catalatica str. HI-3 ATCC 23190. ACCESSION No information KEYWORDS No information. SOURCE Microscilla aggregans subsp. catalatica str. HI-3 ATCC 23190. ORGANISM Microscilla aggregans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23190 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58791 isolate_name= HI-3 BASE COUNT 401 a 317 c 411 g 326 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UAUACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--UCU-A C-CUUA---U -ACUG-G-AG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U UC-A--G-AU ---ACU-(-- --------GC 541 AU-------- -)-AGU---A UU-UG----A CU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAAG-- AUG---A-|C UAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 N-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A A-GAA--U-G UC(C-UA-C- -G)GA-UUGU AAA--CUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AACC-UU --UCU-A--( -----CGUG- ---------) --UA-GA-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCA-A-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNNNN-A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- UCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-C UA-CAG-C(- UC-A)A-CUG -UA-G-AAU- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AA G-UU-GGAGU AGG-C|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUN-- ---------- ---------- ---------A 1501 ACU--UA-UA UUGACG-CUC AU-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUCA U--UA-CU-- -------C|G -AU-AU-UGG -C-------- -G-------- 1681 -(AUA-UA)C G--------- ---------- ---------- ---------- -GUCAG-UGU 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU G|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGA 1981 -UUU-G--(- GAAA-)-CAA -G-UCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-AA-A A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CNUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGC-A-G-C- UA-CUG-G(G 2881 -UGA)CCAG- ---------- AU-GCUAA-U CUCA--AAAA -CU-C-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--NC-UAG- GG-GU-GCCU -GAA-G-UCU 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5811.. ACCESSION No information KEYWORDS No information. SOURCE clone 5811. ORGANISM clone 5811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89328 (bases 26 to 238) BASE COUNT 57 a 47 c 63 g 44 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UGA ACCA|-GCCA UACC-GC-GU 961 G-C-AC-C-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACCC-UG --AUU-A--( -----CGUG- ---------) --UA-AU-CA 1081 ---------- -------G-N U-GA-CGGN- A-CCA-A-UC G-AA--UAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. ORGANISM 2.7.1.2.2 CHRYSEOBACTERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Emb.brevis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Empedobacter brevis. ACCESSION No information KEYWORDS No information. SOURCE Empedobacter brevis. ORGANISM Empedobacter brevis. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14022|g1160326 Former RDP Sids: F.breve2 NB: former name Flavobacterium breve BASE COUNT 335 a 255 c 356 g 303 t 3127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ...CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUA---C -UGAA-A-AG 421 -GAU-AG-CC C--------- ------UU-- C(-GAAA-)G -GAGG-U--A UNAUACU-UU 481 AU-AAC---- ---------- -------A-G AU-U--G-A- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AA----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CAG---- 661 ----UAGG-- AUA---G-|G CAUGC----- -GU|----AA G--AUUA-G- UUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-AG-G-U C-GAC--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CUC-N--( -----CGUG- ---------) --UG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAUC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UU- 1261 A-AU-CAG|U CAG---UGGU G-AAA-UC-C CG-CAG-C(- UU-A)A-CUG -UG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA GUG-----AU G-UU-GAAGU GGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACGCAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUA--UC-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GG-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------UC -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UU- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGA 1981 -UCU-A--(- GAAA-)-UAG -A-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UN ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-N NG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AG -UA--CAGAG GGC-A-G-C- UA-CUU-G(G 2881 -CAA)CAAG- ---------- AU-GCGAA-U CUCG--AAAA -CU-U-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Emb.brevi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Empedobacter brevis. ACCESSION No information KEYWORDS No information. SOURCE Empedobacter brevis. ORGANISM Empedobacter brevis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59052 Former RDP Sids: F.breve NB: former name Flavobacterium breve BASE COUNT 403 a 296 c 422 g 344 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NCAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-UU--A ACAC-AUGCA A-GCC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUA---C -UGAA-A-AG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACU-UU 481 AU-AAU---- ---------- -------A-G AC-U--G-A- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AG----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CAG---- 661 ----UAGG-- AUA---G-|G CAUGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-GA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CUU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 G-AU-CNG|U CAG---UGGU G-AAA-UC-C UA-UCG-C(- UU-A)A-CGA -UA-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----AG U-UU-GAAGU GGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACGCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GA-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GU -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UU- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----GUA 1981 -UUU-G--(- GAAA-)-CAG -A-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --AU(-G--A AA)-GUU-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AG -UA--CAGAG GGC-A-G-C- UA-CUG-G(G 2881 -UGA)CCAG- ---------- AU-GCGAA-U CUCG--AAAA -CU-U-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACN-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wee.virosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weeksella virosa. ACCESSION No information KEYWORDS No information. SOURCE Weeksella virosa. ORGANISM Weeksella virosa. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93152 ATCC 43766 = NCTC 11634 (T) BASE COUNT 393 a 291 c 423 g 347 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNCAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GAGU---AUC -GC-GUAUG- UAA--CUU-G C-CUUA---U -AGAA-U-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUACC-GU 481 AU-AUA---- ---------- -------A-A GC-U--A-G- ---GUG-(-- --------GC 541 AU-------- -)-CAU---- UU-AG----U UU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UAAG-- AUA---G-|A CAUGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(UAG C)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GU-GAA-- UA-AACC-UA --UCC-A--( -----CGAGY ---------) --UG-GA-UA 1081 ---------- -------G-U U-GA-AGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-C UA-UCG-C(- UU-A)A-CGA -UA-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUU G-AUCUA-GA AUU-----AG U-UU-GAAGU AGC-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACGCAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -CU-GU-UGG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -CUCAG-UGG 1741 UU--AA---- --GC-(GAA- ---A)G-UA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GN -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-Y-GG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -UGA)CUGG- ---------- AU-GCGAA-U CUCU--AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UUG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-AC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Orn.rhinot 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ornithobacterium rhinotracheale. ACCESSION No information KEYWORDS No information. SOURCE Ornithobacterium rhinotracheale. ORGANISM Ornithobacterium rhinotracheale. REFERENCE 1 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters ,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K., Falsen ,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L19156 BASE COUNT 376 a 290 c 413 g 320 t 2977 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUAA-UU (--UA----- ---------- ---------- 241 --------CG -)GA-UUAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CCUU---A -UCAG-G-AG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UNAUACU-CC 481 AU-AAG---- ---------- -------A-U UU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CGA---- UU-NN----N AU-UGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GAU---- 661 ----AAGG-- AUA---G-|G CAUGC----- -GU|----CA G--AUUA-G- UUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CUACN-A A|-GGC-GA- UGA------- -----UC-UG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-N-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GGA A)-CUC-UGA UCCA|-GCCA UCCU-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NUUU-GU-AU 1021 --GG-GGA-- UN-AAUC-UA --CNU-A--( -----CGUG- ---------) --UA-GG-UA 1081 ---------- -------G-U U-GA-AGGU- A-CCA-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-N-C-GGAG |-NAUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-AU-AAG|U CAG---UNGU G-AAA-UU-U UG-UCG-C(- UC-A)A-CGA -UA-A-AAC- 1321 -UGCC-AUUN A-UAC-UGUU A-GUCUU-GA GUG-----AU A-UU-GAAGU AGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUA--UU-NA CUGACG-CUG AA-G------ -------GA- C-NAAA-GC- GU-NNG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--N 1621 AAC-G-AUGC U--NA-CU-- -------N|G -UN-UU-CGG -GG-N----- ---------- 1681 -(-NU-NA)- ---------- ---------- ---------- --------UC -UUCGG-AGA 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-GGU -UUNAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-U ---AAUG--- -AC----AGG 1981 -AGU-G--(- GAAA-)-CAN -N-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGU---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCA --AC(-G--C AA)-GUU-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -A-AGUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-A-G-C- UA-CCG-G(G 2881 -CGA)CUGG- ---------- AN-GCGAA-U CUCU--AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UY -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GN-NN-NCCU -NAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.menin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02896|g455039 Former RDP Sids: F.meningo2 ATCC 13253 = DSM 2800 = NCTC 10016 (T) NB: former name Flavobacterium meningosepticum BASE COUNT 76 a 79 c 86 g 62 t 4073 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... UG-ACG--UC -N-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 CNACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-AGGG-C 3301 U---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.menin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14018|g1711221 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 336 a 258 c 355 g 297 t 3130 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-N C-CUUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUUCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--A-A- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-NGGU ----GA-U-- CCN-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU NAA--CUNC| UUUU-AU-CU 1021 --GG-GGA-- UN-AACC-UN --CUU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-C GA-CAG-C(- UU-A)A-CUG -UC-G-AAC- 1321 -UGCC-AUUG A-UUC-UGCU A-GUCUU-GA GUA-----AG G-UU-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-UU-UGG -GU-U----- ---------- 1681 -(-UU-AU)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-GGA AAU-GG|--- -------G-A ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-UCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC NACCC-CU-G |-UC--ACU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C UA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCNNC-U- U)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.mening 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium meningosepticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium meningosepticum. ORGANISM Chryseobacterium meningosepticum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58776 Former RDP Sids: F.meningos ATCC 13253 = DSM 2800 = NCTC 10016 (T) NB: former name Flavobacterium meningosepticum BASE COUNT 345 a 267 c 369 g 281 t 3114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .....G-(-- --------GC 541 AU-------- -)-CAG---- UU-NA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-N A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GGA A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-CU 1021 --GG-GGA-- UA-AACC-UA --CNU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-CU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-C GA-CAG-C(- UU-A)A-CUG -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGCU N-GUCUU-GA GUA-----AG G-UU-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------A 1501 GUC--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -UU-UU-UGG -GU-U----- ---------- 1681 -(-UN-AU)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGA 1981 -UUU-A--(- GAAA-)-UAG -A-NCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---N(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-ANU-GA-G A-CU-G-CNN --NC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UAG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.balus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium balustinum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium balustinum. ORGANISM Chryseobacterium balustinum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14016|g1711219 IFO 15053 = NCTC 11212 = ATCC 33487 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 334 a 251 c 354 g 289 t 3148 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CUUU---A -UCAG-G-GG 421 -GAU-AG-CC N--------- ------NU-- C(-GAAA-)G -GAAG-N--U UAAUNCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-N- ---NNG-(-- --------GC 541 AU-------- -)-CAG---- UN-NN----N AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUNCC-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----NA-U-- CCN-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UA --CUC-N--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCNNC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-AG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -CGA)CUGG- ---------- AU-GCGAA-U CUCG--AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUNC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.balust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium balustinum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium balustinum. ORGANISM Chryseobacterium balustinum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58771 Former RDP Sids: F.balustin ATCC 33487 (T) = IFO 15053 = NCTC 11212 NB: former name Flavobacterium balustinum BASE COUNT 396 a 298 c 415 g 333 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- UC-GA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UN --CUC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC GNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-AG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|N|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CNU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- UA-CCA-G(G 2881 -CGA)CUGG- ---------- AU-GCGAA-U CUCG--AAAG -CU-N-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-UUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-AG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indthe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indoltheticum. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indoltheticum. ORGANISM Chryseobacterium indoltheticum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58774 Former RDP Sids: F.indolthe ATCC 27950 = NCIMB 2220 (T) NB: former name Flavobacterium indoltheticum BASE COUNT 386 a 297 c 416 g 332 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AA-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AU----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GUC-AG- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UU --UCC-A--( -----CGUG- ---------) --UG-GA-AA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCN-GUG( CCA--GCAGC NNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-UAG-C(- UU-A)A-CUA -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUA-----AA G-UA-GAAGU GGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCNA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCAUCA-- ---------- ---------- ---------U 1501 GUU--UU-AA CUGACG-CUG AU-G------ -------GN- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------N|G -UU-UU-UGG -GN-U----- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|N|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CNU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCGAA-U CUCG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -NA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-NAA ACA-AG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1044 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1044. str. SBR1044. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1044. str. SBR1044. ORGANISM str. SBR1044. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84487|g871608 isolate_name= SBR1044 BASE COUNT 102 a 85 c 124 g 83 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGG-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---ACG-(-- --------GC 541 AU-------- -)-CGU---- UU-GA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GNC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2024 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2024. str. SBR2024. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2024. str. SBR2024. ORGANISM str. SBR2024. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84566|g871687 isolate_name= SBR2024 BASE COUNT 102 a 83 c 121 g 84 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGN-CU--N ACNN-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAA---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2091 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2091. str. SBR2091. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2091. str. SBR2091. ORGANISM str. SBR2091. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84621|g871742 isolate_name= SBR2091 BASE COUNT 102 a 85 c 120 g 85 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGNC-GGN-A -GGN-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAA---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-G C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2072 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2072. str. SBR2072. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2072. str. SBR2072. ORGANISM str. SBR2072. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84604|g871725 isolate_name= SBR2072 BASE COUNT 103 a 86 c 120 g 84 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGG-A -GGC-UN--A CCAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-A C-CUCU---A -UCUG-G-AG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACU-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAG---- UU-GA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AAAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-NCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GU-(GCA A)-GCC-UGA ACCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rie.anatip 4376 bp RNA RNA 02-JUL-1998 DEFINITION Riemerella anatipestifer.. ACCESSION No information KEYWORDS No information. SOURCE Riemerella anatipestifer. ORGANISM Riemerella anatipestifer. REFERENCE 1 AUTHORS Ban,H.-K.K. and Chua,K.-L. TITLE Analysis of partial 16S ribosomal DNA sequences places Pasteurella anatipestifer within the Cytophaga-Flavobacterium complex JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13737 Former RDP Sids: Pas.anatip NB: former name Pasteurella anatipestifer BASE COUNT 127 a 102 c 140 g 104 t 3903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUA-UC (--UC----- ---------- ---------- 241 --------CG -)GA-UACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CUUU---A -UCAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U AC-U--G-A- ---UUG-(-- --------GN 541 AU-------- -)-CAA---- UU-AG----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GUG(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GU-UUGU AAA--CUUC| UUUU-GG-UC 1021 --AG-GGA-- UA-AACC-UA --CUC-U--( -----CGUG- ---------) --AG-GG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUG-U-AC G-AU--UAAG ---------C 1141 -ACCCGUU-A ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brg.zoohel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bergeyella zoohelcum. ACCESSION No information KEYWORDS No information. SOURCE Bergeyella zoohelcum. ORGANISM Bergeyella zoohelcum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93153 Former RDP Sids: Wee.zoohel ATCC 43767 = NCTC 11660 (T) NB: former name Weeksella zoohelcum BASE COUNT 386 a 298 c 427 g 334 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- --------UU GUUGGUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AACUA ACAA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUGUG- CAA--CCN-G C-NNNU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---UUG-(-- --------GC 541 AU-------- -)-CAG---- UU-AA----U AU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-UAA--G-G AC(C-UA-U- -G)GU-UUGU AAA--CUUC| UUUU-AU-AC 1021 --AG-GGA-- UA-AACC-UA --CUC-U--( -----CGUG- ---------) --AG-GG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUG-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-UC- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C UG-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCC-GUUG A-UAC-UGUC G-GUCUU-GA GUG-----UA U-UU-GAGGU AGC-U|GGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GNUACCA-- ---------- ---------- ---------A 1501 GUU--AC-AA CUGACG-CUG AU-G------ -------GA- C-NNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GG-U----- ---------- 1681 -(AUU-AU)- ---------- ---------- ---------- --------AC -UUCAG-AGA 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-AC-UUA AAU-GG|--- -------G-A ---AUUG--- -AC----AGC 1981 -UGU-A--(- GAAA-)-UAC -G-GNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(NUAA -GU)-CCUGN AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NUUAC-G-UC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-U(G 2881 -CGA)AGUG- ---------- AU-GCGAA-U CUCG--AAAG -CC-G-NNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GU-CUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indlog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indologenes. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indologenes. ORGANISM Chryseobacterium indologenes. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58773 Former RDP Sids: F.indologe ATCC 29897 = RM 542 = GIFU 1347 = CDC 3716 (T) = NCTC 10796 NB: former name Flavobacterium indologenes BASE COUNT 384 a 306 c 420 g 325 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNNU---A -UCUG-G-GG 421 -GAU-AG-CC U--------- ------NU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U GU-U--G-G- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UC-GA----C AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UG --CNC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-NUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGN-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGG 1981 -UUU-A--(- GAAA-)-UAG -A-CNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCAAA-U CUCG--AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-CUG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGU-AAA ACA-GG-UA- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.gleum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium gleum str. F93 ATCC 35910. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium gleum str. F93 ATCC 35910. ORGANISM Chryseobacterium gleum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35910 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58772 Former RDP Sids: F.gleum ATCC 35910 = NCTC 11432 (T) = IFO 15054 isolate_name= F93 NB: former name Flavobacterium gleum BASE COUNT 385 a 303 c 416 g 324 t 2948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-CU--A ACAC-AUGCA A-GCU-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GCGG---AAC -AC-GUGUG- CAA--CCU-G C-CNUU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------NU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CN 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GUC-UN- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GCG A)-GCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GU-AU 1021 --AG-GGA-- UN-AACC-UN --CUC-U--( -----CGUG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC U--AA-CU-- -------C|G -UU-UU-UGG -GY-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GR -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AAUG--- -AC----AGG 1981 -CUU-A--(- GAAA-)-UAG -G-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-N-(UNAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 C-ACA-CA-C GUA--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-CAC-U(G 2881 -CGA)AGUG- ---------- AU-GCAAA-U CUCG--AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-CUN- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GC-CU A-GGGN-AAA ACA-GG-UA- ACN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.gleum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium gleum.. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium gleum. ORGANISM Chryseobacterium gleum. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and Flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67852|g887435 Former RDP Sids: F.gleum2 NB: former name Flavobacterium gleum BASE COUNT 189 a 130 c 195 g 150 t 3712 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- UU-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAA-- AUG---G-|G AACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GCG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csb.indlo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chryseobacterium indologenes.. ACCESSION No information KEYWORDS No information. SOURCE Chryseobacterium indologenes. ORGANISM Chryseobacterium indologenes. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67848|g887436 Former RDP Sids: F.indolog2 NB: former name Flavobacterium indologenes BASE COUNT 186 a 130 c 198 g 149 t 3713 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U GU-U--G-G- ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UC-GA----C AU-UGAAA-- ----C----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.progurii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium paraogurii.. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium paraogurii. ORGANISM Flavobacterium paraogurii. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67850|g887438 BASE COUNT 188 a 130 c 197 g 150 t 3711 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GGAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AU-U--U-A- ---UCG-(-- --------GC 541 AU-------- -)-CGA---- UG-AA----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AAA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UGA UCCA|-GCCA U......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCA-A---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGGUGGA.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.ogurii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium ogurii.. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium ogurii. ORGANISM Flavobacterium ogurii. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67849|g887437 BASE COUNT 219 a 148 c 222 g 177 t 3610 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUCCC-CC 481 AU-AAU---- ---------- -------A-U AA-G--A-A- ---ACG-(-- --------GC 541 AU-------- -)-CGU---- UU-UU----U AU-UGAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAU---- 661 ----AGAG-- AUG---G-|G CACGC----- -GC|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGN ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GU-(GAG A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AU 1021 --AG-GGA-- UA-AACC-UN --NNN-U--( -----NGUG- ---------) --AG-GG-NA 1081 ---------- -------G-C U-GA-AGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A AC.......( .......... ........A) U-A-C-GGAG |-GGUG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-A-AAC- 1321 -UGCC-AUUG A-UAC-UGCA A-GUCUU-GA GUG-----UU G-UU-GAAGU AGC-U|GGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GCA--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------C|G -UU-UU-UGG -CC-U----- ---------- 1681 -(-UU-UA)A ---------- ---------- ---------- --------GA -UUCAG-AGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GCU-U---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. ORGANISM 2.7.1.2.3 BLATTABACTERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75625|g516193 endosymbiont_of= Periplaneta americana BASE COUNT 413 a 275 c 409 g 345 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GU-- UAGC-GGC-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAGGUCU-AU (--AU----- ---------- ---------- 241 --------UU -)UU-AGAUU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CUU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUAUU-CU 481 AU-AAC---- ---------- -------A-U AG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAUA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUA---G-|G CGUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACA-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CGGC| UUUU-GU-AU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGAGA ---------) --UA-AG-AA 1081 ---------- -------U-C AUGA-AGGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AGCUG-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------A -UUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------G-C ---UGCG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUCUUG-C- UA-CUG-G(G 2881 -UAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCRCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75624|g516144 endosymbiont_of= Periplaneta australasiae BASE COUNT 417 a 274 c 404 g 344 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GANC-GU-- UNGN-GGN-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGAUCU-AU (--GU----- ---------- ---------- 241 --------UA -)UU-AGAUC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAU -AC-GUACG- UAA--CUU-U C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AAU---- ---------- -------A-U AG-U--A-UU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUA---G-|G CGUAC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACA-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGAGA ---------) --UA-AG-AA 1081 ---------- -------U-C GUGA-AAGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AGCUA-GA GUG-----AG A-UU-GGAGU AAC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------A -UUCAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UGCG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUCUUG-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35664|g790979 BASE COUNT 426 a 275 c 396 g 347 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GU-- UAGC-GGC-G -GGN-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUUU-AU (--UU----- ---------- ---------- 241 --------AU -)UU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- UAA--CCU-A C-CUUU---U -UCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AAU---- ---------- -------A-C AG-U--A-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A AU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GAA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -G-|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --UCU-A--( -----CGUGA ---------) --UA-AA-AA 1081 ---------- -------U-U CUGA-AGGU- A-CUA-G-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UA-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AAUG A-UAC-UGAU A-GACUU-GA GUU-----AG A-UU-GGAGU AAC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-ACACAG- AACA-CCGA- 1441 -U-C-NC(-N AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ---GGGUAGG UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UC-GU-UGG -AU------- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- ---------A -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AA-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-A(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GA-UU A-AGGU-AAA AUC-GA-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Mastda 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35665|g791070 endosymbiont_of= Mastotermes darwiniensis BASE COUNT 413 a 276 c 407 g 350 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GN-- UAGC-GGC-G -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GGAAUCU-UC (--UAU---- ---------- ---------- 241 --------UA -)GA-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -GAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUAUU-CU 481 AU-AAU---- ---------- -------A-U GG-A--A-UC ---CUC-(-- --------GC 541 AU-------- -)-GAG---G AU-UC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ----AAU--- ---)------ ---------| -----G--U- G--GCA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UC-AG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCUA CGUC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- U--AAAG-AU --UUC-UA-( -----CGUGA ---------) -UAG-AG-AU 1081 ---------- -------U-U U-GA-AGGU- A-CUA-G-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-GG-U UG-CAG-C(- UU-A)A-CUG UUA-A-UAG- 1321 -UGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AAU-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -AUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -AU------- ---------- 1681 -(UUU-GC)- ---------- ---------- ---------- ---------A -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-A-G-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCGAA-U CUCUA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA AUC-GG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75626|g515323 endosymbiont_of= Blattella germanica BASE COUNT 418 a 280 c 405 g 350 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUCU-AU (---U----- ---------- ---------- 241 --------AU -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -GAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUAUU-CU 481 AU-AAU---- ---------- -------A-U AGAU--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AC----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AGAG-- AUG---G-|G CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GAC-AA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U AUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -UGCU-AUUG A-UAC-UGGU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-UU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-A(G 2881 -UAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GU-ACCU -GAA-A-UUG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-AGGU-AAA AUC-GA-UA- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Sironi,M., Damiani,G., Magrassi,L., Nalepa,C.A., Laudani,U. and Sacchi,L. TITLE The establishment of intracellular symbiosis in an ancestor of cockroaches and termites JOURNAL Proc. R. Soc. Lond. B 259, 293-299 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35666|g790980 BASE COUNT 414 a 274 c 397 g 342 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAAUCU-AU (--GC----- ---------- ---------- 241 --------AA -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UCGG-A--U UAAUGUU-CU 481 AU-AGC---- ---------- -------A-U AA-U--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GCA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UG--C- G--GCA---- 661 ----AAAG-- AUG---G-|A CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U AUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-AACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ---GGGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- ---------U -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UC-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-A-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGG-U-G-C- UA-CUG-G(G 2881 -UGA)UCAG- ---------- AU-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -AAA-A-UCG 3121 G-U------- -GA-CU---- ---------- ---------- -----(---- GUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GC-UU A-AGGU-AAA AUC-GG-UA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75623|g515324 endosymbiont_of= Pycnoscelus surinamensis BASE COUNT 405 a 267 c 392 g 336 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GN-- UNGC-GGC-G -GGC-UU--A ACNC-NUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAAAUCU-AU (--GU----- ---------- ---------- 241 --------AA -)AU-AGAUU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUGUU-CU 481 AU-AGU---- ---------- -------A-U AA-U--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GUA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UA--C- G--GCA---- 661 ----AAAG-- AUG---G-|G CGUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UC-AG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CNNN-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-N- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- U......... .........( .......... ......---) ......A-AU 1081 ---------- -------U-G U-GA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UG-U UG-NAG-C(- UU-A)A-CUG UUA-A-AAN- 1321 -UGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|RGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GNUACUA-- ---------- ---------- ---------A 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUNA-G AUAC)-CCU- ----GGUA-G UC----CAN- G-CC-CU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -CUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-G(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -GAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-AGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blt.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blattabacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Blattabacterium sp. ORGANISM Blattabacterium sp. REFERENCE 1 AUTHORS Bandi,C., Damiani,G., Magrassi,L., Grigolo,A., Fani,R. and Sacchi,L. TITLE Flavobacteria as intracellular symbionts in cockroaches JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 257, 43-48 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75622|g516264 endosymbiont_of= Nauphoeta cinerea BASE COUNT 415 a 273 c 401 g 350 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GN-- UAGC-GGC-N -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAUCUA-UA (--UU----- ---------- ---------- 241 --------A- -)UA-UAGAU UUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -AC-GUACG- UAA--CCU-A C-CUUU---U -GCUA-G-AA 421 -AAU-AG-CC U--------- ------GA-- G(-GAAA-)C -UUGG-A--U UAAUGUU-CU 481 AU-AGU---- ---------- -------A-U AA-U--G-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-AU----U AU--UAAA-- ---GUA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UA--C- G--GCA---- 661 ----AAAG-- AUG---G-|G CGUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UU 1021 --AG-GAA-- UA-AAAA-UU --CUU-A--( -----CGUGA ---------) --UA-AG-AA 1081 ---------- -------U-U GUGA-AUGU- A-CUA-U-AC G-AA--UAAG ---------U 1141 -GUCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GACA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---UAGU G-AAA-UA-U UG-CAG-C(- UU-A)A-CUG UUA-A-AAU- 1321 -GGCU-AUUG A-UAC-UGAU A-GACUU-GA GUG-----AG A-UU-GGAGU AGC-U|GGAA 1381 UG-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-ACACAG- AACA-CCGA- 1441 -U-C-GC(-G AA-A)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 AUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -UU-GU-UGG -A-------- ---------- 1681 -(UUU-AU)- ---------- ---------- ---------- ---------- -UUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GU|--- -------A-C ---UACG--- -AA----UAA 1981 -GCU-A--(- GAAA-)-UAG -U-UUAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGG-AG-UAC |---A|A--G 2161 AU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUUC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --AC(-G--U AA)-GUC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-U CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGUUU-G-C- UA-CUG-A(G 2881 -CAA)UCAG- ---------- AA-GCUAA-U CUCUA-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-GG-ACCU -AAA-A-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- AUUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-UU A-GGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2026 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2026. str. SBR2026. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2026. str. SBR2026. ORGANISM str. SBR2026. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84568|g871689 isolate_name= SBR2026 BASE COUNT 100 a 96 c 130 g 72 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-UU--G ACNC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GC---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- GCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- GAA--UCU-G C-CCUG---U -ACUG-G-AA 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--C UAAUAUC-CC 481 AU-AAU---- ---------- ---------A GC-C--G-AG ---GUG-(-- --------GC 541 AU-------- -)-CAC---C UU-GG----U UU--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|C CAUGC----- -GC|----AC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-GU 781 U-AG-G-GG| -G-GCU--(G -AGA)-GGGU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-AG-(GGA A)-CUC-UGA CGCA|-GNCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CG(C-UA-C- -G)CG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.311 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 311.. ACCESSION No information KEYWORDS No information. SOURCE clone 311. ORGANISM clone 311. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89310 BASE COUNT 51 a 42 c 70 g 39 t 4174 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ........GU 781 UUAG-G-GG| -G-CCU--(G -GAG)-AGGG ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA--A-C -CG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA----U GC(C-UA-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GA-GAA-- GA-ACCG--G --GGN-A--( -----CGUG- ---------) --U---C-GG 1081 ---------- ------GGGG U-GA-CGGU- A-UCA-U-AU A-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. ORGANISM 2.7.1.2.4 MY.ODORATUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS My.odoratu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myroides odoratus. ACCESSION No information KEYWORDS No information. SOURCE Myroides odoratus. ORGANISM Myroides odoratus. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58777 Former RDP Sids: F.odoratum ATCC 4651 (T) = NCTC 11036 = LMG 1233 = DSM 2801 NB: former name Flavobacterium odoratum BASE COUNT 397 a 290 c 410 g 346 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCN-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-N C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUGCU-CC 481 AU-GGU---- ---------- -------U-U AU-A--U-GA ---AUG-(-- --------GC 541 AU-------- -)-CGU---U UR-UA----U AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----AU C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GG-GAA-- GA-AAUG-UA --AUU-A--( -----CGUG- ---------) --UA-AU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UCG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -CUGAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UNA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NNUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-GCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-CNG- GN-GU-ACCU -GAA-G-UCG 3121 G-U------- -CG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS My.odorat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myroides odoratus. ACCESSION No information KEYWORDS No information. SOURCE Myroides odoratus. ORGANISM Myroides odoratus. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14019|g1711222 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 352 a 247 c 348 g 318 t 3111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-.U----- ---------- ---------- 241 --------UG -)CU-UUNCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCU-NCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-N C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUNCU-CC 481 AU-GGU---- ---------- -------U-U AU-A--U-GA ---AUG-(-- --------GC 541 AU-------- -)-NGU---U UN-UA----U AA--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----AU C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-UC 1021 --GG-GAA-- GA-AAUG-UA --AUU-A--( -----CGUG- ---------) --UA-AU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UCG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -NC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CNNN--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AACC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-UCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.22a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 22a.. ACCESSION No information KEYWORDS No information. SOURCE clone 22a. ORGANISM clone 22a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89282 BASE COUNT 56 a 46 c 60 g 43 t 4171 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 U-AG-G-GG| -G-CCU--(G -AGA)-CGGU ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAA-- GAAAACU-UA --UCU-A--( -----CGUG- ---------) --UA-GA-UA 1081 ---------- -------A-C U-GA-CGGU- A-CCA-U-AC G-C....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.5 F.FLEVENSE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.5 F.FLEVENSE_SUBGROUP. ORGANISM 2.7.1.2.5 F.FLEVENSE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD36 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26223|g498425 library_source= unidentified soil bacterium from paddy field BASE COUNT 69 a 71 c 80 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUU-C(G 2881 -CAA)GGAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2106 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2106. str. SBR2106. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2106. str. SBR2106. ORGANISM str. SBR2106. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84632|g871753 isolate_name= SBR2106 BASE COUNT 110 a 83 c 116 g 85 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U GU-A--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U UA-UA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-C AU(C-UA-U- -G)GU-GUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.aquatile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium aquatile. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium aquatile. ORGANISM Flavobacterium aquatile. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62797 ATCC 11947 = DSM 1132 BASE COUNT 417 a 317 c 424 g 336 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U UA-U--U-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --CCG-A--( -----CGUG- ---------) --UC-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AG G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-UC-U GG-UCG-C(- UC-A)A-CGA -UC-A-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU A-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UUA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGN-N -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -ACU-G--(- GAAA-)-CAG -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CAA)GCAG- ---------- GA-GCGAA-U CUAC--AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UNG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-NNA ACU-GG-UA- ACU-NGGG-C 3301 U---AAGNN- GUAA-CAAGG UAGCN-GUAC C(GGA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD64 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26251|g498456 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 72 c 81 g 56 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD38 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26225|g498427 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 71 c 84 g 57 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.columnar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium columnare. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium columnare. ORGANISM Flavobacterium columnare. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12659|g425718 Former RDP Sids: Cy.columna NCIMB 2248 = ATCC 23463 NB: former name Cytophaga columnaris BASE COUNT 334 a 259 c 346 g 281 t 3156 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUG---U -ACNG-G-GN 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U UU-U--C-AU ---AUN-(-- --------GC 541 CU-------- -)-CAU---U UG-AU----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----CAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-NN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AU- C-A---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACN-CN --NNC-U--( -----UGUA- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A GCUCC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GGAG |-UAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CAG---UGGU N-AAA-UC-U GG-UCG-C(- UC-A)A-CGA -UC-A-AAC- 1321 -GGCC-AUUG A-UAC-UGUA A-GACUU-GA AUU-----AC U-UG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 GAG--UA-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-AG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 U-CCUUA-CC AAG-GC-UUA AAU-GG|--- -------G-A ---AACG--- -AC----AGA 1981 -UUU-G--(- GAAA-)-CAN -A-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGA-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC NACCC-CU-G |-UU--GCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAG AGC-A-G-C- CU-CUA-C(G 2881 -CAA)GUAG- ---------- GA-GCGAA-U CUAC--ANAA -CC-N-NUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCANC-U- U)-GACUCCG -UGAAGC-UU -GAUU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.succini2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium succinicans. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium succinicans. ORGANISM Flavobacterium succinicans. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12673|g425734 Former RDP Sids: Cy.succin2 NB: former name Cytophaga succinicans BASE COUNT 333 a 259 c 352 g 286 t 3146 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------UG-- U(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U GU-G--A-GA ---AUG-(-- --------NC 541 AU-------- -)-CAU---U UU-CA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AU- CNA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AU- C-N---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --CNC-N--( -----NGUG- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AUCCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUUC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CU-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAC--AAAG -CC-N-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- N)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.succinic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium succinicans. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium succinicans. ORGANISM Flavobacterium succinicans. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Former RDP Sids: Cy.succini NB: former name Cytophaga "succinicans" BASE COUNT 393 a 312 c 427 g 315 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U GU-G--A-GA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-CA----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --CCC-U--( -----CGUG- ---------) --AG-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNUN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAC--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.psychro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium psychrophilum. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium psychrophilum. ORGANISM Flavobacterium psychrophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12670|g425729 Former RDP Sids: Cy.psychr3 NCIMB 1947 = DSM 3660 (T) NB: former name Cytophaga psychrophila BASE COUNT 347 a 256 c 341 g 286 t 3146 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-NAAA-)U -UUGN-A--U UAAUACC-UN 481 AU-AGU---- ---------- -------A-U AG-U--N-AG ---UUG-(-- --------GC 541 AU-------- -)-CAA---C AC-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GC-AU 1021 --AG-GAA-- GA-AACA-CU --NNC-U--( -----CGUG- ---------) --AG-GU-AN 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-GA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GC-CA- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGA -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU U-GGCUU-GA AUU-----AU U-UG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 AAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- N-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-CUUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AGC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUA-C(G 2881 -CAA)GUAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.hydatis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium hydatis. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium hydatis. ORGANISM Flavobacterium hydatis. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12656|g425715 Former RDP Sids: Cy.aquati2 NB: former name Cytophaga aquatilis BASE COUNT 350 a 260 c 348 g 282 t 3136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U AG-C--A-GG C--AUG-(-- --------GC 541 AU-------- -)GCAA---C CA-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -NU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --GGU-U--( -----CGUG- ---------) --AA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUUC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-NC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-UCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-G-NNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- U)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.hydatis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium hydatis. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium hydatis. ORGANISM Flavobacterium hydatis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-321 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58764 Former RDP Sids: Cy.aquatil ATCC 29551 = DSM 2063 = NCIMB 2215 (T) NB: former name Cytophaga aquatilis BASE COUNT 398 a 313 c 419 g 315 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAU-UC (--UU----- ---------- ---------- 241 --------CG -)GG-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U UG-C--A-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C CA-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| NUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --GGU-U--( -----CGUG- ---------) --AA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-NAA ACU-GG-UA- ACN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnsoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae str. MYX.1.1.1 ATCC 17061. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae str. MYX.1.1.1 ATCC 17061. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17061 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59051 Former RDP Sids: Cy.johns.a ATCC 17061 = DSM 2064 = NCIMB 11054 isolate_name= MYX.1.1.1 NB: former name Cytophaga johnsonae BASE COUNT 391 a 310 c 426 g 315 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UN 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GYG-(-- --------GC 541 AU-------- -)-CAC---U UU-RU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-CA- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CNG--NU-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter aurantiacus str. Lewin DWO ATCC 23107 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter aurantiacus str. Lewin DWO ATCC 23107 (T). ORGANISM Flexibacter aurantiacus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23107 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62792 isolate_name= Lewin DWO BASE COUNT 393 a 314 c 422 g 317 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CNUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CAG--NC-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 N-NA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnson3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12664|g425723 Former RDP Sids: Cy.johnso3 NB: former name Cytophaga johnsonae BASE COUNT 339 a 260 c 347 g 290 t 3140 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--A-GA ---GNG-(-- --------GC 541 AU-------- -)-CNC---U UU-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-CA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGU-C-UCC -(UACG)--G GAG-GC-AN- C-N---NU-G 901 UGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CN --CCU-A--( -----UGUA- ---------) --UA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCGGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AUC- 1321 -GGCC-AUUG A-UAC-UGCU G-AACUU-GA AUU-----AC U-GG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 CAG--UU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-N--CA-AU CGGUGG-ANC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GC|--- -------A-G ---ACUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAG-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.flevense 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium flevense. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium flevense. ORGANISM Flavobacterium flevense. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58767 Former RDP Sids: Cy.flevens ATCC 27944 (T) = DSM 1076 NB: former name Cytophaga flevensis BASE COUNT 391 a 309 c 413 g 313 t 2950 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U MK-C--R-YW ---RYY-(-- --------GC 541 AU-------- -)-GRY---W RM-RW----K AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --ACU-U--( -----CGUG- ---------) --AA-GU-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UC-U CC-CCG-C(- UC-A)A-CGG -GG-N-AAC- 1321 -UGCC-AUUG A-UAC-UGUA G-GACUU-GA AUA-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-CA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GG------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UNA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAC--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACN-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.flevens2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium flevense. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium flevense. ORGANISM Flavobacterium flevense. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12662|g425721 Former RDP Sids: Cy.fleven2 NB: former name Cytophaga flevensis BASE COUNT 339 a 261 c 347 g 285 t 3144 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -GCNG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUUCC-UN 481 AU-AGU---- ---------- -------A-U CN-C--G-UU ---GUU-(-- --------GC 541 AU-------- -)-GGN---N NA-GN----G AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GCA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -NU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --ACU-U--( -----CGUG- ---------) --AA-GU-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---UGGU G-AAA-UC-U CC-CCG-C(- UC-A)A-CGG -GG-N-AAC- 1321 -UGCC-AUUG A-UAC-UGUA G-GACUU-GA AUA-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-CA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UGG -GG------- ---------- 1681 -(-GC-AN)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAA-C---(G CAA)---G-U UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-U--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUN--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGN-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-UCGAA-U CUAC--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.spL431N 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga sp. str. L-43-1-N. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga sp. str. L-43-1-N. ORGANISM Cytophaga sp. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12675|g425733 isolate_name= L-43-1-N BASE COUNT 344 a 261 c 345 g 285 t 3141 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-U--U-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UA-AU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUG---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-A ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-U--( -----CGUG- ---------) --AA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU N-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(U CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-CCGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGN-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC ANCCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AU-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CNA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.pectinov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium pectinovorum str. Dorey 81 NCIMB 9059. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium pectinovorum str. Dorey 81 NCIMB 9059. ORGANISM Flavobacterium pectinovorum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12669|g425728 Former RDP Sids: Cy.pectino NCIMB 9059 = DSM 6368 (T) = ATCC 19366 isolate_name= Dorey 81 NB: former name Cytophaga pectinovora BASE COUNT 347 a 254 c 347 g 283 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------C-A UA-A--G-NN ---NNC-(-- --------GC 541 AU-------- -)-GAA---U CN-GC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GN|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----AG-GG 781 U-AG-G-GG| -N-NCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-A ACG)--GAUC -AGN-C-UCC -(UNCG)--G GAG-GU-AG- C-A---GU-G 901 AGG-AAUAUU G-GAAAAU-- GG-GC-(GCA A)-GCU-UGA UCCA|-GCCA UGCC-GC-GU 961 G-N-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACN-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCC N-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-UC-NN)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-NC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-N-NUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.sacchar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium saccharophilum str. VL31 NCIMB 2072. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium saccharophilum str. VL31 NCIMB 2072. ORGANISM Flavobacterium saccharophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12671|g425730 Former RDP Sids: Cy.saccha2 NCIMB 2072 = DSM 1811 (T) = ATCC 49530 (T) isolate_name= VL31 NB: former name Cytophaga saccharophila BASE COUNT 355 a 258 c 342 g 288 t 3133 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -NC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-C--G-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UG-GG 781 U-AG-G-GG| -N-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCNGUN-A) U-A-C-GGAG |-UAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|N-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AN-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(U 2881 -CGA)CCAG- ---------- GA-UCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.saccharo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium saccharophilum str. VL31 NCIMB 2072. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium saccharophilum str. VL31 NCIMB 2072. ORGANISM Flavobacterium saccharophilum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Former RDP Sids: Cy.sacchar NCIMB 2072 = DSM 1811 (T) = ATCC 49530 (T) isolate_name= VL31 NB: former name Cytophaga saccharophila BASE COUNT 404 a 308 c 415 g 321 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U UA-C--G-AA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GU----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --CCU-U--( -----CGUG- ---------) --AA-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGU 1981 -UUU-G--(- GAAA-)-CAG -A-ACUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAN--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.columna2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium columnare str. RR-1a ATCC 43622. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium columnare str. RR-1a ATCC 43622. ORGANISM Flavobacterium columnare. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43622 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58781 Former RDP Sids: Flx.column isolate_name= RR-1a NB: former name Flexibacter columnaris BASE COUNT 402 a 314 c 419 g 318 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AG-C--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-U--( -----CGUG- ---------) --AA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- NC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.johnson2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium johnsoniae. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium johnsoniae. ORGANISM Flavobacterium johnsoniae. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59053 Former RDP Sids: Cy.johns.d DSM 425 = NCIMB 10150 NB: former name Cytophaga johnsonae BASE COUNT 411 a 315 c 419 g 323 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCA-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AU-A--G-AC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G AU-UA----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-NN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GA-GAA-- GA-AACA-CU --GCU-A--( -----CGUG- ---------) --UA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACNGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----CGG 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spc.caulif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporocytophaga cauliformis. ACCESSION No information KEYWORDS No information. SOURCE Sporocytophaga cauliformis. ORGANISM Sporocytophaga cauliformis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93151 BASE COUNT 401 a 306 c 412 g 316 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGU---- ---------- -------A-U AG-U--G-AC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G AU-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACN-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| NUUU-GU-AC 1021 --GA-GAA-- GA-AACA-CU --CCA-A--( -----CGUG- ---------) --UU-GG-AG 1081 ---------- -------C-U U-GA-CGGU- A-UCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGCU N-AACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAN--- --NCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.ameridie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium ameridies. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium ameridies. ORGANISM Flavobacterium ameridies. REFERENCE 1 AUTHORS McCammon,S.A., Inness,B.H., Franzmann,P.D., Dobson,S.J., Holloway,P., Skerratt,J.H., Nichols,P.D., Mcmeekin,T.A. and Rankin,L.M. TITLE Flavobacterium ameridies sp. nov., a lactose utilising bacterium from a freshwater Antarctic lake JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39067|g632914 BASE COUNT 409 a 316 c 418 g 316 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 AU-AGC---- ---------- -------A-U AG-C--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G CC-AC----U AU--UAAA-- ---GU----- ---------- 601 --(------- ---CACA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-GU --UCU-A--( -----CGUG- ---------) --UA-GA-AC 1081 ---------- -------C-U U-GA-C-GU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C CA-UCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -NGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -AA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGNA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCUU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CA-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -CGA)CCAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.branchio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium branchiophilum str. 270 IFO 15030. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium branchiophilum str. 270 IFO 15030. ORGANISM Flavobacterium branchiophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14017|g1711220 isolate_name= 270 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 350 a 255 c 346 g 296 t 3129 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... ........UA CUAGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUUU---U -ACAU-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUNCC-UN 481 AU-AGU---- ---------- -------A-U GU-G--A-UN ---NUC-(-- --------GC 541 AU-------- -)-GGU---U UU-CN----C AU--UAAA-- ---GU----- ---------- 601 --(------- ---ACCA--- ---)------ ---------| -----A--C- G--GUA---- 661 ----AAAG-- AUG---A-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACN-A U|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-GU-AC 1021 --AG-GAA-- GA-AACA-CU --UCU-N--( -----CGAG- ---------) --UA-GA-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCNNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 UAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C NA-UCG-C(- UC-A)A-CGA -UG-G-AAC- 1321 -GGCC-AUUG A-UAC-UGUU A-GACUU-GA AUU-----AU U-AG-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------C 1501 UAA--UG-UA UUGACG-CUN AU-G------ -------GA- C-UAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-NGG -GG------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------C -UUCAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-U--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA AAU-GU|--- -------A-G ---UUUG--- -AC----CGA 1981 -UUU-G--(- GAAA-)-CAG -A-UCNU--- ---------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ---------| CAA-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG AGC-A-G-C- C--CUA-C(G 2881 -UGA)GUAG- ---------- GA-GCGAA-U CUAC--AAAA -CC-N-UUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.6 FLEXIBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.6 FLEXIBACTER_SUBGROUP. ORGANISM 2.7.1.2.6 FLEXIBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.26a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 26a.. ACCESSION No information KEYWORDS No information. SOURCE clone 26a. ORGANISM clone 26a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89283 BASE COUNT 56 a 45 c 69 g 39 t 4167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ......A-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-GUG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--N-G GC(C-UG-C- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACG-CC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------U-U U-GA-CGGU- A-CUG-U-A- G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.19a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 19a.. ACCESSION No information KEYWORDS No information. SOURCE clone 19a. ORGANISM clone 19a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89280 BASE COUNT 56 a 48 c 66 g 38 t 4168 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UA-GG 781 U-AG-G-GG| -C-CNU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GA-AG-(GGA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACA-CC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA G-AA...... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.12a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 12a.. ACCESSION No information KEYWORDS No information. SOURCE clone 12a. ORGANISM clone 12a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89274 BASE COUNT 58 a 48 c 66 g 40 t 4164 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UA-GG 781 U-AG-G-GG| -N-CCU--(G -AGA)-UGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GGA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACA-CC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.42a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 42a.. ACCESSION No information KEYWORDS No information. SOURCE clone 42a. ORGANISM clone 42a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89292 BASE COUNT 58 a 48 c 65 g 39 t 4166 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GGA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACA-CC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA N-AA--NAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.8511 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 8511.. ACCESSION No information KEYWORDS No information. SOURCE clone 8511. ORGANISM clone 8511. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89344 BASE COUNT 58 a 49 c 65 g 39 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UA-GG 781 U--G-G-GG| -U-CCU--(G -AGA)-GG-A ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACA-UC --GCU-A--( -----CGUG- ---------) --UA-GC-GA 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 811.. ACCESSION No information KEYWORDS No information. SOURCE clone 811. ORGANISM clone 811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89337 BASE COUNT 57 a 50 c 65 g 39 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|...C-AA- UGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GG-A ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACA-UC --GCU-A--( -----CGUG- ---------) --UA-GC-GA 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.marit4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter maritimus. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter maritimus. ORGANISM Flexibacter maritimus. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12667|g425726 Former RDP Sids: Cy.marina NB: former name Cytophaga marina BASE COUNT 343 a 255 c 342 g 300 t 3136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUA- GAA--UCU-G C-CUUC---U -ACAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUNCC-UC 481 AU-AAC---- ---------- -------A-C UU-U--G-GA ---AUG-(-- --------GC 541 AU-------- -)-CGU---U UU-AA----A GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----GAAG-- AUG---A-|C UAUGC----- -NU|----CC U--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-NA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UUA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACG-UA --CCU-N--( -----CGAG- ---------) --UA-GG-UA 1081 ---------- -------U-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-NGUC-C-- 1201 UAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-CAG-GC -G|-GU-CG- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-UAG-C(- UU-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUA-----AU A-CG-GAAGU AGA-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCUG- -UCUACUA-- ---------- ---------- ---------C 1501 GUA--UU-UA CUGGCG-CUC AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -UU-GU-UGG -GA------- ---------- 1681 -(-AA-UA)- ---------- ---------- ---------- ---------U -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-NGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------G-G ---AAUG--- -AC----AGG 1981 -GCU-A--(- GAGA-)-UAG -C-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-CAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-G--C AU)-ACC-GU -GAGG-A-UG 2761 G-UN-GGG-A UG-ACG--UU -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CUU)CAGA- ---------- GA-GCGAA-U CUAC--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.marit3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter maritimus str. 449 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter maritimus str. 449 (T). ORGANISM Flexibacter maritimus. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14023|g1160325 isolate_name= 449 (T) BASE COUNT 357 a 264 c 354 g 295 t 3106 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)CU-ACA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--UCU-G C-CUUC---U -ACAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUACC-UC 481 AU-AAC---- ---------- -------A-C UU-U--G-GA ---AUG-(-- --------GC 541 AU-------- -)-CGU---U UU-AA----A GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----GAAG-- AUG---A-|C UAUGC----- -GU|----CC U--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UNA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACG-UA --CCU-A--( -----CGAG- ---------) --UA-GG-UA 1081 ---------- -------U-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-GGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-CAG-GC -G|-GU-CG- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-UAG-C(- UU-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUA-----AU A-CG-GAAGU AGA-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UCUACUA-- ---------- ---------- ---------C 1501 GUA--UU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -UU-GU-UGG -GA------- ---------- 1681 -(-AA-UG)- ---------- ---------- ---------- ---------U -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------G-G ---AAUG--- -AC----AGG 1981 -GCU-A--(- GAGA-)-UAG -C-NNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-CAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -U-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAU)CAGA- ---------- GA-GCGAA-U CUAC--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.marit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter maritimus str. R2 ATCC 43398. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter maritimus str. R2 ATCC 43398. ORGANISM Flexibacter maritimus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43398 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64629 ATCC 43398 = NCIMB 2154 (T) isolate_name= R2 BASE COUNT 407 a 308 c 414 g 327 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--UCU-G C-CUUC---U -ACAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUACC-UC 481 AU-AAC---- ---------- -------A-C UU-U--G-GA ---AUG-(-- --------GC 541 AU-------- -)-CGU---U UU-AA----A GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----GAAG-- AUG---A-|C UAUGC----- -GU|----CC U--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACG-UA --CCU-A--( -----CGAG- ---------) --UA-GG-UA 1081 ---------- -------U-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-CAG-GC -G|-GU-CG- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-UAG-C(- UU-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUA-----AU A-CG-GAAGU AGA-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UCUACUA-- ---------- ---------- ---------C 1501 GUA--UU-UA CUGACG-CUC AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -UU-GU-UGG -GA------- ---------- 1681 -(-AA-UG)- ---------- ---------- ---------- ---------U -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUGUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------G-G ---AAUG--- -AC----AGG 1981 -GCU-A--(- GAGA-)-UAG -C-NUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-UU-CAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAC-G-GC-C CNUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAA)CAGA- ---------- GA-GCGAA-U CUAC--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-NGG- UU-GU-ACCU -GAA-G-UUG 3121 G-N------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.301 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 301. str. 301. ACCESSION No information KEYWORDS No information. SOURCE str. 301. str. 301. ORGANISM str. 301. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14586|g975739 isolate_name= 301 BASE COUNT 396 a 308 c 414 g 322 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -GAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U UG-C--U-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UA-GU----A CU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|C UAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AU- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C UCG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GAG A)-CUC-UGA CCCA|-GCCA UACC-GC-GU 961 G-U-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-GU --GGU-A--( -----UGUA- ---------) --UA-CC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUC( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-CAG-GC -G|-GU-CG- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UA-C CA-UAG-C(- UC-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUC-----AU A-UG-GAAGU AGA-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UCUACUA-- ---------- ---------- ---------C 1501 GUA--UG-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -UU-GU-UGG -GC------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------G -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UCUG--- -AC----AGC 1981 -UUU-A--(- GAGA-)-UAG -A-GUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAA)CAGA- ---------- GA-GCAAA-U CUAU--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-GCCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg50 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10947 library_source= marine snow associated BASE COUNT 355 a 268 c 367 g 291 t 3095 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 ......G-CC U--------- ------UU-- A(-GAAA-)U -GAAG----U UAAUACC-U- 481 AU-AGU---- ---------- -------A-U UG-C--G-AC ---UUG-(-- --------GN 541 AU-------- -)-CGA---G UG-UA----A -U--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- -UG---G-|C UAUGC----- -GU|----CC U--AUUA-G- UUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GAC-UA- UGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GCCGU 961 G-C-AG-G-A A-AGAC-G-G CC(C-UA-U- -G)GG--UGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --AGU-A--( -----YGG-- ---------) --UA-CU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- C-G-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-UAG-C(- UU-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUC-----AU A-UG-GAAGU AGA-U|AGAA 1381 UG--GUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UCUACUA-- ---------- ---------- ---------C 1501 GUA--UG-UA CUGACG-CUG AG-G------ -------GA- C-G-AA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -UU-GU-UGG -GC------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------G -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGG-GUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UAUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAAG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAA)CAGA- ---------- GA-GCGAA-U CUAU--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-GCCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flc.glomer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flectobacillus glomeratus. ACCESSION No information KEYWORDS No information. SOURCE Flectobacillus glomeratus. ORGANISM Flectobacillus glomeratus. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58775 ATCC 43844 = UQM 3055 (T) BASE COUNT 391 a 305 c 400 g 317 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------NN -)NN-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--CCU-N C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U UG-A--G-AC ---UUG-(-- --------GC 541 AU-------- -)-CAA---G UU-UN----A AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|C UAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UN-AG-( GU-AAC-GG) -C-UUACN-A A|-GAC-AU- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GAG A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --NNU-A--( -----UGUA- ---------) --UA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC C.......A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- NCG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C NG-UCG-C(- UC-A)A-CGA -CG-G-NAC- 1321 -UGCC-UNUG A-UAC-UGGU U-GACUU-GA GUC-----AU A-UG-GAAGU AGA-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UNAAA)-UGC -AU-AGAG-A UU-ACACAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -NCUACUA-- ---------- ---------- ---------C 1501 GUA--UG-UA CUGACG-CUC AU-G------ -------GA- C-NAAA-GC- GU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------N|G -UU-GU-UGG -GC------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------G -CUCAG-UGA 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UCUG--- -AC----AGC 1981 -UUU-A--(- GAGA-)-UAG -A-GUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CNU---- ---------- ---------- ---N(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NNUAC-G-UC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAA)CAGA- ---------- GA-GCAAA-U CUAU--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NNA-UGGA A--GC-UNN- GN-GU-ACCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-NAA ACU-GG-UA- ACN-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ant.vesicu 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Antarcticum vesiculatum" str. 23-P ATCC 49675. ACCESSION No information KEYWORDS No information. SOURCE "Antarcticum vesiculatum" str. 23-P ATCC 49675. ORGANISM "Antarcticum vesiculatum". REFERENCE 1 AUTHORS Bowen,A.R., Chen-Wu,J.L., Momany,M., Young,R., Szaniszlo,P.J. and Robbins,P.W. TITLE Classification of fungal chitin synthases JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 519-523 (1992) STANDARD No information REFERENCE 2 AUTHORS Irgens,R.L. and Woese,C.R. TITLE Antarcticum vesiculatum gen. nov., sp. nov., a gas-vaculoate, pigmented and aerobic rod from Antarctic marine waters JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49675 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61002 Former RDP Sids: Ves.antarc isolate_name= 23-P NB: former name Vesiculatum antarctica BASE COUNT 407 a 306 c 412 g 331 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U UG-A--G-AC ---UUG-(-- --------GC 541 AU-------- -)-CAA---G UU-UU----A AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|C UAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AU- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --GGU-A--( -----UGUA- ---------) --UA-CC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-GGUC-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CNG-CAG-GC -G|-GU-CU- 1261 A-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-UAG-C(- UC-A)A-CUA -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-GACUU-GA GUC-----AU A-UG-GAAGU GGA-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UCCACUA-- ---------- ---------- ---------C 1501 GUA--UG-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -UU-GU-UGG -GA------- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- ---------U -CUCAG-UGA 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UCUG--- -AC----AGC 1981 -UUU-A--(- GAGA-)-UAG -A-GUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--AUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAU-AA-G A-CU-G-CCA --GC(-G--C AA)-GCU-NC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-UG -GA--CAAUG AGC-A-G-C- CA-UCU-G(G 2881 -CAA)CAGA- ---------- GA-GCGAA-U CUAU--AAAC -CA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-UGG- GA-GU-GCCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.7 ENV.FL7_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.7 ENV.FL7_SUBGROUP. ORGANISM 2.7.1.2.7 ENV.FL7_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.14a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 14a.. ACCESSION No information KEYWORDS No information. SOURCE clone 14a. ORGANISM clone 14a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89276 BASE COUNT 61 a 47 c 62 g 43 t 4163 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|......U- AGA------- -----UA-G- 781 ---G-G-GU| -C-CCU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- GA-AACC-UU --GGU-A--( -----CGUG- ---------) --UA-CC-AA 1081 ---------- -------G-C U-GA-CGGU- A-CUA-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FL7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone FL7.. ACCESSION No information KEYWORDS No information. SOURCE clone FL7. ORGANISM clone FL7. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10937 BASE COUNT 350 a 272 c 377 g 292 t 3085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- A(-GAAA-)U -GAAG-A--U UAAUACC-UU 481 AU-AGU---- ---------- -------C-U AU-A--U-AU ---AUA-(-- --------GC 541 AU-------- -)-UAU---A UA-AA----U AG--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---A-|G UAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -N-CCU--(G -NGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A A-GAC--G-G -C(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- GA-AACC-UU --UUC-A--( -----CGUG- ---------) --UG-AG-AA 1081 ---------- -------G-C U-GA-CGGU- A-CUA-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-AA- 1261 U-CU-AAG|U CAG---UGGU G-AAA-UC-U UG-CAG-C(- UC-A)A-CUG -UA-A-AAU- 1321 -UGCC-AUUG A-UAC-UGGA U-UUCUU-GA AUU-----AG U-GU-GAAGU GGU-U|AGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 CAC--UA-UA UUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG U--CA-CU-- -------A|G -CU-GU-UUG -AC-CAAC-- ---------- 1681 -(-AU-UG)- ---------- ---------- GU-------- -------UGG -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UU- AUAA-GUGAC C|C|A-CCU- G-GGG-GUAC 1801 GCU-N---(G CAA)---G-A GU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-A ---GUUG--- -CA----UGG 1981 -ACC-A--(- GAGA-)-UGG -A-CCUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-CU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GN-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCGGA-U CUUC--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-GC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCA------ G-CU-GC-CU A-G....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.1911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 1911.. ACCESSION No information KEYWORDS No information. SOURCE clone 1911. ORGANISM clone 1911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89307 BASE COUNT 53 a 48 c 65 g 43 t 4167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .........A A|-GAC-UC- CGA------- -----UG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----UA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-GU 1021 --AG-GAA-- GA-AACC-UC --AGU-A--( -----CGUG- ---------) --UA-CU-GA 1081 ---------- -------G-C U-GA-CGGU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5911.. ACCESSION No information KEYWORDS No information. SOURCE clone 5911. ORGANISM clone 5911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89330 BASE COUNT 61 a 50 c 70 g 48 t 4147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) ......CC-A A|GGUCUUA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCUUA-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AG 1021 --AG-GAA-- GA-AACU-UG --UCU-A--( -----CGUG- ---------) --UA-GA-CA 1081 ---------- -------A-C U-GA-CGGU- A-CUC-U-AC G-AA--UAAG ---------G 1141 -A........ .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.6711 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 6711.. ACCESSION No information KEYWORDS No information. SOURCE clone 6711. ORGANISM clone 6711. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89332 BASE COUNT 57 a 49 c 66 g 42 t 4162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) ......CC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GAA A)--UC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AG 1021 --AG-GAA-- GA-AACU-UG --UCU-A--( -----CGUG- ---------) --UA-GA-CA 1081 ---------- -------A-C U-GA-CCGC- A-CUC..... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.8 CAPNOCYTOPHAGA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.8 CAPNOCYTOPHAGA_SUBGROUP. ORGANISM 2.7.1.2.8 CAPNOCYTOPHAGA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4711 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4711.. ACCESSION No information KEYWORDS No information. SOURCE clone 4711. ORGANISM clone 4711. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89320 BASE COUNT 59 a 54 c 75 g 53 t 4135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|.....C U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-A-C-GG) -C-UUACC-A A|-GCG-CA- UGA------- -----UA-GC 781 U-AG-G-GG| -G-NGU--(G -AGA)--GGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GAA A)-GAC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GUU-- GU-UCAC-CA --CCC-A--( -----CGUG- ---------) --UG-GG-UG 1081 ---------- -------A-C U-GA-CGGU- N-CCG-U... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.canimo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35979 (T) . ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga canimorsus str. CalHlthDept 2340-2-61 ATCC 35979 (T) . ORGANISM Capnocytophaga canimorsus. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information REFERENCE 2 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K. , Falsen,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35979 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14637 ATCC 35979 (T) = CDC 7120 geog_source= California biol_source= human blood after dog bite isolate_name= CalHlthDept 2340-2-61 NB: former name Capnocytophaga canimorus BASE COUNT 386 a 303 c 437 g 333 t 2917 others ORIGIN 1 .......... .......... .......... .UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-GC (--UU----- ---------- ---------- 241 --------CG -)GC-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGUA- CAA--UCU-A C-CUUU---U -GCUA-A-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UU 481 AU-AGU---- ---------- -------A-U UG-U--U-UG ---GUG-(-- --------GC 541 AU-------- -)-CAC---U GA-AU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--U- G--GCA---- 661 ----AAAG-- AUG---A-|G UACGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-GG 781 N-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GG --UCU-A--( -----CGAG- ---------) --UA-GA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 U-AU-AAG|U CAG---AGGU G-AAA-GC-A CU-NAG-C(- UC-A)A-CUG -AG-U-AAC- 1321 -UGCC-UUUG A-AAC-UGUA G-GUCUU-GA AUG-----UU U-GU-GAAGU AGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAU- -GUUACUA-- ---------- ---------- ---------A 1501 CAA--AU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA-A----- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------UU -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---AACG--- -AC----GUA 1981 -UCU-A--(- GAGA-)-UAG -A-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CU--GUU- 2281 AG--UUGC-U AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGCG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.cynode 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga cynodegmi. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga cynodegmi. ORGANISM Capnocytophaga cynodegmi. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information REFERENCE 2 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K. , Falsen,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14638 BASE COUNT 379 a 300 c 434 g 333 t 2930 others ORIGIN 1 .......... .......... .......... ...ACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACNC-AUGCN A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-GC (--UU----- ---------- ---------- 241 --------CG -)GC-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUGUA- CAA--UCU-A C-CUUU---U -GCUA-A-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UU 481 AU-AGU---- ---------- -------A-U UA-U--U-UG ---GUG-(-- --------GC 541 AU-------- -)-CAU---U AG-AU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GCA---- 661 ----AAAG-- AUG---A-|G UACGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACACC-A A|-GGC-UN- CGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-AU 1021 --GG-GAA-- GA-AUAA-GG --UCU-A--( -----CGUG- ---------) --UA-GA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UNAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 U-AU-AAG|U CAG---AGGU G-AAA-GC-A CU-NAG-C(- UC-A)A-CUG -AG-U-AAC- 1321 -UGCC-UUUG A-AAC-UGUA G-GUCUU-GA AUG-----UU U-GU-GAAGU AGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAU- -GUUACUA-- ---------- ---------- ---------A 1501 CAA--AU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA-A----- ---------- 1681 -(-GU-NA)- ---------- ---------- ---------- --------UU -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---AACG--- -AC----GUA 1981 -UCU-A--(- GAGA-)-UAG -A-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGU-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 AG-G-(UUNA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CU--GUU- 2281 AG--UUGC-U AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUNC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-C-GG -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -CC-G-GNC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga haemolytica. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga haemolytica. ORGANISM Capnocytophaga haemolytica. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41349 LMG 16021 (T) = JCM 8565 BASE COUNT 387 a 299 c 436 g 326 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGUA- CAA--UCU-A C-CUUU---U -ACUG-G-GG 421 -AAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUGCC-CC 481 AU-AGU---- ---------- -------A-U AG-C--A-CU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A GA-GY----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----AGAG-- AUG---A-|G UACGC----- -GU|----UC U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-WR- YGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AU 1021 --GG-GAA-- GA-AUAA-GG --GGU-A--( -----CGUG- ---------) --UA-CU-CU 1081 ---------- -------G-A U-GA-CGGU- A-CUA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---AGGU G-AAA-GC-A CU-CAG-C(- UC-A)A-CUG -AG-U-AAC- 1321 -UGCC-UUUG A-AAC-UGAU A-GUCUU-GA AUA-----CU U-AC-GAAGU AGC-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -GUUACUA-- ---------- ---------- ---------G 1501 UAA-GGU-UA UUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -CGA------ ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UU -GUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---AGCG--- -AC----GUA 1981 -GGU-A--(- GAGA-)-UAC -C-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGC-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-A- U-AGU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- GA-GCG-G(G 2881 -UGA)CCGU- ---------- GA-GCGAA-U CUUG--AAAG -AC-G-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-AUCU -GAA-G-ACG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.granul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga granulosa. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga granulosa. ORGANISM Capnocytophaga granulosa. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41347 LMG 16022 (T) = JCM 8566 BASE COUNT 385 a 292 c 429 g 321 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC--C (--UU----- ---------- ---------- 241 --------CG -)G--GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UA-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-AU----A AU--UAAA-- ---AU----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----A--U- G--GUG---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCC-A A|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --AGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G GA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AC-GA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -GGY-A--(- GAGA-)-UGC -C-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACC-AG-UG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.granu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga granulosa. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga granulosa. ORGANISM Capnocytophaga granulosa. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41348 LMG 12119 = FDC 6 BASE COUNT 391 a 294 c 437 g 324 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCY--C (--UU----- ---------- ---------- 241 --------CG -)G--GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -RCAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UA-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-AU----A AU--UAAA-- ---AU----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----A--U- G--GUG---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCN-A A|-GGC-UN- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --UGU-A--( -----CGUG- ---------) --UA-CA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G GA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AY-GA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -GGC-A--(- GAGA.).... ......U--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACC-AG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.spFDC8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sp.. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sp. ORGANISM Capnocytophaga sp. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41352 LMG 12116 = FDC 8 BASE COUNT 386 a 291 c 440 g 333 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC--C (--UU----- ---------- ---------- 241 --------CG -)G--GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---NAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UUGG-A--U UAAUAUC-CC 481 AU-AAU---- ---------- -------A-U UG-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----A--U- G--GUG---- 661 ----GAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-CG-AG-( GU-AAC-GG) -C-UCGCN-N A|-GGC-GA- CGA------- -----UA-GG 781 U-AG-G-NG| -U-CCU--(G -AGA)-GGGA ----UA-U-- CCC-C|C-NC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GGC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --GGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCNGUN-A) U-A-C-GGAG |-NAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGN- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UA-U UU-CAG-C(- UU-A)A-CUG -GG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UU U-GU-GAAGU UUU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G GA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAA--AU-AA UUGACG-CUG AG-A------ -------GA- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GU-A----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------UA -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------U-G ---ACUG--- -AC----GUA 1981 -CCU-A--(- GAGA-)-UGG -G-NNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-AUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AUU-GA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- UA-CUG-C(G 2881 -UGA)GCAG- ---------- GU-GCGAA-U CUUA--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UUG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-AC-CU A-GGGU-AAA ACC-AG-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.spS3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sp. str. S3. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sp. str. S3. ORGANISM Capnocytophaga sp. REFERENCE 1 AUTHORS Paster,B.J. and Dewhirst,F.E. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42010|g1147742 isolate_name= S3 BASE COUNT 393 a 301 c 441 g 325 t 2916 others ORIGIN 1 .......... .......... .......... .UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC--C (--UU----- ---------- ---------- 241 --------CG -)G--GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UG-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GC----A AU--UAAA-- ---AC----- ---------- 601 --(------- ---UGCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AGAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCC-A A|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --UGU-A--( -----CGAG- ---------) --UA-CA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AC-AA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -AU------- ---------- 1681 -(-GA-UA)A ---------- ---------- ---------- ---------G -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUG--- -AC----AGG 1981 -UGU-A--(- GAGA-)-UAC -G-CCNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACC-AG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.gingi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga gingivalis. ORGANISM Capnocytophaga gingivalis. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41346 LMG 12118 = FDC 44 BASE COUNT 397 a 298 c 436 g 324 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC--U (--UU----- ---------- ---------- 241 --------CG -)G--GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -RCAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAC---- ---------- -------A-U UG-U--G-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UA-GC----A AU--UAAA-- ---AC----- ---------- 601 --(------- ---UAYG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCC-A A|-GGC-UN- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --UGU-A--( -----CGAG- ---------) --UA-CA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AC-AA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -AU------- ---------- 1681 -(-GA-UA)A ---------- ---------- ---------- ---------G -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUG--- -AC----AGG 1981 -UGU-A--(- GAGA-)-UAC -G-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACC-AG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.gingi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga gingivalis. ORGANISM Capnocytophaga gingivalis. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information REFERENCE 2 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K. , Falsen,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14639 NB: same ATCC # as Cap.gingiv, but not same strain by rRNA seq. BASE COUNT 393 a 303 c 437 g 322 t 2921 others ORIGIN 1 .......... .......... .......... .UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC--U (--UU----- ---------- ---------- 241 --------CG -)G--GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UA-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-AU----A AU--UAAA-- ---AC----- ---------- 601 --(------- ---UGCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCN-A A|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-NC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --UGU-A--( -----CGUG- ---------) --UA-CA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---AGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AC-NA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GC------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------G -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUN--- -AC----AGG 1981 -UGU-A--(- GAGA-)-UAC -G-CCNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GC-CU A-GGGU-AAA ACC-AG-UG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.gingiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga gingivalis. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga gingivalis. ORGANISM Capnocytophaga gingivalis. REFERENCE 1 AUTHORS Conrads,G. and Luetticken,R. TITLE Nucleotide sequences of the 16S rRNA encoding genes from Capnocytophaga ochracea ATCC 33596, Capnocytophaga sputigena ATCC 33612 and Capnocytophaga gingivalis ATCC 33624 JOURNAL Nucleic Acids Res. 20, 5847-5847 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67608 NB: same ATCC # as Cap.gingi2, but not same strain by rRNA seq. BASE COUNT 403 a 307 c 444 g 333 t 2889 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GACA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAU---- ---------- -------A-U UA-U--U-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-AU----A AU--UAAA-- ---AC----- ---------- 601 --(------- ---UGCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACCCC-A A|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C AGG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-UC-(GGA A)-GAC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA-GG --UGU-A--( -----CGUG- ---------) --UA-CA-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CAG---AGGU G-AAA-GG-U UU-CAG-C(- UU-A)A-CUG -AG-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA AUA-----UC U-GU-GAAGU UCU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GGGACUA-- ---------- ---------- ---------A 1501 CAG--AC-AA UUGACG-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AACCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)AG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochra2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea str. 25 ATCC 33596 (T). ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea str. 25 ATCC 33596 (T). ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information REFERENCE 2 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K. , Falsen,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33596 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14635 biol_source= periodontal lesion isolate_name= 25 NB: former name Capnocytophaga ochracca BASE COUNT 389 a 299 c 435 g 337 t 2916 others ORIGIN 1 .......... .......... .......... .UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AU-A--G-GG ---ACG-(-- --------GC 541 AU-------- -)-CGU---U UU-UA----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-UA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-N- --GCU-A--( -----CGCG- ---------) --UA-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-UC-G UU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-NNUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -ACGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochrac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea str. 25 ATCC 33596 (T). ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea str. 25 ATCC 33596 (T). ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Conrads,G. and Luetticken,R. TITLE Nucleotide sequences of the 16S rRNA encoding genes from Capnocytophaga ochracea ATCC 33596, Capnocytophaga sputigena ATCC 33612 and Capnocytophaga gingivalis ATCC 33624 JOURNAL Nucleic Acids Res. 20, 5847-5847 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33596 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67610 biol_source= periodontal lesion isolate_name= 25 NB: former name Capnocytophaga ochracca BASE COUNT 397 a 305 c 444 g 344 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AU-A--G-GG ---ACG-(-- --------GC 541 AU-------- -)-CGU---U UU-UA----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-UA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GUUAA 1021 --GG-GAA-- GA-AUAA-GG --GCU-A--( -----CGCG- ---------) --UA-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-UC-G UU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-G ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)AG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.sputig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sputigena. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sputigena. ORGANISM Capnocytophaga sputigena. REFERENCE 1 AUTHORS Dewhirst,F. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 384 a 299 c 416 g 320 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGNA A-GUC-GAGG 121 G--------- -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CAAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACAU-A-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UA 481 AU-GGU---- ---------- -------A-U AU-A--G-GA ---GCG-(-- --------GC 541 AU-------- -)-CGU---U UU-UA----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAN-NG) -C-UCCCC-A A|-GGC-GA- CGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-GG --AGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-AU-AAG|U CAG---AGGU G-AAA-GC-G CU-UAG-C(- UC-A)A-CUA -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUC A-GUCUU-GA AUG-----AU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUNA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCG--- --CNA-UGGN A--AC-UGG- GG-GU-ACCU -GAA-C-ACG 3121 G-U------- -CN-CC---- ---------- ---------- -----(---- -GCC.....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.sputi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sputigena. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sputigena. ORGANISM Capnocytophaga sputigena. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information REFERENCE 2 AUTHORS Vandamme,P., Segers,P., Vancanneyt,M., Van Hove,K., Mutters,R., Hommez,J., Dewhirst,F., Paster,B., Kersters,K. , Falsen,E., Devriese,L.A., Bisgaard,M., Hinz,K.-H. and Mannheim,W. TITLE Ornithobacterium rhinotracheale gen. nov., sp. nov., isolated from the avian respiratory tract JOURNAL Int. J. Syst. Bacteriol. 44, 24-37 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14636 BASE COUNT 396 a 300 c 431 g 329 t 2920 others ORIGIN 1 .......... .......... .......... .UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGNA A-GUC-GAGG 121 G--------- -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CAAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACAU-A-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UA 481 AU-GGU---- ---------- -------A-U AU-A--G-GA ---GCG-(-- --------GC 541 AU-------- -)-CGU---U UU-UA----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAN-NG) -C-UCCCC-A A|-GGC-GA- CGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-GG --AGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-AU-AAG|U CAG---AGGU G-AAA-GC-G CU-UAG-C(- UC-A)A-CUA -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUC A-GUCUU-GA AUG-----AU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUNA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -CU-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.sputi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sputigena. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sputigena. ORGANISM Capnocytophaga sputigena. REFERENCE 1 AUTHORS Conrads,G. and Luetticken,R. TITLE Nucleotide sequences of the 16S rRNA encoding genes from Capnocytophaga ochracea ATCC 33596, Capnocytophaga sputigena ATCC 33612 and Capnocytophaga gingivalis ATCC 33624 JOURNAL Nucleic Acids Res. 20, 5847-5847 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67609 BASE COUNT 406 a 312 c 438 g 334 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CAAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACAU-A-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UA 481 AU-GGU---- ---------- -------A-U AU-A--G-GA ---GCG-(-- --------GC 541 AU-------- -)-CGU---U UU-UA----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-GA- CGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GUUAA 1021 --GG-GAA-- GA-AUAA-GG --AGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-AU-AAG|U CAG---AGGU G-AAA-GC-G CU-UAG-C(- UC-A)A-CUA -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUC A-GUCUU-GA AUG-----AU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-UA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUACUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------G-A ---ACUG--- -AC----AGA 1981 -GGU-A--(- GAGA-)-UAC -C-UCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -CGA)GCAG- ---------- GA-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AACCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)AG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochra4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea. ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41351 LMG 12117 = FDC 43 BASE COUNT 385 a 293 c 428 g 335 t 2935 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUNN-NU (--UU----- ---------- ---------- 241 --------CG -)GG-UNAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-AU ---ACG-(-- --------GC 541 AU-------- -)-CGU---G AU-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUAG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-GA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-NC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-GG --AGU-A--( -----CGUG- ---------) --UA-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CNCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-UAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GU-U----- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------GA -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -UGU-A--(- GAGA-)-UAC -G-CNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CNA---- ---------- ---------- ---N(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochra3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea. ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41350 BASE COUNT 385 a 301 c 438 g 331 t 2921 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UAGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUAG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-GA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-GG --ACU-A--( -----CGUG- ---------) --UA-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 G-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAU -G-CCCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AG-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-ACG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CU-GU-UU A-GGGU-AAA ACU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochra5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea. ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41353 LMG 12115 = FDC 7 BASE COUNT 386 a 295 c 429 g 330 t 2936 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUNA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-RY ---NYG-(-- --------GC 541 AU-------- -)-CRY---N AU-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-GA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-NC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(U-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-G- --RCU-A--( -----CGCG- ---------) --UN-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AY G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 G-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------U -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -GGU-A--(- GAGA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.ochra6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga ochracea. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga ochracea. ORGANISM Capnocytophaga ochracea. REFERENCE 1 AUTHORS Vandamme,P., Vancanneyt,M., van Belkum,A., Segers,P., Quint ,W.G.V., Kersters,K., Paster,B.J. and Dewhirst,F.E. TITLE Polyphasic analysis of strains from the genus Capnocytophaga and Centers for Disease Control Group DF-3 JOURNAL Int. J. Syst. Bacteriol. 46, 782-791 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41354 BASE COUNT 386 a 294 c 430 g 332 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUNA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-RY ---NYG-(-- --------GC 541 AU-------- -)-CRY---N AU-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-GA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-NC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(U-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-G- --RCU-A--( -----CGCG- ---------) --UN-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AY G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 G-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GU-U----- ---------- 1681 -(-UA-AG)- ---------- ---------- ---------- --------GA -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------A-G ---ACUG--- -AC----AGG 1981 -GGU-A--(- GAGA-)-UAC -C-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-ACG 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-AAA ACU-AG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.spS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sp. str. S1. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sp. str. S1. ORGANISM Capnocytophaga sp. REFERENCE 1 AUTHORS Paster,B.J. and Dewhirst,F.E. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42008|g1147740 isolate_name= S1 BASE COUNT 382 a 293 c 427 g 332 t 2942 others ORIGIN 1 .......... .......... .......... ...ACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAR---- ---|------ ACCG-GCGY- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-AU ---ACG-(-- --------GC 541 AU-------- -)-CGU---G AU-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUAG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-UA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(U-NA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-G- --GCU-N--( -----CGCG- ---------) --UN-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GU-U----- ---------- 1681 -(-UA-AG)- ---------- ---------- ---------- --------GA -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------R-G ---ACUG--- -AC----AGG 1981 -GGU-A--(- GAGA-)-UAC -G-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 AG-G-(UUAA -GU)-CCUAU NA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-ACG 3121 G-U------- -UN-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-NAA ACU-AG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cap.spS1b 4376 bp RNA RNA 02-JUL-1998 DEFINITION Capnocytophaga sp. str. S1B. ACCESSION No information KEYWORDS No information. SOURCE Capnocytophaga sp. str. S1B. ORGANISM Capnocytophaga sp. REFERENCE 1 AUTHORS Paster,B.J. and Dewhirst,F.E. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42009|g1147741 isolate_name= S1B BASE COUNT 381 a 294 c 425 g 328 t 2948 others ORIGIN 1 .......... .......... .......... ...ACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 A--------- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAR---- ---|------ ACCG-GCGY- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUU---C -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-U AG-U--A-AU ---ACG-(-- --------GC 541 AU-------- -)-CGU---G AU-AC----U AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUAG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GGC-UA- UGA------- -----UA-GA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGGA ----UG-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GGA A)-GAC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(U-NA-U- -G)GA-UUGU AAA--CUGC| UUUU-GU-AA 1021 --GG-GAA-- GA-AUAA-G- --GCU-N--( -----CGCG- ---------) --UN-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-NAUG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CUG-UAG-GC -G|-GG-CU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-G CU-CAG-C(- UC-A)A-CUG -AG-C-AAC- 1321 -UGCC-UUUG A-AAC-UGUU G-GUCUU-GA AUG-----GU U-GU-GAAGU AGU-U|GGAA 1381 UG-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACACAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -AUUACUA-- ---------- ---------- ---------A 1501 CAA--UU-AA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GU-U----- ---------- 1681 -(-UA-AG)- ---------- ---------- ---------- --------GA -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GU-UUA AAU-GG|--- -------R-G ---ACUG--- -AC----AGG 1981 -GGU-A--(- GAGA-)-UAC -G-NNNU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-UU-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-N 2221 AG-G-(UUAA -GU)-CCUAU NA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ---G(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CC-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-C-GU -UA--CAGAG AGC-A-G-C- CA-CUG-C(G 2881 -UGA)GCAG- ---------- GC-GCGAA-U CUAU--AAAG -AC-G-GUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-ACCU -GAA-G-ACG 3121 G-U------- -UN-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UU A-GGGU-NAA ACU-AG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.1.2.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.1.2.9 CY.LYTICA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.1.2.9 CY.LYTICA_SUBGROUP. ORGANISM 2.7.1.2.9 CY.LYTICA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.35a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 35a.. ACCESSION No information KEYWORDS No information. SOURCE clone 35a. ORGANISM clone 35a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89287 BASE COUNT 59 a 50 c 62 g 41 t 4164 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU C-CACAAU-- GG-GC-(GAG A)-GCC-UCA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --CGU-A--( -----CGUG- ---------) --UA-CG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.1111 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 1111.. ACCESSION No information KEYWORDS No information. SOURCE clone 1111. ORGANISM clone 1111. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89304 BASE COUNT 69 a 54 c 82 g 52 t 4119 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... U--AUUA-G- UUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-U G|-GCG-AU- -GA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAG A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACA-CU --CGG-GGG( A----CGUG- ---------) --UC-CG-AG 1081 ---------- -------C-U U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.salegens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium salegens. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium salegens. ORGANISM Flavobacterium salegens. REFERENCE 1 AUTHORS Dobson,S.J., Colwell,R.R., McMeekin,T.A. and Franzmann,P.P. TITLE Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake JOURNAL Int. J. Syst. Bacteriol. 43, 77-83 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92279 BASE COUNT 391 a 322 c 429 g 324 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--CCU-A C-CUUU---U -AGCA-G-GG 421 -AAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUGCC-CU 481 AU-AGU---- ---------- -------A-U GG-U--G-AU ---CUC-(-- --------UC 541 CU-------- -)-GAG---A UU-AU----C AU--UAAA-- ---CA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CUA---- 661 ----UUAG-- AUG---G-|G UAUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AG- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAG A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AC-AG 1021 --AG-GAA-- GA-ACCA-CU --CCC-A--( -----CGUG- ---------) --UG-GG-AG 1081 ---------- -------U-U U-GA-CGGU- A-CUC-U-GC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CA- 1261 G-UU-AAG|U CAG---UGGU G-AAA-GU-C UU-CCG-C(- UC-A)A-CGG -GA-G-AAC- 1321 -UGCC-AUUG A-UAC-UGAU U-GCCUU-GA GUU-----AU U-AU-GAAGU GGU-U|AGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 UAA--UA-UA CUGACN-CUG AU-G------ -------GA- C-GAAA-GC- GU-AGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- N-CC-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------A|G -CU-GU-UCG -GA-UC---- ---------- 1681 -(GAU-UA)A ---------- ---------- ---------- -------GAU -CUGAG-UGG 1741 UU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNAUN-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UCUG--- -AC----NGG 1981 -AGU-G--(- GAAA-)-CAC -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UG--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGC-CA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -GA--CAGAG AGC-A-G-C- CA-CUU-C(G 2881 -CGA)GAAG- ---------- GA-GCGAA-U CUAC--AAAC -CC-U-AUC- ACAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.54a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 54a.. ACCESSION No information KEYWORDS No information. SOURCE clone 54a. ORGANISM clone 54a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89301 BASE COUNT 55 a 49 c 68 g 41 t 4163 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ......U-GG 781 U-AG-G-GG| -C-CCUUU(G -AGA)-GGGG -----GAU-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 A-GGAAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-GAA-- GA-AACA-CU --CCU-A--( -----CGUG- ---------) --UA-GG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.gondwane 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium gondwanense. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium gondwanense. ORGANISM Flavobacterium gondwanense. REFERENCE 1 AUTHORS Dobson,S.J., Colwell,R.R., McMeekin,T.A. and Franzmann,P.P. TITLE Direct sequencing of the polymerase chain reaction-amplified 16S rRNA gene of Flavobacterium gondwanense sp. nov. and Flavobacterium salegens sp. nov., two new species from a hypersaline Antarctic lake JOURNAL Int. J. Syst. Bacteriol. 43, 77-83 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92278 DSM 5423 = ATCC 51278 BASE COUNT 394 a 296 c 398 g 331 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAN-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-A C-CUAU---U -ACUA-A-GA 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUAUU-UU 481 AU-GGU---- ---------- -------A-U UA-U--C-GA ---UUG-(-- --------GC 541 AU-------- -)-CAA---U UG-AU----A AU--UAAA-- ---G------ ---------- 601 --(------- ---GUUA--- ---)------ ---------| --------C- G--GUA---- 661 ----AUAG-- AUG---A-|G UAUGC----- -GU|----CC U--AUUA-G- CUU-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GA-(GCA A)-UCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AAAA-GG --UUC-A--( -----CGUG- ---------) --UG-AA-CU 1081 ---------- -------G-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU.. .........( .......... ...GGUA-A) U-N-N-GGAG |-GGUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-AC- 1261 A-AU-CAG|U CAG---UGGU G-AAA-GU-U UG-CGG-C(- UC-A)A-CCG -UA-A-AAU- 1321 -UGCC-AUUG A-UAC-UGUU G-UUCUU-GA GUG-----CU U-GU-GAAGU GGU-U|AGAA 1381 UG-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUCAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 CAA--UU-CA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-AGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- N-CC-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------A|G -CU-GU-UCN -GA-CU---- ---------- 1681 -(AAU-UG)C ---------- ---------- ---------- -------NGU -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 NUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACNGG-N -N-C-CC--G 1861 C-A--CA-AG CNGUNG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C N)--CNAGGA 1921 A-CCUUA-CC ANG-GC-UUA AAU-NC|--- -------A-G ---UUUG--- -AC----NNN 1981 -NNU-N--(- GAAA-)-CNN -C-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAA-AU-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UNG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU NA-------- CGAG-C--NC AACCC-CU-U |-UG--UUU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----U-G|G 2701 G-GA-CU-C- U-AGA-CA-U A-CU-G-CCA --GU(-G--U AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -GA--CAGAG AGC-A-G-C- CA-CUG-G(G 2881 -UGA)CCAG- ---------- GA-GCGAA-U CUAC--AAAC -CC-U-AUC- ACAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-N NNG-CNGUG- AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UCG 3121 N-U------- -NN-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-AG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)NG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3711 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3711.. ACCESSION No information KEYWORDS No information. SOURCE clone 3711. ORGANISM clone 3711. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89314 BASE COUNT 71 a 56 c 75 g 52 t 4122 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----CC U--AUUA-G- CUA-C---AU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A U|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GG-A ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|--CCA UGCC-GC-CU 961 G-U-AG-G-A G-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AC 1021 --GG-GAA-- GA-AACC-UA --UCC-U--( -----CGUG- ---------) --AG-GA-UA 1081 ---------- -------G-C U-GA-CGGU- A-CCG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.1411 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 1411.. ACCESSION No information KEYWORDS No information. SOURCE clone 1411. ORGANISM clone 1411. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89305 BASE COUNT 65 a 60 c 79 g 50 t 4122 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GU|----CC U--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A U|-GGC-UA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-GAA-- GA-AACC-UA --CCC-U--( ----UCGUG- ---------) --AG-GG-UA 1081 ---------- -------A-C U-GA-CGGU- A-CCG-U-AA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.33a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 33a.. ACCESSION No information KEYWORDS No information. SOURCE clone 33a. ORGANISM clone 33a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89285 BASE COUNT 71 a 54 c 73 g 49 t 4129 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ........G- CUA-G---UA 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-U A|-GGC-AA- CGA------- -----UA-GA 781 U-AG-G-GG| -N-CCU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(-CUA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACC-AC --UCU-A--( -----CGUG- ---------) --UA-GA-GU 1081 ---------- -------U-C U-GA-CGGU- A-CUG-U-AA G-AA--UAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.laterc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga latercula str. Lewin SIO-1 ATCC 23177. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga latercula str. Lewin SIO-1 ATCC 23177. ORGANISM Cytophaga latercula. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23177 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12665|g425724 isolate_name= Lewin SIO-1 BASE COUNT 347 a 248 c 335 g 308 t 3138 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUA- GAN--CCU-A C-CUUA---U -AGUA-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UUAUNCC-UU 481 AU-AGU---- ---------- -------A-U GA-U--A-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UA-AU----C AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UAAG-- AUG---G-|C UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-UA-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-AA- CGA------- -----UA-GA 781 U-AG-G-GN| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AU- C-A---UU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCN-UC-GU 961 G-U-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AG 1021 --AG-GAA-- GA-AACA-NU --UAC-A--( -----CGUG- ---------) --UG-GA-AC 1081 ---------- -------U-C U-GA-CGGU- A-CUC-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-GU-U UU-CGG-C(- UC-A)A-CCG -GA-A-AAU- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA AUC-----AU U-AU-GAAGU GGU-U|AGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 UAA--UG-UA UUGACG-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------A|G -CU-GU-UCG -GN-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GU -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UAUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUUC-C AG-CNA---- ---------- ---------- ---G(---UA ---AUG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----U-G|G 2701 G-AA-CU-C- U-AGC-NA-G A-CU-G-CCG --GU(-G--C AN)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CU-CUU-U(N 2881 -CUA)GAAG- ---------- GA-NCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.latercu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga latercula str. Lewin SIO-1 ATCC 23177. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga latercula str. Lewin SIO-1 ATCC 23177. ORGANISM Cytophaga latercula. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23177 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58769 isolate_name= Lewin SIO-1 BASE COUNT 404 a 302 c 415 g 337 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNCACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- GAA--CCU-A C-CUUA---U -AGUA-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UU 481 AU-AGU---- ---------- -------A-U GA-U--A-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UA-AU----C AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UAAG-- AUG---G-|C UAUGC----- -GU|----UC U--AUUA-G- CUA-G---UU 721 GG-UA-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-AA- CGA------- -----UA-GA 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-AG 1021 --AG-GAA-- GA-AACA-GU --UCC-A--( -----CGUG- ---------) --UG-GA-AC 1081 ---------- -------U-C U-GA-CGGU- A-CUC-U-AC G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-UC- 1261 U-GU-AAG|U CAG---UGGU G-AAA-GU-U UU-CGG-C(- UC-A)A-CCG -GA-A-AAU- 1321 -UGCC-AUUG A-UAC-UGCA G-GUCUU-GA AUC-----AU U-AU-GAAGU GGU-U|AGAA 1381 UA-AGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACUUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 UAA--UG-UA UUGACG-CUA AG-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------A|G -CU-GU-UCG -GA-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GU -CUGAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UAUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----U-G|G 2701 G-AA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CA-CUU-U(G 2881 -CGA)GAAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GC-NNG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAA ACU-GG-UA- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg13 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10948 library_source= marine snow associated BASE COUNT 399 a 290 c 395 g 340 t 2952 others ORIGIN 1 .......... .......... .......... ...ACCGUUU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG--AU -GAAC-GC-- UAGC-G-C-A -GGC-CU--A ACAC-AUGCA A-GUG-CAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAU-GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GGCC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-A C-CUUU---U -ACAG-G-AG 421 -GAU-AG-CC U--------- ------UU-- A(-GAAA-)U -GAAG-A--U UAAUACU-CC 481 AU-AGU---- ---------- -------A-U UA-U--U-GA ---UUG-(-- --------GC 541 AU-------- -)-CAA---U UA-AU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----AAAG-- AUG---A-|G UAUGC----- -GU|----UC U--AUUA-G- CUA-G---AU 721 GG-UG-UG-( GU-AAC-GG) -C-ACACC-A U|-GGC-UA- CGA------- -----UA-GA 781 U-AG-G-GG| -C-CCU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(GCUA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AACC-GC --UCU-A--( -----CGUG- ---------) --UA-GA-GU 1081 ---------- -------U-C U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GU -G|-GA-UA- 1261 A-UU-AAG|U CAG---AGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-A-AAU- 1321 -UGCC-UUUG A-UAC-UGGU U-AUCUU-GA GUU-----AU U-AU-GAAGU AGU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------A 1501 UAA--UU-AA CUGACA-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UCG -GA-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GU -UUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|-|A-CCU- --GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UGUG--- -AC----AGG 1981 -ACU-A--(- GAGA-)-UAG -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---U(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UA -GA--CAGAG AGC-A-G-C- CA-CUU-C(G 2881 -CGA)GAAG- ---------- GA-GCGAA-U CUAU--AAAC -UA-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-GCCU -GAA-G-UCC 3121 G-U------- -C........ .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.marinof 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga marinoflava. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga marinoflava. ORGANISM Cytophaga marinoflava. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58770 ATCC 19326 = NCIMB 397 (T) NB: same ATCC/NCIMB as Cy.marino2, but not same strain by rRNA seq. BASE COUNT 397 a 314 c 426 g 326 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NCUACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-G C-CUUG---U -ACUG-G-AG 421 -UAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUCCU-CC 481 AU-AGU---- ---------- -------C-U AU-U--G-AU ---UUG-(-- --------GC 541 AU-------- -)-CAU---U UU-AA----U AG--UAAA-- ---G------ ---------- 601 --(------- ---GUUA--- ---)------ ---------| --------C- G--GUA---- 661 ----CAAG-- AUG---A-|G CAUGC----- -GU|----CC U--AUUA-G- CUA-G---UA 721 GG-UG-UG-( GU-AAC-GG) -C-ACACC-U A|-GGC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-AC 1021 --GG-GAA-- GA-AUAA-GG --UCU-A--( -----CGAG- ---------) --UA-GG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GU -G|-GA-CU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GU-C UG-CAG-C(- UU-A)A-CUG -UA-G-AAU- 1321 -UGCC-AUUG A-UAC-UGUU A-GUCUU-GA AUU-----GU U-AU-GAAGU AAC-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUA-- ---------- ---------- ---------A 1501 UAA--UA-YA UUGACA-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------A|G -CU-GU-CCG -GC-CC---- ---------- 1681 -(GAU-UG)A ---------- ---------- ---------- -------GGG -CUGGG-UGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---UCUG--- -AC----AGG 1981 -AGU-G--(- GAAA-)-CAU -U-CUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UG--GUU- 2281 AG--UUGC-C AU-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGC-CA-G A-CU-G-CCA --GU(-G--C AA)-ACU-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CA-CUU-U(G 2881 -CAA)AGAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGGA A--GC-NNG- GG-GU-ACCU -GAA-G-UCC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGU-AAG ACC-GG-UA- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.37a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 37a.. ACCESSION No information KEYWORDS No information. SOURCE clone 37a. ORGANISM clone 37a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89288 BASE COUNT 61 a 45 c 67 g 41 t 4162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(-AG A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GC --CUU-A--( -----CGUG- ---------) --UA-AG-GU 1081 ---------- -------GGA U-GA-CGGN- A-CUG-U-AA C-AG--AAUA A......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3911.. ACCESSION No information KEYWORDS No information. SOURCE clone 3911. ORGANISM clone 3911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89316 BASE COUNT 58 a 45 c 68 g 41 t 4164 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .CA------- -----UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(U-CG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAG A)-GCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GC --CUU-A--( -----CGUG- ---------) --UA-AG-GU 1081 ---------- -------G-A U-GC-CGGN- A-CUG-U-AA G-AA--UAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.34a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 34a.. ACCESSION No information KEYWORDS No information. SOURCE clone 34a. ORGANISM clone 34a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89286 BASE COUNT 53 a 44 c 66 g 41 t 4172 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UG-GG 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAG A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GC --CUU-A--( -----CGUG- ---------) --UA-AG-GU 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE38 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-38. str. E-38. ACCESSION No information KEYWORDS No information. SOURCE str. E-38. str. E-38. ORGANISM str. E-38. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58340|g1718216 biol_source= lignin enrichment culture isolate_name= E-38 BASE COUNT 77 a 65 c 92 g 76 t 4066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .........C A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -ACU-A--(- GAGA-)-UAG -U-UUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-G UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GG-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG GGC-A-G... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.lytica2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga lytica str. LIM-21 ATCC 23178. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga lytica str. LIM-21 ATCC 23178. ORGANISM Cytophaga lytica. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23178 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12666|g425725 ATCC 23178 = DSM 2039 (T) isolate_name= LIM-21 BASE COUNT 337 a 245 c 344 g 311 t 3139 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUA---C -ACUA-A-GG 421 -GAU-AG-CC C--------- ------UG-- U(-GAAA-)U -UUGG-A--U UNACACC-UU 481 AU-NGU---- ---------- -------U-U AU-U--U-UU ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UUAAA----U AA--UAAA-- ---G------ ---------- 601 --(------- ---UUUN--- ---)------ ---------| --------C- G--GUG---- 661 ----UAAG-- AUG---A-|G UAUGC----- -NU|----CC C--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- CGA------- -----UG-GG 781 U-AG-G-GN| -C-CCU--(G -AGA)-GGGG ----GA-N-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AU- C-N---UU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GAG A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GG --ACU-A--( -----CGUG- ---------) --UA-GU-CU 1081 ---------- -------G-G U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-G-AAU- 1321 -UGCC-UUUG A-UAC-UGAU G-GUCUU-GA AUU-----AU U-GU-GAAGU GGU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 CAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UUG -GA-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------AU -CUGAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(A CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CNNU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CUC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GU-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CU-CUU-A(G 2881 -CGA)UAAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCNNC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.marino2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga marinoflava. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga marinoflava. ORGANISM Cytophaga marinoflava. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12668|g425727 NCIMB 397 (T) = ATCC 19326 NB: same ATCC/NCIMB as Cy.marinof, but not same strain by rRNA seq. BASE COUNT 339 a 245 c 344 g 308 t 3140 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUA---C -ACUA-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-UU 481 AU-GGU---- ---------- -------U-U AU-U--A-AG ---AUG-(-- --------GC 541 AU-U------ -)-CAU---- UUUAA----U AA--UAAA-- ---G------ ---------- 601 --(------- ---AUUA--- ---)------ ---------| --------C- G--GUG---- 661 ----UAAG-- AUG---A-|G UAUGC----- -GU|----AC C--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- CGA------- -----UG-GU 781 U-AG-G-GU| -C-CCU--(G -AUA)-GGGG ----UA-U-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AU- C-N---UU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GAG N)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUNC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GG --ACU-A--( -----CGUG- ---------) --UA-GU-CU 1081 ---------- -------G-G U-GN-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-N NCUCC-GUG( CCA--GCANC CNCGGUN-A) U-A-C-GGAG |-GGUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CC- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-G-AAU- 1321 -UGCC-UUUG A-UAC-UGAU G-GNCUU-GA AUU-----AU U-GU-GAAGU GGU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 CAA--UA-UA UUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-GUG -GU-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -CUGCG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AU-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GN-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CA-CUU-A(G 2881 -CGA)UAAG- ---------- GA-NCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCANC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.lytica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga lytica str. LIM-21 ATCC 23178. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga lytica str. LIM-21 ATCC 23178. ORGANISM Cytophaga lytica. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23178 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62796 ATCC 23178 = DSM 2039 (T) isolate_name= LIM-21 BASE COUNT 404 a 307 c 425 g 347 t 2893 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNAACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CUUA---C -ACUA-A-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAACACC-UU 481 AU-AGU---- ---------- -------U-U AU-U--U-UU ---AUG-(-- --------GC 541 AU-------- -)-CAU---- UUAAA----U AA--UAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--GUG---- 661 ----UAAG-- AUG---A-|G UAUGC----- -GU|----CC C--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- CGA------- -----UG-GG 781 N-AG-G-GG| -C-CCU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-AG-(GAG A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UUUU-AU-AC 1021 --AG-GAA-- GA-AUAA-GG --ACU-A--( -----CGUG- ---------) --UA-GU-CU 1081 ---------- -------G-G U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-G-AAU- 1321 -UGCC-UUUG A-UAC-UGAU G-GUCUU-GA AUU-----AU U-GU-GAAGU GGU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUCACUA-- ---------- ---------- ---------A 1501 CAA--UU-GA UUGACG-CUG AU-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UUG -GA-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------AU -CUGAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GU|--- -------A-G ---AUUG--- -AC----AGG 1981 -UUU-A--(- GAGA-)-UAG -A-CUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGC-A-G-C- CA-CUU-A(G 2881 -CGA)UAAG- ---------- GA-GCGAA-U CUAU--AAAA -CC-U-AUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GG-GU-ACCU -GAA-G-UUC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-AC-CU A-GGGU-AAA ACU-GG-UA- ACU-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE45 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-45. str. E-45. ACCESSION No information KEYWORDS No information. SOURCE str. E-45. str. E-45. ORGANISM str. E-45. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58353|g1718229 biol_source= lignin enrichment culture isolate_name= E-45 BASE COUNT 83 a 94 c 116 g 68 t 4015 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .........G -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GN-UUA NAU-GC|--- -------A-G ---GCUG--- -CA----UGG 1981 -GGU-G--(- GAGA-)-CAC -C-CCUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CCG-NC-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AGC-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-NAUC-AU CAC-G-GG-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGN-C-GG -UN--CAGAG GGA-A-G-C- CA-CCC-C(G 2881 -CAA)GGGG- ---------- GN-GCGGA-U CUAC--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGGGUCU (UNAAAC-U- C)-GACCCCG -NGAAG.... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.uligin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga uliginosa. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga uliginosa. ORGANISM Cytophaga uliginosa. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12674|g425732 BASE COUNT 318 a 273 c 370 g 271 t 3144 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGC---AAC -GC-GUAUA- CAA--UCU-G C-CCCC---U -ACAG-UUGG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-AC 481 AU-GGU---- ---------- -------A-C CA-U--A-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A UUUAU----G GU--UAAA-- ---G------ ---------- 601 --(------- ---GUUA--- ---)------ ---------| --------C- G--GUA---- 661 ----GGGU-- AUG---A-|G UAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UN-AG-( GU-ANC-GG) -C-UCACC-A A|-GAC-CG- CGA------- -----UG-GG 781 U-AG-G-GU| -C-CCU--(G -AGA)-GGGG ----UA-U-- NCN-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GGG A)-NCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UAGU AAA--CUNC| UUUU-AU-AC 1021 --GG-GAA-- GA-AAAA-GG --GCU-A--( -----CGUG- ---------) --UA-GC-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A NCUCC-GUG( CCA--GCANC CNCGGNN-A) U-N-C-GGAG |-GGUC-C-- 1201 UAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CC- 1261 G-AU-AAG|U CAG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-A-AAU- 1321 -UGCC-UUUG A-UAC-UGUC G-GUCUU-GA GUU-----AU A-GU-GAAGU UGC-C|GGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUGACUA-- ---------- ---------- ---------A 1501 CUA--UA-UA CUGACG-CUG AU-G------ -------GA- C-UAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-CCG -GG-UU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -CUGGN-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GC|--- -------A-U ---AUUG--- -NC----AGG 1981 -GGU-A--(- GAGA-)-UAC -C-NNNU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-GG-G A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGNC- 2821 N-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGCG GGN-A-G-C- CA-UGC-G(G 2881 -CAA)CGCA- ---------- GA-GCGGA-U CCAC--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCANC-U- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.uligino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga uliginosa str. Zobell 553 ATCC 14397 (T). ACCESSION No information KEYWORDS No information. SOURCE Cytophaga uliginosa str. Zobell 553 ATCC 14397 (T). ORGANISM Cytophaga uliginosa. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14397 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62799 isolate_name= Zobell 553 BASE COUNT 391 a 349 c 454 g 311 t 2871 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNACGAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G ACCA-GCGC- 361 -A-CG-GG-U GCGC---AAC -GC-GUAUA- CAA--UCU-G C-CCCC---U -ACUG-U-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-AC 481 AU-GGU---- ---------- -------A-C CA-U--A-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A UUUAU----G GU--UAAA-- ---G------ ---------- 601 --(------- ---GUUA--- ---)------ ---------| --------C- G--GUA---- 661 ----GGGN-- AUG---A-|G UAUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-CG- CGA------- -----UG-GG 781 U-AG-G-GG| -C-CCU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GGG A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--U-G CC(C-UA-U- -G)GG-UAGU AAA--CUGC| UUUU-AU-AC 1021 --GG-GAA-- GA-AAAA-GG --GCU-A--( -----CGUG- ---------) --UA-GC-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-CC- 1261 G-AU-AAG|U CAG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-A-AAU- 1321 -UGCC-UUUG A-UAC-UGUC G-GUCUU-GA GUU-----AU A-GU-GAAGU UGC-C|GGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-ACAUAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUGACUA-- ---------- ---------- ---------A 1501 CUA--UA-UA CUGACG-CUG AU-G------ -------GA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-CCG -GG-UC---- ---------- 1681 -(CUU-GA)A ---------- ---------- ---------- -------GGC -CUGGG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUA AAU-GC|--- -------A-U ---AUUG--- -AC----AGG 1981 -GGU-A--(- GAGA-)-UAC -C-UUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-UU-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-GG-N A-CU-G-CCG --GU(-G--C AA)-ACC-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-A-G-C- CA-UGC-G(G 2881 -CAA)CGCA- ---------- GA-GCGGA-U CCAC--AAAA -CC-G-GUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AGCCAU)-G AUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GA-GU-GCCU -GAA-G-UCC 3121 G-U------- -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-CU A-GGGC-AAG AUC-GG-UA- ACU-AGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-G... .(.GA-A)G. .......... GAACACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2-SUBD 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2 SUBDIVISION_II. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2 SUBDIVISION_II. ORGANISM 2.7.2 SUBDIVISION_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.1-EN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.1 ENV.AGG58_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.1 ENV.AGG58_SUBGROUP. ORGANISM 2.7.2.1 ENV.AGG58_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg58 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10946 library_source= marine snow associated BASE COUNT 384 a 316 c 407 g 304 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UAGC--GC-A -GGC-CU--A ACAC-AUGCA A-GUA-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUU-G---- 361 -A-CG-GG-U KCGU---AAC -GC-GUAUG- CAA--CCU-A C-CCAU---A -ACAG-G-GG 421 -GAU-AG-CC C--------- ------AU-- A(-GAAA-)U -GUGG-A--U UAAUACC-CC 481 AU-AAC---- ---------- -------A-U CA-U--A-GA ---UUG-(-- --------GC 541 AU-------- -)-CAU---G AA-AU----G AU--UAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AUGG-- AUG---G-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-UG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-AG-(GAA A)-CUC-UGA G-CA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--U-G CC(--UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- GA-ACUA-CA --GCU-A--( -----CGUG- ---------) --UA-GC-UG 1081 ---------- -------U-U U-GA-CGCGU A-CUA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCSGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 AAU-GCCGUU AU-CCGGUUA -UU-GGGU|U UAAA-GGGU- CCG-UAG-GC -G|-GG-UU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-UC-C UA-CAG-C(- UC-A)A-CUG -UA-G-AAC- 1321 -UGCC-AUUG A-AAC-UGGU A-ACCUU-GA GUA-----UA A-UU-GAAGU GGG-C|GGAA 1381 UG-UGUCAU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUA-- ---------- ---------- ---------A 1501 GUU--AU-AA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------C|G -UU-GC-UGG -C-------- ---------- 1681 -(GAU-AC)A ---------- ---------- ---------- --------CA -GUCAG-UGA 1741 CC--AA---- --GC-(GNA- ---A)G-UG- UUAA-GUGUA C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UUA AAU-GC|--- -------A-A ---AACG--- -AC----AGA 1981 -CUA-U--(- GAAA-)-AUA -G-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGU-UU-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-A A-CU-G-CCC --C-(-G--C AA)-GCG-UG -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-A-GG -GA--CAGAG GGC-A-G-C- CA-CCU-G(G 2881 -UGA)CAGG- ---------- GA-GCGAA-U CCUA--AAAC -CC-U-AUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-UGG- GA-GU-GCCU -GAA-G-UCG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CN-GC-CU A-GGGU-AAA A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A23j 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A23j.. ACCESSION No information KEYWORDS No information. SOURCE clone A23j. ORGANISM clone A23j. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91446|g987751 BASE COUNT 86 a 61 c 98 g 76 t 4055 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-G--C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGCC A-GUCUG-GA GUU-----UG G-UU-GAGGU AGC-U|GGAA 1381 UG-UGUCAU- GUA-GCG(-G UGAAA)-UGC -UU-AGAG-A UG-ACACAGG AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACCA-- ---------- ---------- ---------A 1501 GCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA U--UA-CU-- -------C|G -UU-GU-UGG -C-------- -A-------- 1681 -(AUA-UA)C U--------- ---------- ---------- ---------- -GUCAG-UGA 1741 CU--GA.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD35 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26222|g498424 library_source= unidentified soil bacterium from paddy field BASE COUNT 72 a 64 c 75 g 67 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-CC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GG-G A-CU-G-CUU --GG(-UU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAC-G-UC -UA--GGGC- 2821 U-AGA-CA-C GUG--CUACA AUGGU-A-GA -UA--CAACG GGA-U-G-C- AA-GCU-G(G 2881 -UGA)CAGC- ---------- AA-GCCAA-U CCCU-UAAAA -UC-U-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAU-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.2-SP 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.2 SPHINGOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.2 SPHINGOBACTERIUM_GROUP. ORGANISM 2.7.2.2 SPHINGOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1097 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1097. str. SBR1097. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1097. str. SBR1097. ORGANISM str. SBR1097. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84525|g871646 isolate_name= SBR1097 BASE COUNT 115 a 86 c 114 g 84 t 3977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGG-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UAUUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UCGAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCAU---AAC -AC-GUAUG- CAA--UUU-A C-CUCU---A -ACUG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U UU-C--U-GA ---AGG-(-- --------AC 541 AU-------- -)-CCU---U CG-GU----U AU--CAAA-- ---AC----- ---------- 601 --(------- ---UCAG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AGAG-- AUA---A-|G CAUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-GG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-UAA--G-G CC(U-A--U- -G)GG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2014 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2014. str. SBR2014. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2014. str. SBR2014. ORGANISM str. SBR2014. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84558|g871679 isolate_name= SBR2014 BASE COUNT 109 a 88 c 120 g 81 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-CU--A AUAC-NUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--UCU-A C-CUAU---A -ACUG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-GAU---- ---------- -------A-U CA-C--G-AA ---ACG-(-- --------GC 541 AU-------- -)-CGU---U UU-GU----G AU--CAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AUAG-- AUG---A-|G CAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-NC-(GCA A)-GGC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UG(C-UA-U- -G)CA-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.canada 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter canadensis. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter canadensis. ORGANISM Flexibacter canadensis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62793 ATCC 29591 = IFO 15130 (T) BASE COUNT 409 a 301 c 422 g 317 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAUACAACGG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UUCUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--CCU-A C-CUUC---A -AUUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U AU-C--A-GA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UA-GA----U AU--UAAA-- ---AC----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--U- G--AUU---- 661 ----GAAG-- AUG---G-|G CAUGC----- -GU|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UG-CA 781 U-AG-G-GG| -A-UCU--(G -AGA)-GGAU ----NG-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GU-CG 1021 --GG-GAA-- UA-AACC-UA --GAU-A--( -----CGUG- ---------) --UA-UU-UA 1081 ---------- -------G-U U-GA-AGGU- A-CCC-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-AA- 1261 A-UU-AAG|U CAG---AGGU G-AAA-GC-C UG-CAG-C(- UC-A)A-CUG -UA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-UACUU-GA GUA-----CA G-AU-GAAGU GGG-C|GGAA 1381 UG-UGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUA-- ---------- ---------- ---------A 1501 AGU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -CU-GU-CGG -C-------- -G-------- 1681 -(AUA-UA)C A--------- ---------- ---------- ---------- -GUCGG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----UGA 1981 -UUU-A--(- GAAA-)-UAG -A-UCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--AUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAU-CA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGAG GGC-U-G-C- GA-CCU-A(G 2881 -UAA)UAGG- ---------- AA-GCCAA-U CUCAA-AAAG -CC-A-UUC- ACAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GC-NGG- GG-GU-GCCU -AAA-G-ACU 3121 G-U------- -AG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GU-UU A-GGGC-AAA ACU-GG-UA- AUN-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP411 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP411.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP411. ORGANISM clone JAP411. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09780|g495532 BASE COUNT 89 a 63 c 78 g 59 t 4087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAAGA-GG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUA---A -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAGACC-GC 481 AU-AAA---- ---------- -------A-A CA-C--A-GG ---AUA-(-- --------GC 541 AU-------- -)-UAU---C CA-AU----G UU--CAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----UAAG-- AUG---G-|G CAUGC----- -GU|----GU C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-AC 781 U-AG-G-GG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.heparn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium heparinum str. HIM 762-3 ATCC 13125. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium heparinum str. HIM 762-3 ATCC 13125. ORGANISM Sphingobacterium heparinum. REFERENCE 1 AUTHORS Weisburg,W.G., Oyaizu,Y., Oyaizu,H. and Woese,C.R. TITLE Natural relationship between Bacteroides and Flavobacteria JOURNAL J. Bacteriol. 164, 230-236 (1985) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13125 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11657 Former RDP Sids: Cy.heparin ATCC 13125 = DSM 2366 (T) = NCIMB 9290 = IFO 12017 isolate_name= HIM 762-3 NB: GenBank entry M11657 has the organism as 'Flavobacterium heparinum' former name Cytophaga heparina BASE COUNT 427 a 333 c 440 g 319 t 2857 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAAGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUA---A -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAACACC-GC 481 AU-AAA---- ---------- -------A-A CA-C--A-GG ---AUA-(-- --------GC 541 AU-------- -)-UAU---C CA-AU----G UU--CAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----UAAG-- AUG---G-|G CAUGC----- -GU|----GU C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-AC 781 U-AG-G-GG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--A-G CC(C-UC-U- -G)GG-UCGU AAA--CUGC| UUUU-AU-UC 1021 --GG-GAA-- UA-AACC-UA --CUU-A--( -----CGUG- ---------) --UA-AG-UA 1081 ---------- -------G-C U-GA-AUGU- A-CCG-A-AG G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GA-C GG-UAG-C(- UC-A)A-CUA -UC-G-CAG- 1321 -UGCC-CUUG A-UAC-UGAC G-GGCUU-GA AUA-----CA C-UA-GAGGU AGG-C|GGAA 1381 UG-UGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCACAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------U 1501 GGU--GU-GA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------C|G -CU-GU-UAG -C-------- -G-------- 1681 -(AUA-UA)C A--------- ---------- ---------- ---------- -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----UUA 1981 -GAU-A--(- GAGA-)-UAU -U-UAAG--- U--------- ---GA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UC-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GU(-G--C AA)-ACA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGAG GGC-A-G-C- AA-GCU-G(G 2881 -CAA)CAGC- ---------- AA-GCGAA-U CUCAA-AAAG -CC-A-UUC- ACAGUUCGGA 2941 U-AGAGGUC- (UGCAAC-U- C)-GACCUCU -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GG-GU-ACCU -AAA-G-UAC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UC-CU A-GGGU-AAA ACC-GA-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... GAAUACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.sprvor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium spiritivorum. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium spiritivorum. ORGANISM Sphingobacterium spiritivorum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14026|g1160335 JCM 1277 (T) = GIFU 3101 = CDC E7288 = NCTC 11386 = ATCC 33861 BASE COUNT 337 a 277 c 366 g 283 t 3113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)CU-GGAUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -NC-GUGAG- CAA--CCU-A C-CUCU---G -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--U UAACACC-GC 481 AU-GAC---- ---------- -------A-U UA-U-UG-AU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UU-AU----A AU--CAAA-- ---UA----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----U--A- G--GAC---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GU| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UG 1021 --GG-GAA-- UA-AACC-UA --CGU-U--( -----UGUA- ---------) --AA-CG-UA 1081 ---------- -------G-C U-GA-AUGU- A-CCC-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GA-C GG-CAG-C(- UU-A)A-CUG -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAA G-AACUU-GA AUU-----AG G-UU-GAGGA AUG-C|GGAA 1381 UG-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUCAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CAUUCCA-- ---------- ---------- ---------A 1501 GCC--UU-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GA-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUC- G-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUN-NN)C A--------- ---------- ---------- ---------- -GUCAG-CNU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----UGA 1981 -UCC-A--(- GANA-)-CGG -A-UCAG--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGCG GGC-A-G-C- UA-CAC-A(G 2881 -UAA)UGUG- ---------- AU-GCCAA-U CUCUG-AAAG -CC-G-AUC- ACAGUUCGGA 2941 U-UGAGGUC- (UGCNNC-U- U)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.sprvo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium spiritivorum. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium spiritivorum. ORGANISM Sphingobacterium spiritivorum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58778 Former RDP Sids: F.spiritiv ATCC 33861 = GIFU 3101 = CDC E7288 = NCTC 11386 = JCM 1277 (T ) NB: former name Flavobacterium spiritivorum BASE COUNT 392 a 325 c 428 g 313 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-A C-CUCU---G -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--U UAACACC-GC 481 AU-GAC---- ---------- -------A-U UA-U-UG-AU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UU-AU----A AU--CAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAC---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-CG 1021 --GG-GAA-- UA-AACC-UA --CGU-U--( -----UGUA- ---------) --AA-CG-UA 1081 ---------- -------G-C U-GA-AUGU- A-CCC-N-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GA-C GG-CAG-C(- UU-A)A-CUG -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAA G-AACUU-GA AUU-----AG G-UU-GAGGA AUG-C|GGAA 1381 UG-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUCAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CAUUCCA-- ---------- ---------- ---------A 1501 GCC--UN-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUA-GA)C A--------- ---------- ---------- ---------- -GUCAG-CGU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----UGA 1981 -UCC-A--(- GAGA-)-CGG -A-UCAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GC(-G--N NA)-GCA-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGCG GGC-A-G-C- UA-CAC-A(G 2881 -UAA)UGUG- ---------- AU-GCCAA-U CUCUG-AAAG -CC-G-AUC- ACAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GU-UGG- GG-GU-GCCU -AAA-G-CAU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UG-UU A-GGGC-AAA ACC-GA-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.yabuuchi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium yabuuchiae. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium yabuuchiae. ORGANISM Flavobacterium yabuuchiae. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14021|g1711224 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 337 a 278 c 364 g 271 t 3126 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...G-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-A C-CUCU---G -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -UCGG-A--U UAACACC-GC 481 AU-GAC---- ---------- -------A-U UA-U-AG-AU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UU-AU----A AU--CAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GGA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-CG 1021 --GG-GAA-- UA-AACC-UA --CGU-U--( -----UGUA- ---------) --AA-CG-UA 1081 ---------- -------G-C U-GA-AUGU- A-CCC-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCNNUN-A) U-A-C-GGAG |-NAUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GA-C GG-CAG-C(- UU-A)A-CUG -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAA G-AACUU-GA AUG-----CG G-UU-GAGGA AUG-C|GGAA 1381 UG-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUCAG- AACC-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CAUUCCA-- ---------- ---------- ---------A 1501 GCC--GU-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUA-GA)C A--------- ---------- ---------- ---------- -GNCAG-CGU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-AC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----UGA 1981 -UCC-A--(- GANA-)-CGG -A-UCAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CNN---- ---------- ---------- ---A(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GN-CU-C- U-AAA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-UG-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGCG GGC-A-G-C- UA-CAC-A(G 2881 -UAA)UGUG- ---------- AU-GCUAA-U CUCUG-AAAG -CC-G-AUC- ACAGUUCGGA 2941 U-UGAGGUC- (UGCANC-U- U)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUNC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.mizutaii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium mizutaii str. KM 1203 ATCC 33299 (T). ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium mizutaii str. KM 1203 ATCC 33299 (T). ORGANISM Flavobacterium mizutaii. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33299 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58796 Former RDP Sids: Sph.mizuta isolate_name= KM 1203 NB: former name Sphingobacterium mizutae BASE COUNT 367 a 338 c 445 g 292 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GGAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------C CAUCGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCNA UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-G C-CNAU---A -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAACACC-GC 481 AU-GAC---- ---------- -------A-C UG-C--U-UU ---CCG-(-- --------GC 541 AU-------- -)-CGG---G AG-GU----N GU--CAAA-- ---UA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----AUGG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACN-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-GG-(GCA A)-CCC-NGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-UA 1021 --GG-GAA-- UA-AACC-CC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------G-C U-GA-AUGU- A-CCU-N-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-NC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GA-C GG-CAG-C(- UC-A)A-CUG -UC-G-CAG- 1321 -UGCC-CUUG A-UAC-UGAA G-UGCUU-GA AUG-----CG G-CU-GAAGA CGG-C|GGAA 1381 UG-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGUCUN-- ---------- ---------- ---------A 1501 GCC--GU-UA UUGACG-CUG AU-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA U--GA-CU-- -------C|G -AU-GU-UUG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------C -GUAAG-CGU 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUCAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACNGG-N -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGNA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---ACUG--- -AA----GGG 1981 -CGC-A--(- GAGA-)-CGC -G-CCNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAG-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UN -N-AGUC-AU CAU-G-GC-C CNUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGCG GGC-A-G-C- UA-CAC-A(G 2881 -CAA)UGUG- ---------- GU-GCCAA-U CUCGA-AAAG -CC-A-UUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCNG -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGAA A--GC-UGG- GG-GU-ACCU -AAA-G-CAU 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UG-UU A-GGGU-AAA ACC-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.mizutai2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium mizutaii. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium mizutaii. ORGANISM Flavobacterium mizutaii. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14024|g1313910 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 287 c 381 g 258 t 3131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-G C-CCAU---A -UCAG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAACACC-GC 481 AU-GAC---- ---------- -------A-C UG-C--U-UU ---CCG-(-- --------GC 541 AU-------- -)-CGG---G AG-GN----A GU--NAAA-- ---UA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----AUGG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GAUC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-GG-(GUA A)-CCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A C-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUNC| UUUU-GU-UA 1021 --GG-GAA-- UN-AACC-NC --GCU-A--( -----CGUG- ---------) --UA-GC-GG 1081 ---------- -------G-C U-GA-AUGU- A-CCU-C-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-AC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GA-C GG-CAG-C(- UC-A)A-CUG -UC-G-CAG- 1321 -UGCC-CUUG A-UAC-UGAA G-UGCUU-GA AUG-----CG G-UU-GAAGA CGG-C|GGAA 1381 UG-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUCAG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -AUGUCUU-- ---------- ---------- ---------A 1501 GCC--GU-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--GA-CU-- -------C|G -AU-GU-UUG -CG------- ---------- 1681 -(AUA-UN)C ---------- ---------- ---------- ---------C -GUAAG-CGU 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUCAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---ACUG--- -AA----GGG 1981 -CGC-A--(- GAGA-)-CGC -N-CNNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAG-GA-AAC |---U|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGCG GGC-A-G-C- UA-CAC-A(G 2881 -CAA)UGUG- ---------- GU-GCCAA-U CUCGA-AAAG -CC-A-UUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- U)-GACCCCG -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.mulvor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium multivorum.. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium multivorum. ORGANISM Sphingobacterium multivorum. REFERENCE 1 AUTHORS Fenton,M. and Jarvis,B.D. TITLE Expression of the symbiotic plasmid from Rhizobium leguminosarum biovar trifolii in Sphingobacterium multivorum JOURNAL Can. J. Microbiol. 40 (10), 873-879 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01879|g517194 BASE COUNT 90 a 76 c 102 g 64 t 4044 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAN -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GGAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------C CAUCGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CGAGA UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-A C-CUCU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------CU-- C(-GAAA-)G -AGAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U CA-A--C-AG ---UUC-(-- --------GC 541 AU-------- -)-GUU---C GG-UU----G AU--UAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.mulvo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium multivorum. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium multivorum. ORGANISM Sphingobacterium multivorum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14025|g1160334 BASE COUNT 328 a 275 c 354 g 274 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...G-GCGC- 361 -A-CG-GG-U GCGU---AAC -NC-GUGAG- CAA--CCU-A C-CUCU---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------CU-- C(-GAAA-)G -AGAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U CA-A--C-NN ---NNN-(-- --------GC 541 AU-------- -)-GUU---C GG-UU----G AU--UAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-NA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-A 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-CC 1021 --AG-GAA-- UA-AACC-UA --AAU-A--( -----CGUG- ---------) --UA-UU-UA 1081 ---------- -------G-C U-GA-AUGU- A-CUG-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNN NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 UAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UN-C GG-UGG-C(- UN-N)A-CCA -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAU G-GGCUU-GA AUC-----CU U-UG-AACGU GGG-C|GGAA 1381 UA-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUA-- ---------- ---------- ---------A 1501 GCU--GG-UA UUGACG-CUG AU-G------ -------CA- C-UAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 ANC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUN-GA)C A--------- ---------- ---------- ---------- -NCCAG-CNU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-NAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -AA----GAG 1981 -UGC-A--(- GAGA-)-CGC -A-CUNN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-N(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCCC AA-------- CGAN-C--CC NACCC-CN-A |-NG--UUU- 2281 AG--NUUC-C AA-CAN---- ---------- ---------- ---G(---UU ---ANG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GU(-G--C AA)-ACA-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGCG GGC-A-G-C- UA-CAU-A(G 2881 -CAA)UAUG- ---------- AU-GCUAA-U CUCUA-AAAG -CC-A-UUC- ACAGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- N)-GACCCCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.thalpo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium thalpophilum. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium thalpophilum. ORGANISM Sphingobacterium thalpophilum. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58779 Former RDP Sids: F.thalpoph ATCC 43320 = IFO 14963 = NCTC 11429 (T) NB: former name Flavobacterium thalpophilum BASE COUNT 375 a 328 c 440 g 310 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GGAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------C CAUCGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCAA UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-G C-CUCC---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------CU-- C(-GAAA-)G -AGAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U AA-U--A-UU ---CCG-(-- --------GC 541 AU-------- -)-CGG---G AU-AU----U AU--UAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----GGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UR-GG-( GU-AAC-GG) -C-CYACN-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|N-NC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-CC 1021 --GG-GAA-- UA-AACC-UC --CUU-A--( -----CGAG- ---------) --UA-GG-GA 1081 ---------- -------G-C U-GA-AUGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UA-C GG-UGG-C(- UC-A)A-CCA -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAC G-GGCUU-GA AUC-----CA U-AU-GAAGU GGG-C|GGAA 1381 UA-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUN-- ---------- ---------- ---------A 1501 GCU--GG-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--G 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUA-GA)C A--------- ---------- ---------- ---------- -GCCAG-CGU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGN-N -G-C-CN--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -GA----GGA 1981 -UGC-A--(- GAGA-)-CGC -A-UCNG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GU(-G--C AA)-ACA-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-NG -UA--CAGCG GGN-A-G-C- UA-GCU-G(G 2881 -CAA)CAGC- ---------- AU-GCUAA-U CUCUA-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGAA A--GU-UGG- GG-GU-ACCU -AAA-G-CAU 3121 G-U------- -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-UG-UC A-GGGU-AAA ACC-GA-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.thalp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium thalpophilum. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium thalpophilum. ORGANISM Sphingobacterium thalpophilum. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov: phylogenetic analysis of the Flavobacterium-Cytophaga complex JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14020|g1711223 IFO 14963 = NCTC 11429 (T) = ATCC 43320 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 281 c 376 g 264 t 3135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ...CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-G C-CUCC---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------CU-- C(-GAAA-)G -AGAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U AA-U--N-NN ---NNN-(-- --------GC 541 AU-------- -)-CGG---N AU-AN----U AU--UAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----GGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-N|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-A 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-CC 1021 --GG-GAA-- UN-AACC-UC --CUU-A--( -----CGAG- ---------) --UA-GG-GA 1081 ---------- -------G-C U-GA-AUGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCNNC NNCGGUN-A) U-A-C-GGAG |-NAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UA-C GG-UGG-C(- UC-A)A-CCA -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAC G-GGCUU-GA AUC-----CA U-AU-GAAGU GGG-C|GGAA 1381 UA-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUA-- ---------- ---------- ---------A 1501 GCU--GG-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUA-GA)C A--------- ---------- ---------- ---------- -GCCAG-CGU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GU|--- ---------U ---AGUG--- -GA----GGA 1981 -UGC-A--(- GAGA-)-CGC -A-UCNG--- U--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-GA-AAC |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAA-CA-G A-CU-G-CCU --GU(-G--C AA)-ACA-GU -GAGG-A-AG 2761 G-UG-GGG-N CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGCG GGC-A-G-C- UA-GCU-G(G 2881 -CAA)CAGC- ---------- AU-GCUAA-U CUCUA-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-CGGGGUC- (UGCANC-U- C)-GACCCCG -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sph.thalp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingobacterium thalpophilum.. ACCESSION No information KEYWORDS No information. SOURCE Sphingobacterium thalpophilum. ORGANISM Sphingobacterium thalpophilum. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Yano,I., Hashimoto,Y., Ezaki,T. and Stackebrandt,E. TITLE Flavobacterium ogurii sp. nov. and flavobacterium paraogurii sp. nov., two bright-orange bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67851|g887441 BASE COUNT 241 a 199 c 278 g 185 t 3473 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GGAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------C CAUCGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCAA UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGAG- CAA--CCU-G C-CUCC---A -UCAG-G-GG 421 -GAU-AG-CC U--------- ------CU-- C(-GAAA-)G -AGAG-A--U UAACACC-GC 481 AU-AAC---- ---------- -------A-U AA-U--A-UU ---CCG-(-- --------GC 541 AU-------- -)-CGG---G AG-AU----U AU--UAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GAU---- 661 ----GGAG-- AUG---G-|G CUCGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AG-G-GG| -C-UCU--(G -AGA)-GGAG ----AA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GGA A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-GU-CC 1021 --GG-GAA-- UA-AACC-UC --CUU-A--( -----CGAG- ---------) --UA-GG-GA 1081 ---------- -------G-C U-GA-AUGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UA-C GG-UGG-C(- UC-A)A-CCA -UC-G-CAG- 1321 -UGCC-UUUG A-UAC-UGAC G-GGCUU-GA AUC-----CA U-AU-GAUGU GGG-C|GGAA 1381 UA-AGACAA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCUUAG- AACU-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUA-- ---------- ---------- ---------A 1501 GCU--GG-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -AU-GU-UGG -C-------- -G-------- 1681 -(AUA-GA)C AN-------- ---------- ---------- ---------- -GCCAG-CGU 1741 CC--CA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-A.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.3-EN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.3 ENV.BDA-14_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.3 ENV.BDA-14_SUBGROUP. ORGANISM 2.7.2.3 ENV.BDA-14_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5511 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5511.. ACCESSION No information KEYWORDS No information. SOURCE clone 5511. ORGANISM clone 5511. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89329 BASE COUNT 65 a 53 c 72 g 45 t 4141 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( ...AAC-GG) UC-GCACC-A A|-GGU-CA- CGA------- -----UA-CA 781 U-AGGG-GG| -U-UCU--(G -AGA)-GGUA ----GU-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(-ACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G NC(C-UC-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- GA-AACC-CC --UGG-A--( -----UGCG- ---------) --UU-AG-GG 1081 ---------- -------G-C U-GA-CGGU- A-CUA-U-AU G-AA--UAAG G......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.52a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 52a.. ACCESSION No information KEYWORDS No information. SOURCE clone 52a. ORGANISM clone 52a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89296 BASE COUNT 56 a 49 c 63 g 43 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UA-CA 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGAGGA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GG-GAAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UC-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-A- 1021 -UAG-GAA-- GA-AACC-CC --UGA-A--( -----UGCG- ---------) --UU-CG-GG 1081 ---------- -------GCU G-CA-CGGU- A-CUA-U-AU G-AA...... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11938 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 71 a 32 c 64 g 62 t 4147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AA- 1261 U-UU-AAG|U CAG---UGGU G-AAA-GC-C UG-CAG-C(- UU-A)A-CUG -UA-G-AAU- 1321 -UGCC-AUUG A-AAC-UGAA U-UUCUU-GA AUA-----UA A-UU-GAAGU AGG-C|GGAA 1381 UA-UGACAU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-UCAUAG- AACA-CCAA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------G 1501 UUA--GU-AU UGCGCU-AUG CA-C------ -------GA- A-G....... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.4-SA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.4 SAPROSPIRA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.4 SAPROSPIRA_GROUP. ORGANISM 2.7.2.4 SAPROSPIRA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.8911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 8911.. ACCESSION No information KEYWORDS No information. SOURCE clone 8911. ORGANISM clone 8911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89345 BASE COUNT 57 a 52 c 61 g 40 t 4166 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- ------U-GA 781 U--GCA-UG| -GACGU--(G -AGA)-GCGU ----GA-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GC-CC-(GCA A)-GGG-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-C C-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUU--AU-UA 1021 --GG-GAA-- GA-ACGA-CC --UUC-A--( -----UUAA- ---------) --UG-AG-GG 1081 ---------- -------U-G U-GA-CCNU- A-CCU-A-AA G-AA--UA.. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4611 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4611.. ACCESSION No information KEYWORDS No information. SOURCE clone 4611. ORGANISM clone 4611. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89319 BASE COUNT 58 a 49 c 63 g 41 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UG--C 781 --AU-G-GG| -G-UCU--(G UAGA)-GNGU ----GA-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-A-CAAU-- GC-CC-(GCA A)-GGG-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-UA 1021 --GG-GAA-- GA-ACGA-CC --UUC-A--( -----UUAA- ---------) --UG-AG-GG 1081 ---------- -------U-G U-GA-CGGU- A-CCU-A-AA G-AA--NAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.7011 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 7011.. ACCESSION No information KEYWORDS No information. SOURCE clone 7011. ORGANISM clone 7011. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89335 BASE COUNT 66 a 55 c 69 g 51 t 4135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ....UUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCG-AU- CUA------- ---------- 781 U-AG-G-GU| -G-NGU--(G -AGA)-GNGU ----GG-A-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -C-A-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-UA 1021 --GG-GAA-- GA-AAAA-UU --ACC-GG-( ----GUUUA- ---------) -CCU-GU-AA 1081 ---------- -------C-U G-AC-CGUC- A-CCU-A-AA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg32 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10944 library_source= marine snow associated BASE COUNT 363 a 311 c 417 g 306 t 2979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACG- UAA--CCU-A C-CUUC---A -AGAG-A-GG 421 -GAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UC 481 AU-GGU---- ---------- -------A-U CA-U--A-AG ---AUC-(-- --------GC 541 CU-------- -)-GAU---C UA-AU----G AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----GAAG-- AUG---G-|G CGUGC----- -GU|----UC U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AG- CGA------- -----UA-GA 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GG-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-U-AG-G-A U-GAC--G-G CC(--UC-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-UU 1021 --GG-GAA-- GA-AACC-CU --GGG-A--( -----UUUA- ---------) --UC-CC-GG 1081 ---------- -------G-C U-GA-CGGU- A-CCA-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 U-GU-AAG|U CAG---AAGU G-AAA-GC-U CA-CAG-C(- UU-A)A-CUG -UG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGCG C-GACUA-GA AUU-----AG G-UU-GAGGU UGG-C|GGAA 1381 UG-UGACAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCAUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACUG-- ---------- ---------- ---------G 1501 ACC--UA-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--UA-CU-- -------C|G -AU-GU-GUG -A-------- ---------- 1681 -(-AA-UA)- ---------- ---------- ---------- ---------- -UUGCG-CAU 1741 CU--AA---- --GG-(GAA- ---A)C-CG- UUAA-GUAAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAU-GG|--- -------A-U ---UUAG--- -AC----CGU 1981 -UCC-U--(- GAAA-)-GGG -A-ACUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G---| CUG-AA-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- U-AGG-AA-G A-CU-G-CCG --GC(-G--U AA)-GCC-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-GG -UA--CAGAG GGU-C-G-C- GA-AGC-N(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CUCAU-AAAG -CC-C-UUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GC-CGG- GN-GU-GCCU -GAA-G-AUG 3121 G-U------- -GA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-AU-CU A......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg41 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10945 library_source= marine snow associated BASE COUNT 365 a 305 c 417 g 303 t 2986 others ORIGIN 1 .......... .......... .......... ...ACCGUUU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGA-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C A--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------U- -)SU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUACG- UAA--CCU-A C-CUUC---A -AGAG-A-GG 421 -GAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UC 481 AU-GGC---- ---------- -------A-U CA-U--A-AG ---AUC-(-- --------AC 541 CU-------- -)-GGU---C UA-AU----G AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----GAAN-- AUG---G-|G CGUGC----- -GU|----UC U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AG- CGA------- -----UA-GA 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GG-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG--C-(GAA A)-GCC-UGA UCCA|-GCCA UUCC-GCCGU 961 G-U-AG-G-A U-GAC--G-G CC(--UC-U- -G)GG-UUGU AAA--CUAC| UUUU-AU-UU 1021 --GG-GAA-- GA-AACC-CU --GGG-A--( -----UUUA- ---------) --UC-CC-GG 1081 ---------- -------G-C U-GA-CGGU- A-CCA-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 C-GU-AAG|U CAG---AAGU G-AAA-GC-U CA-CAG-C(- UU-A)A-CUG -UG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGCG C-GACUA-GA AUU-----AG G-UU-GAGGU UGG-C|GGAA 1381 UG-UGACAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCAUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGACUG-- ---------- ---------- ---------G 1501 ACC--UA-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--UA-CU-- -------C|G -AU-GU-GUG -A-------- ---------- 1681 -(-AA-UU)- ---------- ---------- ---------- ---------- -UUGCG-CAU 1741 CC--AA---- --G--(---- ----)G-CG- UUAA-GUAAG C|C|A-CCU- --GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAU-GG|--- -------A-U ---UUGG--- -AC----AAU 1981 -UUC-U--(- GAAA-)-GGA -A-AUCU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G---| CUG-AA-UUC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGG-AA-G A-CU-G-CCG --N-(-G--U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-GG -UA--CAGAG GGU-C-G-C- GA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CUCAU-AAAG -CC-C-UUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -CAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GNG-NGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACNGNCN- GUC-AAG--- --CNA-UGGA A--GN-NGG- G......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3311 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3311.. ACCESSION No information KEYWORDS No information. SOURCE clone 3311. ORGANISM clone 3311. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89312 BASE COUNT 69 a 60 c 74 g 51 t 4122 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-G-GG| -G-C----(G -AGA)-GCGU ----GA-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---CU-A 901 ACC-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-AG-G-A U-GAA--U-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UUUU-AG-AU 1021 --AG-GAA-- GA-ANCC-CU --UGG-A--( -----UUUA- ---------) --UC-CG-AG 1081 ---------- -------G-N U-GA-CGGU- A-CUA-U-CA G-AA---AAG ---------C 1141 -A........ .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1019 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBT1019. str. SBT1019. ACCESSION No information KEYWORDS No information. SOURCE str. SBT1019. str. SBT1019. ORGANISM str. SBT1019. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84463|g871584 isolate_name= SBT1019 BASE COUNT 101 a 87 c 129 g 80 t 3979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGG-A -GGC-UN--A AUAC-AUGCA A-GUC-GAAC 121 G--GG-AA-U A--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUA-GC (--UU----- ---------- ---------- 241 --------C- -)GG-UUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- UAU|-UC--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACG- CAA--UCU-A C-CUUC---A -AGAG-G-GG 421 -GAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GC 481 AU-AGU---- ---------- -------U-C UG-C--G-AU ---GAU-(-- --------GC 541 AU-------- -)-AUU---G UA-GC----A GA--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----GAAG-- AUG---A-|G CGUGC----- -GU|----CU U--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AA-G-GG| -G-CGU--(G -AGA)-GCGU ----GG-C-- CCC-U|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-C-UU-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UUGU AAA--GAGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1082 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1082. str. SBR1082. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1082. str. SBR1082. ORGANISM str. SBR1082. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84513|g871634 isolate_name= SBR1082 BASE COUNT 98 a 81 c 128 g 81 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... NAGC-GGA-A -UGG-UU--A ACAC-AUNCA A-GUC-GAGC 121 G--------- -----GUA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUG-GU (--UU----- ---------- ---------- 241 --------CG -)GC-CAUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACA- UGA--CCU-G C-CUGU---C -AGAA-G-GG 421 -GAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--U UAAUACC-CU 481 AU-GGU---- ---------- -------A-U UG-A--U-GU ---UA--(-- --------UA 541 GA-------- -)--UG---A UA-UC----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--CUG---- 661 ----ACAG-- AUG---G-|A UGUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GG-U-- CCC-C|C-AC -ACGGG-U-U 841 (CUGA-GA-C ACG)--GACC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUCUU U-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-NAA--G-G UC(U-UC--- -G)GA-UUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hal.hydros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haliscomenobacter hydrossis. ACCESSION No information KEYWORDS No information. SOURCE Haliscomenobacter hydrossis. ORGANISM Haliscomenobacter hydrossis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58790 BASE COUNT 366 a 310 c 434 g 324 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUACUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -GGC-UU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACG- CAA--UCU-G C-CCUU---C -AGUG-A-GG 421 -AAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U UN-U--U-UG ---AUC-(-- --------GC 541 AU-------- -)-GGU---Y RG-AC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--CUG---- 661 ----AAGG-- AUG---A-|G CGUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GGC-NN- CGA------- -----UC-AG 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GA-C-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A U-UAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUUC| UUUU-GC-UU 1021 --GG-GAA-- GA-AAUC-UG --GAC-A--( -----UUUA- ---------) --UG-UG-CA 1081 ---------- -------G-U U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGNNN-N) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CAG---AGGU G-AAA-GC-U AG-CAG-C(- UN-A)A-CUG -UU-A-AAU- 1321 -UGCC-UUUG A-UAC-UGUC A-GACUU-GA AUC-----AG G-UU-GAGGU AGG-C|GGAA 1381 UG-UGACAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-UCAUAG- AACA-CCAA- 1441 -U-U-GC(-G UA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCU--UG-AA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU U--AA-CU-- -------C|G -AU-AU-UUA -UU-C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GA -GUGAG-UGU 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAA C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GC|--- ---------G ---AGUG--- -CC----GAU 1981 -UCC-U--(- GAAA-)-GGG -A-AUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-AA-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-GAA-UA-G A-CU-G-CCG --GC(-G--U AA)-GCN-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG GGU-C-G-C- UA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-NCCAA-U CCCAG-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGGAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GG-GU-GCCU -GAA-G-AUG 3121 G-U------- -GA-CUU--- ---------- ---------- -----(---- -UACA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGA------ G-CU-AU-CU A-AGGU-AAA ACC-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK206 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK206.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK206. ORGANISM clone SMK206. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78642|g509483 BASE COUNT 91 a 84 c 111 g 72 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ........GC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAC-- CAA--UCU-G C-CCUU---C -AGUG-A-GG 421 -AAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UC 481 AU-AAC---- ---------- -------A-U UG-U--U-UG ---AUC-(-- --------GC 541 AU-------- -)-GGU---U AG-AC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--CUG---- 661 ----AAGG-- AUG---A-|G CGUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GA-C-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UCCC-GC-GU 961 G-A-AG-G-A U-UAA--G-G CC(--UA-U- -G)GG-UUGU AAA--C...| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sap.grandi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saprospira grandis. ACCESSION No information KEYWORDS No information. SOURCE Saprospira grandis. ORGANISM Saprospira grandis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58795 BASE COUNT 394 a 324 c 443 g 318 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUCAUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACA- CAA--UCU-G C-CUUC---A -UCAG-G-GG 421 -GAA-AG-UC A--------- ------CU-- G(-GAAA-)C -GGUG-A--A UAAUCCC-GC 481 AU-ACA---- ---------- -------A-C UC-U--U-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C AU-AG----A GU--AAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAU---- 661 ----GAAG-- AUG---A-|G UGUGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- CGA------- -----UC-AG 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GA-U-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GGCAAU-- GG-AC-(GGA A)-GUC-UGA CCCA|-GCCA UGCC-GU-GU 961 G-C-GG-G-A A-GAA--G-G CC(C-UU-U- -G)GG-UUGU AAA--CCGC| UUUU-AU-CU 1021 --AG-GAA-- GA-AUGG-CC --CUG-A--( -----UUCA- ---------) --UC-AG-GG 1081 ---------- -------NAG A-GA-CGGU- A-CUA-G-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -CU-GGGU|U UAAA-GGGU- ACG-UAG-GC -G|-GU-UC- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UG-U CG-GAG-C(- UC-A)A-CUU -CG-A-ACU- 1321 -UGCA-UUUG A-AAC-UGUU G-AACUU-GA AUU-----AG G-UG-GAAGU GUG-C|GGAA 1381 UG-UAUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-AUAUAG- AACA-CCAA- 1441 -U-A-GC(-G AA-G)GCAG- -CACACUA-- ---------- ---------- ---------C 1501 GCU--UU-GA UUGACG-CUG AG-G------ -------UA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--AA-CU-- -------G|G -AU-AU-UUU -CA-C----- ---------- 1681 -(GAG-UG)A ---------- ---------- ---------- --------GU -GGGAG-UGU 1741 CU--GA---- --GG-(GAA- ---A)C-CA- UUAA-GUUAG C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-NC-UCG AAC-GC|--- -------U-A ---GAUG--- -AA----UAU 1981 -UGG-G--(- GAAA-)-CUU -A-AUAG--- A--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAU-CU-AGU |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCU --CC(-G--U AA)-GGA-GU -GAGG-A-AG 2761 G-AA-GGG-A CG-ACG--UN -N-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CC -UA--CAGAG GGC-A-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CUCAG-AAAG -GG-C-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGG A--GU-CNN- NN-GU-GCCU -GAA-G-AUG 3121 G-U------- -GA-CCU--- ---------- ---------- -----(---- -UACC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-AU-CU A-GGGU-AAA CCU-GG-UG- ACN-AGGN-C 3301 .......... ..NA-CAAGG NAGCC-G... .(.....).. .......... GAAUACCUCC 3361 UUUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2044 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2044. str. SBR2044. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2044. str. SBR2044. ORGANISM str. SBR2044. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84582|g871703 isolate_name= SBR2044 BASE COUNT 103 a 80 c 124 g 84 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-N -GGC-UU--A AUAC-NUGCA A-GUC-UAAC 121 G--GG-AA-U AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------UA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUA|UUU--C AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUACN- CAA--CCU-A C-CUUU---C -AGAG-G-GG 421 -GAU-AG-CA U--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUACC-GC 481 AU-AGU---- ---------- -------U-U UG-C--G-AG ---GUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GC----A AA--UAAA-- ---GC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--C- G--CUG---- 661 ----AGAG-- AUG---G-|G UGUGC----- -GU|----AU G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|C-AC -ACGGG-U-A 841 (CUGA-GA-C ACG)--GACC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GGA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CG(C-UC-U- -G)CG-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ML466 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ML466. str. ML466. ACCESSION No information KEYWORDS No information. SOURCE str. ML466. str. ML466. ORGANISM str. ML466. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28798|g469502 isolate_name= ML466 BASE COUNT 97 a 86 c 94 g 83 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(...AA-)U -UGGG-AUUU AAAAACA-UC 481 UCUAAA---- ---------- -------A-U CC-C--A-AG ---GGG-(-- -------UGG 541 CC-UU----- -)-CCC---U UC-AUU---G AU--AAAA-- ---GA----- ---------- 601 --(------- ---AUUU--- ---)------ ---------| -----U--C- U--CUU---- 661 ----GAAG-- AUG---G-|G CGUGC----- -CC|----CU G--AUUA-G- GUA-G---UU 721 GU-UG-AG-( UU-AAC-GG) -C-UCACC-A A|-CCC-AA- CGA------- -----UC-AG 781 U-AA-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-U|C-AC -ACGGC-C-A 841 (CUGA-GA-C ACG)--GGCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-CU 1021 --GG-GAC-- GA-AAUC-AC --CUU-U--( -----UUCU- ---------) --AA-GG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCA-G-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GU.( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MF158 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. MF158. str. MF158. ACCESSION No information KEYWORDS No information. SOURCE str. MF158. str. MF158. ORGANISM str. MF158. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28796|g469500 isolate_name= MF158 BASE COUNT 124 a 113 c 130 g 88 t 3921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-...CA A-GUC-GUGG 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--AC----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-CC--G ACCG-CCAA- 361 -A-CG-GG-U GCGG---AAC -AC-GUACG- CAA--CCU-U C-CUUC---A -AGAG-A-UG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACA-UC 481 GU-AAA---- ---------- -------A-U CA-C--A-GG ---GUG-(-- --------GC 541 AU-------- -)-CAC---C UC-AU----G AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--CUU---- 661 ----GAAG-- AUG---G-|G CGUGC----- -GC|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UC-AG 781 U-AA-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-CU 1021 --GG-GAC-- GA-AAUC-AC --CUU-U--( -----UUCU- ---------) --AA-GG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCA-G-AC G-AA--UAAG ---------C 1141 -ACCGGCC-A AC-CC-GUG( AUU--CGG.. .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.sancti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter sancti. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter sancti. ORGANISM Flexibacter sancti. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62795 BASE COUNT 407 a 318 c 414 g 319 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-GCAA- 361 -A-CG-GG-U GCGG---AAC -AC-GUACG- CAA--CCU-U C-CUUC---A -AGAG-A-UG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACA-UC 481 GU-AAA---- ---------- -------A-U CA-Y--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UA-AU----G AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--CUU---- 661 ----GAAG-- AUG---N-|G CGUGC----- -GC|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AA-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UCGU AAA--CUUC| UUUU-AU-CU 1021 --GG-GAC-- GA-AAUC-AU --UCU-U--( -----UUCU- ---------) --AG-GG-AU 1081 ---------- -------G-U U-GA-CGGU- A-CCA-G-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CCG---UGGU G-AAA-UC-U CC-AGG-C(- UU-A)A-CCU -GG-N-AAC- 1321 -UGCC-AUGG A-UAC-UAUA A-AUCUU-GA AUG-----UU G-UG-GAGGU UAG-C|GGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-ACAUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCUA-- ---------- ---------- ---------C 1501 ACA--AA-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -AC-AU-UUG -C-------- -G-------- 1681 -(AUA-UA)C A--------- ---------- ---------- ---------- -GUAAG-UGU 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- -------A-G ---RAUG--- -AC----CGU 1981 -GGG-U--(- GAAA-)-GCU -C-ACUU--- UR-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----UA---| CAY-CU-UGU |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AAA-GA-A A-CU-G-CCG --UC(-G--U AA)-GAC-GC -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -AA--CAAAG GGC-U-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCUAA-U CUCAA-AAAU -CC-U-AUC- UCAGUUCGAA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GG-GG-ACCU -GAA-G-UCG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CC-GC-CU A-GGGU-AAA AUC-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.filfor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter filiformis str. FX e 1 ATCC 29495 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter filiformis str. FX e 1 ATCC 29495 (T). ORGANISM Flexibacter filiformis. REFERENCE 1 AUTHORS Gherna,R. and Woese,C.R. TITLE A partial phylogenetic analysis of the "Flavobacter-Bacteroides" phylum: basis for taxonomic restructuring JOURNAL Syst. Appl. Microbiol. 15, 513-521 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29495 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58782 Former RDP Sids: Flx.ele.FX ATCC 29495 (T) = DSM 527 isolate_name= FX e 1 NB: former name Flexibacter elegans str. FX e 1 BASE COUNT 404 a 314 c 409 g 312 t 2937 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~C UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-GCAA- 361 -A-CG-GG-U GCGG---AAC -AC-GUACG- UAA--CCU-U C-CUUU---A -AGUG-G-GA 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACC-CC 481 AU-AAG---- ---------- -------A-U UG-U--G-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U CA-GC----A AU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--CUU---- 661 ----AAAG-- AUG---G-|G CGUGC----- -GG|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UC-AG 781 U-AA-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UC(C-UC-U- -G)GA-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACC-AC --UUU-UA-( -----UUC-- ---------) -UAA-AG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCA-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U CCG---UGGU G-AAA-UC-U CC-GAG-C(- UU-A)A-CUC -GG-A-AAC- 1321 -UGCC-GUGG A-UAC-UAUU A-AUCUU-GA AUA-----CU G-UG-GAGGU UAG-C|GGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-ACAUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCUA-- ---------- ---------- ---------C 1501 ACA--GA-GA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -AC-AU-UUG -C-------- -G-------- 1681 -(AUA-UA)C A--------- ---------- ---------- ---------- -GUAAG-UGU 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGAAGUAC 1801 GAC-N---(G CAA)---G-G UU-GAAACUC -AAA-G.... .......... .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG .(....UA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- -------U-G ---GGGG--- -AC----UGG 1981 -AUC-U--(- GAAA-)-GGG -U-CCUU--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CCG-CC-AGU |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AAA-GA-A A-CU-G-CCG --UC(-G--U AA)-GAC-GC -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -AA--CAAAG GGC-U-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCUAA-U CUCAA-AAAU -CC-U-AUC- UCAGUUCGAA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GU-CGG- GG-GG-ACCU -GAA-G-UCG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GYAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ A-CC-GC-CU A-GGGU-AAA AUC-GG-UA- AUU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.arvensi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga arvensicola. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga arvensicola. ORGANISM Cytophaga arvensicola. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12657|g425716 BASE COUNT 335 a 275 c 352 g 278 t 3136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGG---AAC -AC-GUACG- CAA--CCU-A C-CUUC---A -AGCC-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AAG---- ---------- -------A-A UG-U--G-GA ---CUG-(-- --------NC 541 AU-------- -)-CAN---N CA-NC----A UU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUU---- 661 ----GAAG-- AUG---G-|G CGUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GG- CGA------- -----UC-AG 781 U-AA-C-UG| -G-CGU--(G -AGA)-GCGC ----GN-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CGN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GCA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UUGU AAA--CUNC| UUUU-AU-CU 1021 --GG-GAC-- GA-AACN-CU --UCC-U--( -----CUCA- ---------) --AG-NG-AG 1081 ---------- -------C-U U-GA-CGGU- G-CCA-G-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CCG---UGGU G-AAA-UC-U CU-AAG-C(- UU-A)A-CUU -GG-A-AAC- 1321 -UGCC-AUGG A-UAC-UAUA U-GUCUU-GA AUG-----UU G-UG-GAGGU UAG-C|GGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-ACAUAG- AACU-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCUA-- ---------- ---------- ---------C 1501 ACA--AA-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-NA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -AC-AU-ACG -C-------- -G-------- 1681 -(AUN-CC)N N--------- ---------- ---------- ---------- -GUGUG-UGU 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAAU C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- -------A-G ---UCUG--- -AC----UGA 1981 -UGC-U--(- GAAA-)-GGU -G-NCUU--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CAG-AU-UGU |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--ACU- 2281 AG--UUGC-C AG-CNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGU-GA-A A-CU-G-CCG --UC(-G--U AA)-GAC-GC -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -AA--CAAAG GGC-U-N-C- UC-CCU-G(G 2881 -UAA)CAGG- ---------- CU-GCUAA-U CUCAA-AAAU -CC-C-AUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.R3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. R3. str. R3. ACCESSION No information KEYWORDS No information. SOURCE str. R3. str. R3. ORGANISM str. R3. REFERENCE 1 AUTHORS Cundiff,D.D., Besch-Williford,C., Hook,R.R. Jr., Franklin,C.L. and Riley,L.K. TITLE Detection of cilia-associated respiratory bacillus by PCR JOURNAL J. Clin. Microbiol. 32, 1930-1934 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09452|g555678 isolate_name= R3 BASE COUNT 334 a 278 c 357 g 297 t 3110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...CAUU-AU AAAC-AUAAA ACACC-CAUA 121 U--GC-GC-C GUGC------ ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUG-UA (--GC----- ---------- ---------- 241 --------AU -)UC-CACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G ACCG-GCAA- 361 -A-CG-GG-U GCGU---AAC -GC-GUACA- CAA--CUU-G C-CUUU---G -AGUG-G-AG 421 -CAU-AA-CA C--------- ------CG-- A(-GAAA-)U -UGGU-G--C UAAUUCU-CC 481 AU-AGU---- ---------- -------A-U UG-C--U-GA ---AGG-(-- --------GA 541 GU-------- -)-CCU---U UG-GU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--CUC---- 661 ----GAAG-- AUG---G-|G UGUGC----- -GU|----CC G--AUUA-G- AUA-G---UC 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-G A|-GUC-UA- CGA------- -----UC-GG 781 U-AA-C-UG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CAG-U|C-AC -ACGGA-C-A 841 (CUGA-GA-C ACG)--GGUC -CGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GU-GU 961 G-A-AG-G-A U-GAA--G-A CU(C-UC-A- -G)AG-UCGU AAA--CUUC| UUUU-AU-UU 1021 --GG-AAU-- GA-AAUC--C --CCU-U--( -----UUCU- ---------) --AA-GG-GU 1081 ---------- -------G-U U-GA-CAGU- A-CCA-U-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GUG-CAG-GC -G|-GG-UA- 1261 G-GU-AAG|U CGA---UUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUC -GA-G-AAU- 1321 -UGCA-UUCG A-UAC-UGCC U-AUCUU-GA AUA-----CU G-CG-GAGGU GAG-U|AGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -UC-AGAU-A UG-ACAUAG- AAUU-CCGA- 1441 -U-U-GC(-G AA-G)GCAA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-CU-GGU -UUCAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- -------C-G ---UUGG--- -AC----AUU 1981 -CCC-U--(- GAAU-)-GGG -G-GUCU--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CUG-AC-UGG |---A|A--G 2161 GU-AG-UGCA UG|G-AUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUU A)-GGUGU-A 2221 GG-U-(UUAA -GU)-CCCGC AC-------- CGAG-C--GC AACCC-CC-C |-UU--CUU- 2281 UG--UUGG-C AG-CUA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-GAC-AA-A A-CU-G-ACG --UC(-C--C AC)-GGU-GU -GAGG-A-GG 2761 G-AG-GGG-A UG-AUG--UC -A-AGAC-AU CAU-C-GU-C UUCAU-G-CC -UA--GGGG- 2821 U-ACACAA-G A----UUACA AUAGG-U-GC -UA--CAGCA GGU-C-G-C- GA-CAU-A(G 2881 -CAA)UAUG- ---------- GA-GCUAA-C UCC---AAAA -GC-A-CUC- UCAGUUCGGC 2941 U-UGUAGG.. (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.NIH 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. NIH. str. NIH. ACCESSION No information KEYWORDS No information. SOURCE str. NIH. str. NIH. ORGANISM str. NIH. REFERENCE 1 AUTHORS Schoeb,T.R., Dybvig,K., Davidson,M.K. and Davis,J.K. TITLE Cultivation of cilia-associated respiratory bacillus in artificial medium and determination of the 16S rRNA gene sequence JOURNAL J. Clin. Microbiol. 31 (10), 2751-2757 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11886|g299181 isolate_name= NIH NB: GB seq reverse complemented BASE COUNT 388 a 327 c 437 g 338 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G ACCG-GCAA- 361 -A-CG-GG-U GCGU---AAC -GC-GUACA- CAA--CUU-G C-CUUU---G -AGUG-G-AG 421 -CAU-AA-CA C--------- ------CG-- A(-GAAA-)U -UGGU-G--C UAAUUCU-CC 481 AU-AGU---- ---------- -------A-U UG-C--U-GA ---AGG-(-- --------GA 541 GU-------- -)-CCU---U UG-GU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--CUC---- 661 ----GAAG-- AUG---G-|G UGUGC----- -GU|----CC G--AUUA-G- AUA-G---UC 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-G A|-GUC-UA- CGA------- -----UC-GG 781 U-AA-C-UG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CAG-U|C-AC -ACGGA-C-A 841 (CUGA-GA-C ACG)--GGUC -CGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCCA UGCC-GU-GU 961 G-A-AG-G-A U-GAA--G-G CU(C-UC-A- -G)AG-UCGU AAA--CUUC| UUUU-AU-UU 1021 --GG-AAU-- GA--AAU-CC --CCU-U--( -----UUCU- ---------) --AA-GG-GU 1081 ---------- -------G-U U-GA-CAGU- A-CCA-U-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GUG-CAG-GC -G|-GG-UA- 1261 G-GU-AAG|U CGA---UUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUC -GA-G-AAU- 1321 -UGCA-UUCG A-UAC-UGCC U-AUCUU-GA AUA-----CU G-CG-GAGGU GAG-U|AGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -UC-AGAU-A UG-ACAUAG- AAUU-CCGA- 1441 -U-U-GC(-G AA-G)GCCG- -CUCACUA-- ---------- ---------- ---------U 1501 ACA--GU-UA UUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UA-CU-- -------C|G -AC-GU-UAG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUUAG-CGU 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUC C|C|A-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG AGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GC|--- -------C-G ---GUGG--- -CC----AGU 1981 -CCC-U--(- GAAA-)-GGG -G-GUCU--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CUG-CC-GGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-UU--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-GAG-AA-A A-CU-G-CCG --CC(-G--C AA)-GGU-GU -GAGG-A-GG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGG-U-GC -UA--CAGUG GGU-C-G-C- GA-CAU-A(G 2881 -CAA)UAUG- ---------- GA-GCUAA-U CUCC--AAAA -GC-A-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CUC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--AU-GGG- GU-GU-AUCU -GAA-G-ACG 3121 G-U------- -AG-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGG------ G-CU-GU-CU A-GGGU-AAA ACU-CG-UA- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAG. ......GUAA C(CGU..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD33 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26220|g498422 library_source= unidentified soil bacterium from paddy field BASE COUNT 75 a 63 c 75 g 64 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--AUC- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-GGU-GA-A A-CU-G-CCG --CC(-G--U AA)-GGU--- -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-AG -UA--CAAAG GGU-U-G-C- UA-CCU-G(G 2881 -UGA)CAGG- ---------- AU-GCUAA-U CUCAA-AAAA -CU-U-CUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2061 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2061. str. SBR2061. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2061. str. SBR2061. ORGANISM str. SBR2061. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84595|g871716 isolate_name= SBR2061 BASE COUNT 109 a 89 c 123 g 83 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G GCCG-GCAA- 361 -A-CG-GG-U GCGG---AAC -AC-GUACA- GAA--CCU-U C-CUUC---G -AGCG-G-GG 421 -AAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-CC 481 AU-AGU---- ---------- -------A-C AA-C--G-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUU---- 661 ----GAAG-- AUG---G-|C UGUGC----- -GG|----CU G--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AA-C-UG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAA A)-GUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(C-UC-U- -G)GA-UUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD4 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26191|g498429 library_source= unidentified soil bacterium from paddy field BASE COUNT 82 a 64 c 70 g 63 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CC-A |-UC--ACU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGU-GA-A A-CU-G-CCG --UC(-G--U AA)-GAC-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAAAG AGC-A-G-C- AA-CAC-A(G 2881 -UGA)UGUG- ---------- AA-GCCAA-U CUCAA-AAAA -CG-U-CUC- UCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.ferrugin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium ferrugineum. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium ferrugineum. ORGANISM Flavobacterium ferrugineum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62798 ATCC 13524 = IFO 14992 (T) BASE COUNT 416 a 325 c 423 g 332 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~A UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GUGG 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G ACCG-GCAA- 361 -A-CG-GG-U GCGG---AAC -AC-GUACA- CAA--CCU-U C-CUUU---U -AGUG-G-AG 421 -CAU-AG-CC U--------- ------AA-- G(-GAAA-)C -UUGG-A--U UAAUACU-CC 481 GU-AAC---- ---------- -------A-U AA-U--G-AA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AU----U AU--UAUA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUA---- 661 ----GAAG-- ACG---G-|G UGUGC----- -GG|----CU G--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AA-C-UG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CAG-U|C-AC -ACGGG-C-A 841 (CUGA-GA-C ACG)--GGCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AC-(GAA A)-GUC-UGA ACCA|-GCCA UGCC-GN-GU 961 G-G-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UUGU AAA--CUUC| UUUU-AU-AU 1021 --GG-GAC-- GA-AAAA-GG --GAC-U--( -----UUCU- ---------) --AG-UU-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCA-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -CU-GGGU|U UAAA-GGGA- GCG-UAG-GU -G|-GG-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-UC-U UC-GAG-C(- UU-A)A-CUC -GG-A-AAC- 1321 -UGCC-AUUG A-UAC-UAUC A-GUCUU-GA AUA-----UU G-UG-GAGGU UAG-C|GGAA 1381 UA-UGUCAU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UG-ACAUAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUGGCUA-- ---------- ---------- ---------C 1501 ACA--UA-UA UUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-U-AUGG A--UA-CU-- -------C|G -AC-AU-ACG -CG------- ---------- 1681 -(AUA-CA)C ---------- ---------- ---------- ---------U -GUGUG-UGU 1741 CU--GA---- --GC-(GAA- ---A)G-CA- UUAA-GUAUC C|C|A-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-GCGGG-N -G-U-CC--G 1861 C-A--CA-AG CGGU...... ........GU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GC|--- -------U-G ---GGAG--- -AC----CGU 1981 -GGG-U--(- GAAA-)-GCU -C-ACUU--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CUG-CC-AGU |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-UC--ACU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGU-GA-A A-CU-G-CCG --UC(-G--U AA)-GAC-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-AG -GA--CAAAG AGC-U-G-C- CA-CUU-G(G 2881 -UGA)CAAG- ---------- GA-GCUAA-U CUCAA-AAAC -CU-C-UUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GC-CGG- GU-GU-ACCU -AAA-G-UCG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GC-CU A-GGGU-AAA ACU-GG-UA- AUU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAAUACCUCC 3361 UUUN|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD10 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26197|g498397 (bases 1 to 278) library_source= unidentified soil bacterium from paddy field BASE COUNT 78 a 65 c 72 g 63 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CC-A |-UC--ACU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGU-GA-A A-CU-G-CCG --UC(-G--C AA)-GAC-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-AUG--UC -A-AGUC-AU CAC-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-AG -GA--CAAAG AGC-U-G-C- CA-CUU-G(G 2881 -UGA)CAAG- ---------- GA-GCUAA-U CUUAA-AAAC -CU-C-UUC- UCAGUUCAGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGCAAU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGA-CC U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.5-CY 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.5 CY.DIFFLUENS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.5 CY.DIFFLUENS_GROUP. ORGANISM 2.7.2.5 CY.DIFFLUENS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.aprica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga aprica. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga aprica. ORGANISM Cytophaga aprica. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12655|g431766 BASE COUNT 324 a 261 c 352 g 283 t 3156 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -AC-GUAUA- CAA--CUU-G C-CUUU---A -UCGN-N-GG 421 -AUN--G-CC U--------- ------UG-- A(-GAAA-)U -UCGG-N--U UAAUNCU-CC 481 AU-AGU---- ---------- -------A-U UA-U--A-AN ---NNA-(-- --------GC 541 AU-------- -)-UGC---U UA-AU----A AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAU---- 661 ----AAAG-- AUA---G-|G UAUGC----- -NU|----CC U--AUUA-G- CUA-G---UU 721 GG-UC-AG-( GU-AAC-GG) -C-UGGCC-A U|-GNC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U CC(U-UC--- -G)GG-UUGU AAA--GUUC| UUUU-GU-AU 1021 --GG-GAA-- GA-AACC-NN --NNC----( -----UGCG- ---------) ---N-GN-GU 1081 ---------- -------UCU U-GA-CGGU- A-CCA-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGNA-A) U-A-C-GGAG |-GGUC-C-- 1201 AAA-CGUUGU CC-GGAAUUA -UU-GGGU|U UAAA-UGGU- UCN-CAG-GC -G|-GU-UU- 1261 U-GU-CAG|U CAG---AGGU U-AAA-GA-C CG-GAG-C(- UU-A)A-CUC -CG-A-GUU- 1321 -UGCC-UUUG A-UAC-UGCA A-GACUU-GA AAU-----AC A-UA-UGGGU AGG-C|GGAA 1381 UU-CCUCAU- GUA-GCN(-G UGAAA)-UGC -AC-AGAU-A UG-AGGAGG- AANA-CCGA- 1441 -A-G-UC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUG--UU-AU UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-UGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------C|G -AC-CU-GUG -UN------- -U-------- 1681 -(UGU-AA)C ---------- ---------- ---------- ---------C -AUGCG-GGU 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AGAA-GUUCU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UCG AAU-UC|--- -------G-U ---UUUG--- -AC----CGU 1981 -UCU-A--(- GAGA-)-UAG -N-NNNU--- ---------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAG-AA-UGG |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GCG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUAC-C AG-CNC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-G--U AA)-ACN-NC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-A-GG -GA--CAACG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CUCGA-AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCUAU)-G GCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.arenar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla arenaria str. HJ-1 ATCC 23161 (T). ACCESSION No information KEYWORDS No information. SOURCE Microscilla arenaria str. HJ-1 ATCC 23161 (T). ORGANISM Microscilla arenaria. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23161 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60455 isolate_name= HJ-1 BASE COUNT 379 a 326 c 450 g 308 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UAUACUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CCAC---A -ACAG-G-AG 421 -GAU-AG-CC C--------- ------UC-- G(-GAAA-)C -GAGG-A--U UAAUAUU-CC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---ACU-(-- --------AC 541 CU-------- -)-GGU---A CUAUU----U GU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----GUGG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-CG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-NA- UGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-NNA CCCA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CU(--CU-CG --)GG-UCGU AAA--GUUC| UUUU-AU-AC 1021 --GG-GGA-- GA-A-CA-CU --GCU-A--( -----UGCG- ---------) --UA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- ACG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-GU-U UG-CAG-C(- UU-A)A-CUG -UA-A-AAG- 1321 -UGCC-AUUG A-UAC-UGGU A-AGCUU-GA GUA-----CU G-UA-GAGGU GGG-C|GGAA 1381 UU-CCGCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-CGGAGG- AACA-CCAA- 1441 -A-A-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG U--AA-CU-- -------A|G -GU-GU-GCG -C-------- -G-------- 1681 -(AUA-UA)C A--------- ---------- ---------- ---------- -GUGCG-UGC 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUUAC C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UAG AAU-GC|--- ---------G ---AGUG--- -AC----GUA 1981 -CCG-A--(- GAGA-)-UCG -G-UAUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAC-AA-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-CU--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAG-AG-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCAAU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GU-GU-ACCU -GAA-G-AUG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CC-GU-UU A-GGGU-AAA ACU-AG-CG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.aggre1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter aggregans str. Lewin NN-3 ATCC 23162 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter aggregans str. Lewin NN-3 ATCC 23162 (T). ORGANISM Flexibacter aggregans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23162 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64628 isolate_name= Lewin NN-3 BASE COUNT 377 a 324 c 444 g 302 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~.. .AUACUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NNAC-GC-- UAGC-NGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGN-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UCUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CCAC---A -ACAG-G-AG 421 -GAU-AG-CC C--------- ------UC-- G(-GAAA-)C -GAGG-A--U UAAUAUU-CC 481 AU-AAA---- ---------- -------A-C AG-G--G-GU ---ACU-(-- --------AC 541 CU-------- -)-NGU---A CUAUU----U GU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----GUGG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-CG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-NA- UGA------- -----UG-GG 781 N-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-NNA CCCA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CU(--CU-CG --)GG-UCGU AAA--GUUC| UUUU-AU-AC 1021 --GG-GGA-- GA-ACA--CU --GCU-A--( -----UGCG- ---------) --UA-GC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- ACG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-GU-U UG-CAG-C(- UU-A)A-CUG -UA-A-AAG- 1321 -UGCC-AUUG A-UAC-UGGU A-AGCUU-GA GUA-----CU G-UA-GAGGU GGG-C|GGNA 1381 UU-CCGCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-CGGAGG- AACA-CCNA- 1441 -A-A-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG U--AA-CU-- -------A|G -GU-GU-GCG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------A -GUGCG-UGC 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUUAC C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UAG AAU-GC|--- ---------G ---AGUG--- -AC----GUA 1981 -CCG-A--(- GAGA-)-UCG -G-UAUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAC-AA-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-CN--CUU- 2281 AG--UUGC-C AU-CAN---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAG-AG-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- UA-CCU-G(G 2881 -UAA)CAGG- ---------- AU-GCCAA-U CUCAA-AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCAAU)-G AUG-CGGUG- AAUAC-GUU- CCC-NGA-CC NUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGG A--GU-UGG- GU-GU-ACCU -GAA-G-AUG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CC-GU-UU A-GGGU-AAA ACU-AG-CG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4811.. ACCESSION No information KEYWORDS No information. SOURCE clone 4811. ORGANISM clone 4811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89321 BASE COUNT 53 a 49 c 64 g 45 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .....UC-AU 781 U-AG-G-GG| -G-CCU--(G -NGA)-GGGU ----GA-A-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCU|-GCCA UGCC-GN-GU 961 G-C-AG-G-A A-GAA--G-G NG(U-UC-U- -G)CG-UCGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- UA-ACUC-CC --CCU-A--( -----CGUG- ---------) --UA-GG-GG 1081 ---------- -------G-G U-GA-ACGU- A-CUA-U-AC UUUU--ACAG C......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.difflu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga diffluens str. B1 NCIMB 1402 (T). ACCESSION No information KEYWORDS No information. SOURCE Cytophaga diffluens str. B1 NCIMB 1402 (T). ORGANISM Cytophaga diffluens. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12660|g425719 isolate_name= B1 BASE COUNT 329 a 273 c 360 g 269 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -NC-GUAUA- CAA--UCU-U C-CCUU---A -ACUG-G-AG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -AGUN-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-C UG-C--A-CG ---AUC-(-- --------GC 541 AU-------- -)-GAG---A GA-GC----A GU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AAGG-- AUG---A-|G UAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -N-UCU--(G -AGA)-GGAU ----GA-U-- CCC-N|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUNC| UUUU-AU-AU 1021 --GG-GAA-- GA-AAAA-GG --UCU----( -----UGCG- ---------) ---A-GA-CA 1081 ---------- -------AAC U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANN NNCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GC-CU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-UC-U UA-CAG-C(- UU-A)A-CUG -UG-A-AAG- 1321 -UGCC-AUUG A-UAC-UGGU A-GGCUU-GA GUC-----CG G-UG-AAGGU AGG-C|GGAA 1381 UU-CCUCAU- GUA-GCG(-G UGAUA)-UGC -AU-AGAU-A UG-AGGAAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------U 1501 ACC--GU-UA CUGACG-CUC AU-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GU-GU-UGG -CG-A----- ---------- 1681 -(-UA-GA)- ---------- ---------- ---------- --------UU -GUCAG-CGC 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-U-CC--G 1861 C-U--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAU-GU|--- ---------G ---AGCG--- -AC----GGU 1981 -UCC-A--(- GAAA-)-UGG -A-ACUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CNC-GA-AAC |---A|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-N--GC AACCN-CU-N |-CU--GUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---A(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAC-AG-A A-CU-G-CCU --NC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-C-G-C- UA-CCU-G(G 2881 -CAA)CAGG- ---------- AU-GCCAA-U CUCAA-AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAU)-G GCN-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.difflue 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga diffluens str. Lewin LIM-1 ATCC 23140. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga diffluens str. Lewin LIM-1 ATCC 23140. ORGANISM Cytophaga diffluens. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23140 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58765 ATCC 23140 = LIM 1 = NCIMB 1430 isolate_name= Lewin LIM-1 BASE COUNT 390 a 327 c 436 g 310 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UN -)NU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUA- CAA--UCU-G C-CCUU---A -ACUG-G-AG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -AGUG-A--U UAAUACU-CC 481 AU-AAC---- ---------- -------A-C UG-C--A-CG ---AUC-(-- --------GC 541 AU-------- -)-GAG---A GA-GC----A GU--UAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AAGG-- AUG---A-|G UAUGC----- -GU|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-AA- CGA------- -----UG-UC 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --GG-GAA-- GA-AAAA-GG --UCU----( -----UGCG- ---------) ---A-GA-CA 1081 ---------- -------AAC U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-CAG-GC -G|-GC-CU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-UC-U UA-CAG-C(- UU-A)A-CUG -UG-A-AAG- 1321 -UGCC-AUUG A-UAC-UGGU A-GGCUU-GA GUG-----CG G-UG-AAGGU AGG-C|GGAA 1381 UU-CCUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-AGGAAG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------U 1501 ACC--GU-UA CUGACG-CUC AU-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GU-GU-UGG -CN-A----- ---------- 1681 -(-UA-GA)- ---------- ---------- ---------- --------UU -GUCAG-CGC 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAU-GU|--- ---------G ---AGCG--- -AC----GGU 1981 -UCC-A--(- GAAA-)-UGG -A-ACUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGC-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAC-AG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-C-G-C- UA-CCU-G(G 2881 -CAA)CAGG- ---------- AU-GCCAA-U CUCAA-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CAN- GG-GG-ACCU -GAA-G-CAG 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-UG-UU A-GGGU-UAA ACU-GG-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.6-FL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.6 FLX.FLEXILIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.6 FLX.FLEXILIS_GROUP. ORGANISM 2.7.2.6 FLX.FLEXILIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.serice 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla sericea str. SIO-7 ATCC 23182. ACCESSION No information KEYWORDS No information. SOURCE Microscilla sericea str. SIO-7 ATCC 23182. ORGANISM Microscilla sericea. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23182 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58794 isolate_name= SIO-7 BASE COUNT 392 a 315 c 440 g 326 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NNA UAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCUAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UUAGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -GAU-AG-CU C--------- ------GG-- G(-GAAA-)C -UCGA-A--U UAAUACC-UC 481 AU-GGU---- ---------- -------A-U CA-U--A-AA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U UA-AU----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A U|-GAC-GA- UGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A U-GAC--G-G CC(U-UC-U- -G)GG-UUGU AAA--CUNC| UUUU-CU-AC 1021 --AG-GAA-- GA-AAAA-GC --UUA----( -----UGCG- ---------) ---U-AA-GC 1081 ---------- -------AAU U-GA-CGGU- A-CUG-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCNNNN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CAG---UGGU G-AAA-GC-C CG-CAG-C(- UU-A)A-CUG -CG-G-NAC- 1321 -UGCC-AUUG A-UAC-UGGA G-AGCUU-GA GUA-----CG G-UU-GAAGU AGG-C|GGAA 1381 UU-UAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-AUAAAG- AACA-CCGA- 1441 -U-A-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--GU-NA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- ---------C ---CUUG--- -AC----AGC 1981 -UUU-A--(- GAGA-)-UAG -A-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAA-GG-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CNU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- AA-GCU-G(G 2881 -UAA)CAGC- ---------- AA-GCCAA-U CUCAA-AAAG -UG-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GA-GG-ACCU -GAA-G-AUG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGC------ G-CU-GU-UU A-GGGU-UAA ACC-AG-CG- ACU-AGGG-C 3301 U---NAGUC- NNNA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.tractu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter tractuosus str. Lewis BA-3 ATCC 23168 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter tractuosus str. Lewis BA-3 ATCC 23168 (T). ORGANISM Flexibacter tractuosus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23168 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58789 isolate_name= Lewis BA-3 BASE COUNT 384 a 313 c 438 g 319 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUA UAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCUAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UUAGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---U -ACAG-G-GG 421 -GAU-AG-CU C--------- ------GG-- G(-GAAA-)C -UCGA-A--U UAAUACC-CC 481 AU-GGU---- ---------- -------A-U CA-U--A-AG ---AUC-(-- --------GC 541 AU-------- -)-GGU---C UA-AU----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A U|-GGC-GA- UGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAG A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A U-GAC--G-G CC(U-UC-U- -G)GG-UUGU AAA--CUAC| UUUU-CU-AC 1021 --AG-GAA-- GA-AAAA-GC --UUA----( -----UGCG- ---------) ---U-AA-GC 1081 ---------- -------AAU U-GA-CGGU- A-CUG-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCNNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CAG---UGGU G-AAA-GC-C CG-CAG-C(- UU-A)A-CUG -UG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGGA G-AGCUU-GA GUA-----CG G-UU-GAAGU AGG-C|GGAA 1381 UU-UAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-AUAAAG- AACA-CCGA- 1441 -U-A-GC(-G UA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GCC--GU-NA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- ---------C ---CUUG--- -AC----AGC 1981 -UUU-A--(- GAGA-)-UAG -A-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAA-GG-UGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CN-A |-UU--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- GA-GCC-G(G 2881 -CAA)CGGC- ---------- AA-GCCAA-U CUCAA-AAAG -UG-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGG A--GU-UGG- GA-GG-ACCU -GAA-G-AUG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGC------ G-CU-GU-UU A-GGGU-UAA ACC-AG-CG- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.furves 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla furvescens str. TV-2 ATCC 23129. ACCESSION No information KEYWORDS No information. SOURCE Microscilla furvescens str. TV-2 ATCC 23129. ORGANISM Microscilla furvescens. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23129 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58792 isolate_name= TV-2 BASE COUNT 373 a 316 c 452 g 312 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~NUA UAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GANC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-A C-CUAU---U -ACUG-A-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGN-A--U UAAUACC-UC 481 AU-GGU---- ---------- -------A-U CA-C--U-UG ---AUG-(-- --------GC 541 AU-------- -)-CUN---A AG-GU----G AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AUAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---AU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A U|-GGC-AA- UGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|N-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(U-UC-U- -G)GG-UUGU AAA--CUGC| NUUU-CU-AC 1021 --AG-GAA-- GA-AAAA-GC --CCU----( -----UGCG- ---------) ---A-GG-GA 1081 ---------- -------AAU U-GC-CGGU- A-UUG-U-AG G-AA--UAAG ---------C 1141 -ACCGGCN-A ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GG-AU- 1261 U-UU-AAG|U CAG---UGGU G-AAA-GC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGGA A-UCCUU-GA AUU-----CA G-UU-GAGGU AGG-C|GGAA 1381 UU-GAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-AUCAGG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GCU--UG-AA UUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -CU-GU-UGG -C-------- -G-------- 1681 -(AUA-CA)C A--------- ---------- ---------- ---------- -GUCAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UAG AAU-GC|--- ---------G ---AGUG--- -CU----AUC 1981 -UGC-A--(- GAGA-)-UGC -G-GAGU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAC-GA-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CN-A |-UU--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-GG -UA--CAGAG GGU-C-G-C- UA-CAC-A(G 2881 -CAA)UGUG- ---------- AU-GCCAA-U CUCAA-AAAG -CC-C-UNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCNG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GU-AU-GCCU -GAA-G-AUG 3121 G-U------- -UG-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGC------ G-CU-GU-UU A-GGGC-AGA AUC-AG-GG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY51 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY51.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY51. ORGANISM clone PLY51. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13160|g535413 BASE COUNT 246 a 174 c 232 g 202 t 3522 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAA -GAAC-GC-- UAGC-GGC-A -GGC-CU--U AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AUG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUU---A -ACUG-G-GG 421 -CAU-AG-CU C--------- ------GA-- G(-GAAA-)C -UCGA-A--U UAAUUCC-CC 481 AU-AGU---- ---------- -------A-C AU-UC-U-AU U--AUC-(-- --------UC 541 AU-------- -)-GAU---A UA-AA----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----AAAG-- AUG---G-|A CAUGC----- -GU|----CU G--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- CGA------- -----UC-AG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GUC--G-A CC(--UA-UG --)GG-UUGU AAA--CUGC| UUUU-AU-AU 1021 --AG-GAA-- G--AAAA-CA --CCU----( -----UGCG- ---------) ---A-GA-GA 1081 ---------- -------AAC U-GA-CGGU- A-CUA-U-AU GAAA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUU-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGU|U UAAA-GAGA- GUG-UAG-GU -G|-GU-GU- 1261 U-AU-AAG|U CAG---UUGU G-AAA-UC-C UA-CUG-C(- UC-A)A-CUA -CA-G-CUC- 1321 -GUAC-UGUA G-AAC-UGGC A-UUCUU-GA GUA-----CU U-UG-GAGGU AAG-U|GGAA 1381 UU-UUAUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-AUAAGG- AACA-CCAA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC UACCA-CUCC -------G|A -AU-GU-UAA -GCGA----- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- --------CU -GUUAG-CGU 1741 CC--AA---- --GC-(UAA- ---A)G-CG- UUAA-GUGAG C|C|A-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B273 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B273. str. B273. ACCESSION No information KEYWORDS No information. SOURCE str. B273. str. B273. ORGANISM str. B273. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13131|g495578 isolate_name= B273 BASE COUNT 203 a 168 c 211 g 162 t 3632 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... UCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUA---U -ACUG-G-GG 421 -CAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CUGG-A--U UAAUACC-CC 481 AU-GGU---- ---------- -------A-C AU-A--U-UG ---AGG-(-- --------GC 541 NU-------- -)-CUG---A UA-UA----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ---UUAAU-- AUG---G-|G CAUGC----- -GU|----CU .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---AU-A 901 GGG-AAAAUU G-GGAAAU-- GG-UC-(GGA A)-AAC-UAA CCAA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CC(--UC-U- -G)GG-UUGU AAA--CUGC| UUUU-AU-CU 1021 --GG-GAA-- GA-AAAA-GG --CCA----( -----UGCG- ---------) ---U-GG-CN 1081 ---------- -------AAU U-GC-CGGU- A-CCA-G-AU G-AA--UGAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ....AUGGU- GUA-GCG(-G UAAAA)-UGC -AU-AGAU-A CC-AUCAGG- AACA-CCGA- 1441 -U-A-GC(-G AA-A)GCAU- -UGUACUG-- ---------- ---------- ---------G 1501 CCA--AC-AA CUGACG-CUG AG-G------ -------CA- C-NAAA-GU- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-A AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -CU-GU-UAU -GG-A----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------UC -UGUAG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUUC 1801 GCC-G---(G CAA)---C-G GU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .UGGC-G-CA -UA--CAGCG GGU-C-G-C- GA-GCC-G(G 2881 -UAA)CGGU- ---------- AA-GCCAA-C CUCUA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCNNC-U- C)-GACCUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-CGN--- --CCA-UGGA A--GU-CGG- GU-AG-ACCU -GAA-G-ACG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GU-UU A-GGGU-AGA ACNCGG-UA- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cyb.marinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cyclobacterium marinus str. WH-A. ACCESSION No information KEYWORDS No information. SOURCE Cyclobacterium marinus str. WH-A. ORGANISM Cyclobacterium marinus. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62788 Former RDP Sids: Flc.marinu isolate_name= WH-A; Raj NB: former name Flectobacillus marinus BASE COUNT 381 a 329 c 450 g 305 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NC UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GUAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUCAU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUGU---U -ACAG-G-GA 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUAUC-CC 481 AU-AGU---- ---------- -------A-U AA-A--U-UU ---ACU-(-- --------GC 541 AU-------- -)-GGU---A UA-UU----U AU--UAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--U- G--GUA---- 661 ----ACAG-- ACG---G-|G CAUGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GAG A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAC--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUGC| UUUU-AU-CU 1021 --GG-GAA-- GA-AAAA-GC --CCU----( -----UGCG- ---------) ---A-GG-GA 1081 ---------- -------AAU U-GC-CGGU- A-CCA-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGNUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CAG---CGGU G-AAA-GU-U CU-CGG-C(- UC-A)A-CCG -AG-A-GAC- 1321 -UGCC-GUUG A-UAC-UGGU U-AGCUU-GA GUU-----AU G-GA-GGGGU ACA-U|GGAA 1381 UU-UAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-AUAAGG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAU- -UGUACUG-- ---------- ---------- ---------G 1501 CCA--UA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-UU-ACA -UU-AC---- ---------- 1681 -(-GU-A-)- ---------- ---------- ---------- -------GUA -AUUUG-AGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- UUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-NC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -UAC-A--(- GAGA-)-UGU -A-UCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUC- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GAC-AA-G A-CU-G-CCC --GC(-G--C AA)-GCG-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGCG GGU-A-G-C- GA-CAC-G(G 2881 -CAA)CGUG- ---------- AA-GCCAA-C CUCUA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-C- C)-GACCCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GU-AG-ACCU -GAA-G-ACG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GU-UU A-GGGU-AGA ACC-GG-UA- ACU-NGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sps.lingua 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirosoma linguale str. Mc1 ATCC 23276. ACCESSION No information KEYWORDS No information. SOURCE Spirosoma linguale str. Mc1 ATCC 23276. ORGANISM Spirosoma linguale. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23276 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62789 isolate_name= Mc1 BASE COUNT 349 a 316 c 459 g 299 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUG-CC (--CU----- ---------- ---------- 241 --------CG -)GG-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCAA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAAG- CAA--CNU-N C-CUCA---U -ACUG-G-GG 421 -GAU-AG-CC C--------- ------NG-- C(-GAAA-)G -CUNG-G--N UAAACCN-NC 481 AC-GGU---- ---------- -------C-C CA-C--G-GA ---GUC-(-- --------AC 541 CN-------- -)-NNU---U UG-GU----G GG--UAAA-- ---CA----- ---------- 601 --(------- ---UUGA--- ---)------ ---------| -----U--G- G--GUA---- 661 ----UGAG-- AGG---G-|G CUUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UC-AG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----UG-G-- CCC-C|C-AC -AUGGG-U-A 841 (CUGA-GA-U ACG)--GACC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-AG-(GCA A)-CUC-UNA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CG(C-UC-A- -G)CG-UUGU AAA--CUNC| NUUU-AU-UG 1021 --GU-GAA-- GA-ACAG-CA --GUC-C--( -----UGCG- ---------) --GG-AU-UG 1081 ---------- -------U-G U-GA-CGGU- A-GCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGN- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CUG---AUUU G-AAA-GC-A GG-CGG-C(- UU-A)A-CCG -UC-U-GAU- 1321 -GUGG-UUGG A-AAC-UGAA C-AACUU-GA AUG-----GG N-UG-GCGGU AGC-C|GGAA 1381 UG-GGUCAU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UG-ACCCGG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCNG- -NCUACUA-- ---------- ---------- ---------C 1501 GAC--UU-GA UUGACA-CUG AG-G------ -------CA- C-GAGA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -CU-GU-GUG -CG-U----- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- --------AC -GUGCG-UGG 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAU C|N|A-CCU- G-GGGAGUAC 1801 GCU-G---(G CAA)---C-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GU|--- ---------G ---CGUG--- -AA----GGG 1981 -CUC-A--(- GAAA-)-UGG -G-UCUG--- UG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CA---| CAC-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-UA-G A-CU-G-CNU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-GG-GGG-N CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CNUAC-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGCG GGU-A-G-C- GA-GGG-G(G 2881 -UAA)CCCG- ---------- GA-GCCAA-U CUUGU-AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCNA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCNAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGA-CC UUGUA----C 3061 NCACCGCCC- GUC-NAN--- --CCA-UGGG A--AU-UGG- GG-GG-ACCU -GAA-G-GUC 3121 G-G------- ---------- ---------- ---------- -----(---U UUAAGCG--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- C-CG-GG-CA A-GGGU-NAA CUC-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.ele.NZ 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter elegans str. NZ-1 ATCC 23112 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter elegans str. NZ-1 ATCC 23112 (T). ORGANISM Flexibacter elegans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23112 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58783 ATCC 23112 (T) = TCC 23180 = IFO 15055 = ATCC 19594 isolate_name= NZ-1 BASE COUNT 370 a 318 c 438 g 306 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UUUACUAUGG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-GAN -NAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- CAA--UCU-A C-CUCU---U -ACUG-G-GN 421 -NAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 GU-AAC---- ---------- -------A-A GU-U--G-A- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- UU-GA----U UU--UAAAA- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UGUAG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CCC-C|N-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GGCAAU-- GG-AC-(GAG A)-GUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UC-U- -G)GG-UUGU AAA--CUNN| NUUU-CU-AC 1021 --GG-GAA-- GA-AAAA-GC --UCU----( -----UGCG- ---------) ---G-GA-GU 1081 ---------- -------AAU U-GA-CGGU- A-CCG-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC NNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-AU-AAG|U CGU---GGGU G-AAA-UC-C CG-GAG-C(- UU-A)A-CUU -CG-G-AAC- 1321 -UGCC-UGCG A-UAC-UGUG U-AGCUU-GA GUG-----CG G-UA-GAGGA AGG-C|GGAA 1381 UU-GGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-AUCAGN- NNCA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUUCUU-- ---------- ---------- ---------G 1501 GCC--GC-NA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-UGG -C-------- -G-------- 1681 -(AUA-CA)C A--------- ---------- ---------- ---------- -GUCAG-UGA 1741 CU--AA---- --GG-(GAA- ---A)C-CG- AUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---CGUG--- -AA----GGU 1981 -AUU-G--(- GAGA-)-CAA -U-GCCG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAC-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -N-NGUC-AU CAU-G-GC-C CUUAN-G-CC -UA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAACG GGU-A-G-C- UA-CUU-G(G 2881 -UAA)CAAG- ---------- AU-GCCAA-U CUCC--AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GU-GG-ACCU -GAA-G-CCG 3121 G-C------- -AG-G----- ---------- ---------- -----(---- -AUC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AAU------ G-UC-GG-UU A-GGGU-UAA ACC-AG-CG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msc.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microscilla marina str. SIO-8 ATCC 23134 (T). ACCESSION No information KEYWORDS No information. SOURCE Microscilla marina str. SIO-8 ATCC 23134 (T). ORGANISM Microscilla marina. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23134 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58793 isolate_name= SIO-8 BASE COUNT 383 a 304 c 424 g 314 t 2951 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- NGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-A C-CUCU---U -ACUG-G-GG 421 -AAU-AA-CU U--------- ------CG-- C(-GAAA-)G -UGGA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-A AC-G--A-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- AU-UG----U UU--UAAAA- ---G------ ---------- 601 --(------- ---GUUA--- ---)------ ---------| --------C- G--GUA---- 661 ----GGAG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU N-GUCAAU-- GG-AC-(GAG A)-GUC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CG(U-UA-C- -G)CG-UCGU AAA--CUNC| UUUU-AU-AU 1021 --AG-GAA-- GA-AAAG-UU --UUC----( -----UGCG- ---------) ---G-AA-AA 1081 ---------- -------GAU U-GA-CGGU- A-CUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCNNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GA-AG- 1261 C-UU-AAG|U CUU---GGGU G-AAA-UN-C CA-CCG-C(- UC-A)A-CGG -UG-G-AAC- 1321 -UGCC-UGAG A-AAC-UGGG U-UUCUU-GA GUA-----UA G-UU-GAGGU AGC-U|GGAA 1381 UU-GGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-ACCAGG- AACA-CCUA- 1441 -U-U-GC(-G AA-G)GCAA- -GCUACUN-- ---------- ---------- ---------A 1501 GCU--AU-AA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------C|G -CU-GC-UGG -C-------- -G-------- 1681 -(AUA-CA)C A--------- ---------- ---------- ---------- -GUCAG-UGG 1741 CU--AA---- --GG-(GAA- ---A)C-CG- UUAA-GUCAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- ---------G ---AGGG--- -AA----UGU 1981 -ACU-A--(- GAAA-)-UGG -U-ACAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CCC-GA-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--AUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-NGU-CA-G A-CU-G-CCU --GN(-G--C AA)-GCG-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -NA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-A-GA -UA--CAACG GGU-A-G-C- UA-CUU-A(G 2881 -UAA)UAAG- ---------- AU-GCCAA-U CUCC--AAAG -UC-U-UUC- ACAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGG A--GU-UGG- GU-GG-ACCU -GAA-G-ACG 3121 G-U------- -GU------- ---------- ---------- -----(---- -UUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --AC------ A-UC-GU-UU A-GGGU-UAA ACC-AG-CG- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.flexil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter flexilis str. CR-63 ATCC 23079 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter flexilis str. CR-63 ATCC 23079 (T). ORGANISM Flexibacter flexilis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D., Mandelco,L. and Stetter,K.O. TITLE The flexibacter-flavobacter connection JOURNAL Syst. Appl. Microbiol. 13, 161-165 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23079 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62794 ATCC 23079 (T) = IFO 15060 isolate_name= CR-63 isolate_name= Lewin CR-63 BASE COUNT 398 a 299 c 432 g 312 t 2935 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGA-A -GGC-AU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUC---A -UCAG-G-GG 421 -GAU-AA-CU A--------- ------CC-- C(-GAAA-)G -GGUG-G--C UAACACC-GC 481 AU-AAU---- ---------- -------A-C UA-C--U-GA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UG-GU----A UU--UAAA-- ---UC----- ---------- 601 --(------- ---UGNG--- ---)------ ---------| -----G--A- G--GAU---- 661 ----GAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-G-GG| -A-ACU--(G -AGA)-GGUU ----GG-U-- CCC-C|N-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-UG-(GGA A)-CAC-UGA ACCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G GU(C-UC-U- -G)AC-UUGU AAA--CUGC| UUUA-GC-AA 1021 --GG-GAA-- GA-AAAA-GC --UCA----( -----UGCG- ---------) ---U-GA-GA 1081 ---------- -------AAU U-GA-CGGU- A-CCU-U-GA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 A-CU-AAG|U CAG---UGUU A-AAA-UU-U UG-CGG-C(- UC-A)A-CCG -NA-A-GUC- 1321 -UGGN-AUUG A-UAC-UGGU A-AGCUU-GA GUA-----UA U-GU-GAGGU AGG-C|GGAA 1381 UU-GAUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-AUCAAG- AACU-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------A 1501 UGU--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGA A--GA-CU-- -------C|G -AU-GU-UGG -AC-A----- ---------- 1681 -(-GA-UA)- ---------- ---------- ---------- --------UG -UUCAG-CGU 1741 CU--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUCUU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -AUC-A--(- GAAA-)-UGG -U-GCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CN-N |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- UA-CAC-U(G 2881 -CAA)AGUG- ---------- AU-GCGAA-U CUCGG-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAU)-G GCG-CGGUG- AAUAC-GUU- CCC-NGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GU-CUG- GG-AG-ACCU -GAA-G-GCG 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GU-UC A-GGGU-AAA ACA-GG-UA- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.ruber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter ruber str. Lewin GEY ATCC 23103 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter ruber str. Lewin GEY ATCC 23103 (T). ORGANISM Flexibacter ruber. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23103 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58788 isolate_name= Lewin GEY BASE COUNT 400 a 298 c 434 g 318 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UAUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--UCU-A C-CUUU---C -ACAG-G-GG 421 -GAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUNA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--G-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- AC-UU----A AU--UAAAA- ---UC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--A- G--GUG---- 661 ----AGAG-- AUG---A-|G CAUGC----- -GA|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-G-GG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-AA-(GGA A)-UUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CG(C-UA-A- -G)CG-UUGU AAA--CUGC| NUUU-GU-CA 1021 --GG-GGA-- GA-AAAG-AG --GGA----( -----UGCG- ---------) ---U-CC-CU 1081 ---------- -------AAU U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GGAG |-GAUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---UGGU U-AAA-UU-U UG-CAG-C(- UU-A)A-CUG -UG-A-GUA- 1321 -UGCC-AUUG A-UAC-UGUU A-GACUU-GA GAC-----UU G-AN-GGGGU AAG-U|GGAA 1381 CU-GGUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CU-ACCAAG- AAUA-UCGA- 1441 -U-A-GU(-G AA-G)ACAA- -CUUACUA-- ---------- ---------- ---------C 1501 GGA--AG-UU CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------C|G -UU-GU-UAG -CC-U----- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------GG -GUUAG-UGA 1741 CU--AA---- --GG-(GAA- ---A)C-CG- AUAA-GUUAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GU|--- ---------G ---ACCG--- -AC----UGU 1981 -UUC-A--(- GAGA-)-UGA -G-ACAU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CGG-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGU-U-G-C- UA-CUU-G(G 2881 -UAA)CAAG- ---------- GU-GCCAA-U CUCAA-AAAG -CC-U-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UNG- GA-GG-ACCU -AAA-G-ACU 3121 G-U------- -GA-CCG--- ---------- ---------- -----(---- -UAAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CA-GU-UU A-GGGU-AAA ACG-AG-NG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flc.major 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flectobacillus major. ACCESSION No information KEYWORDS No information. SOURCE Flectobacillus major. ORGANISM Flectobacillus major. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62787 ATCC 29496 = DSM 103 (T) BASE COUNT 389 a 298 c 436 g 332 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--CCU-A C-CUAU---U -AUUG-G-GG 421 -GAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-C GA-U--U-GA ---CUG-(-- --------GC 541 AU-------- -)-CAG---U UG-AU----U GU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--AUA---- 661 ----AUAG-- AUG---G-|G CAUGC----- -GU|----CC A--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAY-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UU-GG 781 U-AG-G-GG| -A-UCU--(G -AGA)-GGAU ----AA-U-- CCC-N|N-NC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CG(U-UA-U- -G)CG-UUGU AAA--CUGC| UUUU-UU-AU 1021 --AG-GAA-- GA-AGGA-GG --CCU----( -----UGCG- ---------) ---A-GG-CU 1081 ---------- -------UGG U-GA-CGGU- A-CUA-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -N|-GU-UU- 1261 A-UU-AAG|U CAG---UGGU G-AAA-GA-C GG-UCG-C(- UC-A)A-CGA -UU-G-CAG- 1321 -UGCC-AUUG A-UAC-UGGU A-GACUU-GA GUU-----CG A-AU-GAGGU AGC-U|GGAA 1381 UG-GAUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-AUCCAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUUACUN-- ---------- ---------- ---------A 1501 UUC--GA-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|A -CU-GU-UUG -CC-U----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -GUGAG-UGG 1741 UA--CA---- --GA-(GAA- ---A)U-CG- UUAA-GUCAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -GA----UGU 1981 -AGU-A--(- GAGA-)-UAU -U-ACAG--- U--------- ---CU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AG-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CN-N |-UU--GUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AU-GGG-A CG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGCG GGU-A-G-C- UA-CCA-G(G 2881 -YAA)CUGG- ---------- AU-GCCAA-U CUCG--AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-GUA-(UC -AGCUAU)-G ACC-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GU-CUG- GU-AG-ACCU -AAA-G-CUC 3121 C-G------- ---------- ---------- ---------- -----(--CC UUAAAGC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- C-GG-AG-UU A-GGGU-AGA ACA-GG-UA- AUU-GGGG-C 3301 U---AAGUC- GNNA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE35 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-35. str. E-35. ACCESSION No information KEYWORDS No information. SOURCE str. E-35. str. E-35. ORGANISM str. E-35. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58341|g1718217 biol_source= lignin enrichment culture isolate_name= E-35 BASE COUNT 73 a 67 c 97 g 58 t 4081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 ........AN CGGUGG-AGC A-U-GN-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GU|--- ---------G ---AGGG--- -AA----UGG 1981 -UCU-G--(- GAGA-)-CAG -A-UCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCC-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGA-CA-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-GGUC-AU CAU-G-GN-C CUUAC-G-NC -CA--GGGN- 2821 G-ACA-CA-C GUG--CUACA .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spc.myxoco 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporocytophaga myxococcoides. ACCESSION No information KEYWORDS No information. SOURCE Sporocytophaga myxococcoides. ORGANISM Sporocytophaga myxococcoides. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS ATCC 10010 = NCIMB 9920 (T) BASE COUNT 390 a 309 c 440 g 308 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NN UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUC-CA (--GC----- ---------- ---------- 241 --------AA -)UG-GAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--UCU-A C-CUGU---A -ACUU-A-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -UCGG-A--U UAAUACC-UA 481 AU-GAU---- ---------- -------A-A CC-G--A-GA ---CUG-(-- --------GC 541 AU-------- -)-CAG---N UU-UU----G UU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----ACAG-- AUG---A-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UC-AG 781 U-AG-G-GG| -A-CCU--(G -AGA)-GGGC ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-UC-(GAG A)-GAC-UGA CCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAA--G-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| NUUU-GA-UC 1021 --GG-GAA-- CA-AAG--AG --GCC-A--( -----UGCG- ---------) --UG-GC-AA 1081 ---------- -------G-A U-GA-GUGU- A-CCG-A-UA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CAG---UGGU G-AAA-GG-C AG-CAG-C(- UU-A)A-CUG -UU-A-GCAC 1321 -GGCC-AUUG A-UAC-UGGU U-AGCUU-GA GUA-----CA G-UC-GAGGU AGG-C|GGAA 1381 UU-GAAGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-UUCAAG- AACA-CCUA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AU-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-UAG -CG------- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- ---------U -GUUAG-CGG 1741 CU--AA---- --GC-(GAA- ---A)G-CA- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAN UG-ACGGG-N -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-AC-UAG AAU-GU|--- ---------U ---AGGG--- -AA----UGA 1981 -UGC-A--(- GAGA-)-UGU -G-UCAG--- C--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----G---| CCC-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-A |-UC--UUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCU --GC(-G--U AA)-GCA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAN-N-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGU-U-G-C- GA-GCU-G(G 2881 -UAA)CAGU- ---------- AA-GCCAA-U CACAA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGNCC- GNC-AAG--- --CCA-UGGG A--GU-UGG- GG-AG-ACCU -GAA-G-ACG 3121 G-U------- -AA-CCG--- ---------- ---------- -----(---- -UUG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CC-GN-UU A-GGGU-NAA ACC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Run.slithy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Runella slithyformis. ACCESSION No information KEYWORDS No information. SOURCE Runella slithyformis. ORGANISM Runella slithyformis. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62786 BASE COUNT 375 a 303 c 451 g 315 t 2932 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GGC-GAAG 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- ACUG-UCGU- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUAU---C -ACAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -AGGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-C AG-G--G-GC ---UCC-(-- --------GC 541 AU-------- -)-GGA---G AU-AU----U GC--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AUAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UC-AG 781 U-AG-G-GG| -G-CGU--(C -AGA)-GCGU ----GG-U-- CCC-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-AU-(GCA A)-GUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G UC(C-UC-U- -G)GA-UUGU AAA--CUGC| NUUU-AU-CG 1021 --GG-GAA-- GA-AUAG-GU --CUC-U--( -----UGCG- ---------) --AG-GG-AU 1081 ---------- -------U-G U-GA-CGGU- A-CCC-G-AU G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 U-AU-AAG|U CAG---UGGU G-AAA-GC-U GG-UUG-C(- UC-A)A-CAA -UC-A-AGU- 1321 -UGCC-AUUG A-UAC-UGUU A-GACUU-GA GAG-----AA G-UG-GAGGU NCA-U|GGAA 1381 UG-GAUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-AUCCAG- AACG-UCGA- 1441 -U-U-GC(-G AA-G)GCAG- -UGGGCUG-- ---------- ---------- ---------U 1501 ACU--UU-UU CUGACA-CUG AG-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGC G--AA-CU-- -------A|G -CU-UU-CGG -GU-U----- ---------- 1681 -(-UN-A-)- ---------- ---------- ---------- --------GA -UUCGG-GGG 1741 CU--AA---- --GG-(GAA- ---A)C-CG- AUAA-GUUCG C|N|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAA AUC-AU|--- ---------A ---CACG--- -AG----UCA 1981 -UUC-A--(- GAGA-)-UGA -G-UGAG--- C--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----G---| CGG-GU-AUG |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-GG--AAU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AUU-UC-A A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-GG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UG -UA--CAGAG UGU-U-G-C- GA-GGC-A(G 2881 -CGA)UGCC- ---------- AA-GCCAA-U CACUA-AAAG -CA-C-GUC- ACAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGA A--GU-CGG- GG-AG-ACCU -AAA-G-CGG 3121 AAG------- ---------- ---------- ---------- -----(---G UUAAAGA--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- C-UU-CG-UU A-GGGU-AAA UCU-GG-UA- ACU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.hutchin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga hutchinsonii str. D465 (P.H.A. Sneath) ATCC 33406. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga hutchinsonii str. D465 (P.H.A. Sneath) ATCC 33406. ORGANISM Cytophaga hutchinsonii. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33406 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58768 ATCC 33406 = DSM 1761 = NCIMB 9469 (T) isolate_name= D465 (P.H.A. Sneath) BASE COUNT 403 a 311 c 429 g 316 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--CCU-A C-CUUA---A -ACUG-G-GA 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-CC 481 AU-AAC---- ---------- -------A-C AU-U--U-GU ---GUC-(-- --------UC 541 AU-------- -)-GAC---A UG-AU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- AUG---G-|G CAUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-GA 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUAC| UUUU-GA-UU 1021 --GG-GAA-- CA-AAUG-AC --UCU----( -----UGCG- ---------) ---A-GA-GU 1081 ---------- -------AGC U-GA-GUGU- A-CCA-A-UA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C GA-UCG-C(- UU-A)A-CGA -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGCU A-GGCUU-GA GUA-----UA G-AU-GAGGU AGG-C|GGAA 1381 UU-GACAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-GUCAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GU- GC-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-GUG -C-------- -G-------- 1681 -(AUA-AA)C A--------- ---------- ---------- ---------- -GUACG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -AUC-A--(- GAAA-)-UGG -U-GCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCU --GU(-G--U AA)-ACA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGU-U-G-C- AA-GCU-A(G 2881 -UGA)UAGC- ---------- AA-GCCAA-U CACAA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-NGA-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGAA A--GU-CUG- GU-GG-ACCU -GAA-G-GCC 3121 G-U------- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-UC A-GGGU-AAA ACA-GG-UA- AUU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.hutchi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga hutchinsonii str. D465 (P.H.A. Sneath) DSM 1761. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga hutchinsonii str. D465 (P.H.A. Sneath) DSM 1761. ORGANISM Cytophaga hutchinsonii. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 1761 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12663|g425722 DSM 1761 = NCIMB 9469 (T) = ATCC 33406 isolate_name= D465 (P.H.A. Sneath) BASE COUNT 333 a 254 c 358 g 286 t 3145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -NC-GUAUG- CAA--CCU-A C-CUUA---A -ACUG-G-GN 421 -GAU-AG-CC N--------- ------GG-- G(-GAAU-)C -UCGG-A--U UAAUUCC-CC 481 AU-AAC---- ---------- -------A-C AU-U--U-GU ---GUC-(-- --------UC 541 AU-------- -)-GAC---A UN-AU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- AUG---G-|G CAUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UN- CGA------- -----UC-GA 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUNC| UUUU-GA-UU 1021 --GG-GAA-- CA-AAUG-AC ---CU----( -----UGCG- ---------) ---A-GA-GU 1081 ---------- -------AGC U-GA-GUGU- A-CCA-A-UA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUNC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UU- 1261 A-AU-AAG|U CAG---UGGU G-AAA-GC-C NA-UCG-C(- UU-A)A-CGA -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGCU A-GGCUU-GA GUA-----UA G-AU-GAGGU AGG-C|GGAA 1381 UU-GACAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-GUCAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 GUU--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GU- UC-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-GUG -C-------- -G-------- 1681 -(AUN-NN)C A--------- ---------- ---------- ---------- -GUACG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -AUC-A--(- GAAA-)-UGG -U-GCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NNCCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-NA-CU-C- U-AGA-GA-G A-CU-G-CCU --GU(-G--U UA)-ACA-GA -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGU-U-G-C- AA-GCU-A(G 2881 -UGA)UAGC- ---------- AA-GCCAA-U CACAA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCNNC-U- U)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.aurant2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga aurantiaca. ORGANISM Cytophaga aurantiaca. REFERENCE 1 AUTHORS Nakagawa,Y. and Yamasato,K. TITLE Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis JOURNAL J. Gen. Microbiol. 139, 1155-1161 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12658|g425717 NCIMB 8628 = ATCC 12208 BASE COUNT 339 a 256 c 360 g 283 t 3138 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GCGU---AAC -AC-GUAUG- CAA--CCU-A C-CUUA---A -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAU-)C -UCGG-A--U UAAUACC-CC 481 AU-AAC---- ---------- -------A-C GU-G--G-AU ---GUC-(-- --------UC 541 AU-------- -)-GAC---A AU-UA----C GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- CUG---G-|G CAUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-GA 781 U-NG-G-GN| -G-UCU--(G -AGA)-GGAU ----GA-U-- NCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AN- C-N---NU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUAC| UUUU-GA-UU 1021 --GG-GAA-- CA-AAU--GA --C-C-U--( -----UGCG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-GUGU- A-CCA-A-UA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C NA-UCG-C(- UU-A)A-CGA -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUC G-GGCUU-GA GUA-----UA G-UU-GAGGU AGG-C|GGAA 1381 UU-GACAGU- GUN-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-GUCAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 AGU--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GU- UC-GGG-GN- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-GUG -CG------- ---------- 1681 -(AUA-AA)C ---------- ---------- ---------- ---------A -GUACG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(U CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-U-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -AUC-A--(- GAAA-)-UGG -U-GCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- -----A---| CCU-G--AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGN---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCU --GU(-G--U UA)-ACA-GA -GAGG-A-AG 2761 G-NG-GGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGU-U-G-C- AA-GCU-A(G 2881 -UGA)UAGC- ---------- AA-GCCAA-U CACAA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCANC-U- U)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cy.auranti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cytophaga aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Cytophaga aurantiaca. ORGANISM Cytophaga aurantiaca. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS ATCC 12208 = NCIMB 8628 BASE COUNT 389 a 306 c 419 g 307 t 2955 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N UUUACAAUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GANG 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- NNN|-NC--G ACCG-GCNC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- CAA--CCU-A C-CUUA---A -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-CN 481 AU-AAC---- ---------- -------A-C GU-G--G-AU ---GUC-(-- --------UC 541 AU-------- -)-GAC---A AU-UA----C GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- CUG---G-|G CAUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-GA 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-U ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-G CG(U-UC-U- -G)CG-UUGU AAA--CUAC| UUUU-GA-UU 1021 --GG-GAA-- CA-AAU--GA --CUC-U--( -----UGCG- ---------) --AG-AG-UA 1081 ---------- -------G-C U-GA-GUGU- A-CCA-A-UA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAG---UGGU G-AAA-GC-C GA-UCG-C(- UU-A)A-CGA -UC-G-AAC- 1321 -UGCC-AUUG A-UAC-UGUC G-GGCUU-GA GUA-----UA G-UU-GAGGU AGG-C|GGAA 1381 UU-GACAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-GUCAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUACUA-- ---------- ---------- ---------A 1501 AGU--AU-AA CUGACG-CUG AG-G------ -------CN- C-NNAA-GU- GC-GGN-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-N UC----CGC- A-CA-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------C|G -CU-GU-GUG -CG------- ---------- 1681 -(AUA-AN)C ---------- ---------- ---------- ---------N -NUNCG-CGG 1741 CC--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUGAU C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGNA 1921 A-CCUUA-CC UAG-GC-UAG AAU-GU|--- ---------G ---AAGG--- -AA----UGU 1981 -AUC-A--(- GAAA-)-UGG -U-GCAG--- U--------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N N-)------- NN-------- -----A---| CCU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AG-NGG---- ---------- ---------- ---G(---NU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NA-CU-C- U-AGA-GA-G A-CU-G-CCU --GU(-G--U AA)-ACA-GA -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUNC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGU-U-G-C- AA-GCU-A(G 2881 -UGA)UAGC- ---------- AA-GCCAA-U CACAA-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCAAU)-G ACG-CGGUG- AAUAC-GUU- CCC-NGA-CC UUGUA----C 3061 ACACCGNNC- NUC-AAG--- --NCA-UGAA A--GU-CUG- GU-GG-ACCU -GAA-G-GCC 3121 G-N------- -AN-NC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CG-GC-UC A-GGGU-NAN NCA-GG-UA- AUU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.7-FL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.7 FLX.LITORALIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.7 FLX.LITORALIS_GROUP. ORGANISM 2.7.2.7 FLX.LITORALIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.polymo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter polymorphus. ACCESSION No information KEYWORDS No information. SOURCE Flexibacter polymorphus. ORGANISM Flexibacter polymorphus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58786 BASE COUNT 394 a 296 c 422 g 337 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAN -NAAC-GC-- UAGC-GGC-G -GGC-UU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G ACCG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CUU-G C-CUAU---A -ACAG-A-GG 421 -GAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUAUC-UC 481 AU-AAU---- ---------- -------A-U UA-U--U-GA ---NAG-(-- --------GC 541 AU-------- -)-CUU---U UA-AU----A AU--UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--U- G--GUU---- 661 ----AUAG-- AUG---G-|G CAUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UR-AG-( GU-AAY-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|N-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA CGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G UC(C-UC-A- -G)GA-UUGU AAA--CUNC| UUUU-AU-AU 1021 --AG-GAA-- GA-AAUG-CC --CUN-A--( -----UGCG- ---------) --UU-AG-GG 1081 ---------- -------AGU U-GA-CGGU- A-CUA-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -CU-GGGU|U UAAA-GGGU- GUG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CUG---UGGU G-AAA-UG-C UG-UUG-C(- CU-A)A-CAA -UA-G-CAC- 1321 -UGCC-AUGG A-UAC-UGUA G-AACUU-GA AUA-----CU G-UA-GAGGA AUG-U|GGAA 1381 UU-CGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-ACGAGG- AAUA-UCGA- 1441 -U-U-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA UUGACG-CUG AU-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--UA-CU-- -------C|G -GU-GC-AUG -CC-U----- -A-------- 1681 -(UUA-UA)G ---------- ---------- ---------- --------GG -GUGUG-UGC 1741 CU--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)---C-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-U-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UAG-AC-UA- AAU-GU|--- ---------G ---AACG--- -AC----GGA 1981 -UAC-A--(- GAGA-)-UGU -A-UCUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CGU-GA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AU-CAN---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GN-CU-C- U-AGG-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-NG-GGG-A CG-ACG--UN -N-AAUC-AU CAU-G-GC-C CUUAC-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAAUG AGC-A-G-C- GA-GCU-A(G 2881 -UAA)UAGU- ---------- CA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGUGGUC- (UGCAAC-U- C)-GACCACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGCNAU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-UGG- GG-GU-GCCU -GAA-G-AUG 3121 G-U------- -GA-CCA--- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CU-GU-UA A-AGGC-AAA ACC-GA-UA- ACU-AGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.litora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter litoralis str. Lewin SIO-4 ATCC 23117 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter litoralis str. Lewin SIO-4 ATCC 23117 (T). ORGANISM Flexibacter litoralis. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23117 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58784 isolate_name= Lewin SIO-4 BASE COUNT 396 a 297 c 425 g 352 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N AUUUACACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGU-A -GGC-UU--A AUAC-AUGCA A-GUC-GUAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UUUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNNG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAUG- UAA--CCU-A C-CUUG---U -AGAG-A-GG 421 -NAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UUGG-A--U UAAUACC-UC 481 GU-AGU---- ---------- -------C-U UA-U--A-GA ---AAG-(-- --------GC 541 AU-------- -)-CUU---U UU-AU----A AG--UAAAU- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--U- G--CUA---- 661 ----CAAG-- AUG---G-|A CAUGC----- -GC|----AU G--AUUA-G- AUU-G---UU 721 GG-UG-AG-( GU-AAY-GG) -C-UCACN-A A|-GUC-CU- UGA------- -----UC-AU 781 U-AG-G-GG| -U-UCU--(G -AGA)-GGAA ----GG-U-- CCC-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCCA UACC-GC-GU 961 G-A-AG-G-A A-GAC--G-G UC(C-UC-U- -G)GA-UUGU AAA--CUUC| UUUU-AU-AC 1021 --AG-GAA-- GA-AAUG-CA --GAC-U--( -----UGCG- ---------) --AG-UU-UG 1081 U--------- -------U-U U-GA-CGGU- A-CUG-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGU|U UAAA-GGGU- ACG-UAG-GU -G|-GG-CG- 1261 U-CU-AAG|U CUG---GAGU G-AAA-GU-U UG-AGG-C(- UC-A)A-CCU -CG-A-AAG- 1321 -UGCU-UUGG A-UAC-UGGG C-GUCUA-GA AUU-----AG A-UA-UAGGU AGC-U|GGAA 1381 UU-UGUGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-ACGANN- NACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GCUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA UUGACA-CUG AU-G------ -------UA- C-GAAA-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------C|G -GU-GC-UUG -UA-C----- ---------- 1681 -(-UU-AC)- ---------- ---------- ---------- --------GU -AUGAG-UGC 1741 CU--UA---- --GG-(GAA- ---A)C-CG- UUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GUU-G---(G CAA)---C-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- ---------G ---CGUG--- -AC----GAU 1981 -UUC-A--(- GAGA-)-UGA -U-UUUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CAC-AA-AGN |---N|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CN-A |-UU--UGU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-NA-CU-C- U-ACA-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--NN -N-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGCG UGC-A-G-U- AA-GCU-A(G 2881 -CGA)UAGU- ---------- UA-ACGAA-U CACGA-AAAG -CC-G-GUC- ACAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCAAC)-G AUG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --CCA-UGGG A--GU-UGG- GU-GU-GCCU -GAA-G-GCA 3121 G-U------- -GC-UC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAA------ G-CU-GC-UU A-GGGC-AAA ACU-AG-CG- ACU-GGGG-C 3301 U---NAGUN- NNNN-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flx.roseol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexibacter roseolus str. Lewin CR-155 ATCC 23088 (T). ACCESSION No information KEYWORDS No information. SOURCE Flexibacter roseolus str. Lewin CR-155 ATCC 23088 (T). ORGANISM Flexibacter roseolus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23088 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58787 isolate_name= Lewin CR-155 BASE COUNT 374 a 312 c 434 g 319 t 2937 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUACAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AN -)NN-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CUUA---U -AUUG-G-GA 421 -AAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUGUC-CC 481 AU-AGC---- ---------- -------A-C UG-C--G-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UU-GC----A GU--UAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--AUA---- 661 ----UAAG-- AUG---G-|G CAUGC----- -GU|----CU G--AUUA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GAC-UA- CGA------- -----UC-AG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-C-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UNA ACCA|-GCCA UGCC-GC-GU 961 G-U-CA-G-A U-GAA--G-G UC(C-UC-U- -G)GA-UUGU AAA--UGAC| UUUU-CU-AC 1021 --GG-GAA-- GA-AUGA-GC --GUC----( -----UGCG- ---------) ---G-AC-GG 1081 ---------- -------AAG UUGA-CGGU- A-CCG-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGU|U UAAA-GGGU- ACG-UAG-GC -G|-GU-UGU 1261 G-CC-AAG|U CUG---GGGU G-AAA-GU-U UG-CAG-C(- UC-A)A-CUG -UA-A-AAU- 1321 -UGCC-UUGG A-UAC-UGGU C-GGCUA-GA GUA-----GU G-GA-GCGGU NNC-U|...A 1381 UU-UAUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A CU-AUGAGG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 UCA--CU-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG U--UA-CU-- -------C|G -GU-NC-GUG -CC-GC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GUG -GUGCG-UGC 1741 CU--GA---- --GC-(GAA- ---A)G-CG- UUAA-GUAAC C|C|A-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GA-UAG AAU-GU|--- ---------G ---AGAG--- -AC----CGC 1981 -UGC-C--(- GAAA-)-GGU -G-GCUU--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| CUC-AA-AAC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAC-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAAAG GGU-U-G-C- UA-GAC-A(G 2881 -CGA)UGUU- ---------- CG-GCUAA-U CCCAA-AAAG -UC-A-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCAAC)-G GCG-CGGUN- AAUAC-GUU- CCC-NGA-CN UUGUA----C 3061 ACACCGCNC- NUC-AAG--- --NCA-UGGA A--GU-UGG- GU-GC-GCCU -GAA-G-ACA 3121 G-U------- -GG-CCG--- ---------- ---------- -----(---- -UCAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGA------ G-CU-GU-UU A-GGGC-NAA ACC-AG-UA- ANU-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.8-TH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.8 THERMONEMA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.8 THERMONEMA_ASSEMBLAGE. ORGANISM 2.7.2.8 THERMONEMA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tnm.lapsum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermonema lapsum. ACCESSION No information KEYWORDS No information. SOURCE Thermonema lapsum. ORGANISM Thermonema lapsum. REFERENCE 1 AUTHORS Patel,B.K.C., Saul,D.S., Reeves,R.A., Williams,L.C., Cavanagh,J.-E., Nichols,P.D. and Bergquist,P.L. TITLE Phylogeny and lipid composition of Thermonema lapsum, a thermophilic gliding bacterium JOURNAL FEMS Microbiol. Lett. 115, 313-318 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11703 BASE COUNT 366 a 351 c 494 g 279 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGG 121 G--GC-AU-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUCUC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GAGAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G ACCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUAUG- CAA--CCU-A C-CCUG---C -ACUG-G-GG 421 -GAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--G UAAUACC-CC 481 AU-AUA---- ---------- -------C-U CA-U--A-UG ---AGG-(-- --------GC 541 AU-------- -)-CCA---C GU-AU----G AG--GAAA-- ---GC----- ---------- 601 --(------- ---UUAG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AAG---G-|G CAUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACGGA-C-A 841 (CUGA-GA-C ACG)--GGUC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(C-AC-U- -G)GG-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GG-GAC-- GA-AAGA-GC --GCC----( -----UGCG- ---------) -GGC-GU-GU 1081 ---------- -------GUU U-GA-CGGU- A-CCU-G-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CUG---UGUU G-AAA-GG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UAA- 1321 --GGC-AUGG A-UAC-UGCG A-GGCUU-GA GUA-----CA G-UG-GAGGC AGA-U|GGAA 1381 UU-GGUGGA- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A CC-ACCAGG- AACA-CCGA- 1441 -U-A-GC(-G AA-G)GCAG- -UCUGCUA-- ---------- ---------- ---------C 1501 GCU--GC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------C|G -GU-GU-CAG -CC-U----- ---------- 1681 -(GUU-AU)- ---------- ---------- ---------- --------AG -GUUGG-UGC 1741 CU--AA---- --GC-(GAA- ---A)G-CG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUAAUA-C G)--CGAGGG 1921 A-CCUUA-CC UGG-GC-UAG AAU-GC|--- ---------C ---UCUG--- -AC----AGC 1981 -UAC-C--(- GAAA-)-GGU -A-GUAU--- C--------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-AG-AGC |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--CUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-AAG-GG-G A-CU-G-CCU --GC(-G--C AA)-GCA-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-G-CG -UA--CAGAG GGU-A-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCCAA-U CCCGG-AAAG -CG-C-GCC- ACAGUACGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GC-CGG- GU-GC-GCCU -GAA-G-ACG 3121 G-U------- -GG-CC---- ---------- ---------- -----(---- GAUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA------ G-CC-GU-UU A-GGGC-GAA ACC-GG-UG- ACU-GGGG-C 3301 U---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2085 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2085. str. SBR2085. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2085. str. SBR2085. ORGANISM str. SBR2085. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84615|g871736 isolate_name= SBR2085 BASE COUNT 92 a 87 c 126 g 73 t 3998 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGNN-GGN-G -UGA-CU--A AAAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCAC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGG- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CUUC---G -AGCG-G-GG 421 -GAU-AA-CU G--------- ------CC-- C(-GAAA-)G -GGUG-G--C UAAUACC-GC 481 AN-AU----- ---------- ---------- -G-U--C-UG ---CUC-(-- -------UUC 541 GG-U------ -)-GAG---C AG-AC----- ----UGAA-- ---CU----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--G- G--UUC---- 661 ----GAAG-- AUG---G-|G CAUGC----- -GU|----CC N--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-GACAAU-- GG-UC-(GCA A)-GAC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--C-G AU(C-UA-U- -G)AU-CUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.9-RH 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.9 RHODOTHERMUS. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.9 RHODOTHERMUS. ORGANISM 2.7.2.9 RHODOTHERMUS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rht.obamae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodothermus obamae.. ACCESSION No information KEYWORDS No information. SOURCE Rhodothermus obamae. ORGANISM Rhodothermus obamae. REFERENCE 1 AUTHORS Sako,Y., Takai,K., Ishida,Y., Uchida,A. and Katayama,Y. TITLE Rhodothermus obamae sp. nov., a modern lineage of extremely thermophilic marine bacteria JOURNAL Int. J. Syst. Bacteriol. 46, 1099-1104 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95071|g1160274 BASE COUNT 334 a 413 c 506 g 267 t 2856 others ORIGIN 1 .......... .......... .......... .......... AGAGUA(U-G A)U-CCU|-G 61 UCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -GGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGUUC-UC (--CUU---- ---------- ---------- 241 --------CG -)GG-AGGAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -C-|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- UAA--CCU-G C-CCUC---G -AGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------G-U CC-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---U CC-GG----G AU--GAAA-- ---GCCC--- ---------- 601 --(------- ----UCU--- ---)------ ---------| ---GGG--CC G--CUC---- 661 ----GAGG-- AUG---G-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGCCGA- CGA------- -----UC-CG 781 U-AG-CAUG| -G-UCUU-(G -AGA)-GGAC ----GACC-- CAG-C|C-AC -ACUUCCU-A 841 (CAGA-GA-C ACG)--GUCC -AGA-A-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCCA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-C CC(U-UC-G- -G)GG--UGU AAA--CUCC| UUAU-CU-GG 1021 --GG-GAA-- GA-AAUC-CC --GG-----( -----GUAUG G--------) -----UC-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCC-C-AG G-AA--UAAU ---------C 1141 -GCCGGCU-A ACUUCCGUG( CCA--UCAGU CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 AAG-CGUUGC CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GG-GC- 1261 U-GU-AAG|U CAG---AGGU G-GAA-GC-C UC-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCA G-CUCUU-GA GUC--CCCUC G-GA-GAGGC CGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)ACGG- -GCGGCUG-- ---------- ---------- ---------G 1501 ACG--GG-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------C|G -GC-GU-UGC -CG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GUC -GGCAG-UGC 1741 CU--AA---- --GCU(UAA- ---G)G-CG- GUAA-GCAUC C|C|A-CCU- G-GUGAGUAC 1801 GGC-C---(G CAA)---G-C UU-GAAACUC -AAA-GGAAU UG-UCGGG-G -U-C-CC--G 1861 C-A--CA-AG CGCUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAC-AC|--- -------C-A ---CCGG--- -AC----ACC 1981 -CUC-C--(- GAAA-)-GGG -G-GUCU--- C--------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| CUG-GU-GGU |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)CCCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UCC-GCC- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGC-GA-G A-CU-C-CUU AACG(-G--C AA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACU--UC -A-AGUC-AU CAU-G-UC-C CUUAC-G-CC -CA--GGGC- 2821 U-GAAACA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-A-G-C- CA-CCCCC(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCCU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCUAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUCAUAC--- --CCA-UGGG A--GC-CGG- GG-GC-GCCC -GAA-G-UCC 3121 G-UGA-C-CC -AA-CCCGC- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC GGGAGG-G-A G-CG-GA-CU A-AGGC-GAA CCC-GG-CG- AUU-GAGG-G 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rht.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodothermus marinus.. ACCESSION No information KEYWORDS No information. SOURCE Rhodothermus marinus. ORGANISM Rhodothermus marinus. REFERENCE 1 AUTHORS Andresson,O.S. and Fridjonsson,O.H. TITLE The sequence of the single 16S rRNA gene of the thermophilic eubacterium Rhodothermus marinus reveals a distant relationship to the group containing Flexibacter, Bacteroides, and Cytophaga species JOURNAL J. Bacteriol. 176, 6165-6169 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80994|g530044 (bases 2 to 1544) NB: same seq as X77140 (Rht.marinu) BASE COUNT 330 a 419 c 534 g 260 t 2833 others ORIGIN 1 .......... .......... .......... .UUACUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGC -GAAC-GC-- UGGC-GGC-G -GGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUUCU-CC (--UUU---- ---------- ---------- 241 --------CG -)GG-AGAAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -C-|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- UAA--CCU-G C-CCUC---G -AGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------G-U CC-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGC---U CC-GG----G AU--GAAA-- ---GCCC--- ---------- 601 --(------- ----UCU--- ---)------ ---------| ---GGG--C- G--CUC---- 661 ----GAGG-- AUG---G-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCCA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-C UC(U-UC-G- -G)GG--UGU AAA--CUCC| UUUU-CU-GG 1021 --GG-GAA-- GA-AAUC-CC --GGC----( -----UCUG- ---------) ---G-UC-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCC-C-AG G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 AAG-CGUUGC CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GG-GC- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UC-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCA G-CUCUU-GA GUC-----CC G-GA-GAGGC CGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -GCGGCUG-- ---------- ---------- ---------G 1501 ACG--GG-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------C|G -GC-GU-UGC -CG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -GGCAG-UGC 1741 CU--AA---- --GC-(UAA- ---C)G-CG- GUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAC-AC|--- -------C-A ---CCGG--- -AC----AGC 1981 -CCC-C--(- GAAA-)-GGG -G-GUCU--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| CUG-GU-GGU |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGC-GG-G A-CU-G-CCU --GC(-G--C AA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-A-G-C- CA-CCC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCU--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCUAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAC--- --CCA-UGGG A--GC-CGG- GG-GC-GCCC -GAA-G-UCC 3121 G-UGA-C-CC -AA-CCUGC- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC GGGAGG-G-A G-CG-GC-CU A-AGGC-GAA CCC-GG-UG- ACU-GGGG-G 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UAAA|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rht.marinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodothermus marinus.. ACCESSION No information KEYWORDS No information. SOURCE Rhodothermus marinus. ORGANISM Rhodothermus marinus. REFERENCE 1 AUTHORS Andersson,O.S. and Fridjonssen,O.H. TITLE The sequence of the single 16S rRNA gene of the thermophilic eubacterium Rhodothermus marinus reveals a distant relationship to the group containing Flexibacter, Bacteroides, and Cytophaga species JOURNAL J. Bacteriol. 176, 6165-6169 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77140|g450362 (bases 2 to 1544) BASE COUNT 330 a 419 c 534 g 260 t 2833 others ORIGIN 1 .......... .......... .......... .UUACUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GGC -GAAC-GC-- UGGC-GGC-G -GGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUUCU-CC (--UUU---- ---------- ---------- 241 --------CG -)GG-AGAAC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -C-|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- UAA--CCU-G C-CCUC---G -AGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------G-U CC-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGC---U CC-GG----G AU--GAAA-- ---GCCC--- ---------- 601 --(------- ----UCU--- ---)------ ---------| ---GGG--C- G--CUC---- 661 ----GAGG-- AUG---G-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCCA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-C UC(U-UC-G- -G)GG--UGU AAA--CUCC| UUUU-CU-GG 1021 --GG-GAA-- GA-AAUC-CC --GGC----( -----UCUG- ---------) ---G-UC-GG 1081 ---------- -------GAC U-GA-CGGU- A-CCC-C-AG G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 AAG-CGUUGC CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GG-GC- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UC-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCA G-CUCUU-GA GUC-----CC G-GA-GAGGC CGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -GCGGCUG-- ---------- ---------- ---------G 1501 ACG--GG-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------C|G -GC-GU-UGC -CG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -GGCAG-UGC 1741 CU--AA---- --GC-(UAA- ---C)G-CG- GUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UCG AAC-AC|--- -------C-A ---CCGG--- -AC----AGC 1981 -CCC-C--(- GAAA-)-GGG -G-GUCU--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| CUG-GU-GGU |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGC-GG-G A-CU-G-CCU --GC(-G--C AA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-A-G-C- CA-CCC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCU--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCUAC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAC--- --CCA-UGGG A--GC-CGG- GG-GC-GCCC -GAA-G-UCC 3121 G-UGA-C-CC -AA-CCUGC- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC GGGAGG-G-A G-CG-GC-CU A-AGGC-GAA CCC-GG-UG- ACU-GGGG-G 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UAAA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.7.2.10 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.7.2.10 SBR_ISOLATES. ACCESSION No information KEYWORDS No information. SOURCE 2.7.2.10 SBR_ISOLATES. ORGANISM 2.7.2.10 SBR_ISOLATES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2083 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2083. str. SBR2083. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2083. str. SBR2083. ORGANISM str. SBR2083. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84613|g871734 isolate_name= SBR2083 BASE COUNT 106 a 86 c 123 g 83 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----UAAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GUAU---- ---|-AG--- AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- U-A-AUCU-A C-CUUU---G -GGUG-G-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------G-C AG-C--GG-C ---UCG-(-- --------AC 541 AU-------- -)-CGA--GA CA-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -AAUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--A-U CU(--UU-CG --)GG-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2100 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2100. str. SBR2100. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2100. str. SBR2100. ORGANISM str. SBR2100. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84629|g871750 isolate_name= SBR2100 BASE COUNT 106 a 86 c 123 g 83 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----UAAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GUAU---- ---|-AG--- AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- U-A-AUCU-A C-CUUU---G -GGUG-G-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------G-C AG-C--GG-C ---UCG-(-- --------AC 541 AU-------- -)-CGA--GA CA-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -AAUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--A-U CU(--UU-CG --)GG-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1003 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1003. str. SBR1003. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1003. str. SBR1003. ORGANISM str. SBR1003. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84451|g871572 isolate_name= SBR1003 BASE COUNT 96 a 102 c 144 g 72 t 3962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGGAGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UCUCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GAG--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---G -GGUG-G-GG 421 -AAU-AA-CG A--------- ------UC-- C(-GAAA-)G -GGUC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-C AG-C--GG-C ---ACC-(-- --------GC 541 AU-------- -)-GGU--GA CA-GU----U GU--UAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCU--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-U-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A C-GAAA-U-C CC(--UC-UG --)GG-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2084 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2084. str. SBR2084. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2084. str. SBR2084. ORGANISM str. SBR2084. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84614|g871735 isolate_name= SBR2084 BASE COUNT 95 a 102 c 142 g 70 t 3967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... NNNN-GGC-G -UGC-CU--A ACAC-ACGCA A-GUC-GAAC 121 G--GG-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UCUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|GAG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---G -GGUG-G-GG 421 -AAU-AA-CG A--------- ------UC-- C(-GAAA-)G -GGUC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-C AG-C--GG-C ---ACC-(-- --------GC 541 AU-------- -)-GGU--GA CA-GU----U GU--UAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCU--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGU)-GGGC ----GG-U-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A C-GAA--A-U CC(C-UC-UG --)GG-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2036 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2036. str. SBR2036. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2036. str. SBR2036. ORGANISM str. SBR2036. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84575|g871696 isolate_name= SBR2036 BASE COUNT 100 a 99 c 140 g 73 t 3964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CG-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|GAG--- AGUG-GUGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---G -GGUG-G-GG 421 -AAU-AA-CG A--------- ------UC-- C(-GAAA-)G -GGUC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-C AG-C--GG-C ---ACC-(-- --------GC 541 AU-------- -)-GGU--GA CA-GU----U GU--UAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCU--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-U-- CGG-N|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 C-A-AG-G-A U-GAA--A-U CC(C-UC-UG --)GG-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.8-GREEN 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.8 GREEN_SULFUR_BACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.8 GREEN_SULFUR_BACTERIA. ORGANISM 2.8 GREEN_SULFUR_BACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G28 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G28.. ACCESSION No information KEYWORDS No information. SOURCE clone G28. ORGANISM clone G28. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91280|g987028 BASE COUNT 83 a 53 c 80 g 62 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 .....AAG|U CAG---UGGU G-AAA-UC-C UG-UGG-C(- UU-A)A-CUG -CA-G-AAC- 1321 -UUCC-AUAG A-UAC-UGCA A-AUCUU-GA GUU-----CG G-AA-GAGAG AAG-C|GGAA 1381 UU-CCAGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCUUG-- ---------- ---------- ---------G 1501 UCC--GU-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -AU-A----- -C-------- 1681 -(GUU-AG)U A--------- ---------- ---------- --------U- -CCAGY-GCC 1741 GC--AC---- -----(KAA- ---C)G-CA- UUAA-GUA.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G37 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G37.. ACCESSION No information KEYWORDS No information. SOURCE clone G37. ORGANISM clone G37. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91289|g987037 BASE COUNT 91 a 65 c 101 g 85 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- SCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CAG---UGGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCC-UCUG A-UAC-UGCA U-AUCUU-GA GUU-----CG G-AA-GAGAG AAG-C|GGAA 1381 UU-CCAGGU- GUA-GUA(-G UGAAA)-UAC -GU-AGAU-A UC-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCUUG-- ---------- ---------- ---------G 1501 UCC--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -AU-GC---- ---------- 1681 -(-AU-UU)- ---------- ---------- ---------- -------GUA -UCCAG-UGC 1741 CG--CM---- -----(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2099 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2099. str. SBR2099. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2099. str. SBR2099. ORGANISM str. SBR2099. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84628|g871749 isolate_name= SBR2099 BASE COUNT 93 a 103 c 142 g 69 t 3969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGN-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--CU----- -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GG (--GC----- ---------- ---------- 241 --------GA -)CC-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|-AG--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--UCU-U C-CUUC---G -AGUG-G-GG 421 -AAC-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUUCC-GC 481 AU-AAU---- ---------- -------A-C CC-U--GG-G ---GCU-(-- --------AC 541 G--------- -)-AGC---C UC-AG----G AU--CAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----GAAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UU- CGA------- -----UU-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -ACUGG-A-G 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGAA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2086 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2086. str. SBR2086. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2086. str. SBR2086. ORGANISM str. SBR2086. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84616|g871737 isolate_name= SBR2086 BASE COUNT 102 a 96 c 139 g 70 t 3969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGUG-GA (--GC----- ---------- ---------- 241 --------AA -)CC-CAUGA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|UAG--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CUUC---G -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- C(-GAAA-)G -GGAC-G--C UAAUACCGNA 481 UG-AU----- ---------- -------A-- UG-C--CG-C ---CUU-(-- --------UU 541 AA-------- -)-GAG---G UG-GA----C AU--CAAA-- ---GCUGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUAG--C- G--CUU---- 661 ----GAAG-- AGG---G-|G CCCGC----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CGA------- -----UC-AG 781 U-AU-C-CG| -G-UCU--(G -AGA)-GGGC ----GG-A-- CGG-A|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUGU U-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGAC|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-A UU(--UU-CG --)GA-UCGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_E 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52548 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; specif. rel. env.OS-9 BASE COUNT 93 a 94 c 108 g 79 t 4002 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ....UG|--- -AAAG----- ---------- -UC----CGU 1981 -GUC-C--(- GAAA-)-GGG -A-UCC---- ---------- ---------- --(------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -----A-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUNC-N-CC -UA--GGGC- 2821 C-ACA-CA-C GUA--CUACA AUGGG-U-GC -UA--CAAUG GG------C- GA-AGU-C(G 2881 -CGA)GACG- ---------- GA-GGUAA-U CCCAA-AAAA -GC-A-CUC- UCAGUUCAGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OPI-6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone OPI-6.. ACCESSION No information KEYWORDS No information. SOURCE clone OPI-6. ORGANISM clone OPI-6. REFERENCE 1 AUTHORS Kopczynski,E.D., Bateson,M.M. and Ward,D.M. TITLE Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms JOURNAL Appl. Environ. Microbiol. 60, 746-748 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22046 BASE COUNT 314 a 307 c 424 g 237 t 3094 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCCCG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CGCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AGU|-CG--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCAG---G -AGAG-G-GG 421 -GAU-AG-CC C--------- ------CG-- C(-GAAA-)G -UGGG-G--G UAAUACG-CG 481 UA-CG----- ---------- -------C-U CU-C--C-GG ---UGC-(-- --------AC 541 AA-------- -)-GCG---C CG-GA----G AG--GAAA-- ---GGUGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ ---GGGA--| -CCUGC--C- G--CUC---- 661 ----CUGG-- AUG---G-|G CCCGN----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CUCAAU-- GG-GU-(GAA A)-GNN-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-GC-G-A U-GAA--G-G UC(--UU-CG --)GN-UUNN NAA--GCCC| UUUU-GU-AG 1021 --GG-AAC-- GA-AAAA-CU --CGC----( -------UUG ---------) ---G-CG-AG 1081 ---------- -------C-C U-GA-CGGU- A-CCC-U-AC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-G) U-A-C-AGAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CGA---GGGU U-AAA-GA-C CU-UCG-C(- UC-A)A-CGA -AG-G-GAA- 1321 -UGCU-CUCG A-UAC-UACA A-GUCUA-GA GUG-----CC G-AA-GAGGA GGC-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGGAA)-NNN -NU-AGAU-A NC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 UCG--GU-AA CUGACG-CUG AU-G------ -------CA- C-NAAA-G.. .......... 1561 .......... ...(...... ....)..... .......... .......... ..CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-UGG -AC------- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- ---------G -UUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GCAUC C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-U ---GGGU--- -AA----AGC 1981 -GGA-U--(- GAAA-)-GUC -C-GUGU--- ---------- ---CC----- --(G------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| AUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UC ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-UCA-CA-C GUA--CUACA AUGGG-C-GC -CA--CAAUG GGC---G-A- -A--GU-C(G 2881 -CAA)GACG- ---------- GA-GGGAA-U CCCAA-AAAA -GC-G-CUC- UCAGUUCAGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AG..(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pld.phclth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelodictyon phaeoclathratiforme str. BU-1. ACCESSION No information KEYWORDS No information. SOURCE Pelodictyon phaeoclathratiforme str. BU-1. ORGANISM Pelodictyon phaeoclathratiforme. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE Phylogeny and molecular fingerprinting of green sulfur bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08108|g1922907 isolate_name= BU-1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 347 a 288 c 389 g 279 t 3073 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GWN-AAAN 121 G--A------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAC -GU-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -AAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--A CAAUACC-AG 481 AU-GAA---- ---------- -------G-C AG-C--GACA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U GU-UC----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUG---A-|A CCUAU----- -AU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU K-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUCC| UUUU-GU-AG 1021 --AG-GAA-- GA-AUAU-CC --CGG----( ------UUUA ---------) ---C-CG-G- 1081 ---------- -------A-C U-GA-CGGU- A-CUC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CNUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GG-CC- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAU- 1321 -GGCU-UCCG A-UAC-UGUC G-GCCUA-GA GUC-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCC-C---(G CAA)GGUG-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UG|--- -------G-C ---GACU--- -AA----ACU 1981 -CAU-U--(- GAAA-)-GAU -G-AGGU--- G--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- -----G---| AGU-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGU-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GUUAA-U CCCUU-AAAA -GC-U-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GCCUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGUGUGU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pld.clathr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelodictyon clathratiforme str. PG. ACCESSION No information KEYWORDS No information. SOURCE Pelodictyon clathratiforme str. PG. ORGANISM Pelodictyon clathratiforme. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE Phylogeny and molecular fingerprinting of green sulfur bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08106|g1922900 isolate_name= PG NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 361 a 300 c 397 g 280 t 3038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......AAA 121 R--GG----- -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-AC (--AA----- ---------- ---------- 241 --------NG -)GU-UGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAU -AU-AUAGG- WAA--UCU-G C-CCUU---W -GGAC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--A CAAUACC-AG 481 AU-GAA---- ---------- -------G-C AG-C--GACA ---AUC-(-- --------GC 541 AU-------- -)-GGW---U GU-WC----U GC--CAAA-- ---RA----- ---------- 601 --(------- ---WUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUG---A-|A CCUAU----- -AU|----MC C--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GW-AAC-GG) -C-UUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(WACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUW D-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUCC| UUUU-GU-AG 1021 --AG-GAA-- GA-AUAU-CC --CGG----( ------UUUA ---------) ---C-CG-G- 1081 ---------- -------A-C U-GA-CGGU- A-CUC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GG-CC- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAU- 1321 -GGCU-UCCG A-UAC-UGUC G-GCCUA-GA GUC-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UG|--- -------G-C ---GACU--- -AA----ACU 1981 -CAU-U--(- GAAA-)-GAU -G-AGGU--- G--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- -----G---| AGU-CG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGU-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GUUAA-U CCCUU-AAAA -GC-U-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAG- GA-GU-ACCC -AHA-G-NMC 3121 UCNC...... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.phbact 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium phaeobacteroides str. 2430. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium phaeobacteroides str. 2430. ORGANISM Chlorobium phaeobacteroides. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE bacteria Phylogeny and molecular fingerprinting of green sulfur JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08104|g1922264 isolate_name= 2430 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 380 a 296 c 407 g 305 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..GUN-AAAR 121 G--A------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-GC (--UW----- ---------- ---------- 241 --------CG -)GC-UGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|--U--A CUUG-GHGC- 361 -A-AG-GG-U GAGU---AAU -GU-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -GAU-AA-CC U--------- ------CG-- A(-GAAA-)U -CGAG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U AU-GY----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--Y- G--CCA---- 661 ----AAGG-- AUG---A-|A CCUAU----- -AU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AKA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU K-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUCC| UUUU-GU-GG 1021 --AG-GAA-- GA-AUAU-CC --CGA----( ------UUUA ---------) ---U-CG-GG 1081 ---------- -------A-C U-GA-CG-U- A-CUC-C-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CUUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-UU- 1261 C-AU-AAG|U YGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAA- 1321 -GGCU-UCCG A-UAC-UGUG A-GUCUA-GA GUC-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-AA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UG|--- -------C-C ---AAUU--- -AA----ACU 1981 -CCC-U--(- GAAA-)-GGG -A-G-GU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AAU-UG-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGU-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GUUAA-U CCCUU-AAAA -GC-U-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAY- -Y-GU-ACCC -AAA-G-CCG 3121 C--------- ---------- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- -----GU-UU A-AGGU-AAG AYU-GG-UA- ACU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. ......GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.phvibr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium phaeovibrioides str. 2631. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium phaeovibrioides str. 2631. ORGANISM Chlorobium phaeovibrioides. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE Phylogeny and molecular fingerprinting of green sulfur bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08105|g1922265 isolate_name= 2631 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 347 a 283 c 394 g 286 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.GGCN A-GNN-AAAG 121 G--G------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAU -GU-AUAGG- UAA--UCU-G C-CCUU---A -GGAC-U-GG 421 -CAU-AA-CC U--------- ------CG-- A(-GAAA-)U -CGAG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAGN-- AUG---A-|A CCUAU----- -AU|----CC C--AUCA-G- GUA-G---UU 721 GG-CA-GG-( AU-AAU-AG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU K-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CG-C-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUCC| UUUU-GU-AG 1021 --AG-GAA-- GA-ACAU-GU --CGG----( ------UUUA ---------) ---C-CG-GC 1081 ---------- -------A-C U-GA-CGGU- A-CUC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAU- 1321 -GGCU-UCCG A-UAC-UGUA A-GUCUA-GA GUC-----UC G-GA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 CCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UU|--- -------G-C ---GACU--- -AA----ACC 1981 -UCC-U--(- GAAA-)-GGG -A-GGGU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGU-CG-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGC-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGUG- ---------- GA-GGAAA-U CCCUU-AAAA -GC-U-GUC- UCAGUCCGGA 2941 U--GGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGAU(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.vibrio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium vibrioforme str. 6030 DSM 260. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium vibrioforme str. 6030 DSM 260. ORGANISM Chlorobium vibrioforme. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 260 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62791 isolate_name= 6030 BASE COUNT 399 a 332 c 456 g 316 t 2873 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~U UUUACAACGG AGAGUN(U-G A)U-CCU|-G 61 GCUCAG-GAC -NAAC-GC-- UGGC-GNC-N -UGC-CU--A ACAC-AUGCA A-GUC-AAAG 121 G--A------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GU-AUAGG- UAA--GUU-G C-CUAC---A -GGAC-C-GG 421 -CAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--A CAAUACC-GG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U AU-GU----U GU--UAAAU- ---CA----- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GUAG-- AUA---A-|G CCUAU----- -AU|----UC C--AUCA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U CC(--UU-CG --)GG-AUGU AAA--GUCC| UUUU-GC-AG 1021 --AG-GAA-- GA-ACAU-GC --UGG----( ------UUUA ---------) ---C-CG-GC 1081 ---------- -------A-G U-GA-CGGU- A-CUC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-AU- 1261 A-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-ACA- 1321 -UGCU-UCCG A-UAC-UGUU A-UUCUA-GA GUG-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCG--AC-AA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--A 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG AAA-GG|--- -------C-U ---GGCU--- -AA----ACC 1981 -UCC-U--(- GAAA-)-GGG -A-GGGU--- U--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGC-CA-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--AUACA AUGGU-A-AC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GGAAA-U CCCUU-AAAA -GU-U-AUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCU-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-UGG- GA-GU-ACCC -GAA-G-ACG 3121 C--------- ---------- ---------- ---------- -----(---- -GUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GC-GU-UU A-AGGU-AAG ACC-AG-UA- ACU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.limico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium limicola str. 8327. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium limicola str. 8327. ORGANISM Chlorobium limicola. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M31769 isolate_name= 8327 BASE COUNT 396 a 334 c 437 g 311 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-AAAG 121 G--A------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -CAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U AU-GU----U GU--UAAAU- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUG---A-|G CCUAU----- -GU|----UC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-AA- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--AUCC| UUUU-GC-UG 1021 --GG-GAC-- GA-AUAG-GU --CGG----( ------CUUG ---------) ---C-CG-AC 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UC-A)A-CAC -AU-G-CAC- 1321 -GGCU-UCCG A-UAC-UGUC A-GUCUU-GA GUC-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGNN-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AAA-UG|--- -------U-U ---AGCU--- -AA----AGC 1981 -UCC-U--(- GAAA-)-GGG -A-GCGU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGC-G-AC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GGAAA-U CCCUU-AAAA -GU-C-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAG- GA-GU-ACCC -AAA-G-ACG 3121 U--------- ---------- ---------- ---------- -----(---- -CCGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GC-GU-UU A-AGGU-AAG ACU-GG-UA- ACU-GGGA-C 3301 U---AAGNN- GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.limic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium limicola str. 6230. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium limicola str. 6230. ORGANISM Chlorobium limicola. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE bacteria Phylogeny and molecular fingerprinting of green sulfur JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08102|g1922255 isolate_name= 6230 NB: Added by Bergey's to RDP Release 6.0 tree GB note:f. thiosulfatophilum BASE COUNT 372 a 314 c 420 g 307 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GNGCU--A ACAC-AUGCA A-GUC-AAAG 121 G--CU----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|--G--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAU -GU-AUAGG- UAA--UCU-G C-CCUU---U -GGUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--A CAAUGUC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAVG-- AUG---A-|G CCUAU----- -AU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CGC--GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--AUCC| UUUU-GC-AG 1021 --GG-GAC-- GA-AUAA-GU --CGG----( ------CUUG ---------) ---C-CG-AC 1081 ---------- -------U-C U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CC- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAC- 1321 -GGCU-UCCG A-UAC-UGUC G-GUCUA-GA GUC-----UC G-AA-GAGGA AGG-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-GAWA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UG-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCC-CGCC(G CAA)-----G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AUA-UU|--- -------G-C ---AGCU--- -AA----ACU 1981 -CCC-U--(- GAAA-)-GGG -A-G-GU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| AGC-UG-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGC-A-GC -UA--CAGAG GGC---A-A- -A--AC-C(G 2881 -CGA)GGUA- ---------- GA-GUUAA-U CCCUU-AAAA -GC-U-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAG- GA-GU-ACCC -AAA-G-UCG 3121 C--------- ---------- ---------- ---------- -----(---- -UCGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GC-GU-UU A-AGGU-AAG NCU-NG-UA- ACUUGGGA-C 3301 U---AAGNC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.tepidu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium tepidum str. NZC. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium tepidum str. NZC. ORGANISM Chlorobium tepidum. REFERENCE 1 AUTHORS Wahlund,T.M., Woese,C.R., Castenholz,R.W. and Madigan,M.T. TITLE A thermophilic green sulfer bacterium from New Zealand Hot Springs, Chlorobium tepidum sp. nov. JOURNAL Arch. Microbiol. 156, 81-90 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58468 isolate_name= NZC BASE COUNT 379 a 316 c 433 g 305 t 2943 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-AAAG 121 U--UU----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|-AG--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-AUAGG- UAA--UCU-G C-CUUU---U -GGUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGG-A--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---AUC-(-- --------GC 541 AU-------- -)-GGU---U AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAAG-- AUG---A-|G CCUAU----- -GU|----UC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GCC-UN- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--AUCC| UUUU-GC-AG 1021 --GG-GAC-- GA-AGAG-GU --CGG----( ------CUUG ---------) ---C-NG-GC 1081 ---------- -------U-G U-GA-CGGU- A-CCC-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CNCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-NA-UC- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAC- 1321 -GGCU-UCCG A-UAC-UGUU G-AUCUA-GA GUC-----UC G-AA-GAGGA AGG-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CNAG- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 UCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AUA-UU|--- -------G-C ---AGCU--- -AA----ACC 1981 -UCC-U--(- GAAA-)-GGG -A-GNNU--- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGC-UG-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCN-UU-A |-CA--AUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-GG 2761 G-AG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--AUACA AUGGC-G-AC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CAA)GGCA- ---------- GA-GGGAA-U CCCAA-AAAA -GU-C-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAG- GA-GU-ACCC -AAA-G-ACG 3121 C--------- ---------- ---------- ---------- -----(---- -UCGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GC-GU-UU A-AGGU-AAG ACU-GG-UA- ACU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clt.sulfur 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Clathrochloris sulfurica" str. 1. ACCESSION No information KEYWORDS No information. SOURCE "Clathrochloris sulfurica" str. 1. ORGANISM "Clathrochloris sulfurica". REFERENCE 1 AUTHORS Witt,D., Bergstein-Ben Dan,T. and Stackebrandt,E. TITLE Nucleotide sequence of 16S rRNA and phylogenetic position of the green sulfur bacterium Clathrochloris sulfurica JOURNAL Arch. Microbiol. 152, 206-208 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53184 isolate_name= 1 BASE COUNT 345 a 284 c 379 g 273 t 3095 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ......GG-U GAGU---AAG -GC-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -GAU-AA-CC U--------- ------CG-- A(-GAAA-)U -CGAG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AGGG-- AUG---A-|G CCUAU----- -GU|----UC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-AA- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -NUUGG-A-A 841 (CUGA-GA-C NCG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUNUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCNA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--AUCC| NUUU-GU-CA 1021 --GG-GAC-- GA-AUAU-GC --UGG----( ------CUUG ---------) ---C-CA-GC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-AC G-AA--UNAG ---------C 1141 -CAGGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-NGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CC- 1261 G-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAC- 1321 -GGCU-UCCG A-UAC-UGUC G-GNNUA-GU GUC-----UC G-AA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGAAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CAAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUN-- ---------- ---------- ---------G 1501 UCG--AA-GA CUGAUG-CUC AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-NU-UNG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CN--CA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAG 1801 GCC-C---(G CAA)---G-G GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUN AUA-UU|--- -------G-C ---AGCU--- NAA-----AC 1981 -UCC-U--(- GAAA-)-GGG -A-NNNU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGC-UN-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-CUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--GUU- 2281 AG--UUAC-N AU-AAG---- ---------- ---------- ----(---GU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAC-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GA -NAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGU-A-GC -UA--CAAAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGCA- ---------- GA-GGAAA-U CCCA--AAAA -GC-U-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -NGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGCC- GUC-AAG--- --NNA-UGGA A--GU-CAG- GA-GU-ACCC -AAA-G-CC. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pld.luteol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelodictyon luteolum str. 2530. ACCESSION No information KEYWORDS No information. SOURCE Pelodictyon luteolum str. 2530. ORGANISM Pelodictyon luteolum. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE Phylogeny and molecular fingerprinting of green sulfur bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08107|g1922903 isolate_name= 2530 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 370 a 305 c 416 g 296 t 2989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ....G-HAAA 121 N--NN----- -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----RNG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -GAU-AA-CC U--------- ------CG-- A(-GAAA-)U -CGAG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AGNN-- NUG---A-|G CCUAU----- -GU|----UC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(HACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUCC| UUUU-GC-AG 1021 --GG-GAC-- GA-ACAU-GU --CGG----( ------UAUA ---------) ---C-CG-AC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAU- 1321 -GGCU-UCCG A-UAC-UGUA A-GUCUA-GA GUC-----UC G-GA-GAGGA AGA-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 CCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AUA-UU|--- -------G-C ---GACU--- -AA----ACC 1981 -UCC-U--(- GAAA-)-GGG -A-GGGU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGU-CG-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGC-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGUG- ---------- GA-GGAAA-U CCCUU-AAAA -GC-U-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU-CAN- NA-GU-ACCC -AAA-G-ACG 3121 N--------- ---------- ---------- ---------- -----(---- -UCGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --GC-GU-UU A-AGGU-AAG ACU-NN-UA- ACU-GGGA-C 3301 U---AAGUC- G-AA-CAAGN UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chl.vibri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlorobium vibrioforme str. 6132. ACCESSION No information KEYWORDS No information. SOURCE Chlorobium vibrioforme str. 6132. ORGANISM Chlorobium vibrioforme. REFERENCE 1 AUTHORS Overmann,J. and Tuschak,C. TITLE Phylogeny and molecular fingerprinting of green sulfur bacteria JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y08103|g1922266 isolate_name= 6132 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 347 a 289 c 398 g 283 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-GUN-AAAG 121 G--A------ -----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCG-GC (--UH----- ---------- ---------- 241 --------CG -)GC-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AG---- ---|--U--A CUUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-AUAGG- UAA--UCU-G C-CCUU---U -GGAC-U-GG 421 -GAU-AA-CC U--------- ------CG-- A(-GAAA-)U -CGAG-G--A CAAUACC-AG 481 AU-GAU---- ---------- -------G-C AG-C--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C AU-GU----U GU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AGGN-- AUG---A-|G CCUAU----- -GU|----YC C--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU U-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGCA|-GCAA CG-C-GC-GU 961 G-G-AU-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--ANCC| UUUU-GU-AA 1021 --GG-CAC-- GA-ACAU-GU --CGG----( ------UAUA ---------) ---C-CG-AC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-AGGG |-GUGG-C-- 1201 AAG-CNUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CGG---GGGU U-AAA-UC-C AU-GUG-C(- UU-A)A-CAC -AU-G-CAU- 1321 -GGCU-UCCG A-UAC-UGUG A-GUCUA-GA GUC-----UC G-GA-GAGGA AGA-U|GGAA 1381 UU-UYCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 CCG--AG-UA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- ---(------ ----)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UGG -UC-A----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------UG -AUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AUA-UU|--- -------G-C ---GACU--- -AA----ACC 1981 -UCC-U--(- GAAA-)-GGG -A-GGGU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGU-CG-UAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CA--AUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAU-UG-A A-CU-G-CCU --AC(-G--C AA)-GUA-GU -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 C-ACA-CA-C GUG--AUACA AUGGC-A-GC -UA--CAGAG GGC---A-A- -A--GC-C(G 2881 -CGA)GGUG- ---------- GA-GGAAA-U CCCUU-AAAA -GC-U-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGGA A--GU..... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.9-FLS.SI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.9 FLS.SINUSARABICI_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.9 FLS.SINUSARABICI_ASSEMBLAGE. ORGANISM 2.9 FLS.SINUSARABICI_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.1611 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 1611.. ACCESSION No information KEYWORDS No information. SOURCE clone 1611. ORGANISM clone 1611. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89306 BASE COUNT 54 a 41 c 73 g 35 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-CG| -G---U--(G -AGA)-GGGU ----CA-C-- CGG-C|CGAC -ACUGG-G-A 841 (CUGA-GA-C ACG)--G--- -------UCC -(UACG)--G GAG-GC-AG- N-A---GU-G 901 GG-GAAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GNAA CGCC-GN-GU 961 G-G-GU-G-A A-GAA--G-G CU(--CU-UG --)GG-UCGU AAA--GCCC| UUU--AG-CA 1021 --CG-GGA-- AC-A-AG-GG --AGC-UCA( G--GCGAAUA GG---U---) UGAG--N-UU 1081 ---------- -------U-U U-GA-CGGU- ACCGU-G-AA A--A--UAAG ---------C 1141 -A........ .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfr.thphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Deferribacter thermophilus str. BMA1. ACCESSION No information KEYWORDS No information. SOURCE Deferribacter thermophilus str. BMA1. ORGANISM Deferribacter thermophilus. REFERENCE 1 AUTHORS Greene,A.C., Patel,B.K. and Sheehy,A.J. TITLE Deferribacter thermophilus gen. nov., sp. nov., a novel thermophilic manganese- and iron-reducing bacterium isolated from a petroleum reservoir JOURNAL Int. J. Syst. Bacteriol. 47 (2), 505-509 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U75602|g2058494 isolate_name= BMA1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 346 a 389 c 533 g 283 t 2825 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-AGGG 121 G--G------ -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CAGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGUA---- ---|--C--- ACCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--CCU-A C-CCCG---C -AGAC-C-GG 421 -GAU-AA-CC C--------- ------AU-- C(-GAAA-)G -GUGG-G--C UAAUACU-GG 481 AU-GAG---- ---------- -------C-G CA-C--G-U- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- AU-GU----G UG--AAAAG- ---GCAGGC- ---------- 601 --(------- ---AUUAA-- ---)------ ---------| -GCUUG--C- G--CUG---- 661 ----CGGG-- AUG---G-|G CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GC-CG-(GAA A)-CGG-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UUUC-AG-UG 1021 --GG-GAA-- GA-AAGG-UC --CAG-GCA( G----UAAC- -----U---) GGUU-UG-GA 1081 ---------- -------U-U U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAGUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GG -C|-GU-GC- 1261 G-GU-AAG|U CUG---GGGU C-AAA-GC-C UA-CGG-C(- UC-A)A-CCG -UA-G-UAA- 1321 -GGCC-UCAG A-UAC-UAUC G-UGCUA-GA GUG-----CC G-GA-GAGGG UAG-C|GGAA 1381 UU-CCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGGAGG- AACA-CCGG- 1441 -U-U-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--GU-AA CUGACG-CUG AG-G------ -------UG- C-GAGA-GC- GU-GGG-GA- 1561 CC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-UGG -UG-GU---- ---------- 1681 -(UAG-UA)- ---------- ---------- ---------- -------GCC -AUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGU -UUAAUU-CG -(AUGCUA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---C-GG--- -AA----CCU 1981 -GCC-A--(- GAGA-)-UGG -U-GGGG--- UG-------- CCUGG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU A-)------- CCGGG----- ----AG---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--CUU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CGG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCC --CG(-GA-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGCC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-A-G-C- GA-ACC-C(G 2881 -CGA)GGCU- ---------- GA-GCGAA-U CUCAG-AAAG -CG-C-GCC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCAAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- UC-AU-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------AC UGGGGG-G-A G-CC-GU-CU A-UGGU-AUG GCU-GG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fls.sinusa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexistipes sinusarabici str. MAS 10 DSM 4947. ACCESSION No information KEYWORDS No information. SOURCE Flexistipes sinusarabici str. MAS 10 DSM 4947. ORGANISM Flexistipes sinusarabici. REFERENCE 1 AUTHORS Fiala,G., Woese,C.R., Langworthy,T.A. and Stetter,K.O. TITLE Flexistipes sinusarabici, a novel genus and species of eubacteria occurring in the Atlantis II Deep brines of the Red Sea JOURNAL Arch. Microbiol. 154, 120-126 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 4947 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59231 DSM 4947 = ATCC 49648 isolate_name= MAS 10 BASE COUNT 357 a 333 c 478 g 305 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUGGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-AGGG 121 G--G------ -----AAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UAGUA---- ---|--C--- NCCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UGA--CCU-A C-CCAU---U -AGAC-C-UG 421 -GAU-AA-CC C--------- ------GG-- C(-GAAA-)G -UUGG-G--C UAAGACA-GG 481 AU-GUG---- ---------- -------U-U AA-U--A-C- ---ACU-(-- --------UC 541 AU-------- -)-GGU---- GU-AU----U GA--UAAAG- ---GCAGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUUG--U- G--CUA---- 661 ----AUGG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AU 781 U-AG-G-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAG A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUCC| NUUU-UU-AC 1021 --GG-GAA-- GA-AAGU-UA --UUA-ACA( G----UAAC- -----U---) GGUU-AA-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGNNNUN-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GU- 1261 G-GU-AAG|U CGG---AGGU U-AAA-GG-C UA-CGG-C(- UN-A)A-CCG -UA-G-UAG- 1321 -GGCN-UUUG A-UAC-UAUC A-UGCUA-GA GUG-----UC G-GA-GGGGG NAG-C|GGAA 1381 UU-CCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGGAAG- AACN-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--AU-CA CUGACG-CUG AG-G------ -------UA- C-GAGA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--CG-CU-- -------A|G -GU-GU-UGG -AG-G----- -A-------- 1681 -(ACC-GA)C C--------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCGUC C|N|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-NGU -UUAAUU-CG -(AUGNUA-A C)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCCG--- -GA----GGG 1981 -ACU-A--(- GAGA-)-UAG -U-UCUG--- NU-------- --GCC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UN GC)------- GGN------- ----AG---| CGG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CAU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AUG-GA-U A-CU-G-CCC --GU(-GA-U AA)-ACG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-CG -UA--CAGAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- NA-GCGAA-U CCCUA-AAAG -CG-U-GCC- UUAGUUCGGA 2941 U-UGUAGUC- (UGCAAU-U- C)-GACUACA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCAAA)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- NUC-ACA--- --CCA-CGGG A--GU-UAG- UU-GU-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-C----- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CC-GN-UU A-UGGU-AUG ACU-GG-CA- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11970 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 71 a 45 c 85 g 55 t 4120 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |AGGCC-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GC-UA- 1261 G-AA-AAG|U UUG---GUGU G-AAA-UC-U UC-GGG-C(- UU-A)A-CCC -GG-A-AAC- 1321 -UGCA-CUGA A-AAC-UAUC U-GGCUA-GA GGA-----UC G-GA-GAGAG GAU-U|GGAA 1381 UU-CUCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GAGAGG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 ACG--GU-U- CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- -U-GGG-UA- 1561 GC-GAA-GA- --G(AUUA-G AUAC)-C... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Csg.arsena 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chrysiogenes arsenatis str. BAL-1 (T). ACCESSION No information KEYWORDS No information. SOURCE Chrysiogenes arsenatis str. BAL-1 (T). ORGANISM Chrysiogenes arsenatis. REFERENCE 1 AUTHORS Macy,J.M., Nunan,K., Hagen,K.D., Dixon,D.R., Harbour,P.J., Cahill,M. and Sly,L.I. TITLE Chrysiogenes arsenatis gen. nov., sp. nov., a new arsenate-respiring bacterium isolated from gold mine wastewater JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1153-1157 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81319|g1632777 isolate_name= BAL-1 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 389 a 338 c 466 g 318 t 2865 others ORIGIN 1 .......... .......... .......... .......... UGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-AAGG 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUC-AU (--UU----- ---------- ---------- 241 --------CG -)GU-GAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ACUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CUUU---A -AGCC-U-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CAC-(-- --------UC 541 CG-------- -)-GUG---- ---------- ----GAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -CCCAU--U- G--CUU---- 661 ----AUAG-- AUG---A-|G UCCGC----- -GC|----AU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UC-AU 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-AC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AC-(GUA A)-GUC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUCC| UUUA-GA-UG 1021 --GU-GAA-- GA-ACCG-AU --GUG-AGA( G----GAAA- -----U---) GCUC-AU-AU 1081 ---------- -------C-C U-GA-CGGU- A-GCC-A-UA G-AA--UAAG ---------C 1141 -UCCGGCU-A AAUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGU |-GGAG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---CAUU G-UAA-GU-U CA-GUG-C(- UU-A)A-CGC -UG-A-AAU- 1321 -UGGU-GCGG A-AAC-UGGA A-GACUA-GA GUA-----CU G-UA-GGGGA AAG-C|GGAA 1381 UG-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAUGG- AACA-CCGA- 1441 -A-A-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-UGG -CG-AGG--- ---------- 1681 -(--U-UA)- ---------- ---------- -C-------- -------CUU -GUCAG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---CUUUG-- -CU----CGG 1981 -UAU-A--(- GAGA-)-UAU -A-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAG-GG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CA-G-CCG --GA(-GU-- AA)-UCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UG -GA--CAAAG AGA-A-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CUCA--AAAA -CC-AUGUC- UUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AC)-A CUG-CGGUG- AUUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-GU-GCCA -GAA-G-CGG 3121 A-UGA-C-CG -AA-UC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAUAG-G-A A-UC-UU-CC A-AGGC-AGG ACU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A59p 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A59p.. ACCESSION No information KEYWORDS No information. SOURCE clone A59p. ORGANISM clone A59p. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91482|g987787 BASE COUNT 110 a 70 c 98 g 87 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GCCU-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- UAA-AAG-GU -G|-GC-UG- 1261 A-GA-AAG|U UGG---GUAU A-AAA-UC-C UA-AAG-C(- UU-A)A-CUU -UA-G-AUC- 1321 -UAUA-CUCA A-AAC-UACU U-AGCUA-GA GGG-----CA G-UA-GAGGC AAG-C|GGAA 1381 UG-GCCGGU- GUA-GCA(-G UAAAA)-UGC -GU-UAAU-A UC-GGUUAG- AACA-CCAA- 1441 -U-A-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 AAU--GU-AC CUGACA-CUA AA-U------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|G -GU-AU-UGG -AA-G----- ---------- 1681 -(CUC-GA)C C--------- ---------- ---------- --------CU -UCCAG-UAU 1741 CG--UUCUUC UASU-(-AA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-G...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A57n 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91480 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 98 a 69 c 113 g 80 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-AACC-CCC 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGN|G UAAA-GGGU- CCG-UAG-GU -G|-GU-UU- 1261 A-GU-UAG|U CCA---AGGU U-AAA-UA-C UU-CAGGC(- UC-A)ACCUG -AA-G-GGU- 1321 --GCU-UUGG A-AAC-GGCU A-AACUA-GA GGG-----NA U-UA-GGGGC UGA-U|GGAA 1381 CGGUCCGGU- GUA-GGA(-G UGAAA)-UCC -GU-UGAU-A UC-GACCGGG AACA-CCGA- 1441 -A-A-GC(-G AA-G)GCAU- -UCAGCUG-- ---------- ---------- ---------G 1501 GGU--GA-CC CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-AA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UCC---GAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------G|G -CU-AU-CUG -AA------- ---------- 1681 -(GUG---)- ---------- ---------- ---------- ---------U -GCAGCA-UU 1741 CG--GGUG-- --GC-(GAAS AUAC)G-CG- UUAA-GUAUU C|C|G-CCU- G-GA-AGUAC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10-PLANC 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10 PLANCTOMYCES_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.10 PLANCTOMYCES_AND_RELATIVES. ORGANISM 2.10 PLANCTOMYCES_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1-PLA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1 PLANCTOMYCES_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1 PLANCTOMYCES_SUBDIVISION. ORGANISM 2.10.1 PLANCTOMYCES_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.1 PIRELLULA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.1 PIRELLULA_GROUP. ORGANISM 2.10.1.1 PIRELLULA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.1.1 PIRELLULA_SCHLESNER_ISOLATES. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.1.1 PIRELLULA_SCHLESNER_ISOLATES. ORGANISM 2.10.1.1.1 PIRELLULA_SCHLESNER_ISOLATES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS140 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 140. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 140. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81939|g908873 isolate_name= Schlesner 140 BASE COUNT 376 a 347 c 477 g 315 t 2861 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GCAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUGGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CC-ACCAA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ AGUG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GC-GUGGU- U-A--CAU-A C-CUUC---A -GGAC-C-AG 421 -GAU-AG-CG U--------- ------UG-- G(-GAAA-)C -CGGC-A--G UAAUACU-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----GAAG-- AUU---G-|G ACUGC----- -GU|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-UG- CGA------- -----UG-GU 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-AUC -(UACG)--G AUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 ---G-GAA-- GGAAAUG-CU --AGG-GGG( -----UUAU- ---------) CCCU-UU-AG 1081 ---------- -------C-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- UCG-UAG-GC -G|-GC-CU- 1261 A-GA-AGG|U GAG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUC A-AAC-CACU A-GGCUUGAG GAA-----G- A-CA-GGGGU GAU-G|GGAA 1381 CU-UAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUAGGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GUC--UU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GC-UG-AGG -GA-A----- -C-------- 1681 -(UUC-CA)C A--------- ---------- ---------- --------UU -CUCUC-GGC 1741 CG--CA---- --GG-(GAA- ---A)C-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGAUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-UC-UUG ACA-UG|--- -------C-U ---UGAG--- -AG----UCU 1981 -CUA-U--(- GAAA-)-GUA -G-AGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-A-CG -GA--CAAAC GGA-C-G-C- GA-GG--C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUAG-AAAC -CG-U-GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-UCA-G-CU -AA-CCC--- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A A-GU-GC-CU A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS384 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 384. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 384. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81944|g914869 isolate_name= Schlesner 384 BASE COUNT 371 a 335 c 469 g 314 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GCAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUGGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CC-ACGAA GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ AGUG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GC-GUGGU- U-A--CAU-A C-CUUC---A -GGAC-C-AG 421 -GAU-AG-CG U--------- ------CG-- G(-GAAA-)C -UGGC-A--G UAAUACU-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----GAAG-- AUU---G-|G ACUGC----- -GU|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UG- CGA------- -----UG-GU 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-AUC -(UACG)--G AUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GG-AAG-- GA-AAUG-CU --AGG-GGG( -----UUAU- ---------) CCCC-UU-AG 1081 ---------- -------C-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- UCG-UAG-GC -G|-GC-UU- 1261 A-GA-AGG|U GAG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUC A-AAC-CACU A-GGCUU-GA GGA-----AG A-CA-GGGGU GAU-G|GGAA 1381 CU-UAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUAGGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GUC--UU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GC-UG-AGG -GA-A----- -C-------- 1681 -(UUC-CA)C A--------- ---------- ---------- --------UU -CUCUC-GGC 1741 CG--CA---- --GG-(GAA- ---A)C-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGAUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-UC-UUG ACA-UA|--- -------G-U ---UUGG--- -AA----UAC 1981 -UUN-C--(- GAAA-)-GUU -A-GUAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-UU-UUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-C- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-A-CG -GA--CAAAC GGA-C-G-C- GA-AG--C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUAG-AAAC -CG-U-GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AG-CAU)-A CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-UCA-G-CU -AA-CCC--- ---------- ---------- -----(---- -CUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A A-GU-GC-CU A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 1. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 1. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81938|g908879 isolate_name= Schlesner 1 BASE COUNT 378 a 355 c 472 g 310 t 2861 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-G-CA 121 C--------- -----GAGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CC-ACCCA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- ---|------ AGUG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GU-GUGGU- U-A--CGU-G C-CCUC---G -AGAC-CAGG 421 -GAU-AG-CG U--------- ------CG-- G(-GAAA-)C -UGGC-A--G UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGAGAUU- ---)------ ---------| -----C--C- G--CUC---- 661 ----GAGG-- AUU---G-|G ACCGC----- -AU|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GNC-UG- CGA------- -----UG-GU 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GU-UAG-- GA-AAUG-CA --UGG-UGG( -----UUAU- ---------) CCAU-CA-UG 1081 ---------- -------U-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- UCG-UAG-GC -G|-GC-CU- 1261 A-GA-AGG|U GAG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUC A-AAC-CACU A-GGCUUGAG GAA-----G- A-CA-GGGGU GAU-G|GGAA 1381 CU-UAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUAGGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GUC--UU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GC-UG-AGG -GA-A----- -C-------- 1681 -(UUC-CA)C A--------- ---------- ---------- --------UU -CUCUC-GGC 1741 CG--CA---- --GG-(GAA- ---A)C-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-U ---UGAG--- -AA----UCC 1981 -CUA-U--(- GAAA-)-GUA -G-AGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGC-A-CG -GA--CAAAC GGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUAG-AAAC -CG-U-GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGG-(UC -AGC-AU)-A CUA-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-CAA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CG A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS516 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 516. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 516. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81940|g908874 isolate_name= Schlesner 516 BASE COUNT 353 a 352 c 485 g 304 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GNAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G UGGUUUC-CC (--UUU---- ---------- ---------- 241 --------CG -)GG-GAGGC CAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GC-GUGGU- U-A--CAU-G C-CCUC---G -AGAC-C-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 UG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CUC---- 661 ----GAGG-- AUU---G-|G ACCGC----- -GU|----UC U--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GG-GAG-- GA-AAUG-CU --GGG-GGG( -----UUCU- ---------) CCCC-UC-AG 1081 ---------- -------U-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- GCG-UAG-GC -G|-GC-CU- 1261 A-GU-AGG|U GAG---GUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCG-CUUC A-AAC-CACU A-GGCUCGAG GAU-----G- G-CA-GGGGU GAU-G|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-CG-AGG -GG-A----- -C-------- 1681 -(CUC-CA)C A--------- ---------- ---------- --------UC -UUCUC-GGC 1741 CG--UA---- --GC-(GAA- ---A)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-U ---UAAG--- -AA----UCU 1981 -UCU-G--(- GAAA-)-CAG -A-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UU -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-A-CG -UA--CAAAG GGA-A-G-C- AA-AGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CCCAA-AAAG -CG-U-GCC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAU-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GUA-G-UCA 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CG A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCAC.... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS158 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 158. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 158. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81941|g914867 isolate_name= Schlesner 158 BASE COUNT 360 a 348 c 481 g 306 t 2881 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAG C--------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGGAG--- ---|------ AGCG-GCGG- 361 -A-AG-GG-A GAGU---AAU -GC-GUGGU- U-A--CGU-G C-CCUG---A -GGAC-C-GG 421 -GAU-AG-UG C--------- ------GG-- C(-GAAA-)G -CUUC-A--G UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------CC 541 AG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----UAGG-- AUC---G-|G ACCAC----- -GU|----GC U--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UG-GC 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GA-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-AUC -(UACG)--G AUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GG-GAG-- GA-AAUU-CU --AUA-GGG( -----UUCU- ---------) CUCU-AU-AG 1081 ---------- -------A-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 G-GU-AGG|U GAG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUC A-AAC-CACC A-GGCUUGAG GAU-----G- G-CA-GGGGU GAU-G|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -GU-UG-GGG -GG-A----- -C-------- 1681 -(UCU-CA)C A--------- ---------- ---------- --------UC -CUCCC-GGC 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AU-UUG ACA-UG|--- -------C-U ---UGAG--- -AA----CAC 1981 -UUU-G--(- GAAA-)-CUU -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGC-A-CG -GA--CAAAG GGA-A-G-C- AA-ANU-C(G 2881 -CGA)GAUC- ---------- GA-GCUAA-U CCCAA-AAAC -CG-U-GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGG-(UC -AGC-AU)-A CUA-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A A-GU-GC-CG A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCAC.... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS139 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 139. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 139. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81945|g914866 isolate_name= Schlesner 139 BASE COUNT 352 a 367 c 512 g 313 t 2832 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GGC-G -UGG-AU--U AGGN-AUGNA A-GUC-GUGC 121 G--GC-AG-C GG---G---- ---------- ---------- ---------- ---------C 181 CUCUCACCGU -GCUUUCUCA GUUGGAG-CU (--UA----- ---------- ---------- 241 --------CC -)GG-CUCUG GUUGAGAAGG UUGUGGUGAG AGG------- ---------- 301 ---------- ---------- ---------- -------UG- CCG|GCG--- AGCG-GCGU- 361 -A-AG-GG-A GAGU---AAC -GC-GUGGU- U-A--UGU-A C-CCUU---G -GGAC-C-GG 421 -GAU-AG-CG U--------- ------UG-- G(-GAAA-)C -UGGC-G--G UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UC 541 UG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGAGAUU- ---)------ ---------| -----C--C- G--CCC---- 661 ----AAGG-- AUC---A-|G ACCGC----- -GU|----UC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UU- AGA------- -----UG-GA 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GG-GAG-- GA-AAUA-UC --AGG-GGG( -----UUCU- ---------) CCCC-CU-GG 1081 ---------- -------U-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- GCG-UAG-GC -G|-GC-CU- 1261 A-GA-AGG|U GAG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -AGCG-UUUC A-AAC-CACU A-GGCUUGAG GGA-----G- A-CA-GGGGU GAU-G|GGAA 1381 CA-GUUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AACUGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -AUCACUG-- ---------- ---------- ---------G 1501 GUC--UC-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -GC-UG-GGG -GG-A----- -C-------- 1681 -(UUC-CA)C A--------- ---------- ---------- --------UC -CUCCC-GGC 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-U ---UGGG--- -AA----CCC 1981 -CUU-G--(- GAAA-)-CUU -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-G-CG -UA--CAAAG GGA-A-G-C- GA-AAU-C(G 2881 -CGA)GGUU- ---------- AA-GCUAA-U CCCAA-AAAG -CG-U-GCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CG A-AGGU-CAG CUC-GA-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS382 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 382. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 382. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81943|g1181250 isolate_name= Schlesner 382 BASE COUNT 356 a 347 c 477 g 303 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GCCG 121 C--CG----- -----ACAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --ACGGG--- ---|-AG--- AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GG-GUAGA- U-A--UGU-G C-CCUU---G -AGAC-C-AG 421 -GAU-AG-CG U--------- ------UG-- G(-GAAA-)C -CGGC-A--G UAAUACU-GG 481 AU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----CAAAU- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CUC---- 661 ----AAGG-- AUC---A-|G UCUGC----- -UU|----CC U--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UG- AGA------- -----UG-GG 781 U-AC-C-GG| -G-UGU--(G -AGA)-GCAU ----GA-C-- CCG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCAA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-UU 1021 --GG-GAG-- GA-AAUG-UA --UUU-GAG( -----UUAU- ---------) CUCU-UA-UA 1081 ---------- -------C-U U-GA-CCGA- U-CU--U-CA G-AG--GAAG ---------U 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-CGUA-C-- 1201 GAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GCGU- GCG-UAG-GC -G|-GC-CU- 1261 U-GC-AGG|U CGG---GUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCG-CCCG A-AAC-CGUG A-GGCUUGAG GAA-----A- G-CA-GGGGU GUG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-AUCAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CACACUG-- ---------- ---------- ---------G 1501 GCU--UU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -GC-UG-GGG -GG-A----- -C-------- 1681 -(UUC-CA)C A--------- ---------- ---------- --------UC -CUCCC-GGC 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-UC-UUG ACA-UG|--- -------U-U ---UAGG--- -AA----CCU 1981 -CUG-U--(- GAAA-)-GCG -G-AGGG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-G-CA -UN--CAAAG AGA-C-G-C- AA-UAN-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCAA-AAAG -UG-C-ACC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGG-(UC -AGC-AU)-A CUA-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-CCG 3121 C-CAA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GU-CU A-AGGU-CAG CUC-GA-CA- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.11a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 11a.. ACCESSION No information KEYWORDS No information. SOURCE clone 11a. ORGANISM clone 11a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89273 BASE COUNT 50 a 59 c 72 g 42 t 4153 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .........A A|-GGC--A- ACA------- -----UG-GG 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAU ----GA-C-- CCG-C|G-UC -AUUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -ACA-C-AUC -(UACG)--G AUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCUUA-- GG-GC-(GAA G)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCGC| UGUC-AA-UG 1021 --GG-GAG-- GA-AGUG-CA --UUG-GGG( -----UUAU- ---------) CCCC-UU-UG 1081 ---------- -------C-U U-CA-CCCA- U-CC--AAC- --AA--GCCA .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS302 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 302. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 302. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81942|g914868 isolate_name= Schlesner 302 BASE COUNT 364 a 338 c 483 g 298 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCG A-GUC-GUGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAUUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C-AAG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGA- 361 -A-AG-GG-A GAGG---ACA -AC-GUGGG- A-A--UCU-G C-CCUC---G -GGAC-G-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-CG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 UG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCC---- 661 ----GGGG-- AUG---A-|G CCCAC----- -GC|----CC U--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-UG| -G-UGU--(G -AGA)-GCAU ----GA-C-- CAG-C|C-UC -AUUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-GU-AG 1021 --AG-GAG-- CA-AAGG-UA --UUG-GGG( -----UUAU- ---------) CCCC-UU-UA 1081 ---------- -------U-U U-GA-GUGA- U-UC--U-AG G-AG--GAAG ---------G 1141 -AGAGGCU-A AGCUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAGC |-UCUC-C-- 1201 AAA-CGUUAU UC-GGUAUCA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GC -G|-GC-UC- 1261 U-AC-AGG|U GAG---AUGU G-AAA-GC-C CA-CGG-C(- CU-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUC A-AAC-CGUA G-GGCUA-GA GGG-----AU G-CA-GGGGU AUG-C|GGAA 1381 CA-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCUGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CAUACUG-- ---------- ---------- ---------G 1501 GCA--UU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -UC-UG-GGG -GG-A----- -C-------- 1681 -(CCU-CA)C A--------- ---------- ---------- --------UC -CUCCC-GGA 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------C-U ---UAGG--- -AA----UCU 1981 -CCG-U--(- GAAA-)-GCG -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-CU-A |-UC--UCU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CC-G-CCG --GC(-GU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AU -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGCA-A-CA -UA--CAAAG GGA-A-G-C- AA-ACU-C(G 2881 -UGA)GAGC- ---------- AA-GCAAA-U CUCAA-AAAG -UG-U-UGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AG-CAU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GA-GG-GCCC -GAA-G-UCA 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GU-GC-CG A-AGGC-CAG CUC-GA-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD41 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26228|g498431 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 69 c 83 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--ACU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C UUUAU-G-AC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGCC-A-CG -UA--CAAAG GGA-A-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCAAA-U CUCAA-AAAA -CG-U-GGC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.1.2 PIR.STALEYI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.1.2 PIR.STALEYI_SUBGROUP. ORGANISM 2.10.1.1.2 PIR.STALEYI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula marina. ACCESSION No information KEYWORDS No information. SOURCE Pirellula marina. ORGANISM Pirellula marina. REFERENCE 1 AUTHORS and Stackebrandt,E. Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. TITLE sequences on the topology of phylogenetic trees -- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences The influence of tachytelically (rapidly) evolving JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62912 DSM 3645 = IFAM 1313 = ATCC 49069 (T) BASE COUNT 358 a 338 c 474 g 302 t 2904 others ORIGIN 1 .......... .......... .......... ...CAAUUGA AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUCCGCGC 121 G--------- -----AUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGAGAG--- (--------- ---------- ---------- 241 ---------- -)---CUCGA GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- ---|------ AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAC -AG-GUGGU- UUA--UCU-A C-CCUC---G -GGUU-U-GG 421 -GAU-AG-CG U--------- ------CG-- G(-GAAA-)C -UGGC-G--G UAAUACC-AA 481 AU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--CCC---- 661 ----GGGG-- AUG---A-|G ACUGC----- -UC|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-GG| -G-CGU--(G -AGA)-GCGU ----GG-C-- CCG-U|C-UC -ACUGG-G-A 841 (CUGA-GA-U ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-GC-(GCA A)--CG-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG---A U-UAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAA-- GA---AA--- ---------( ------UUU- ---------) ---------- 1081 ---------- ---------- U-GA-CUGA- U-CC--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUC-G-- 1201 GAA-CGUUAU UC-GGAAUUA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 U-AC-AAG|U CAG---GUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCG-CUUG A-AAC-UGAG G-GCUUG-AG GGA-----G- A-UA-GGGGU GAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GUC--UC-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -AU-CG-AGG -GG-A----- -C-------- 1681 -(UCC-CA)C A--------- ---------- ---------- --------UC -UUCUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------U-U ---UAAG--- -AA----UCU 1981 -CCC-U--(- GAAA-)-GGG -G-AGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AG---| CUU-UU--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-CU-A |-UC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GU-G AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGAG-A-GU -AA-GCAAAU CC-------- --------(- 2881 ----)----- ---------- CA-G------ ------AAAA -C----GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-GGG- GU-GC-ACGC -GAA-G-UCG 3121 C-UAA-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-GC-GC-CG A-ACGU-GAA CUC-CG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula marina. ACCESSION No information KEYWORDS No information. SOURCE Pirellula marina. ORGANISM Pirellula marina. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS ATCC 49069 (T) = IFAM 1313 = DSM 3645 BASE COUNT 332 a 321 c 443 g 282 t 2998 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GCGC 121 G--------- -----AUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCGA GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- ---|------ AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAC -AG-GUGGU- UUA--UCU-A C-CCUC---G -GGUU-U-GG 421 -GAU-AG-CG U--------- ------CG-- G(-GAAA-)C -UGGC-G--G UAAUACC-AA 481 AU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----N--C- G--CCC---- 661 ----GGGG-- AUG---A-|G ACUGC----- -UC|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-GG| -G-CGU--(G -AGA)-GCGU ----GG-C-- CCG-U|C-UC -ACUGG-G-A 841 (CUGA-GA-U ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-UAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAA-- GA---AA--- ---------( ------UUU- ---------) ---------- 1081 ---------- ---------- U-GA-CUGA- U-CC--U-CA G-AG--GAAG ---------G 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUC-C-- 1201 GAA-CGUUAU UC-GGAAUUA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 U-AC-AAG|U CAG---GUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-N-NAC- 1321 -UGCG-CUUG A-AAC-UGUA G-GNNUU-GA GGG-----AG A-UA-GGGGU NAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GUC--UC-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -AU-CG-AGG -GG-A----- -C-------- 1681 -(UCC-CA)C A--------- ---------- ---------- --------UC -UUCUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-G...... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------U-U ---UAAG--- -AA----UCU 1981 -CCC-U--(- GAAA-)-GGG -G-NNNN--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AG---| CUU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-CN-N |-UC--UCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GU-G AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-G-CG -AA--CAAAG GGA-C-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCAAA-U CCCAG-AAAA -CG-C-GCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAN--- --NCA-CGAA A--GU-GGG- GU-GC-ACGC -GAA-G-UCG 3121 C-UAA-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-GC-GC-CG A-ACGU-GAA CUC-CG-CG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.spS678 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula sp. str. Schlesner 678. ACCESSION No information KEYWORDS No information. SOURCE Pirellula sp. str. Schlesner 678. ORGANISM Pirellula sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81947|g908878 isolate_name= Schlesner 678 BASE COUNT 367 a 344 c 479 g 311 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GAGA 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AAGA GUUUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGAA ACUCGG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCG-CGAA- 361 -A-AG-GG-A GAGU---AAC -GA-GUAGG- UUA--UCU-A C-CCCC---A -GGCC-C-GG 421 -GAU-AG-CU G--------- ------CG-- G(-GAAA-)C -UGCA-G--G UAAUGCC-GG 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------CC 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| ----CC--C- G--CCU---- 661 ----UGGG-- AGG---A-|G ACUGC----- -UU|----UG U--ACUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-CA 781 U-AG-C-GG| -G-CGU--(G -AGA)-GCGU ----GG-C-- CCG-U|C-UC -ACUGG-G-A 841 (CUGA-AA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCAA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-GU-AG 1021 --AG-GAG-- AA-A-GG-UC --UGA-U--( -----GAAGA ---------) --AU-CA-GA 1081 ---------- -------U-U U-GA-UCUA- U-UC--U-AG G-AG--GAAG ---------U 1141 -CGGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-CCGA-C-- 1201 AAA-CGUUAU UC-GGAAUUA -UU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-GC- 1261 G-GU-AAG|U GCG---GUGU G-AAA-UC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-CUGC A-UAC-UCCC G-UGCUG-GA GGG-----AG A-CA-GAGGU AAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UC-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------U|G -AU-UG-AGG -GC-CC---- -C-------- 1681 -(CCC-AU)A ---------- ---------- ---------- --------GG -CUCUC-GAU 1741 CG--CA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC AGG-CC-UUG ACA-UG|--- -------U-A ---CGGA--- UGC----UGC 1981 -CCG-U--(- GAAA-)-GCG -G-GUUAG-- UU-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GA---| AAC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-GC -CU--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGC-A-UA -UA--CAAAG GGA-U-G-C- U--ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCAAA-U CCCAA-AAAG -UA-U-GCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AG-CAU)-G CCA-CGGUG- AAUAU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-GGG- GG-GG-GCUU -AAA-G-UCG 3121 C-CGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CU A-GAGU-CAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2065 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2065. str. SBR2065. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2065. str. SBR2065. ORGANISM str. SBR2065. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84599|g871720 isolate_name= SBR2065 BASE COUNT 87 a 84 c 129 g 74 t 4002 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----GG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UC---- ---|------ AGCG-GCGU- 361 -A-AG-GG-A CAGG---AAC -AC-GUAGA- UUA--CCU-G C-CCUC---G -GGUC-U-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACC-AG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------UC 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCC---- 661 ----GAGG-- AUG---G-|G UCUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-AG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CUG-C|G-UC -AUUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUUUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS670 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 670. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 670. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81948|g908877 isolate_name= Schlesner 670 BASE COUNT 365 a 345 c 480 g 300 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CA (--GC----- ---------- ---------- 241 --------AA -)UG-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----CG---- ---|------ AGCG-GCGA- 361 -A-AG-GG-A GAGG---AAA -AC-UUAGG- U-A--CCU-G C-CUCU---A -GGAC-C-GG 421 -GAU-AG-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--G UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---GUC-(-- --------UC 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----GGAG-- AGG---G-|G CCUGA----- -GU|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-AG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CUG-C|C-UC -ACUGG-G-A 841 (CUGA-GA-U ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCAA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-CU-AG 1021 --GG-GAU-- GA-AGUG-CC --AGG-GGG( -----UUCU- ---------) CCCC-UU-GG 1081 ---------- -------U-U U-GA-CAGA- U-CU--U-AG G-AA--UAAG ---------C 1141 -UCGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGAG-C-- 1201 GAA-CGUUAU UC-GGAAUUA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GC-GU- 1261 G-GU-AAG|U GGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -AGCG-CUCC A-AAC-UACC A-CGCUC-GA GGG-----AG A-CA-GAGGU CAG-U|GGAA 1381 CU-UCGGGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAU-A UC-CGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 GUC--UC-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-UU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -AU-CG-AAG -GG-AU---- ---------- 1681 -(UCC-CA)U ---------- ---------- ---------- -------GUC -CUUUU-GGU 1741 CG--CA---- --CU-(GAA- ---A)A-AG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------U-A ---CGGA--- UUA----ACU 1981 -UGG-U--(- GAAA-)-GCC -A-GGCC--- AC-------- -GCUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGU------ ----GG---| AAC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-C AU-CAU---- ---------- ---------- ----(---UC ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GC(-GU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-U-UG -UA--CAGAG CGA-C-G-C- AA-ACU-C(G 2881 -UGA)GAGC- ---------- CA-GCAAA-U CGCAA-AAAG -CA-A-ACC- UCAGUACGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-GGG-(UC -AG-CAU)-A CCC-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGGG A--GU-GGG- GG-GN-ACCU -AAA-G-CCG 3121 U-GAU-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-U A-AC-GU-CU A-GGGU-GAA CUC-CG-CG- ACU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GA........ 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.stale2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula staleyi. ACCESSION No information KEYWORDS No information. SOURCE Pirellula staleyi. ORGANISM Pirellula staleyi. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81946|g914864 BASE COUNT 357 a 338 c 469 g 299 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GUGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAU -AC-GUAGG- A-A--CCU-A C-CUUC---G -GGUC-U-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-AG 481 AU-GAU---- ---------- ---------- ---------- ---GUU-(-- --------UC 541 CG-------- -)-AAC---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----GAAG-- AGG---G-|G CCUAC----- -GU|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GNC-AA- AGA------- -----UG-CG 781 U-AU-G-GG| -G-UGU--(G -AGA)-GCAU ----GC-C-- CCC-A|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-GU-AG 1021 --GG-GAU-- GA-AGUG-CU --AGG-GGG( -----UUCU- ---------) CCCU-CU-AG 1081 ---------- -------U-U U-GA-CUGA- A-CC--U-AG G-AG--GAAG ---------G 1141 -NCCGNCU-A AUCUC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GAGA |-GGCC-C-- 1201 ANA-CGUUAU UC-GGAUUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GC -G|-GU-CU- 1261 U-GU-AAG|U GGG---GUGU G-AAA-UC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCG-CUCC A-NAC-UACA A-GACUU-GA GGG-----GG A-UA-GAGGU AAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--CU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-GA- 1561 GC-ANA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- N-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -AC-CG-GAG -CU-CU---- ---------- 1681 -(-GC-AC)- ---------- ---------- ---------- -------AGG -GUUUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------C-U ---UAGG--- -AA----UCU 1981 -UCC-U--(- GAAA-)-GGG -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-NU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UN-G |-UC--CUU- 2281 AG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AU -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUNGU-G-CA -CA--CAAAG CGA-C-G-C- AA-NCU-C(G 2881 -UGA)GAGC- ---------- CA-GCUAA.. .......... .......... ...GUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AG-CAU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-GGG- GG-GG-ACCC -AAC-A-GCG 3121 C-UGC-C-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-A-A G-GC-GC-CU A-AGGU-CAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pir.staley 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pirellula staleyi. ACCESSION No information KEYWORDS No information. SOURCE Pirellula staleyi. ORGANISM Pirellula staleyi. REFERENCE 1 AUTHORS Woese,C.R. and Oyaizu,H. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34126 Former RDP Sids: Pln.staley NB: former name Planctomyces staleyi BASE COUNT 376 a 348 c 482 g 315 t 2855 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAAUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GUGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAU -AC-GUAGG- A-A--CCU-A C-CUUC---G -GGUC-U-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-AG 481 AU-GAU---- ---------- ---------- ---------- ---GUU-(-- --------UC 541 CG-------- -)-AAC---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----GAAG-- AGG---G-|G CCUAC----- -GU|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- AGA------- -----UG-CG 781 U-AU-G-GG| -G-UGU--(G -AGA)-GCAU ----GC-C-- CCC-A|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-GU-AG 1021 --GG-GAU-- GA-AGUG-CU --AGG-GGG( -----UUCU- ---------) CCCU-CU-AG 1081 ---------- -------U-U U-GAGCUGA- A-CC--U-AG G-AG--GAAG ---------G 1141 -GCCGGCU-A AUCUC-GUG( CCA--NNAGC CGCGGUA-A) U-A-C-GAGA |-GGCC-C-- 1201 AAA-CGUUAU UC-GGAUUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GC -G|-GU-CU- 1261 U-GU-AAG|U GGG---GUGU G-AAA-UC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCG-CUCC A-AAC-UACA A-GACUU-GA GGG-----GG A-UA-GAGGU AAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-AUCAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--CU-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -AC-CG-GAG -CU-CU---- ---------- 1681 -(-GC-AC)- ---------- ---------- ---------- -------AGG -GUUUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-UC-UUG ACA-UG|--- -------C-U ---UAGG--- -AA----UCU 1981 -UCC-U--(- GAAA-)-GGG -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AU -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGGU-G-CA -CA--CAAAG CGA-C-G-C- AA-ACU-C(G 2881 -UGA)GAGC- ---------- CA-GCUAA-U CGCAA-AAAA -UG-U-ACC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AG-CAU)-A CCG-CGGUG- AAUNU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- NUC-AAG--- --CCA-CGAA A--GU-GGG- GG-GG-ACCC -AAC-A-GCG 3121 C-UGC-C-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-A-A G-GC-GC-CU A-AGGU-CAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.1.3 SBR2006_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.1.3 SBR2006_SUBGROUP. ORGANISM 2.10.1.1.3 SBR2006_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2006 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2006. str. SBR2006. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2006. str. SBR2006. ORGANISM str. SBR2006. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84551|g871672 isolate_name= SBR2006 BASE COUNT 90 a 94 c 133 g 74 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- -------GAG U-UUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUAGN AACUC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- ---|------ AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GC-GUAGU- U-A--CGU-G C-CCCG---A -GGUU-C-GG 421 -AAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUGCC-GA 481 AU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------UC 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----CGGG-- AGC---G-|G ACUGC----- -GU|----CC U--ACUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAU ----GA-C-- CCG-U|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg8 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10942 library_source= marine snow associated BASE COUNT 373 a 310 c 460 g 316 t 2917 others ORIGIN 1 .......... .......... .......... ..GAAGGGUU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ----GUUUUA AAAAGAU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-UGAUU UUUAAAAC-- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- ---|------ AGCG-GCGA- 361 -A-AG-GG-A GAGU---AAC -GA-GUAGA- UA---CGU-A C-CCAA---G -GGUU-C-GG 421 -GAU-AG-CC A--------- ------UG-- C(-GAAA-)C -GGUG-A--G UAAUACC-GA 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UC 541 CG-------- -)-GA----- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCC---- 661 ----UUGG-- AGC---G-|G UUUGC----- -UU|----AC U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UU- AGA------- -----UG-CU 781 U-AG-C-GG| -G-UGU--(G -AGA)-G-AU ----GA-C-- CCG-U|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CAGG|AGCGA -GCS-GC-GU 961 G-C-UG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GAGC| UGUN-GU-AG 1021 --GG-GAG-- GG--GAG--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------U-U U-CA-CCGA- U-CC--U-AG G-AG--GAAG --------UC 1141 -ACAGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAC |-UGUG-C-- 1201 AAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 G-GU-AGG|U CAG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCG-UUUG A-AAC-CACU A-GUCUU-GG GGG-----GA U-CA-GAGGA GAG-C|GGAA 1381 CU-GAUGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-AUCAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GAU--CC-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUCU G--UA-CU-- -------A|G -UC-CG-UGG -GG-A----- ---------- 1681 -(CCC-AC)A ---------- ---------- ---------- --------UC -UUCUC-GGA 1741 CG--UA---- --GC-(GAA- ---A)G-UG- UUAA-GUACA G|C|G-CCU- G-GGANGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CAAGG CGGUGG-AGG A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C N)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUA ACA-UG|--- -------U-U ---UGAG--- -AA----UCU 1981 -CUG-U--(- GAAA-)-GCA -G-AGAG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CUC-UUACGU |----|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUC--CUACA AUGCA-A-CG -UA--CAAAG CGA-G---CG AA-AUC-G(C 2881 --GA)-GAU- ---------- CAAGCAAA-C CGCACAAAA- -CG-U-UGC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAU-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGG-(UC -AGC-AU)-A CUA-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GU-UGG- GG-GG-GCCC -GAA-G-UCG 3121 C-GAU-G-CU -AA-C-C--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGACGU-A-- --GC-GC-CG A-AGGU-CAA CUC-GA-UG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.2 PLANCTOMYCES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.2 PLANCTOMYCES_GROUP. ORGANISM 2.10.1.2 PLANCTOMYCES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.2.1 PLN.LIMNOPHILUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.2.1 PLN.LIMNOPHILUS_SUBGROUP. ORGANISM 2.10.1.2.1 PLN.LIMNOPHILUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2027 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2027. str. SBR2027. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2027. str. SBR2027. ORGANISM str. SBR2027. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84569|g871690 isolate_name= SBR2027 BASE COUNT 94 a 93 c 134 g 70 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGG 121 G--------- -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----A-C-CC (--GC----- ---------- ---------- 241 --------AA -)GG-G-G-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- ---|------ ACCG-GCGA- 361 -A-CG-GG-G UAGG---AUC -AC-GUAGG- UGA--CGU-A C-CCUC---A -GGGC-G-AG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACU-CG 481 AU-AAC---- ---------- -------C-U UC-C--C-AA ---UCG-(-- --------UG 541 AU-------- -)-AGA---A GG-GG----A AG--CAAU-- ---GGG---- ---------- 601 --(------- --UGUGAU-- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GAGG-- AGC---G-|G CUUAC----- -GC|----AG U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-CU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----NG-C-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GN-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC100 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64383 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: periph. rel. Pln./Pir. group BASE COUNT 259 a 236 c 349 g 203 t 3329 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGG 121 G--------- -----AG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- ---|------ ACCG-GCGA- 361 -A-CG-GG-G UAGG---AUC -AC-GUAGG- UGA--CGU-A C-CCCC---A -GGGC-G-AG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACU-CG 481 AU-AAC---- ---------- -------C-U UC-C--C-GA ---UCA-(-- --------UG 541 AU-------- -)-CGG---C UG-GG----A AG--CAAU-- ---GGG---- ---------- 601 --(------- --UGUGAU-- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GGGG-- AGC---G-|G CUUAC----- -GC|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-CU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCGC| UGUC-GG-AG 1021 --GG-GAU-- GA-AGUA-UA --CCA-GAG( -----CAAU- ---------) CUCU-GG-UA 1081 ---------- -------U-U U-GA-CAGA- G-CCU---CG G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-CA- 1261 U-CU-CAG|U CAC---GUGU G-AAA-UC-U UC-UGG-C(- UC-A)A-CCA -GA-A-AAC- 1321 -UGCG-CGUG A-AAC-UAGU U-GACUU-GA GUG-----AG G-UA-GGGGU GUG-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-AGAG-A UC-GGAAGG- AACG-CCAG- 1441 -C-A-GC(-G AA-A)GCGG- -CACACUG-- ---------- ---------- ---------G 1501 GCC--UU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CUA- G-CC-GU--A 1621 AAC-A-CUGA A--CA-CU-- -------G|G -AG-GA-CGG -GG-GC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GCC -UUCGU-GCU 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GU-UUG ACA-UG|--- -------C-A ---UGGA--- UUA----ACC 1981 -CGA-U--(- GAAA-)-GUC -G-GGCCAC- GC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GU---| ----GG-ACA |---.|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----...|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-GCA-CA-C GUG--CUACA AUGGC..... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS638 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 638. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 638. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81951|g914870 isolate_name= Schlesner 638 BASE COUNT 365 a 354 c 489 g 296 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGG 121 G--------- -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----A-C-CC (--GC----- ---------- ---------- 241 --------AA -)GG-G-G-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- ---|------ ACCG-CCGN- 361 -N-CG-GG-G UAGG---AUC -AC-GUAGG- UGA--CGU-A C-CCCC---A -GGGC-G-AG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACU-CG 481 AU-AAU---- ---------- -------C-U UC-C--U-GG ---UCG-(-- ---------U 541 GA-------- -)-UGA---U CG-GG----A AG--CAAU-- ---GGG---- ---------- 601 --(------- --UGAGAU-- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GGGG-- AGC---G-|G CUUAC----- -GC|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-CU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AGUA-UA --CGA-GA-( -----GCUAU C--------) -UCU--UGUA 1081 ---------- -------U-U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 U-CU-AAG|U CAG---GUGU G-AAA-UC-U UC-CGG-C(- UC-A)A-CCG -GA-A-AAC- 1321 -UGCG-CCUG A-GAC-UGGA U-GACUU-GA GUG-----AG G-UA-GGGGU GUG-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-AGAG-A UC-GGAAGG- NACG-CCAG- 1441 -C-A-GC(-G AA-A)GCGG- -CACACUG-- ---------- ---------- ---------G 1501 GCC--UU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CUA- G-CC-GU--A 1621 AAC-A-CUGA A--CA-CU-- -------G|G -AG-GA-CGG -GG-GC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GCC -UUCGU-UCU 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GU-UUG ACA-UG|--- -------C-A ---UGGA--- UCA----ACC 1981 -UGA-U--(- GAAA-)-GUC -G-GGCC--- AC-------- -ACUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGC------ ----GG---| AAC-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GC-G-(UUAA -GU)-CGCUA AA-------- CGAG-C--GA AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAAAG CGC-U-G-C- AA-GCC-U(G 2881 -CGA)AGGC- ---------- AA-GCUAA-U CGCAA-AAAG -CG-U-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-AUCC -GAA-G-UCG 3121 C-UGC-G-UG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACA-C-A G-GU-GC-CG A-AGAU-GAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS642 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 642. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 642. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81950|g908875 isolate_name= Schlesner 642 BASE COUNT 368 a 358 c 491 g 297 t 2862 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGG 121 G--------- -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----A-C-CC (--GC----- ---------- ---------- 241 --------AA -)GG-G-G-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- ---|------ ACCG-CCGN- 361 -N-CG-NN-N UAGG---AUC -AC-GUAGG- UGA--CGU-A C-CCCC---A -GGGC-G-AG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACU-CG 481 AU-AAU---- ---------- -------C-U UC-C--U-GG ---UCG-(-- ---------U 541 GA-------- -)-UGA---U CG-GG----A AG--CAAU-- ---GGG---- ---------- 601 --(------- --UGAGAU-- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GGGG-- AGC---G-|G CUUAC----- -GC|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-CU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-CC-(GAA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G UC(--GU-CG --)GA-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AGUA-UA --CGA-GA-( -----GCUAU C--------) -UCU--UGUA 1081 ---------- -------U-U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 U-CU-AAG|U CAG---GUGU G-AAA-UC-U UC-CGG-C(- UC-A)A-CCG -GA-A-AAC- 1321 -UGCG-CCUG A-GAC-UGGA U-GACUU-GA GUG-----AG G-UA-GGGGU GUG-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-AGAG-A UC-GGAAGG- AACG-CCAG- 1441 -C-A-GC(-G AA-A)GCGG- -CACACUG-- ---------- ---------- ---------G 1501 GCC--UU-UU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CUA- G-CC-GU--A 1621 AAC-A-CUGA A--CA-CU-- -------G|G -AG-GA-CGG -GG-GC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GCC -UUCGU-UCU 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GU-UUG ACA-UG|--- -------C-A ---UGGA--- UCA----ACC 1981 -UGA-U--(- GAAA-)-GUC -G-GGCC--- AC-------- -ACUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGC------ ----GG---| AAC-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GC-G-(UUAA -GU)-CGCUA AA-------- CGAG-C--GA AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAAAG CGC-U-G-C- AA-GCC-U(G 2881 -CGA)AGGC- ---------- AA-GCUAA-U CGCAA-AAAG -CG-U-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-AUCC -GAA-G-UCG 3121 C-UGC-G-UG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACA-C-A G-GU-GC-CG A-AGAU-GAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2102 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2102. str. SBR2102. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2102. str. SBR2102. ORGANISM str. SBR2102. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84631|g871752 isolate_name= SBR2102 BASE COUNT 98 a 96 c 136 g 62 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNGC-GGC-G -UGG-GU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----A-C-CC (--GC----- ---------- ---------- 241 --------AA -)GG-G-G-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- ---|------ AGCG-GCGA- 361 -A-CG-GG-G UAGG---ACA -AC-GUAGG- UAA--CGU-A C-CCCC---G -GGGC-G-AG 421 -GAC-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACU-CG 481 AU-AAA---- ---------- -------G-U UC-C--C-AG ---UCG-(-- --------UG 541 AU-------- -)-GGA---A GG-GG----A AC--CAAU-- ---GGG---- ---------- 601 --(------- --UGAGAU-- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GGGG-- AGC---G-|G CUUAC----- -GC|----AG C--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----CG-CU 781 U-AG-G-GG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UA- C-A---GU-C 901 GAG-AAUCUU C-GACAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.limnop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces limnophilus. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces limnophilus. ORGANISM Planctomyces limnophilus. REFERENCE 1 AUTHORS Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. and Stackebrandt,E. TITLE The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees -- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62911 ATCC 43296 (T) = IFAM 1008 geog_source= (West) Germany biol_source= surface lake water BASE COUNT 369 a 359 c 500 g 299 t 2849 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GAGG 121 G--------- -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----A-C-CC (--GC----- ---------- ---------- 241 --------AA -)GG-G-G-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- ---|------ ACCG-GCGA- 361 -A-CG-GG-G UAGG---AAU -AC-AUAGG- UAA--CGU-A C-CCUC---A -GGAC-G-GG 421 -GAU-AG-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--G UAAUACC-CG 481 AU-GUG---- ---------- -------A-U GU-C--A-G- ---GAU-(-- --------GU 541 GA-------- -)-AUG---C CU-GC----C AU--CAAA-- ---GG----- ---------- 601 --(------- --UGAGAUU- ---)------ ---------| -----C--C- A--CCU---- 661 ----GAGG-- AGC---G-|G CUUAU----- -GC|----AU C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UG- CGA------- -----UG-AU 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UGUC-GG-AG 1021 --GG-GAU-- GA-AGUG-UA --UGG-GA-( -----GCAAU C--------) -UCC--UGUA 1081 ---------- -------U-U U-GA-CAGA- G-CC--U-CG G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 AAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UACA-GGGU- GCG-UAG-GC -G|-GC-AU- 1261 U-UU-AAG|U CAG---GUGU G-AAA-UC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAC- 1321 -UGCG-CCUG A-GAC-UGGA U-UGCUC-GA GUG-----AG G-CA-GGGGU GUA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-AGAU-A UC-GGAAGG- AACG-CCAG- 1441 -C-A-GC(-G AA-A)GCGG- -UACACUG-- ---------- ---------- ---------G 1501 GCC--UU-GU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-A-AUGA G--CA-CU-- -------G|G -GG-GA-GGG -AC-GG---- ---------- 1681 -(-GU-CA)- ---------- ---------- ---------- -------CCG -UUCUU-UCC 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------G-U ---GGGA--- UUA----GUU 1981 -GGC-U--(- GAAA-)-GGU -C-AAUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-CA-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GC-G-(UUAA -GU)-CGCUA AA-------- CGAG-C--GA AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A--GUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGG-A-UG -UA--CAGAG GGA-C-G-C- CA-AGC-U(G 2881 -CGA)AGCC- ---------- GA-GCAAA-C CCCAA-AAAG -CA-U-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGCAAU)-A CGG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-GCCU -AAA-G-ACA 3121 C-UUG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGAGGA-C-G G-UG-UU-U- A-GGGC-GAA ACU-CG-UG- AUU-GGGA-C 3301 U---AAGUN- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.2.2 PLN.MARIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.2.2 PLN.MARIS_SUBGROUP. ORGANISM 2.10.1.2.2 PLN.MARIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.maris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces maris. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces maris. ORGANISM Planctomyces maris. REFERENCE 1 AUTHORS Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. and Stackebrandt,E. TITLE The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees -- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62910 ATCC 29201 (T) = NCIMB 2232 geog_source= Puget Sound BASE COUNT 288 a 267 c 367 g 233 t 3221 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .........C 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GCA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AAUG-CA --GAA-GG-( -----GUUAU C--------) -CCU-UU-UG 1081 ---------- -------U-U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUACCGUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U AGG---GUGU G-AAA-UG-C CA-GGG-C(- UC-A)A-CCU -UG-G-CAC- 1321 -GGCG-CUCU A-AAC-UGCU A-AACUUGAG UGA-----G- A-UA-GGGGU GUA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-GGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -UACACUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -UU-GG-GAG -GA-GC---- ---------- 1681 -(UUC-GG)- ---------- ---------- ---------- --------CU -CAUCC-GGA 1741 CG--UA---- --GC-(GAA- ---A)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-AU-UUG ACA-UG|--- -------C-U ---UGUA--- UUA----GCU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CGGU |GU-C(-GUG A)-GAUGU-C 2221 GC-G-(UUAA -GU)-CGCUG AA-------- CGAG-C--GA AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCG-G-CG -UA--CAAAG GGA-A-G-C- AA-AAU-C(G 2881 -CGA)GAUC- ---------- AA-GCAAA-U CCCAA-AAAG -CN-U-CGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAU-GAA- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-GUCC -AAA-G-U.. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS130 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 130. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 130. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81952|g908872 isolate_name= Schlesner 130 BASE COUNT 375 a 348 c 485 g 316 t 2852 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAG ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CGU-CC (--CUU---- ---------- ---------- 241 --------CG -)GG-AAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGGAA--- ---|------ AGUG-GCAU- 361 -N-CG-GG-G UAGUG--AAG -GC-GUAGG- UGA--CGU-A C-CCUC---A -GUCC-A-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAN-)C -CGUG-AC-U UAAUACC-GG 481 AU-AAU---- ---------- -------C-U CU-C--A-GA ---GUA-(-- ---------U 541 GG-------- -)-UGC---U UU-GA----G AG--CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CUG---- 661 ----GAGG-- AGC---G-|G CUUAC----- -GU|----GA U--AUUA-G- GUA-G---UU 721 GG-UG-AG-( UU-AAC-GG) -C-UCACC-A A|-GCC-UC- AGA------- -----UG-UC 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-AC-(GCA A)-GUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AAU--GC --AAG-AGG( -----GCUAU C--------) CCUC-UU-GU 1081 ---------- ---------U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUAC-CUU( UCC--ACAGC CGCGGUA-A) C-A-C-GUAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GU-UUA 1261 A-GU-AAG|U AGG---GUGU G-AAA-UG-C CA-GAG-C(- UC-A)A-CUU -UG-G-CAC- 1321 -GGCG-CUCU A-AAC-UGCU A-AACUU-GA GUG-----AG A-UA-GGGGU GUA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-GGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -UACACUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -UU-GG-GAG -GA-GC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GCA -UCUCC-GGA 1741 CG--UA---- --GC-(GAA- ---A)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-AU-UUG ACA-UG|--- -------C-U ---UGUA--- UUA----GCU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GC-G-(UUAA -GU)-CGCUG AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCG-G-CG -UA--CAAAG GGA-A-G-C- GA-NUU-C(G 2881 -CGA)GAAC- ---------- AA-GCAAA-U CCCAA-AAAG -CG-U-CGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-AUCC -AAA-G-UCG 3121 C-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CU A-AGAU-GAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.brasil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces brasiliensis. ORGANISM Planctomyces brasiliensis. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81949|g1181248 NB: AAGUCGUAACAAGGUAGCCGUAGGGGAACCUGCGGCUGGAUCACCUCCUU removed from 3' end BASE COUNT 280 a 265 c 372 g 233 t 3226 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ....CAAU-- GG-GC-(GAA A)-GCC-UGA CCAA|-GCGA UGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-AG-GG 1021 --GG-GAU-- GA-AA---CU ---------( -----UUCG- ---------) ---------G 1081 ---------- ---------U U-GA-CAGA- G-CC--C-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GA-UAG|U CAG---AUGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCC A-GGCUU-GA GUG-----AG A-CA-GGGGU GUG-U|GGAA 1381 CU-UCUCGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAU-A UG-AGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGA- -CACACUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|G -UU-GG-UGG -GA-AC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GUU -CUCAC-GGA 1741 CG--UA---- --GC-(AAA- ---A)G-UG- UUAA-GUACU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-A ---UGGA--- UUA----GCU 1981 -GGC-U--(- GAAA-)-GGU -C-AGUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUUG AA-------- CGAG-C--GC AACCC-CU-G |-UC--GCC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GA-G A-CC-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCG-G-CG -UA--CAAAG GGA-A-G-C- CA--CC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAG -CG-C-CGC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCAAU)-A CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GG-GGG- GG-GC-AUCC -UAA-G-UCA 3121 C-UGA-G-CU -AA------- ---------- ---------- -----(---- -UCU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-C-A G-GU-GC-CU A-AGAU-GAA CUC-CC-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS668 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 668. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 668. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81956|g914871 isolate_name= Schlesner 668 BASE COUNT 366 a 352 c 484 g 276 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGU-AGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----ACAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-GC (--UU----- ---------- ---------- 241 --------CG -)GC-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAGG--- ---|------ AGCG-CCAA- 361 -A-CG-GG-G UAGU---AAG -AC-AUCGG- -AA--CGU-A C-CCUC---U -UGUC-C-GG 421 -GAU-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--A UAAUACU-GG 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 AA-------- -)-GGG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----C--C- G--CGG---- 661 ----GAGG-- AGC---G-|G CCGAU----- -GC|----GA U--ACCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- AGA------- -----CG-UC 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAU ----GG-C-- CCC-C|A-CC -ACUGG-G-A 841 (CUGA-GA-U ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCU-AC-GU 961 G-C-GG-G-A U-GAA--G-C CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AA---GC ---------( -----GAAA- ---------) --------GC 1081 ---------- ---------U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -GCGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGCG-C-- 1201 AAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UACA-GGGU- GCG-UAG-GC -G|-GC-CA- 1261 G-UC-AGG|U CCG---GUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -GGCA-UUGG A-AAC-CGAU U-GGCUU-GA GUG-----AG C-UA-GAGGU ACA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAG-A UC-GGAAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-A)GCGG- -UGUACUG-- ---------- ---------- ---------G 1501 AGC--UU-GU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUCA G--UA-CU-- -------A|G -AC-GG-AGG -GA-GG---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------CCU -UUCUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-CG- AUAA-GUACU G|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-GC-UUG ACA-UG|--- -------C-U ---GGAA--- UUA----GUU 1981 -GGC-U--(- GAAA-)-GGU -C-AAUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAU-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCUUA AA-------- CGAG-C--GA AACCC-CU-G |-UC--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GAC-GA-G A-CC-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCG-G-CG -UA--CAAAG GGA-G-G-C- C--ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAG -CG-U-CGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GG-GGG- GG-GC-AUCC -UAA-G-UCA 3121 C-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-GU-GC-CU A-AGAU-GAA CUC-CC-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCCGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS664 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 664. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 664. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81955|g609221 isolate_name= Schlesner 664 BASE COUNT 355 a 356 c 493 g 265 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGU-AGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----ACA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAG---- ---|------ GAGC-GCAA- 361 -A-CG-GG-G UAGU---AAG -GC-AUCGG- -AA--CGU-A C-CCUC---U -UGUU-C-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-A--G UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---ACC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----C--C- G--CGG---- 661 ----GAGG-- AGC---G-|G CCGAU----- -GU|----GA U--ACCA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-UA- AGA------- -----CG-UC 781 U-AG-G-GG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CCC-C|A-CC -ACUGG-G-A 841 (CUGA-GA-U ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCU-AC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCGC| UGUC-AG-AG 1021 --GG-GAU-- GA-AA---GC ---------( -----GAAA- ---------) --------GC 1081 ---------- ---------U U-GA-CAGA- G-CC--U-CA G-AG--GAAG ---------C 1141 -GCGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGCG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UACA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 A-UC-AGG|U CCG---AUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -GGCA-UUGG A-AAC-CGGU G-GGCUU-GA GUG-----AG C-UA-GAGGU GCA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAG-A UC-GGAAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -UGCACUG-- ---------- ---------- ---------G 1501 GGC--UU-GU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUCA G--UA-CU-- -------A|G -AC-GG-AGG -GG-GG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CCC -UUCUC-GGU 1741 CG--UA---- --GC-(GAA- ---A)G-CG- CUAA-GUACU G|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-A ---CGGA--- UUA----GCU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUG--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCUUA AA-------- CGAG-C--GA AACCC-CU-G |-UC--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GAC-GA-G A-CC-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCG-G-CG -UA--CAAAG GGA-G-G-C- C--AGC-C(G 2881 -CAA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAG -CG-C-CGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCUAU)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GG-GGG- GG-GC-AUCC -CAA-G-UCG 3121 C-CGA-G-CG -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGACG-C-A G-GC-GC-CU A-AGAU-GAA CUC-CC-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS269 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 269. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 269. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81953|g1181249 isolate_name= Schlesner 269 BASE COUNT 367 a 354 c 485 g 273 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-G UAGG---AAU -AC-CUCGG- -AA--CAU-A C-CCUC---A -GGUC-G-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAGG-- AGU---G-|G CCGAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- AGA------- -----UG-UC 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CCC-C|A-CC -ACUGG-G-A 841 (CUGA-GA-A ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GUCAAU-- GG-GG-(GAA A)-CCC-UGA ACGA|-GCGA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CCAC| UGUC-AG-GG 1021 --GG-GAU-- GA-AA---CC ---------( -----GCAA- ---------) --------GG 1081 ---------- ---------U U-GA-CAGA- G-CC--C-CA G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 AAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UACA-GGGU- GCG-UAG-GU -G|-GC-CG- 1261 G-AC-AAG|U CAG---GUGU G-AAA-UC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAC- 1321 -UGCG-CUUG A-AAC-UGUU U-GGCUA-GA GUG-----AG C-UA-GGGGU ACU-U|GGAA 1381 CU-GCCAGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAU-A UU-GGCAGG- AACA-CCGG- 1441 -A-G-CC(-G AA-A)GGGA- -AGUACUG-- ---------- ---------- ---------G 1501 GGC--UU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-U-AUGA G--AA-CU-- -------G|G -GC-GG-GGG -AG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -AUCCC-GGC 1741 CG--UA---- --GC-(GAA- ---A)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UAG-AC-UUG ACA-UG|--- -------C-A ---UGGA--- UUA----ACU 1981 -CCG-U--(- GAAA-)-GCG -G-AGCC--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCUUU AA-------- CGAG-C--GA AACCC-CU-G |-UC--GCC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGC-GA-G A-CC-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UU -UA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCC-G-CG -UA--CAAAG GGA-C-G-C- CA-AGC-U(G 2881 -CGA)AGCG- ---------- GA-GCAAA-U CCCAA-AAAG -CG-C-GGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-AUCC -CAA-G-UCG 3121 U-CGC-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-GC-GC-CU A-AGAU-GAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pln.spS658 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planctomyces sp. str. Schlesner 658. ACCESSION No information KEYWORDS No information. SOURCE Planctomyces sp. str. Schlesner 658. ORGANISM Planctomyces sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81954|g908876 isolate_name= Schlesner 658 BASE COUNT 360 a 357 c 496 g 277 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAAC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GGGAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-CCAA- 361 -A-CG-GG-G UAGU---AAU -GU-GUCGG- -AA--CGU-G C-CCUC---U -GGAC-G-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-CG 481 AU-GAA---- ---------- ---------- ---------- ---CUC-(-- -------GGA 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCG---- 661 ----GAGG-- AGC---G-|G CCGAC----- -AU|----GG U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UG- UGA------- -----UG-CC 781 U-AG-G-GG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CCC-C|A-CC -AUUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GUCAAU-- GG-GC-(GAA A)-GCC-UGA ACGA|-GCGA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCAC| UGUC-GA-GG 1021 --GG-GAU-- GA-AGA--GC --GUG-GA-( -----GUUAU C--------) -UCC-GC-GU 1081 ---------- ------CU-U U-GA-CAGA- G-CC--C-AG A-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAC |-UGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UACA-GGGU- GCG-UAG-GC -G|-GC-CA- 1261 G-AC-AAG|U CAG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UGUU U-GGCUC-GA GUC-----AG C-UA-GAGGU ACA-C|GGAA 1381 CU-UCCAGU- GGA-GCG(-G UGAAA)-UGU -GU-UGAU-A UU-GGAAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-A)GCGG- -UGUACUG-- ---------- ---------- ---------G 1501 AGC--UG-GU CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -AC-GG-UAG -GA-GG---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------CCU -UCUAC-GGU 1741 CG--GA---- --GC-(GAA- ---A)G-CG- GGAA-GCACU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|--- -------C-A ---UGGA--- UUA-----CU 1981 -CUC-U--(- GAAA-)-GGA -G-AGCC--- AC-------- --GCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----GG---| AAC-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCUUC AA-------- CGAG-C--GA AACCC-UU-G |-UC--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGCC-G-CG -UA--CAAAG GGA-C-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAC-U CCCAG-AAAG -CG-C-GGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GC-GGG- GG-GC-AUCC -CAA-G-UCG 3121 C-UGU-G-CA -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-C-A G-GC-GC-CU A-AGAU-GAA CUC-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGC--UG GA........ 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1085 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1085. str. SBR1085. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1085. str. SBR1085. ORGANISM str. SBR1085. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84515|g871636 isolate_name= SBR1085 BASE COUNT 88 a 89 c 135 g 63 t 4001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-CU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GGGAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCAA- 361 -A-CG-GG-G UAGU---AAU -GU-GUCGG- -AA--CGU-G C-CCUC---U -GGAC-G-GG 421 -GAU-AG-CG G--------- ------CG-- G(-GAAA-)C -UGCC-G--G UAAUACC-CG 481 AU-GAA---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CCG---- 661 ----GAGG-- AGC---G-|G CCGAC----- -AU|----GG U--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UG- UGA------- -----UG-CC 781 U-AG-G-GG| -A-UGU--(G -AGA)-GCAU ----GA-U-- CCC-C|A-CC -AUUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GUCAAU-- GG-GC-(GAA A)-GCC-UGA ACGA|-GCGA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.3 ISOSPHAERA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.3 ISOSPHAERA_GROUP. ORGANISM 2.10.1.3 ISOSPHAERA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.3.1 ISO.PALLIDA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.3.1 ISO.PALLIDA_SUBGROUP. ORGANISM 2.10.1.3.1 ISO.PALLIDA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iso.palli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Isosphaera pallida str. IS 1B ATCC 43644 [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Isosphaera pallida str. IS 1B ATCC 43644 [gene=rrnA gene]. ORGANISM Isosphaera pallida. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal uncultured inhabitants of a well-studied thermal community JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43644 [gene=rrnA gene] Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66788 (bases 1 to 217) operon= rrnA gene geog_source= Kah-nee-tah Hot Springs, Oregon, USA isolate_name= IS 1B BASE COUNT 127 a 146 c 211 g 91 t 3801 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ CGA------- -----UG-CC 781 W-AC-C-GG| -G-HGU--(G -CGA)-GCGU ----GG-C-- CCG-G|H-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCH -NGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-NAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UNA CCGA|-GCGA CGCN-GCAAU 961 G-G-AG-G-A A-GAM--G-G CH(--HU-UG --)GG-UUGU AAA--CUCC| UGNC-AA-GG 1021 --GG-AAG-- GA-A-GG-GU --CGG-C--( -----GAAGA ---------) --GC-C.... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ......GGU- GGA-GCG(-G UNAUA)-UGC -GU-UGAG-A UC-GGAAGG- AANG-CCHG- 1441 -U-G-GC(-G AA-A)GCGG- -AGUCCUN-- ---------- ---------- ---------G 1501 ACG--CN-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- MA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG G--NN-CU-- -------U|G -GM-AG-UGG -GU-UC---- ---------- 1681 -(GUC-GA)U ---------- ---------- ---------- -------GGG -UCCAC-UGC 1741 N---GA---- --GG-(GAA- ---A)C-CG- UGAA-GUG.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... .A)-GCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C HUUAU-G-CC -HW--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-G-GG -GA--CAAAG CGU-C-G-C- CA-CGC-C(G 2881 -UAA)GGCC- ---------- GA-GCHAA-C CGCGU-AAAC -CC-C-GCC- CCAGUUCGGA 2941 U-CGAGGGC- (UGCAAC-C- C)-GCCCUCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCNUU)-G CCG-CGGUG- AAUGU-GUU- CCU-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iso.pallid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Isosphaera pallida str. IS 1B ATCC 43644. ACCESSION No information KEYWORDS No information. SOURCE Isosphaera pallida str. IS 1B ATCC 43644. ORGANISM Isosphaera pallida. REFERENCE 1 AUTHORS Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. and Stackebrandt,E. TITLE The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees -- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43644 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64372 legacy_attribute= S. Giovannoni seq geog_source= Kah-nee-tah Hot Springs, Oregon, USA isolate_name= IS 1B BASE COUNT 320 a 379 c 503 g 236 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNUCCGA AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G---G----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-AG-GG-U GAGU---AAG -GC-GACGG- CAA--CCU-A C-CCCG---A -GGUU-G-GG 421 -CAU-AG-CC G--------- ------GG-- G(-GAAA-)C -UCCG-G--G UAAUUCC-CA 481 GC-GAU---- ---------- -------G-U CG-G--U-CU ---CAG-(-- --------GC 541 AU-------- -)-CUG---A GA-CA----C G---CAAA-- ---GG----- ---------- 601 --(------- --UGCAAUU- ---)------ ---------| -----C--C- G--CCU---- 661 ----CGGG-- ACG---G-|G CCGUN----- -GU|----GG U--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-CAC-GG) -C-CCACN-A A|-GCC-GA- CGA------- -----UG-CC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-NAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCGA CGCG-CN-GU 961 G-G-AG-G-A A-GAC--G-G CC(--CU-UG --)GG-UUGU AAA--CUCC| UGNC-NN-GG 1021 --GG-AAG-- GA-A-GG-GU --CGG-C--( -----GAAGA ---------) --GC-CN-AU 1081 ---------- -------C-U U-GA-CCGC- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 AAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GA-AG- 1261 G-GC-GCG|U CGG---CGUU G-AAA-UN-C CC-CGG-C(- UC-A)A-CCG -GG-N-NAG- 1321 -CGGC-GUCG A-AAC-GGCC C-UUCUG-GA GGG-----GC G-UA-GAGGG ACU-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAUA)-UGC -GU-UGAG-A UC-GGAAGG- AANG-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -AGUCCUG-- ---------- ---------- ---------G 1501 ACG--CU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-R-AUGG G--CA-CU-- -------U|G -GC-AG-UGG -GU-UC---- ---------- 1681 -(GUC-GA)- ---------- ---------- ---------- -------GGG -UCCAC-UGC 1741 CG--GA---- --GG-(GAA- ---A)C-CG- UGAA-GUGCC N|N|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AANNUA-C G)--CGAAAA 1921 A-CCUUAUCC AGG-GC-UUG ACA-UG|--- -------C-A ---GGGA--- UUA----GCC 1981 -GGC-G--(- GAAA-)-CGU -C-GGUG--- AC-------- --GCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGU------- ----GG---| AAC-CU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCUU AA-------- CGAG-C--GA AACCC-CU-G |-CG--GCN- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ---A(---UC ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-CA-G A-CC-G-CCG --GC(-GU-G AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -NA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-G-GG -GA--CAAAG CGU-C-G-C- CA-CGC-C(G 2881 -UAA)GGCC- ---------- GA-GCCAA-C CGCGU-AAAC -CC-C-GCC- CCAGUUCGGA 2941 U-CGAGGGC- (UGCAAC-C- C)-GCCCUCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-CCAA A--GG-GGG- GG-GC-ACCC -GAA-G-UCG 3121 A-A------- -GA-UC---- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAC-----G G-GC-GC-CG A-AGGU-GAA ACU-CC-NN- AUG-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC25 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64384 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA geog_source= Mount Coot-tha region (Brisbane, Australia), 5-10cm depth biol_source= soil NB: IDENT: related Iso.pallid BASE COUNT 225 a 256 c 371 g 172 t 3352 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GUAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-GACGG- UAA--CCA-A C-CCCA---U -GACU-G-GG 421 -UAU-AG-CC G--------- ------CG-- G(-GAAA-)C -UGCG-G--G UAAUCCC-CA 481 GC-GAU---- ---------- -------G-U CC-G--U-GG ---GAG-(-- --------GC 541 AU-------- -)-CUC---C CG-UG----G AC--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--UCG---- 661 ----UGGG-- ACG---G-|G CCGUC----- -GU|----GG U--AUUA-G- GUG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UG- UGA------- -----UG-CC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)--CG-UGA CCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-GA-GG 1021 --GG-AAA-- GA-AGGG-GG --C------( -----GCAA- ---------) ------N-NU 1081 ---------- ---------U U-GA-CUGA- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GCGC- GUG-UAG-GC -G|-GG-AC- 1261 G-GC-ACG|U CGG--UCGUU G-AAA-UC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAG- 1321 -GGGC-GCCG A-UAC-GACC G-UCCUG-GA GGA-----AC G-UA-GGGGG AGC-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAG-A UC-GGAAGG- AACG-CCCG- 1441 -U-G-GC(-G AA-A)GCGA- -GGUCCUG-- ---------- ---------- ---------G 1501 ACG--UU-UU CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------G|G -GU-AG-GGG -GC-UC---- ---------- 1681 -(GCC-GA)U ---------- ---------- ---------- -------GGG -CUCCC-UGC 1741 CG--UA---- --GG-(GAA- ---A)C-CG- UGAA-GUGCC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CNGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGCAAA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|--- -------C-A ---CGGA--- UUA----GCC 1981 -GGC-G--(- GAAA-)-CGU -C-GGUA--- AG-------- --GCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGU------- ----AC---| AAC-G..... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-GCA-CA-C GUG--CUACA AUGGC..... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1038 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1038. str. SBR1038. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1038. str. SBR1038. ORGANISM str. SBR1038. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84481|g871602 isolate_name= SBR1038 BASE COUNT 77 a 107 c 139 g 58 t 3995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GUAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-GACGG- UAA--CCA-A C-CCCG---U -GAAU-G-GG 421 -UAU-AG-CC G--------- ------CG-- G(-GAAA-)C -UGCG-G--G UAAUCCC-CA 481 GC-GAC---- ---------- -------G-U CC-G--A-GG ---GGG-(-- --------GC 541 AU-------- -)-CUC---C CC-UG----G AC--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--UCG---- 661 ----CGGG-- ACG---G-|G CCGUC----- -GU|----GC U--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GN-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA NCCA|-GCGA CGCC-GC-GU 961 U-G-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iso.spS640 4376 bp RNA RNA 02-JUL-1998 DEFINITION Isosphaera sp. str. Schlesner 640. ACCESSION No information KEYWORDS No information. SOURCE Isosphaera sp. str. Schlesner 640. ORGANISM Isosphaera sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81959|g908858 isolate_name= Schlesner 640 BASE COUNT 326 a 400 c 517 g 246 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGC- 361 -A-AG-GG-U GAGU---AAG -GC-GACGG- CAAG-CCA-A C-CCCG---C -GAUU-G-GG 421 -CAU-AG-CU G--------- ------CG-- G(-GAAA-)C -CGCA-G--G UAAUACC-CA 481 GC-GAC---- ---------- -------G-C GACG--A-CG ---UCG-(-- --------GC 541 AU-------- -)-CGA---C GU-UU----C GC--CAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--UCG---- 661 ----CGGG-- ACG---G-|G CUGUC----- -GU|----GG U--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AGC-GG) -C-CCACC-A A|-GCC-GG- CGA------- -----UG-CC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-A CC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-GA-GG 1021 --GG-GAU-- AA-A-GG-CC --C------( -----GCAA- ---------) ------G-GU 1081 ---------- -------C-U U-GA-UUGA- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GCGC- GUG-UAG-GN -G|-GG-UU- 1261 A-GC-GCG|U CCG--UCCCU G-AAA-UC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAC- 1321 -UGGC-GGGG A-UAC-GGCU G-GCCUG-GA GGG-----GC G-UA-GGGGG ACC-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAG-A UC-GGAAGG- AACG-CCCG- 1441 -U-G-UC(-G AA-A)GCGA- -GGUCCUG-- ---------- ---------- ---------G 1501 ACG--CC-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------G|G -GU-AG-GGG -GC-UC---- ---------- 1681 -(GCC-GA)U ---------- ---------- ---------- -------GGG -CUCCC-UGC 1741 CG--UA---- --GG-(GAA- ---A)C-CG- UGAA-GUGCC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGCAAA 1921 A-CCUUAUCC CAG-GC-UUG ACA-UG|--- -------C-A ---CGGA--- UUA----ACC 1981 -GGC-G--(- GAAA-)-CGU -C-GGCC--- AG-------- --GCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGU------- ----AC---| AAC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCCU AA-------- CGAG-C--GA AACCC-CU-G |-UG--UCU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGA-CA-G A-CC-G-CCG --GC(-GU-U AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CU -UG--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGGG-G-GG -GA--CAGAG CGU-C-G-C- UA-GGC-G(G 2881 -CAA)CGCC- ---------- GU-GCUAA-U CGCAA-AAAC -CG-U-UCC- UCAGUUCGGA 2941 U-UGCGGGC- (UGCAAC-C- C)-GCCCGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAU-)-G CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCAA A--GC-GGG- GG-GC-AUCC -GAA-G-UCG 3121 C-CGG---AG ----CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-C----A G-GC-GC-CG A-AGAU-GAA ACC-CG-UG- AUG-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iso.spS666 4376 bp RNA RNA 02-JUL-1998 DEFINITION Isosphaera sp. str. Schlesner 666. ACCESSION No information KEYWORDS No information. SOURCE Isosphaera sp. str. Schlesner 666. ORGANISM Isosphaera sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81958|g908860 isolate_name= Schlesner 666 BASE COUNT 328 a 395 c 527 g 244 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-NAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGCG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CNCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGG- 361 -A-AG-GG-U GAGU---AAG -GC-GACGG- CAA--CCA-A C-CCCG---A -GGAU-G-GG 421 -UAU-AG-CC G--------- ------CG-- G(-GAAA-)C -UGCG-G--G UAAUCCC-CA 481 GC-GAU---- ---------- -------G-C GAGG--G-CG ---UCG-(-- --------GC 541 AU-------- -)-CGA---C GC-UU----C GC--CAAAU- ---GGA---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----UC--C- G--CCU---- 661 ----CGGG-- ACG---G-|G CCGUC----- -GU|----GG U--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AGC-GG) -C-CCACC-A A|-GCC-UU- CGA------- -----UG-CC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-GA-GG 1021 --GG-GAG-- AA-A-GG-UC --C------( -----GCAA- ---------) ------G-GG 1081 ---------- -------C-U U-GA-UCGA- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GCGC- GUG-UAG-GC -G|-GA-UC- 1261 G-GU-GCG|U CGG--CGCCU G-AAA-UC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAC- 1321 -GCGG-CCCG A-AAC-GACC G-GUCUG-GA GGG-----AC G-UA-GGGGG GUC-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAG-A UC-GGAAGG- AACG-CCCG- 1441 -U-G-GC(-G AA-A)GCGA- -GACCCUG-- ---------- ---------- ---------G 1501 ACG--UC-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AAUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -GU-AG-GGG -GC-UC---- ---------- 1681 -(GCC-GA)U ---------- ---------- ---------- -------GGG -CUCCC-UGC 1741 CG--CA---- --GG-(GAA- ---A)C-CG- UGAA-GUGCU C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|--- -------C-A ---GGGA--- UUA----GCC 1981 -GGC-G--(- GAAA-)-CGU -C-GGUG--- AC-------- --GCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGU------- ----GG---| AAC-CU-GUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GA AACCC-CU-G |-UG--AUC- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-GAU-CA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGG-U-GG -GA--CAGAG CGU-C-G-C- AG-GG--C(G 2881 -CAA)GGCC- ---------- GC-GCCAA-U CGCAA-AAAC -CA-U-CCC- UCAGUUCGGA 2941 U-UGCGGGC- (UGCAAC-U- C)-GCCCGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCAA A--GC-GGG- GG-GC-AUCC -GAA-G-UCG 3121 U-CGG---AG ----CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-C----A G-GC-GC-CG A-AGAU-GAA ACC-CG-UG- AUG-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGC--UG GAUCA..... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iso.spS657 4376 bp RNA RNA 02-JUL-1998 DEFINITION Isosphaera sp. str. Schlesner 657. ACCESSION No information KEYWORDS No information. SOURCE Isosphaera sp. str. Schlesner 657. ORGANISM Isosphaera sp. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81960|g908859 isolate_name= Schlesner 657 BASE COUNT 339 a 395 c 511 g 262 t 2869 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAU -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGC- 361 -A-AG-GG-U GAG----AAU -GC-GACGG- UAA--CCC-A A-CCCC---G GAAUU-G-GG 421 -CAU-AG-CC G--------- ------CG-- G(-GAAA-)C -UGCG-G--G UAAUACC-CA 481 AC-GAU---- ---------- -------G-U CA-C--G-CG ---AGG-(-- --------AC 541 AU-------- -)-CCU---C GU-GU----G AC--CAAA-- ---GG----- ---------- 601 --(------- --UGUGAUU- ---)------ ---------| -----C--C- G--CUC---- 661 ----UGGG-- ACG---G-|G CCGUC----- -GU|----GG U--AUUA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UG-CC 781 U-AC-C-GG| -G-CGU--(G -CGA)-GCGU ----GG-C-- CCG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCU -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-GA-GG 1021 --GG-GAG-- GA-A-GG-UG --UGA-U--( -----GCAGA ---------) --AU-CA-CG 1081 ---------- -------C-U U-GA-CCGA- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUAU UC-GGAAUCA -CU-GGGC|U UAAA-GAGC- GCG-UAG-GC -G|-GA-UU- 1261 G-CU-ACG|U CGG--UUGCU G-AAA-UC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAG- 1321 -UGUC-AGCG A-UAC-GGGC A-GUCUC-GA GGG-----AC G-UA-GGGGG ACC-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAG-A UC-GGAAGG- AACG-CCCG- 1441 -U-G-GC(-G AA-A)GCGA- -GGUCCUG-- ---------- ---------- ---------G 1501 ACG--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------G|G -GU-AG-GGG -GC-UC---- ---------- 1681 -(GCC-GA)U ---------- ---------- ---------- -------GGG -CUCCC-UGC 1741 CG--CA---- --GG-(GAA- ---A)C-CG- UGAA-GUGUC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGCAAA 1921 A-CCUUAUCC UAG-GC-UUG ACA-UG|--- -------C-A ---CGGA--- UUA----GCC 1981 -AGC-G--(- GAAA-)-CGU -U-GGUG--- AG-------- --GCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGU------- ----AC---| AAC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCCU AA-------- CGAG-C--GA AACCC-CU-G |-UG--UCC- 2281 AG--UUGC-C AA-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-GGA-CA-G A-CC-G-CCG --GC(-GU-U AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-GCA-CA-C GUA--CUACA AUGGG-U-CG -GA--CAGAG CGA-C-G-C- CA--CU-C(G 2881 -CAA)GAGU- ---------- GC-GCCAA-U CGCAA-AAAC -CG-C-CCC- CCAGUUCGGA 2941 U-UGCGGGC- (UGCAAC-C- C)-GCCCGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAU-)-G CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CCAA A--GC-GGG- GG-GC-AUCC -GAA-G-UCG 3121 C-CGG---AG ----CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-C----A G-GC-GC-CG A-AGGU-GAA ACC-CG-UG- AUG-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I. ORGANISM 2.10.1.3.2 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64379 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: Gmt.obscur relatives group BASE COUNT 273 a 296 c 424 g 228 t 3155 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AUCCCGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCGGG GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-G CAGU---AAG -GC-GUGGC- UAA--CCU-A C-CCCG---G -GGAC-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-UAAC-)G -GAGG-G--G UAAUACC-CG 481 GC-GAU---- ---------- -------G-U GG-C--G-AG ---GGG-(-- --------GC 541 AU-------- -)-CUC---C UU-GU----C AU--GAAAC- ---GA----- ---------- 601 --(------- ----GUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----CGGG-- AGG---G-|G GUCAC----- -GU|----GC U--AUUA-C- CUG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGG-GA- AGA------- -----UG-GC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GC-(GCA A)--CG-UGA CCGA|-GCGA CGCC-GC-GU 961 G-U-GC-N-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UGUC-GA-GG 1021 --GN-NGA-- NG-AUGC-CC ---------( -----GCAA- ---------) --------GG 1081 ---------- -------U-U U-GA-CCUA- U-UCC-U--N G-GG--UNAG ---------C 1141 -ACNGGUU-A AGUUC-GUN( CCA--ANAGC C-UGGUA-A) G-A-C-GNAC |-CUUG-C-- 1201 GAA-CGUUGU UC-GGAUUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 G-CC-AGG|U CAG---GGGU G-AAA-UC-U UU-CGG-C(- UC-A)A-CCG -GA-A-AAG- 1321 -CGCU-UCUG A-UAC-CGGC G-GGCUG-GA GGA-----GG G-UA-GGGGC GGA-U|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACG-CCGA- 1441 -U-G-GC(-G AA-A)GCGA- -UCCGCUG-- ---------- ---------- ---------G 1501 ACC--CU-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-CU--A 1621 AAC-G-AUGG G--NA-CU-- -------A|G -GU-AG-UGG -AC-UU---- ---------- 1681 -(GAC-AU)- ---------- ---------- ---------- -------GGG -UUCAC-UGC 1741 CG--AA---- --GC-(AAA- ---A)G-UG- UUAA-GUCCC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|UGC GAAAGCGG-U ---GGGGA-- GUA----GGG 1981 -UGC-G--(- GAAA-)-CGU -U-ACC---- CC-------- ---------- --(---AACG 2041 GUACCCAGUC C--------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ----GG--A| ACC-CA-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UCC- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AU........ .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC98 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64376 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: Gmt.obscur relatives group BASE COUNT 283 a 301 c 428 g 231 t 3133 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---AAUCCCA GGGGCUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAAUC UCUGGGGGA- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-G CAGU---AAU -GC-GUGGG- UAA--CCU-A C-CCCG---G -GGAC-C-GG 421 -GAU-AG-CC A--------- ------CC-- C(-UAAC-)G -GGUG-G--G UAAUACC-GG 481 GC-GAU---- ---------- -------G-U AG-C--G-AG ---AUC-(-- --------AC 541 CU-------- -)-GAC---C UU-GC----U AU--GNNAC- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----CGGG-- AGG---G-|G CUCAC----- -GU|----GG U--AUUA-C- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGG-AA- AGA------- -----UG-GC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UGUC-GA-GG 1021 --GG-GAG-- GA-A-AG-CC ---------( -----GCAAU ---------) --------GG 1081 ---------- ---------U C-UG-ACCU- A-UCC-C-UG G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUGU UC-GGAUUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 G-CC-AAG|U CAG---GGGU G-AAA-UC-U CU-CGG-C(- UC-A)A-CCG -GG-A-AAG- 1321 -UGCU-UCUG A-UAC-UGGC G-GGCUG-GA GGG-----AG G-UA-GGGGC AGA-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -UCUGCUG-- ---------- ---------- ---------G 1501 ACC--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-CU--A 1621 AAC-G-AUGG G--GA-CU-- -------A|G -GU-AG-UGG -AC-UU---- ---------- 1681 -(GAC-AU)- ---------- ---------- ---------- -------GGG -UUCAC-UGC 1741 CG--AA---- --GC-(CAA- ---A)G-UG- UUAA-GUCCC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC CAG-GC-UUG ACA-UG|UGC GAAAGCGG-U ---AGCAA-- GUA----GGG 1981 -UGC-G--(- GAAA-)-CGU -U-CCC---- CC-------- ---------- --(---AACG 2041 GUAUCCAGUC C--------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ----GG--A| AGC-UA-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UCC- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -UN--GGGC- 2821 U-GCA-CA-C GUG--CUACA AU........ .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC55 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64377 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: Gmt.obscur relatives group BASE COUNT 281 a 298 c 431 g 221 t 3145 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------AAU CCCAGGG-GG (--GC----- ---------- ---------- 241 --------AA -)CU-CUCUG GGGGA----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-G CAGU---AAG -GC-GUGGG- UAA--CUU-G C-CCCG---G -GGCC-U-GG 421 -AAU-AG-CC G--------- ------UC-- C(-UAAC-)G -GACG-G--G UAAUACC-AG 481 AU-GUC---- ---------- -------G-U AG-C--G-UG ---GAG-(-- --------GC 541 AU-------- -)-CUU---C GU-GC----U AC--GAAA-- ---GC----- ---------- 601 --(------- ---UCAG--- ---)------ ---------| -----G--C- A--CCC---- 661 ----CGGG-- AGA---G-|G CUCAC----- -GU|----GG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG... 781 ........G| -G-UGU--(G -AGA)-GCAC ----GA-C-- CUG-C|G-CC -ACUGG-C-A 841 (CUGU-GA-C ACU)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UGUC-GG-GG 1021 --GG-AAG-- AA-AGAC-CC ---------( -----GCAA- ---------) --------GG 1081 ---------- -------G-U U-UG-AUCG- A-CCU-C-CG G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUGU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GG-CU- 1261 C-GC-CAG|U CAG---GGGU G-AAA-GC-C UC-CAG-C(- UC-A)A-CUG -GA-G-AAG- 1321 -UGCC-UUUG A-UAC-UGCG A-GCCUC-GA GGG-----AG G-UA-GGGGC GUG-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CGCGCUG-- ---------- ---------- ---------G 1501 ACC--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-AG-UGG -AC-U----- ---------- 1681 -(GAC-AU)G ---------- ---------- ---------- --------GG -UUCAC-UGC 1741 CG--AA---- --GC-(AAA- ---A)G-UG- UUAA-GUACC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|UGC GAAAGCGG-C ---AGGGA-- AUA----GCC 1981 -CGC-G--(- GAAA-)-CGU -G-GGG---- CC-------- ---------- --(---AACG 2041 GUAUCCAGUC C--------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ----GG--A| GCC-UG-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-CU-G |-UC--UCC- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AU........ .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC113 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64375 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: Gmt.obscur relatives group BASE COUNT 256 a 312 c 440 g 196 t 3172 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------AAU CCCGCGG-GG (--GC----- ---------- ---------- 241 --------AA -)CU-CCGCG GGGGA----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-G CAGU---AAG -GC-GUGGG- CAA--CCC-A C-CCCG---G -GGAC-G-GG 421 -CAU-AG-CC G--------- ------UC-- C(-UAAC-)G -GACG-G--G UAAUUCC-CG 481 GC-GAU---- ---------- -------C-C GG-C--G-AG ---GGG-(-- --------GC 541 AU-------- -)-CCC---C UC-GG----C GG--GAAAC- ---GA----- ---------- 601 --(------- ----GUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----CGGG-- AGG---G-|G CUCAC----- -GU|----GC U--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-GAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG-GC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGC-GA-C ACU)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GC-(GCA A)--CG-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCGC| UGUC-GA-GG 1021 --GG-GAG-- GA-A-GC-CC ---------( -----GCGA- ---------) --------GG 1081 ---------- ---------U U-GA-CCGA- C-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUGU UC-GGAUUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GG-UC- 1261 G-CC-CAG|U CGG---GGGU G-AAA-UC-U UU-CGG-C(- CC-A)A-CCG -GA-A-AAC- 1321 -GGCC-UCCG A-UAC-UGGC G-ACCUC-GA GGG-----GG G-UA-GGGGC AUG-C|GGAA 1381 CU-UCGGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGAAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CGUGCUG-- ---------- ---------- ---------G 1501 ACC--CC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-CU--A 1621 AAC-G-AUGG G--CA-CU-- -------G|G -GU-UG-UGG -AC-UG---- ---------- 1681 -(GAC-AU)- ---------- ---------- ---------- -------GGG -UUCAC-AGC 1741 CG--CA---- --GC-(CAA- ---A)G-UG- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC CGG-GC-UUG ACA-UG|UCC GAAAGGGG-G ---AGGAA-- GUA----CCC 1981 -UGC-G--(- GAAA-)-CGU -A-AGG---- GG-------- ---------- --(---AACG 2041 GUACCCAGCC C--------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ----GG--A| CCC-UC-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GA AACCC-UU-G |-UU--UCC- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-GGA-AA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64378 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT: Gmt.obscur relatives group BASE COUNT 256 a 306 c 449 g 200 t 3165 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----AAUCCC ACCGCCG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGGGG GUGGGGGA-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-AG-GG-G CAGU---AAG -GC-GUGGG- UAA--CCU-A C-CCCG---G -GGAC-C-GG 421 -GAU-AG-CC U--------- ------CC-- C(-UAAC-)G -GGAG-G--G UAAUACC-GG 481 GC-GAU---- ---------- -------C-U GG-C--C-UC ---AGG-(-- --------GC 541 AU-------- -)-CCU---G GG-GC----C AG--GAGAG- ---GA----- ---------- 601 --(------- ----GUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----CGGG-- AGG---G-|G CUCAC----- -GU|----GG U--AUUA-G- CUA-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G U|-GGC-CG- AGA------- -----UG-CC 781 U-AG-C-GG| -G-UGU--(G -CGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGC-GA-C ACU)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GC-(GCA A)--CG-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCGC| UGUC-GA-GG 1021 --GG-GAG-- GA-A-CG-CC ---------( -----GCAA- ---------) --------GG 1081 ---------- -------C-U U-GA-CCUA- U-CCC-U--G G-AG--GAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUGU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GG-CC- 1261 C-CC-UUG|U CCG---GGGU G-AAA-GC-U UU-CGG-C(- UU-A)A-CCG -GA-A-AAG- 1321 -GGCC-UCGG A-AAC-GGGG G-GCCUG-GA GGG-----AG G-UA-GGGGC GGC-C|GGAA 1381 CU-UCCGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-GGAAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -GCCGCUG-- ---------- ---------- ---------G 1501 ACC--UC-UG CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------G|G -GU-AG-GGG -AC-UG---- ---------- 1681 -(GAC-AU)- ---------- ---------- ---------- -------GGG -UUCCC-UGC 1741 CG--CA---- --GC-(GAA- ---A)G-UG- GUAA-GUACC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-GC-UUG ACA-UG|UGC GAAAGCGC-A ---GGGCA-- GUA----GGG 1981 -CGC-G--(- GAAA-)-CGU -G-UCC---- CC-------- ---------- --(---AACG 2041 GUACCCAGUC C--------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ----GG--A| ACC-CU-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GGG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GA AACCC-UU-G |-UC--UCC- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.3.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.3.3 GEM.OBSCURIGLOBUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.3.3 GEM.OBSCURIGLOBUS_SUBGROUP. ORGANISM 2.10.1.3.3 GEM.OBSCURIGLOBUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gmt.obscu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemmata obscuriglobus str. UQM 2246. ACCESSION No information KEYWORDS No information. SOURCE Gemmata obscuriglobus str. UQM 2246. ORGANISM Gemmata obscuriglobus. REFERENCE 1 AUTHORS Moyer,C.L. and Giovannoni,S.J. TITLE Nucleotide sequence of the cytoplasmic 16S rRNA gene from Gemmata obscuriglobus JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54522 isolate_name= UQM 2246 NB: Bad insertion (duplication of read of 5 bases at 741r) BASE COUNT 366 a 358 c 483 g 275 t 2894 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GGGG 121 ---------- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ -CCG-GCGU- 361 -A-AG-GG-G CAGU---AAG -GC-AUGGG- U-A--CCU-A C-CCGG---G -GGUU-C-GG 421 -GAU-AG-CC A--------- ------UC-- A(-GAGA-)U -GGUG-G--G UAAUACC-GG 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----C--G- G--CCC---- 661 ----CCGG-- AGG---G-|G CCCAU----- -GU|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUCG-C-A 841 (CUGA-GA-C ACU)--GGCG -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCGA UGCC-GC-GU 961 G-C-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCGC| UUUA-GU-GG 1021 --GG-GAG-- AG-AAAA-GC --C------( -----GAGA- ---------) ------G-GU 1081 ---------- ---------G U-GA-UCUA- U-CC--C-WA A-AA--UAAG ---------C 1141 -UCGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGAG-C-- 1201 GAA-CGUUGU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GG-CU- 1261 A-UC-MAG|U CUG---GGGU G-AAA-UG-C CG-CGG-C(- UC-A)A-CCG -CG-G-AAC- 1321 -GGCC-UCAG A-UAC-UGAC G-GCCUG-GA GGG-----AG G-UA-GGGGC AUG-U|GGAA 1381 CU-GUAGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-UACAGG- AACU-CYGG- 1441 -U-G-GC(-G AA-A)S-GA- -CGUGCUG-- ---------- ---------- ----UGCUGG 1501 ACC--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -AU-AG-UAG -AC-C----- ---------- 1681 -(AGA-UA)U ---------- ---------- ---------- -------GGG -UUUAC-UGU 1741 CG--AA---- --GU-(UAA- ---A)A-UG- CUAA-GUACC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CKAAGA 1921 A-CCUUAUCC UGG-AC-UUG ACA-UG|UGC GAAAGNCU-U ---C-KGCA- GUA----GGA 1981 -CCC-G--(- GAAA-)-CGG -A-ACGG--- CC-------- -CCCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGGG------ ----GG--A| CC--GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GU- A)--AUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-G AC-C------ ---------- ---------- ----(---CA ---CAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAAG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-G-UA -CA--CAGAG UGA-A-G-C- GA-CUC-U(G 2881 -CGA)AGAG- ---------- GA-GCCAA-U CACAG-AAAU -UA-C-ACC- CCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGC-CG -GAAY-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAC)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GA-GAG- GG-AC-GUCC -GAA-G-CCA 3121 C-C------- ---------- ---------- ---------- -----(---- UUCACC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GU-GU-CG A-AGM--GGA CUU-CU-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gmt.obscur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemmata obscuriglobus str. UQM 2246 ACM 2224. ACCESSION No information KEYWORDS No information. SOURCE Gemmata obscuriglobus str. UQM 2246 ACM 2224. ORGANISM Gemmata obscuriglobus. REFERENCE 1 AUTHORS Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. and Stackebrandt,E. TITLE The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees -- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information REFERENCE 2 AUTHORS Liesack,W., Haas,H. and Stackebrandt,E. TITLE Nucleotide sequence of 16S rDNA from Gemmata obscuriglobus, a member of the Planctomycetes JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56305 amplification_primer= 5': primer = gagtttgatcctggctcag (pos 25) amplification_primer= 3': primer = (<-1525) ggctggatcacctcctttct (complement) isolate_name= UQM 2246 BASE COUNT 362 a 351 c 478 g 261 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GU-- UGGC-GGC-A -UGG-AU--U AGGC-AUGCA A-GUC-GGGG 121 ---------- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ -CCG-GCGU- 361 -A-AG-GG-G CAGU---AAG -GC-AUGGG- U-A--CCU-A C-CCGG---G -GGUU-C-GG 421 -GAU-AG-CC A--------- ------UC-- A(-GAGA-)U -GGUG-G--G UAAUACC-GG 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----CCGG-- AGG---G-|G CCCAU----- -GU|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUCG-C-A 841 (CUGA-GA-C ACU)--GGCG -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCGA UG-C-GC-GU 961 G-C-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCGC| UUUA-GU-GG 1021 --GG-GAG-- AA-AA---GC --C------( -----GAGA- ---------) ------G-GU 1081 ---------- ---------G U-GA-UCUA- U-CC--C-AA A-AA--UAAG ---------C 1141 -UCGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGAG-C-- 1201 GAA-CGUUGU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-GC -G|-GG-CU- 1261 A-UC-AAG|U CUG---GGGU G-AAA-UG-C CG-CGG-C(- UC-A)A-CCG -CG-G-AAC- 1321 -GGCC-UCAG A-UAC-UGAC G-GCCUG-GA GGG-----AG G-UA-GGGGC AUG-U|GGAA 1381 CU-GUAGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-UACAGG- AACU-CCGG- 1441 -U-G-GC(-G AA-A)GCGA- -CGUGCUG-- ---------- ---------- ---------G 1501 ACC--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -AU-AG-UAG -AC-CC---- ---------- 1681 -(AGA-UA)U ---------- ---------- ---------- -------GGG -UUUAC-UGU 1741 CG--AA---- --GU-(UAA- ---A)A-UG- CUAA-GUACC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-AC-UUG ACA-UG|UGC GAAAGCGC-U ---C-GGCA- GUA----GGA 1981 -CCC-G--(- GAAA-)-CGG -A-ACGG--- A--------- CCCCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGGGG----- ----GG--A| CCG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-G AC-C------ ---------- ---------- ----(---CA ---CAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C UGG--CUACA AUGGU-G-UA -CA--CAGAG UGA-A-G-C- GA-CUC--(G 2881 -CGA)AGAG- ---------- GA-GCCAA-U CACAG-AAAU -UA-C-ACC- CCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAC)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GA-GAG- GG-AC-GUCC -GAA-G-CCA 3121 C-C------- ---------- ---------- ---------- -----(---- UUCACC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GU-GU-CG A-AGAC-GGA CUU-CU-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gmt.obscu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemmata obscuriglobus str. Schlesner 633. ACCESSION No information KEYWORDS No information. SOURCE Gemmata obscuriglobus str. Schlesner 633. ORGANISM Gemmata obscuriglobus. REFERENCE 1 AUTHORS Ward,N., Rainey,F.A., Stackebrandt,E. and Schlesner,H. TITLE Unraveling the extent of diversity within the order Planctomycetales JOURNAL Appl. Environ. Microbiol. 61, 2270-2275 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81957|g914848 isolate_name= Schlesner 633 BASE COUNT 355 a 359 c 482 g 266 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GU-- UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GGGG 121 ---------- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ -CCG-GCGU- 361 -A-AG-GG-G CAGU---AAG -GC-AUGGG- U-A--CCU-A C-CCGG---G -GGUU-C-GG 421 -GAU-AG-CC A--------- ------UC-- A(-GAGA-)U -GGUG-G--G UAAUACC-GG 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----CCGG-- AGG---G-|G CCCAU----- -GU|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUCG-C-A 841 (CUGA-GA-C ACU)--GGCG -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUA-GU-GG 1021 --GG-GAG-- AA-AA---GC --C------( -----GAGA- ---------) ------G-GU 1081 ---------- ---------G U-GA-UCGA- U-CC--C-AA A-AA--UAAG ---------C 1141 -ACGGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GAAC |-CGUG-C-- 1201 GAA-CGUUGU UC-GGAAUCA -CU-GGGC|U UAAA-GGGC- GCG-UAG-CC -G|-GG-CU- 1261 A-UC-AAG|U CUG---GGGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UCAG A-UAC-UGAC G-GCCUC-GA GGG-----AG G-UA-GGGGC AUA-C|GGAA 1381 CU-GUAGGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UC-UACAGG- AACU-CCGG- 1441 -U-G-UC(-G AA-G)GCGG- -CGUGCUG-- ---------- ---------- ---------G 1501 ACC--UC-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -AU-AG-UAG -G--CC---- ---------- 1681 -(AGA-UA)U ---------- ---------- ---------- -------GGG -CUUAC-UGU 1741 CG--AA---- --GU-(UAA- ---A)A-UG- CUAA-GUACC C|C|G-CCU- G-GGGAGUAU 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AGGCUA-C G)--CGAAGA 1921 A-CCUUAUCC UGG-AC-UUG ACA-UG|UGC GAAAGCGC-U ---CGGU-G- GUA----GGA 1981 -GCC-G--(- GAAA-)-CGG -C-GACGA-- AC-------- --CUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAG------- ----GG--A| GCC-GA-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GA AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AC-CC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|A 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-G-UA -CA--CAGAG UGA-A-G-C- GA-CGA-C(G 2881 -CGA)GUCG- ---------- GA-GCCAA-U CACAG-AAAU -UA-C-ACC- CCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAC)-A CCG-CGGUG- AAUGU-GUU- CCU-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGAA A--GG-GAG- GG-AC-GGCC -GAA-G-UCC 3121 G-C------- ---------- ---------- ---------- -----(---- UUCACC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-CG-GC-CG A-CGCC-GGA CUU-UC-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.1.3.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.1.3.4 SBR_ISOLATES_II. ACCESSION No information KEYWORDS No information. SOURCE 2.10.1.3.4 SBR_ISOLATES_II. ORGANISM 2.10.1.3.4 SBR_ISOLATES_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2030 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2030. str. SBR2030. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2030. str. SBR2030. ORGANISM str. SBR2030. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84570|g871691 isolate_name= SBR2030 BASE COUNT 84 a 95 c 131 g 61 t 4005 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GUGG 121 ---------- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-CA (--GC----- ---------- ---------- 241 --------AA -)UG-GGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- ---|------ -CCG-GCGU- 361 -A-AG-GG-G CAGU---AAG -GC-GUAGG- U-A--CCU-A C-CCGG---G -GGUU-G-GG 421 -CAU-AG-CC C--------- ------GU-- A(-GAGA-)U -ACGG-G--G UAAUUCC-CA 481 GC-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--CCC---- 661 ----UCGG-- AGG---G-|G GCUAC----- -GU|----GG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UG-CC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-GAUCUU C-CNCAAU-- GG-GG-(GNA A)-CCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-U-UC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GNAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1068 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1068. str. SBR1068. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1068. str. SBR1068. ORGANISM str. SBR1068. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84501|g871622 isolate_name= SBR1068 BASE COUNT 96 a 88 c 128 g 70 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 ---------- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAACAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UGUGU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCGA---- ---|------ -GCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-CUGGG- A-A--CGU-A C-CCUG---A -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-AAAA-)U -GGCG-A--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 GA-------- -)-AAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCU---- 661 ----UCGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2092 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2092. str. SBR2092. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2092. str. SBR2092. ORGANISM str. SBR2092. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84622|g871743 isolate_name= SBR2092 BASE COUNT 93 a 88 c 130 g 71 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-GU--U AGGC-AUGCA A-GUC-GAGC 121 ---------- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAACNUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UGUGU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCGA---- ---|------ -GCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-CUGGG- A-A--CGU-A C-CCUG---A -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -GGCG-A--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 GA-------- -)-AAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCU---- 661 ----UCGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1073 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1073. str. SBR1073. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1073. str. SBR1073. ORGANISM str. SBR1073. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84505|g871626 isolate_name= SBR1073 BASE COUNT 96 a 89 c 125 g 71 t 3995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUACA A-GUC-GAGC 121 G--------- -----AGGA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AACAUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UGUGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -AUUCG---- ---|------ AGCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-CUGGG- A-A--CGU-A C-CCUG---A -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -GGCG-A--G UAAUACC-CN 481 AU-GAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 GA-------- -)-AAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCU---- 661 ----UCGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UN 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- AGA------- -----UC-UC 781 U-AG-C-GG| -G-UGU--(U -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2077 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2077. str. SBR2077. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2077. str. SBR2077. ORGANISM str. SBR2077. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84608|g871729 isolate_name= SBR2077 BASE COUNT 92 a 91 c 131 g 69 t 3993 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-UU--U AGGC-AUGCA A-GUC-GAGC 121 ---------- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUUCU UAC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCGA---- ---|------ -GCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-CUGGG- A-A--CGU-A C-CCUC---G -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -GGCG-A--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCC---- 661 ----AAGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AU- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1063 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1063. str. SBR1063. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1063. str. SBR1063. ORGANISM str. SBR1063. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84497|g871618 isolate_name= SBR1063 BASE COUNT 93 a 89 c 130 g 70 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 ---------- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUUCU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCGA---- ---|------ -GCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-UUGGG- A-A--CGU-A C-CCUC---G -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -GGCG-A--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCC---- 661 ----AAGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AU- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCA A)-GCU-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1008 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1008. str. SBR1008. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1008. str. SBR1008. ORGANISM str. SBR1008. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84453|g871574 isolate_name= SBR1008 BASE COUNT 92 a 89 c 132 g 69 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGN-GGC-G -UGG-AU--U AGGC-AUGCA A-GUC-GAGC 121 ---------- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUUCU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCGA---- ---|------ -GCG-GCGU- 361 -A-AG-GG-G CAGU---AAU -AC-CUGGG- A-A--CGU-A C-CCUC---G -GGUC-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -GGCG-A--G UAAUACC-CG 481 AU-GAU---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----CAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--C- G--CCC---- 661 ----AAGG-- AGC---G-|G CCCAG----- -GC|----GA U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AU- AGA------- -----UG-UC 781 U-AG-C-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCG-C|G-CC -ACUGG-C-A 841 (CUGA-GA-C ACU)--GGCC -AGA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-GGCAAU-- GA-GC-(GCG A)-GCU-UGA CCGA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.2-CHL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.2 CHLAMYDIA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.10.2 CHLAMYDIA_SUBDIVISION. ORGANISM 2.10.2 CHLAMYDIA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.2.1 ENV.AGG27_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.10.2.1 ENV.AGG27_ASSEMBLAGE. ORGANISM 2.10.2.1 ENV.AGG27_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg27 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10943 library_source= marine snow associated BASE COUNT 329 a 323 c 439 g 274 t 3011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........A- 361 -A-AG-GG-U GAGU---AAC -AC-GUAAC- CAA--CGU-A CCCCUC---A -G-AU-C-GG 421 -AAU-AA-CC U--------- ------CU-- G(-GAAA-)C -GGUG-G--G UAAUGCC-GA 481 AU-GGU---- ---------- -------C-C UG-G--G-A- ---GAG-(-- --------AC 541 AU-------- -)-CUC---U CC-CG----A GG--UAAA-- ---CGGUG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----GG--| --UGCU--G- ---CUG---- 661 ----AGGG-- AGC---G-|G GUUGC----- -GG|----CC U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--CUGC| UGUC-AC-GC 1021 --UA-UAG-- GA-CCCA-CG --GUC-GU-( -----UAAUA ---------) -GCU-UC-CG 1081 ---------- ---------U G-CU-GACC- A-AAG-C-GA G-AG--GAAG ---------C 1141 -GCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGC-C-- 1201 AAG-CGUAGU UC-GGAUUUA -CU-GGGC|A UAAA-GAGC- ACG-UAG-GC -G|-GC-UC- 1261 G-CU-CAG|U CAG---GUGU G-AAA-G--C CA-CGG-C(- CC-A)A-CCG -UG-G-AAC- 1321 -UGCA-CCUG A-UAC-UGGC G-AGCUU-GA GGA-----CG G-AA-GGGGU GAG-U|GGAA 1381 CU-CCAGGU- GGA-ACG(-G UGAAA)-UGU -AU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GU-CU CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GC-AA-UGG -GC-C----- CU-------- 1681 -(CCU-AU)G A--------- ---------- ---------- --------GG -UUCAU-UGC 1741 CG--GA---- --GC-(UAA- ---U)G-UG- UUAA-GUGC- C|C|G-CCU- G-GGGNGUAC 1801 GCU-C---(G CAA)---G-G GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-A-UC--A 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-UGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------U-A ---CGGAU-- -UA----GCU 1981 -CUG-U--(- GAAA-)-G-A -G-AGUGA-- CG-------- -GCUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAGU------ ----UG--G| AAC-GU-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GA AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --UU(-GU-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C UU-AU-G-GC -CU--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGU-C-CG -UA--CAAUG GGU-U-C-C- GA-AGC-N(G 2881 -CGA)GGUG- ---------- UA-GGCAA-U CCCAUCAAAG -CG-G-GCC- CCAGUUCGAA 2941 U-UGCAGGC- (UGAAAU-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGCCAC)-G ACG-CGGUG- AAUAU-GUU- CCU-GAU-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-CGGG A--GC-GGG- UA-GC-GCUC -GAA-G-UCG 3121 U-UUU-GUCU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGAC.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G9 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G9.. ACCESSION No information KEYWORDS No information. SOURCE clone G9. ORGANISM clone G9. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91181|g984104 BASE COUNT 89 a 66 c 117 g 73 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGNG-C-- 1201 GAG-CGUNNA UCGGNAUUUA -UU-GGGC|G UAAA-GCGC- GUG-CAG-GC -U|-GU-UU- 1261 G-GA-AAG|U UGG---AUGU G-AAA-GC-U CC-UGG-C(- UU-A)A-CUG -GG-A-GAG- 1321 -GUCG-UUCA A-AAC-UACC A-AACUA-GA GAA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AU-UU CUGACG-CUU AG-A------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AGAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGU A--GA-CU-- -------U|G -GC-GU-UGG -CG-GA---- -G-------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------UCU -GCCAG-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CG- UUAA-GUCUA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A55n 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A55n.. ACCESSION No information KEYWORDS No information. SOURCE clone A55n. ORGANISM clone A55n. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91478|g987783 BASE COUNT 100 a 67 c 111 g 76 t 4022 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CAUUAA UC-GGAAUUA -UU-GGGN|G UAAA-GGGN- NNG-UAG-GC -G|-GA-UG- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UU-U CG-GAG-C(- UC-A)A-CUC -CG-A-AGC- 1321 -UGCA-UUUG A-AAC-UCCC U-AUCUA-GA GGA-----UA G-GC-GGAGA AAA-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -UUUUCUA-- ---------- ---------- ---------G 1501 CUU--AG-AC CUGACG-CUG AG-G------ -------CG- C-GAGA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -CU-AU-UGG -AA-G----- -U-------- 1681 -(GUC-GA)C C--------- ---------- ---------- --------CU -UUCAG-UGG 1741 C---GA---- --AS-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GAAUU-AC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Z 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Z. str. Z. ACCESSION No information KEYWORDS No information. SOURCE str. Z. str. Z. ORGANISM str. Z. REFERENCE 1 AUTHORS Kahane,S., Metzer,E. and Friedman,M.G. TITLE Evidence that the novel microorganism 'Z' may belong to a new genus in the family Chlamydiaceae JOURNAL FEMS Microbiol. Lett. 126, 203-208 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27666|g508601 Former RDP Sids: Smk.sp isolate_name= Z BASE COUNT 402 a 330 c 472 g 340 t 2832 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAU-GC-- UGAC-GGC-G -UGG-AU--G AGGC-AUGCG A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAGU-AA (--CU----- ---------- ---------- 241 --------UG -)UU-ACUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-AG-GG-U UAGU---AAU -AC-AUGAG- UAA--CUU-A C-CUCU---U -ACCU-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-GA 481 AU-GAG---- ---------- -------G-A GA-G--C-U- ---GGG-(-- --------GU 541 AG-------- -)-CCU---G GU-UU----C UU--CAAA-- ---GUUGGG- GA--UUCU-- 601 --(------- ---GCAA--- ---)------ ---AGAA--| -CCUUG--C- G--GUA---- 661 ----GGAG-- AGA---G-|G CUCAU----- -GG|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-UA- AGA------- -----CG-UC 781 U-AG-G-CG| -G-GCU--(G -AGA)-GGUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCAU U-CGCAAU-- GG-GC-(GAA A)--CG-UGA CGAU|-GCGA CGCC-GU-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GC-UA 1021 --AG-GAA-- CA-AGAA-AA --GGU-AAC( -----GAAUA ---------) AUUG-CC-UA 1081 ---------- -------AUU U-GA-GGGU- A-CUU-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CAUUAA UC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GC -G|-GG-UA- 1261 A-GC-AAG|U CAG---AUGU G-AAA-UU-C CG-GAG-C(- UC-A)A-CUC -CG-G-AGC- 1321 -UGCA-UUUG A-AAC-UACU U-AUCUU-GA GGG-----UG G-AC-GGAGA AAA-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UAGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUUUCUA-- ---------- ---------- ---------G 1501 UUC--UU-UC CUGACG-CUG AG-G------ -------CG- C-GAGA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(GUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CU-GU--A 1621 AAC-A-CUGC A--UA-CU-- -------U|G -GU-GU-AGU -CG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -GACUG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUG C|C|A-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGC-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C A)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UU|--- -------U-A ---GAGG--- -AC----CGC 1981 -AUC-A--(- GAGA-)-UGA -U-GUUU--- G--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----C---| CUU-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --UG(-GU-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 U-CGA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAA GGC-A-G-C- GA-AGC-C(G 2881 -AAA)GGUG- ---------- AA-GCAAA-U CCCA--AAAG -CU-C-GAU- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-UGC- -UAGUA-AUG 3001 AC-GUG-(UC -AGCAAU)-A ACG-UCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACGCCGCCC- GUC-ACA--- --UCA-UGGA A--GU-UGG- UU-UU-ACCC -GAA-G-UCG 3121 U-CGA-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-AC-GC-CG A-AGGU-AGG GCU-GA-UG- ACU-GGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.2.2 CHLAMYDIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.10.2.2 CHLAMYDIA_GROUP. ORGANISM 2.10.2.2 CHLAMYDIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.pneum3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 AUTHORS Wilson,P.A., Phipps,J., Samuel,D. and Saunders,N.A. TITLE reaction-enzyme immunoassay for the detection of Chlamydia pneumoniae Development of a simplified polymerase chain JOURNAL J. Appl. Bacteriol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49873|g870992 BASE COUNT 404 a 301 c 432 g 342 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAAUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AGU -AC-AUAGA- UAA--UCU-G C-CCUC---A -ACUU-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GAUC-G--C UAAUACC-GA 481 AU-GUA---- ---------- -------G-U GU-A--A-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A UA-UA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----GAGG-- AAG---A-|G UUUAU----- -GC|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-GUC- 1321 -AGCA-UUUA A-AAC-UAUC U-UUCUA-GA GGA-----UA G-AU-GGGGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----AAC 1981 -UGU-A--(- GAAA-)-UAC -A-GCUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-U-AG -UA--CAGAA GGU-A-G-C- AA-GAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CCUA--AAAG -CU-A-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCCAU)-A ACG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-ACCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCUA-- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU-GGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC C(GGA-A)GG UGGGGC--UG GAUCA..... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.pneumo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia pneumoniae str. TW183. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia pneumoniae str. TW183. ORGANISM Chlamydia pneumoniae. REFERENCE 1 AUTHORS Gaydos,C.A., Palmer,L., Quinn,T.C., Falkow,S., Brooks,G.F. and Eiden,J.J. TITLE C. pneumoniae 16S rRNA sequence JOURNAL Int. J. Syst. Bacteriol. 43, 610-612 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06108 isolate_name= TW183 BASE COUNT 420 a 316 c 452 g 366 t 2822 others ORIGIN 1 .......... .......... .......... ...UUUUCUG AGAAUU(U-G A)U-CUU|-A 61 GUUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAAUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AGU -AC-AUAGA- UAA--UCU-G C-CCUC---A -ACUU-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GAUC-G--C UAAUACC-GA 481 AU-GUA---- ---------- -------G-U GU-A--A-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A UA-UA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----GAGG-- AAG---A-|G UUUAU----- -GC|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-GUC- 1321 -AGCA-UUUA A-AAC-UAUC U-UUCUA-GA GGA-----UA G-AU-GGGGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----AAC 1981 -UGU-A--(- GAAA-)-UAC -A-GCUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-U-AG -UA--CAGAA GGU-A-G-C- AA-GAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CCUA--AAAG -CU-A-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCCAU)-A ACG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-ACCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCUA-- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU-GGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC C(GGA-A)GG UGGGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.pneum4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 AUTHORS Wilson,P.A., Phipps,J., Samuel,D. and Saunders,N.A. TITLE reaction-enzyme immunoassay for the detection of Chlamydia pneumoniae Development of a simplified polymerase chain JOURNAL J. Appl. Bacteriol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49874|g870990 BASE COUNT 398 a 301 c 426 g 332 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGG- 361 -A-AG-GG-U UAGU---AGU -AC-AUAGA- UAA--UCU-G C-CCUC---A -ACUU-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GAUC-G--C UAAUACC-GA 481 AU-GUA---- ---------- -------G-U GU-A--A-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A UA-UA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----GAGG-- AAG---A-|G UUUAU----- -GC|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-GUC- 1321 -AGCA-UUUA A-AAC-UAUC U-UUCUA-GA GGA-----UA G-AU-GGGGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----AAC 1981 -UGU-A--(- GAAA-)-UAC -A-GCUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-U-AG -UA--CAGAA GGU-A-G-C- AA-GAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CCUA--AAAG -CU-A-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCCAU)-A ACG-CCGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-ACCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCUA-- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU-GGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC C(GGA-A)GG UGGGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.pneum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia pneumoniae. ORGANISM Chlamydia pneumoniae. REFERENCE 1 AUTHORS and Grayston,J.T. Kuo,C.C., Shor,A., Campbell,L.A., Fukushi,H., Patton,D.L. TITLE lesions of coronary arteries. Demonstration of Chlamydia pneumoniae in atherosclerotic JOURNAL J. Infect. Dis. 167, 841-849 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S56213 BASE COUNT 238 a 164 c 252 g 197 t 3525 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......G-U GU-A--A-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A UA-UA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----GAGG-- AAG---A-|G UUUAU----- -GC|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UUC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCGG CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCG-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-GUC- 1321 -AGCA-UUUA A-AAC-UAUC U-UUCUA-GA GGA-----UA G-AU-GGGGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGGAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----AAC 1981 -UGU-A--(- GAAA-)-U.. .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.tracho 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia trachomatis str. 434. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia trachomatis str. 434. ORGANISM Chlamydia trachomatis. REFERENCE 1 AUTHORS Weisburg,W.G., Hatch,T. and Woese,C.R. TITLE Eubacterial Origin of Chlamydiae JOURNAL J. Bacteriol. 167, 570-574 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59178 isolate_name= 434 BASE COUNT 401 a 324 c 472 g 358 t 2821 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUUUCUG AGAAUU(U-G A)U-CUU|-G 61 GUUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCAAUU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AAUUG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AAU -GC-AUAGA- UAA--UUU-G U-CCUU---A -ACUU-G-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GGCC-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-C GA-U--A-UU ---UGG-(-- --------GC 541 AU-------- -)-CCG---A GU-AA----C GU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUAG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----AAGG-- GAG---A-|G UCUAU----- -GU|----GA U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GG-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-UU 1021 --GG-GAA-- UA-AGAG-AA --GGC-GGU( -----UAAUA ---------) CCCG-CU-GG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GU-AAG|U UAG---UUGU C-AAA-GA-U CG-GGG-C(- UC-A)A-CCC -CG-A-GUC- 1321 -GGCA-UCUA A-UAC-UAUU U-UUCUA-GA GGG-----UA G-AU-GGAGA AAA-G|GGAA 1381 UU-UCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------U-A ---UAUG--- -AC----CGC 1981 -GGC-A--(- GAAA-)-UGU -C-GUUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAU-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA GGU-A-G-C- AA-GAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CCUC--AAAG -CU-G-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCCAU)-A ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-ACCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU-AGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC C(GGA-A)GG UGGGGU--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.spSFPD 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia sp. str. SFPD. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia sp. str. SFPD. ORGANISM Chlamydia sp. REFERENCE 1 AUTHORS Smith,T.F. Zhang,Y.-X., Fox,J.G., Ho,U., Zhang,L., Stills,H.F.Jr. and TITLE Comparison of the major outer membrane protein (MOMP) gene of mouse pneumonitis (MOPn) and hamster SFPD strains of Chlamydia trachomatis with other chlamydial strains JOURNAL Mol. Biol. Evol. 10, 1327-1342 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83313|g537505 isolate_name= SFPD BASE COUNT 377 a 311 c 445 g 339 t 2904 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~UUCUG AGAAUU(U-G A)U-CUU|-G 61 GUUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-ANGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -ACGAUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GAUUG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---NAU -AC-AUAGA- UNA--UUU-G U-CCUU---A -ACUU-G-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GGCC-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-C GU-A--G-AU ---UAG-(-- --------GC 541 AU-------- -)-CUA---A AU-UA----C GU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----AAGG-- GAG---A-|G UCUAU----- -GU|----GA U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GG-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-UU 1021 --GG-GAA-- UA-AGAG-AA --GAC-GGU( -----UAAUA ---------) CCCG-UU-GG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC UGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GU-AAG|U UAG---UUGU C-AAA-UC-U CG-GGG-C(- UC-N)A-CCC -CG-A-NUC- 1321 -GGCA-UCUN A-AAC-UNUU U-UUCUA-GA GGG-----UA G-AU-GGAGA AAA-G|GGAA 1381 UU-UCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUNUN-- ---------- ---------- ---------A 1501 UUU--AU-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UG-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CC -AUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGG 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------C-A ---UAUG--- -AC----CGC 1981 -GGC-A--(- GAAA-)-UGU -C-GUUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAU-AU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U NA)-CCA-G- -GAGG-A-AG 2761 N-NN-ANG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA GGU-A-G-C- AA-GAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CCUC--AAAG -CU-G-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCCAU)-A ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UNG- UU-UU-ACCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGA-G-A G-GC-GC-CC A-AGGU-NAG GCU-GA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.psitta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia psittaci str. 6 BC ATCC VR-125. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia psittaci str. 6 BC ATCC VR-125. ORGANISM Chlamydia psittaci. REFERENCE 1 AUTHORS Weisburg,W.G., Hatch,T.P. and Woese,C.R. TITLE Eubacterial Origin of Chlamydiae JOURNAL J. Bacteriol. 167, 570-574 (1986) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-125 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M13769 isolate_name= 6 BC BASE COUNT 411 a 324 c 454 g 363 t 2824 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUUCUG AGAAUU(U-G A)U-CUU|-G 61 GUUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAAUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AAU -AC-AUAGA- UAA--UCU-G U-CCUC---A -ACUU-G-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AU-G--U-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A AA-CA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----GAGG-- GAG---A-|G UCUAU----- -GG|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-UU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -AGCA-UCUA A-UAC-UAUC U-UUCUA-GA GGG-----UA G-AU-GGAGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AC-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UA-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CU -AUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----CGC 1981 -GGC-A--(- GAAA-)-UGU -C-GUUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA GGU-A-G-C- AA-UAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CCUC--AAAG -CU-G-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCUAU)-A ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-GCCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU-GGGA-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC C(GGA-A)GG UGGGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.psitt3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia psittaci.. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 AUTHORS Wilson,P.A., Phipps,J., Samuel,D. and Saunders,N.A. TITLE Development of a simplified polymerase chain reaction-enzyme immunoassay for the detection of Chlamydia pneumoniae JOURNAL J. Appl. Bacteriol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49872|g870991 BASE COUNT 395 a 308 c 426 g 337 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAAUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AAU -AC-AUAGA- UAA--UCU-G U-CCUC---A -ACUU-G-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AU-G--U-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A AA-CA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----AAGG-- GAG---A-|G UCUAU----- -GG|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGU-UU- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-UU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -AGCA-UCUA A-UAC-UAUC U-UUCUA-GA GGG-----UA G-AU-GGAGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AC-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UA-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CU -AUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----CGC 1981 -GGC-A--(- GAAA-)-UGU -C-GUUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA GGU-A-G-C- AA-UAU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CCUC--AAAG -CU-G-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCUAU)-A ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-GCCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clm.psitt2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chlamydia psittaci.. ACCESSION No information KEYWORDS No information. SOURCE Chlamydia psittaci. ORGANISM Chlamydia psittaci. REFERENCE 1 AUTHORS Wilson,P.A., Phipps,J., Samuel,D. and Saunders,N.A. TITLE Development of a simplified polymerase chain reaction-enzyme immunoassay for the detection of Chlamydia pneumoniae JOURNAL J. Appl. Bacteriol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49871|g870989 BASE COUNT 395 a 308 c 426 g 337 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGG-AU--G AGGC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUAAUG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGUUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-AG-GG-U UAGU---AAU -AC-AUAGA- UAA--UCU-G U-CCUC---A -ACUU-G-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AU-G--U-U- ---UAG-(-- --------GC 541 AU-------- -)-CUA---A AA-CA----U AU--UAAA-- ---GAAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--GUU---- 661 ----AAGG-- GAG---A-|G UCUAU----- -GG|----GA U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGU-UU- UGA------- -----CG-UC 781 U-AG-G-CG| -G-AUU--(G -AGA)-GAUU ----GA-C-- CGC-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU U-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGAA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-UU 1021 --GG-GAA-- UA-AGAG-AG --AUU-GGC( -----UAAUA ---------) UCCA-AU-CG 1081 ---------- -------AUU U-GA-GCGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAUUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-AA- 1261 G-GA-AAG|U UAG---AUGU U-AAA-UC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -AGCA-UCUA A-UAC-UAUC U-UUCUA-GA GGG-----UA G-AU-GGAGA AAA-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUUCUA-- ---------- ---------- ---------A 1501 UUU--AC-AC CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- AA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUU- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -AU-GU-GGA -UA-G----- -U-------- 1681 -(CUC-AA)C C--------- ---------- ---------- --------CU -AUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-AGGAGUAC 1801 ACU-C---(G CAA)---G-G GU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- -------U-A ---UUUG--- -AC----CGC 1981 -GGC-A--(- GAAA-)-UGU -C-GUUU--- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CAG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA GGU-A-G-C- AA-UAU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CCUC--AAAG -CU-G-GCC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-GUG-(UC -AGCUAU)-A ACG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-UGGG A--GU-UGG- UU-UU-GCCU -UAA-G-UCG 3121 U-UGA-C-UC -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-A G-GC-GC-CC A-AGGU-GAG GCU-GA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.10.3-MOU 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.10.3 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II. ACCESSION No information KEYWORDS No information. SOURCE 2.10.3 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II. ORGANISM 2.10.3 MOUNT_COOT-THA_ENVIRONMENTAL_CLONES_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC31 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64380 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT:general eubacteria; specif. rel MC17, MC18, MC15 BASE COUNT 265 a 229 c 334 g 218 t 3330 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGG-AU--A AGAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------UUU GGUUUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAAAA CUGAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUGAG- CAA--UCU-G C-CUUA---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GC-- C(-GAAA-)G -GNAA-U--- UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---GUU-(-- --------GU 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GCCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGG--C- G--CUU---- 661 ----UUAG-- AGG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGGA|-GCNA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--U-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-AU-UU 1021 --GG-GA--- ACAAAGC-CU --U-A-CG-( U----UAACU -----G---) -CUU-GG-AG 1081 ---------- -------G-U U-UA-UAGU- A-CCA-G-AA G-AG--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCU-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GA- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-U CA-GAG-C(- UC-A)A-CUC -UG-A-AAC- 1321 -UGCA-CUCG A-UAC-UGCU U-UGCUA-GA GGA-----CU G-GA-GAGGA GAU-U|GGAA 1381 UU-CACGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GUGAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GCG -CG-G----- -A-------- 1681 -(UUC-GA)C C--------- ---------- ---------- --------CC -GUGCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-AGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- -------C-A ---UUGU--- -GU----CGU 1981 -CGG-U--(- GAAA-)-GCC -G-GCUA--- GC-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----GC---| GCU-U..... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-GCA-CA-C GUG--CUACA AUGGC..... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64381 legacy_attribute= novel line of descented library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 273 a 238 c 339 g 213 t 3313 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGG-AU--A AGAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUUU UUUUCUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAGGG AAAAGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GCUU---AAC -AC-GUGGG- CAA--CCU-G C-CGAG---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GC-- C(-GAAA-)N -N-A--A--U UAAUACC-GC 481 AU-GU----- ---------- -------G-A UC-A--G-AG ---UGG-(-- --------AC 541 AU-------- -)-CCA---U UC-AA----A CU--CAAA-- ---GUCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGA--C- G--CUU---- 661 ----CUUG-- AGG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UU- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-AU-UG 1021 --GG-GA--- AC-AAUG-CG --CAA-AUA( U----UAACU -----G---) UAUU-UG-CG 1081 ---------- ---------U U-GA-UAGU- A-CCC-G-AA G-AG--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCU-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-GC- 1261 G-GU-AAG|U CGG---GUGU G-AAA-UC-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCA-UUCG A-UAC-UGCC G-UGCUU-GA GGA-----CU G-GA-GAGGA GAC-U|GGAA 1381 UU-UACGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GUAAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACG-CUG AG-G------ -------CA- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GGG -AG-G----- -A-------- 1681 -(UUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-CGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UCAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- -------C-A ---UCUC--- -UA----AGU 1981 -UGG-U--(- GAAA-)-GCC -A-GCGA--- GU-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AC---| AAU-U..... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-GCA-CA-C GUG--CUACA AUGGC..... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64382 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT:general eubacteria; specif. rel MC17, MC18, MC31 BASE COUNT 272 a 227 c 340 g 223 t 3314 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGG-AU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AACU UUCGCUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAGUG GAAGUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- CAA--UCU-G C-CUUA---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- C(-GAAA-)N -NNAU----- UAAUACC-GC 481 AU-GU----- ---------- -------G-A UC-A--G-AG ---GGG-(-- --------AC 541 AU-------- -)-CCC---U UC-GA----A AU--CAAA-- ---GUCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGA--C- G--CUU---- 661 ----UUUG-- AGG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-AU-UU 1021 --GG-GA--- AC-AAUG-CU --UAC-GUA( U----UAACU -----G---) UACG-UG-AG 1081 ---------- ---------U U-GA-UAGU- A-CCA-G-AA G-AG--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCU-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GU -G|-GC-GC- 1261 G-CU-AAG|U CGG---GUGU G-AAA-UU-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCA-UUCG A-UAC-UGGC G-UGCUU-GA GGA-----CU G-GA-GAGGA GAC-U|GGAA 1381 UU-CAUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AUGAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACA-CUG AG-A------ -------CA- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GGG -AG-GA---- ---------- 1681 -(UUC-GA)C ---------- ---------- ---------- -------CCC -UUCUG-CGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- -------C-A ---UCUC--- -UA----AGC 1981 -UGG-U--(- GAAA-)-GCC -A-GUGA--- CU-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| AAU-U..... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-GCA-CA-C GUG--CUACA AUGGC..... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64374 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA NB: IDENT:general eubacteria; specif. rel MC17, MC15, MC31 BASE COUNT 315 a 274 c 398 g 263 t 3126 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGG-AU--A AGAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUUU UCUUUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCGAA GAACGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- CAA--UCU-G C-CUUA---A -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- C(-GAAA-)G -CAU------ UAAUACC-GC 481 AU-GU----- ---------- -------G-A UU-A--G-AG ---UGG-(-- --------AC 541 AU-------- -)-CCA---U UC-AA----A AU--CAAA-- ---GUCGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGA--C- G--CUU---- 661 ----UUUG-- AGG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUUUU U-CUCAAU-- GG-AG-(GAA A)-CCC-UGA AGGA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-AU-UU 1021 --GG-GA--- ACAAUGC-UA --CCG-AG-( U----UAACU -----G---) -UUC-GG-UA 1081 ---------- -------G-U U-GA-UAGU- A-CCA-G-AA G-AG--GAAG ---------A 1141 -GACGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GUCU-C-- 1201 AAG-CGUUGU UC-GGAUUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GU -G|-GC-GC- 1261 G-CU-AAG|U CGG---GUGU G-AAA-UU-U CG-GAG-C(- UU-A)A-CUC -CG-A-AAC- 1321 -UGCA-UUCG A-UAC-UGGC G-UGCUU-GA GGA-----CU G-GA-GAGGA GAC-U|GGAA 1381 UU-CAUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AUGAGG- AAGA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-UC CUGACA-CUG AG-A------ -------CA- C-GAAG-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CA-GU--A 1621 AAC-G-GUGC A--CG-UU-- -------U|G -GU-GU-GGG -AG-G----- -A-------- 1681 -(UUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-CGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- -------C-A ---UCUC--- -UA----AGC 1981 -UGG-U--(- GAAA-)-GCC -A-GUGA--- CU-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| AAU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--AAC- 2281 UG--UUGC-C AC-C-AAGCC ---------- ---------- ----(---GU ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGCUUAG|A 2701 G-CA-CU-C- U-GUU-CA-G A-CU-G-CCC --AU(-GU-G AA)-AGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG UAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AU........ .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11-CYANO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11 CYANOBACTERIA_AND_CHLOROPLASTS. ACCESSION No information KEYWORDS No information. SOURCE 2.11 CYANOBACTERIA_AND_CHLOROPLASTS. ORGANISM 2.11 CYANOBACTERIA_AND_CHLOROPLASTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1-CYA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1 CYANOBACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1 CYANOBACTERIA. ORGANISM 2.11.1 CYANOBACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.1 OSCILLATORIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.1 OSCILLATORIA_GROUP. ORGANISM 2.11.1.1 OSCILLATORIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trd.sp1067 4376 bp RNA RNA 02-JUL-1998 DEFINITION Trichodesmium sp.. ACCESSION No information KEYWORDS No information. SOURCE Trichodesmium sp. ORGANISM Trichodesmium sp. REFERENCE 1 AUTHORS Wilmotte,A., Neefs,J.M. and De Wachter,R. TITLE Evolutionary affiliation of the marine nitrogen-fixing cyanobacterium Trichodesmium sp. strain NIBB 1067, derived by 16S ribosomal RNA sequence analysis JOURNAL Microbiology 140, 2159-2164 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70767|g530268 Former RDP Sids: str.1067 BASE COUNT 378 a 334 c 457 g 289 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUC---A -GGUC-U-GG 421 -GAC-AA-CA G--------- ------AA-- G(-GAAA-)C -UUCU-G--C UAAUCCC-GG 481 AU-GA----- ---------- ---------- ---------- ---GCC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UAAA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-AG) -C-AUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A G-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--CCCC| UUUU-CU-UU 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGRR |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-UAG-AU -G|-GC-CA- 1261 U-GU-AAG|U CUG---CUGU C-AAA-AC-C CA-GGG-C(- UC-A)A-CUC -UG-G-UCA- 1321 -GGCA-GUGG A-AAC-UACA A-AGCUA-GA GUU-----UG G-UA-GGGGC AAA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UUUGCUA-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACA-UUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGC -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -GGCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -AAU-G--(- GAAA-)-CAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAGAG GGU-A-G-C- GA-ACC-C(G 2881 -AGA)GGGG- ---------- AA-GCCAA-U CCCCA-AAAC -CC-A-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CC-AC-GCCC -GAA-G-UCA 3121 U-UAC-U-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGRGG-G-G G-AU-GC-CG A-AGGU-AGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.7515 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria" sp.. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria" sp. ORGANISM "Oscillatoria" sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 246 a 236 c 314 g 199 t 3381 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .GC-GUGAG- A-A--UCU-G C-CUUC---U -GGUC-U-GG 421 -GAC-AA-CA G--------- ------AG-- G(-GAAA-)C -UUCU-G--C UAAUCCC-GG 481 AU-AA----- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UNN---- ---)------ ---------| -----U--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CUMGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(A -GGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-MG- C-M---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCNA GACC-GC-NN 961 G-G-GG-G-A G-GAA--G-G CU(--CN-AG --)GG-UUGU AAA--CCCN| UUUU-CU-UU 1021 --GG-GAAA- GA-A------ ---------( ------GNNN ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UCAG ---------C 1141 -CUCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ....CAG-GU -G|-GC-CA- 1261 U-GU-AAG|U CUG---CUGU C-AAA-AC-C CA-GGG-C(- UU-A)A-CUC -UG-U-UUA- 1321 -GGCA-GUGG A-AAC-UACA A-AGCUA-GA GUC-----UG G-UA-GGGGC CAA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-UAGG- 1441 -U-G-GC(-G AA-A)GCGC- -UUGGCUA-- ---------- ---------- ---------G 1501 ACC--AG-AA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CU-GU--- 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGC -CU-G----- UA-------- 1681 -(UNG-AN)C C--------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC N|N|R-CNU- G-GGGAGUAC 1801 GCA-C---(C CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACC AUGGU-C-UG -GA--CMGAG GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- NA-NCAAA-U CCCUA-AAAC -NA-G-GCC- UCCGUUCCGA 2941 U-UGCAGGC- (UGCCAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -CGC-CU)-C CUG-CGGUN- ANU-C-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.6304 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria" sp.. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria" sp. ORGANISM "Oscillatoria" sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 272 a 239 c 324 g 227 t 3314 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .........U GAGU---AAC -AC-GUGAG- A-A--UCU-G C-CUCC---A -GGUC-G-GG 421 -NAC-AA-CA G--------- ------UN-- N(-GAAA-)C -UGCU-N--C UAAUACC-CN 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UAAAG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UN- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--NU-UG --)GG-UUGU AAA--CCNN| NUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( -----UGANC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUC.....( .......... .........) .......... |..AUG-Y-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GU -G|-GC-UN- 1261 U-UC-AAG|U CUG---CCNU U-AAA-GA-C CG-GUU-C(- UU-A)A-CUC -CG-N-UAA- 1321 -AACU-GUGG A-AAC-UGAA C-AGCUA-GA GUA-----UG G-UA-GGGGU AAG-G|GNNA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACAUCCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACA-CUG AG-G------ -------NA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGC -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCAN-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|N-CCN- G-GGGAGNNC 1801 GCN-C---(G G..)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- ...C-)-CUU -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UH-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-AG -GA--CAGAG GGN-A-G-C- AA-GCG-C(G 2881 -CGA)GUGC- ---------- AA-GCCAA-U CCCAU-AAAC -CU-U-UCC- UCAGUUCAGA 2941 U-UGAAGUU- (UGCAAC-U- C)-AACUUCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lyn.7419 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lyngbya sp.. ACCESSION No information KEYWORDS No information. SOURCE Lyngbya sp. ORGANISM Lyngbya sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 274 a 243 c 338 g 213 t 3308 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUCU---A -GAAC-G-GG 421 -GAC-AA-CA G--------- ------AG-- G(-GAAG-)C -UUCU-G--C UAAUCCC-NG 481 AU-GA----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--UCU---- 661 ----AGAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A G-GAA--A-G CC(--UU-UG --)GG-UUGU AAA--CCCN| NUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( -----GAAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UGAG ---------C 1141 -CUCGGCN-N ACUAC-ACG( CC........ .........) .......... |......... 1201 .......... .......... ........|. .......... .......... .G|-CA-AU- 1261 U-CG-AAG|U CUG---CUGU C-AAA-GA-C AG-UAG-C(- UC-A)A-CUA -CU-G-CAA- 1321 -GGCA-GUGG A-AAC-UGAA U-AGCUA-GA GUG-----CG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACG-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--NN-NA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG--A- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GU-GU-UGC -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -GGCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUUUC C|N|G-CCU- N-GGGAGUAC 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ..G-GC-UUG ACA-UG|--- ---------U ---C-CG--- -AU----UGA 1981 -UGG----(- GAAA-)-CUC -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GG-UG-UCGA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UN--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-AG -GA--CAAAG GGC-A-G-C- CN-CUU-C(G 2881 -NNN)GGAG- ---------- GANGCUAA-U CCCGU-NAAC -CU-U-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUUC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ar.sp8005 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrospira sp.. ACCESSION No information KEYWORDS No information. SOURCE Arthrospira sp. ORGANISM Arthrospira sp. REFERENCE 1 AUTHORS Nelissen,B., Wilmotte,A., Neefs,J.-M. and De Wachter,R. TITLE Phylogenetic relationships among filamentous helical cyanobacteria investigated on the basis of 16S ribosomal RNA gene sequence analysis JOURNAL Syst. Appl. Microbiol. 17, 206-210 (1994) STANDARD No information REFERENCE 2 AUTHORS Wilmotte,A.M., Neefs,J.M. and De Wachter,R. TITLE Evolutionary affiliation of the marine nitrogen-fixing Cyanobacterium Trichodesmium sp. strain NIBB 1067 derived by 16S ribosomal RNA sequence analysis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70769|g556876 (bases 1 to 1462) BASE COUNT 363 a 341 c 469 g 285 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--UCU-G G-CUCC---C -GGUC-G-GG 421 -GAC-AA-CA G--------- ------AG-- G(-GAAA-)C -UUCU-G--C UAAUCCC-GG 481 AU-GA----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----GGAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GNC-UGA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU AAA--CCCC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( -----CACAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UAAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GC-UG- 1261 U-UC-AAG|U CUG---CUGU C-AAA-GA-C AG-UGG-C(- UU-A)A-CUA -CU-G-AAA- 1321 -GGCA-GUGG A-AAC-UGAA C-AGCUA-GA GUA-----CG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GU-GU-AGC -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCU 1981 -UGG-U--(- GAAA-)-GCC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-G-GG -GA--CAAAG GGU-A-G-C- CA-AGA-C(G 2881 -CGA)GUCU- ---------- GA-GCCAA-U CCCGU-AAAC -CU-C-UCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UAG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CCG--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-A-G G-AU-NN-CG A-AGGC-AGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.agardh 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria agardhii" str. CYA 18. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria agardhii" str. CYA 18. ORGANISM "Oscillatoria agardhii". REFERENCE 1 AUTHORS Nelissen,B.J.M., De Baere,R., Wilmotte,A. and De Wachter,R. TITLE Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis JOURNAL J. Mol. Evol. 42, 194-200 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84811 isolate_name= CYA 18 BASE COUNT 387 a 331 c 471 g 274 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- A-A--CCU-G C-CUCU---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAACCC-GG 481 AU-GA----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AGAG-- AGG---G-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-G-C-UGA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A G-GAA--G-G UU(--CU-UG --)GA-UUGU CAA--CCCC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------CACA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--AAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GAGU- CCG-UAG-GU -A|-GU-CA- 1261 U-CC-AAG|U CUG---CUGU U-AAA-GA-G CG-AGG-C(- UU-A)A-CCU -CG-U-AAA- 1321 -GGCA-GUGG A-AAC-UGGA A-GACUA-GA GUG-----UA G-UA-GGGGC AGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCU--AU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CG-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GU-GU-GGC -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCCG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- UUAA-GUUUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---CUGG--- -AA----UCU 1981 -CCU-U--(- GAAA-)-GGG -G-AGAG--- UG-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AA---| CCA-GA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGCG-A-GG -GA--CAGAG AGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGA- ---------- GA-GCGAA-U CUCAU-AAAC -CC-U-GGC- ACAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GG-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GAG- CC-AC-GCCC -GAA-G-UCA 3121 U-UAC-U-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-G G-GU-GC-CG A-AGGC-GGG GUU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mccl.10mfx 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcoleus sp. str. 10 mfx (Australia). ACCESSION No information KEYWORDS No information. SOURCE Microcoleus sp. str. 10 mfx (Australia). ORGANISM Microcoleus sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS isolate_name= 10 mfx (Australia) BASE COUNT 241 a 241 c 344 g 209 t 3341 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-YG-GG-U GAGU---WAC -GC-GUGAG- A-A--CCU-G C-CUCG---A -GGA--G-GG 421 -GAU-AA-CA G--------- ------CG-- G(-GAWA-)C -UNCU-G--C UAAUACC-CH 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---AG----- ---------- 601 --(------- ---AAAU--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UGAG-- AGG---G-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAN-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUWUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G CC(--NA-NG --)GG-UWGU AAA--CUNC| NNUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GCAC ---------) ---------- 1081 ---------- ---------- U-AA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -CNNGGCA-A ACNC.....( .......... ...GGUA-A) U-N-C-GGAG |-GAGG-C-- 1201 UAG-CGUUAU CC-GGAAUUW -UU-GGGC|G UUAA-GCGU- UCG-UWG-GC -G|-GC-UU- 1261 U-UC-UAG|U CUK---CUGU C-UAA-GG-C CG-AGK-C(- UU-U)A-CUU -CG-G-AAA- 1321 -GGCW-GUGG A-AAC-UUAA A-AGCUW-GA GGU-----CG G-UW-GGGGC AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACW-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UYUGCUG-- ---------- ---------- ---------G 1501 GCC--GA-AC CUKANG-CUK AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUWC)-CCC- ----AGUA-G UC----CUW- G-CC-GU--U 1621 AAC-G-AUGG A--GA-CU-- -------W|G -GU-GU-UGC -CU-G----- -U-------- 1681 -(AUN-GA)C C--------- ---------- ---------- --------YG -GGCAG-UGC 1741 CG--AA---- --GC-(CNA- ---C)G-CG- UUWA-GUCUC C|N|G-CCN- G-GGGAGKWC 1801 GCN-C---(G CNA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|...G 2161 GU-NG-UGCA UN|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUNU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC WACCC-UU-G |-UC--CUU- 2281 WG--UUKC-C AU-CC----- ---------- ---------- ---U(---UW ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-CA-CU-C- U-WGG-GA-G A-CU-G-CCG --GU(-GA-U WA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C YAUAU-G-UC -CU--GGGC- 2821 G-ACN-CN-C GUA--CUWCN AUGGU-C-GG -GA--CACCG AGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCUNA-U CUCUC-AAAC -CC-G-GCC- UCNGUUCNGA 2941 U-UGCAGGC- (UGCNAC-U- U)-GCCUNCA -UGAAGG-AG -GAAU-CGC- -UAGUN-AUC 3001 GC-AGG-(UC -AGC-AY)-A CUG-CGGYN- AAU-C-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.willam 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria williamsii". ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria williamsii". ORGANISM "Oscillatoria williamsii". REFERENCE 1 AUTHORS Wilmotte,A.M.R., Turner,S. and Pace,N. TITLE Taxonomical study of marine oscillatorialean strains (Cyanophyceae, Cyanobacteria) with narrow trichomes. II. Nucleotide sequence analysis of the 16S ribosomal RNA JOURNAL J. Phycol. 28, 828-838 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58361 Former RDP Sids: Osc.7105 NB: former name Oscillatoria sp. BASE COUNT 325 a 298 c 424 g 246 t 3083 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--CCU-G C-CUCG---A -GGAG-G-GG 421 -GAU-AA-CA G--------- ------UG-- G(-GAAA-)C -UGCU-G--C UAAUACC-CU 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---AG----- ---------- 601 --(------- ---AAAU--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UGAG-- AGG---G-|G CUCGC----- -GU|----CY G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UUACY-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCA-GA-GU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ---------( ---------- ---------) ---------- |--------- 1201 ---------- ---------- --------|- ---------- ---------- --|------- 1261 --------|- ---------- ---------- --------(- ----)----- ----G-AAA- 1321 -GGCA-GUGG A-AAC-UGAA A-AGCUA-GA GGU-----CG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--GA-AC CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--GA-CU-- -------A|G -GU-GU-UGC -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUCUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCG--- -AA----UCU 1981 -CGG-C--(- GAAA-)-GUU -G-AGAG--- UG-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UU.. ...)...... .......... .......... AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CC----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|G 2701 G-CARCUAC- UACGG-GACG A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 U-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CAUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAGCG AGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCUAA-U CUCUC-AAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCCCCC- GUC-ACA--- --CCA-UGGA A--GU-CGG- CC-AU-GCCC -GAA-G-UCA 3121 U-UAC-U-CU -AA-CCG--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-A-G G-GU-GC-GG A-AGGG-AGG GCU-GA-UG- ACY-CGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.limnet 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria limnetica" str. Solar-Lake. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria limnetica" str. Solar-Lake. ORGANISM "Oscillatoria limnetica". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS isolate_name= Solar-Lake BASE COUNT 242 a 251 c 339 g 183 t 3361 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .......AG- A-A--CCU-G --CUWC---C -GGAG-G-GG 421 -GAU-AA-CA G--------- ------CG-- G(-GAAA-)C -UNCU-N--C UNAUACC-NN 481 AU-AC----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----AAAA-- ---GG----- ---------- 601 --(------- ---UNAG--- ---)------ ---------| -----C--C- G--CCG---- 661 ----GGAN-- ACG---G-|G CUCNC----- -NU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -U-UUU--(G -AGA)-GGAA ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UWCG)--G GAG-GC-AG- C-A---NU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UNA CGGA|-GCCA GACC-GC-GU 961 N-G-GG-G-A G-GAA--G-G CC(--CN-NG --)GG-UUGU AAA--CCCN| NNUU-CU-CA 1021 --GG-GAA-- GA-------- ---------( ------AACN ---------) ---------- 1081 ---------- ---------- --NA-CGGU- A-CCU-G-AG G-AA--AAAG ---------C 1141 GCUCGGCU-N ACUC.....( .......... .........) .........G |-GAGG-C-- 1201 WAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UWAA-GCNU- UCG-UAG-GG -G|-GC-UC- 1261 G-UC-WAG|U CUG---CUGU C-AAA-GC-U CG-GAG-C(- UC-A)W-CUC -UG-A-AGG- 1321 -GUUA-GUGG A-AAC-UNGG G-AGCUA-GW GGG-----CG G-CA-GGGGC AGA-A|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UUAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-A)GCGU- -UCUGCUN-- ---------- ---------- ---------G 1501 GCC--GC-GC CUNACC-CUN AG-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-RU-UGG -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GUCGG-CGC 1741 CG--AA---- --G--(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCN- G-GGGAGNAN 1801 GCA-S---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .G-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GG-UCA |---C|U--G 2161 GU-KG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---YG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC UUCCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CC-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AN)-ACC-G- -GAGG-A-AG 2761 G-UN-NGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-CC -CU--NGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAGAG GGA-A-G-C- GA-AGC-C(U 2881 -CGA)GGUK- ---------- GA-GCCAA-U CCCAC-AAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- N)-GCCUNCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD31 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26218|g498420 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 66 c 74 g 59 t 4110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... U-UAUC---C -UAUG-U-UC 421 -AAU-AG-UC A--------- ------UG-- G(-GAAA-)C -UGCC-U--C GCUU------ 481 ---------- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ---------- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- ---------- 661 ---------- --------|- ---------- ---|------ ---------- ---------- 721 ---------( ---------) ---------- -|-------- ---------- ---------- 781 ---------| --------(- ----)----- ---------- -----|---- ---------- 841 (--------- ---)------ ---------- -(----)--- ---------- ---------- 901 ---------- ---------- ------(--- -)-------- ----|----- ---------- 961 ---------- ---------- --(------- --)------- ---------| ---------- 1021 ---------- ---------- ---------( ---------- ---------) ---------- 1081 ---------- ---------- ---------- ---------- ---------- ---------- 1141 ---------- ---------( ---------- ---------) ---------- |--------- 1201 ---------- ---------- --------|- ---------- ---------- --|------- 1261 --------|- ---------- ---------- --------(- ----)----- ---------- 1321 ---------- ---------- ---------- ---------- ---------- -----|---- 1381 ---------- -------(-- -----)---- ---------- ---------- ---------- 1441 -------(-- ----)----- ---------- ---------- ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---(------ ----)----- ---------- ---------- ---------- 1621 ---------- ---------- --------|- ---------- ---------- ---------- 1681 -(------)- ---------- ---------- ---------- ---------- ---------- 1741 ---------- -----(---- ----)----- ---------- -|-|------ ---------- 1801 --------(- ---)------ ---------- ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -(-------- -)-------- 1921 ---------- ---------- ------|--- ---------- ---------- ---------- 1981 --------(- -----)---- ---------- ---------- ---------- --(------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| ---------- |----|---- 2161 ---------- --|------- -------|-- ---------- |----(---- -)-------- 2221 -----(---- ---)------ ---------- ---------- ---------- |--------- 2281 ---------- ---------- ---------- ---------- ----(----A ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 ---------- ---------- ---------- ----(----- --)-----G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-G CUUAU-G-UC -UG--GGGC- 2821 C-ACA-CA-C AUC--CUACA AUGGG-A-AG -GA-ACAACG GGU-U-G-CC AA-GCC-G(U 2881 -AAG)CGGA- ---------- -A-GCUAA-U CCCAUCAAAA -CU-U-CCC- CCAGUUCAGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGC-CG -GACU-UGG- -UAGUA-AUC 3001 GC-GGG-(UC -AG-CAG)-A CCG-CGGUG- AAUAC-GUU- CUC-ACU-CU UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.2 ANABAENA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.2 ANABAENA_GROUP. ORGANISM 2.11.1.2 ANABAENA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chrc.7203 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chroococcidiopsis sp.. ACCESSION No information KEYWORDS No information. SOURCE Chroococcidiopsis sp. ORGANISM Chroococcidiopsis sp. REFERENCE 1 AUTHORS Turner,S. JOURNAL Unpublished (1994) STANDARD No information COMMENTS BASE COUNT 358 a 335 c 457 g 263 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-UU (--UU----- ---------- ---------- 241 --------CG -)GA-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUU---U -GGAC-C-GG 421 -GAC-AA-CU G--------- ------CU-- G(-GAAA-)C -GGCA-G--C UAAGACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------CU 541 UG-------- -)-GGU---- ---------- ----GAAA-- ---UA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--A- G--CCA---- 661 ----AAAG-- AGG---A-|G CUCGC----- -GA|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UCGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GCAA U--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-AC- 1261 A-UC-AAG|U CUG---CUGU C-AAA-GC-C CC-CAG-C(- UU-A)A-CUG -GG-A-AGA- 1321 -GGCG-GUGG A-AAC-UGGU G-AGCUA-GA GAG-----CA A-UA-GGGGU AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUACUA-- ---------- ---------- ---------G 1501 GUU--GC-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UUC -UC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGGAG-UGC 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----CCC 1981 -GUG-G--(- GAAA-)-CUA -U-GGGG--- UG-------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CCA-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAACG GGA-A-G-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GCAAA-G CCCAGCAAAC -CG-U-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -ASC-AU)-A CGG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CC-AC-GCCC -GAA-G-UCA 3121 U-UAC-U-CU -AA-CCA--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-A-G G-AU-GC-CG A-AGGC-AGG GCU-GA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctx.desert 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Calothrix desertica". ACCESSION No information KEYWORDS No information. SOURCE "Calothrix desertica". ORGANISM "Calothrix desertica". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 261 a 207 c 290 g 218 t 3400 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .......U-- A(-GAAA-)U -GACU-G--C UAAUACC-GN 481 AU-RU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAAA-- AAG---A-|G CUCGC----- -GU|----CA G--AUUA-G- CUA-G---UA 721 GG-UG-GU-( GU-AAG-AG) -A-CUACC-U A|-GGC-UN- CGA------- -----UC-UG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CU(--CU-UN --)GG-UCGU AAA--CCNN| UUUU-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UUAA ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CUU-G-AG G-AA--UAAG ---------C 1141 -AUCGGCN-N ACUCU....( .......... .........) .......... |......... 1201 .......... ......AUGR -UU-GGGC|G UAAA-GCG-- CUG-CAG-GU -G|-GU-UU- 1261 U-AU-AAG|U CUG---CUGU U-AAA-GC-G UU-AGG-C(- UN-A)A-CCU -AA-U-AAG- 1321 -GGCA-GUGG A-AAC-UAUA A-GACUA-GA GUA-----UG U-UA-GGGGU AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GAC--AA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UACCU-- -------A|G -GC-GU-UNC -CC-G----- -U-------- 1681 -(AUN-GA)C C--------- ---------- ---------- --------CG -GGNAU-UGU 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GCA-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ GG-------- ----AG---| CGC-GA-ACM |---C|M--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UMA|-G C-U---SG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UG-G |-UU--UUU- 2281 AG--UUGC-U AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C CA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -M-AGUC-AG CMU-G-CC-C NNUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACM AUGCU-A-CG -AA--CVRAG GGC-A-G-C- UA-GUU-A(G 2881 -CAA)UAAC- ---------- AU-GCAAA-U CUCMG-AAAU -CG-U-AGC- UCMGUUCMGA 2941 U-UGAAGGC- (UGCMAC-U- C)-GCCUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -MGC-AU)-A CUG-CAGUR- AAUUC-GUU- UCC-R..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scyt.7110 4376 bp RNA RNA 02-JUL-1998 DEFINITION Scytonema sp.. ACCESSION No information KEYWORDS No information. SOURCE Scytonema sp. ORGANISM Scytonema sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS PCC 7110 = ATCC 29171 BASE COUNT 264 a 229 c 327 g 207 t 3349 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| .....C--U- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GU|----CC G--AUUA-G- UGA-G---UU 721 GG-UG-UG-( GU-AAG-AG) -C-GCACC-A A|-GAC-GG- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCWA UACC-GU-GU 961 G-C-GG-G-A G-GAA--G-G CN(--CU-UG --)GG-UUGU AAA--CCNN| UUUU-CU-CA 1021 --GG-GAA-- NA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-AGGU- K-CUU-G-AG G-AA--URAG ---------C 1141 -ANCGGCU.. ......GUG( CCA--GCAGC CGCGGUA-A) U-A-U-ACGA |-GUAG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-CGGU- C-G-CAG-GU -G|-GU-UU- 1261 A-UC-AAG|U CGG---CUGU C-AAA-GC-G UC-UGG-C(- UC-A)A-CUA -GA-U-AAG- 1321 -GGCA-GUGG A-AAC-UGAG A-GACUA-GA GUA-----AG G-UA-GGGGU AGA-G|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 ACU--AU-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UAC -GC-G----- -U-------- 1681 -(AUN-GA)C C--------- ---------- ---------- --------CG -CGUAG-UGC 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GUANC C|A|G-CCN- N-GGGAGNAC 1801 GCC-N---(G CNN)---C-G GC-C...... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .....U-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCC 1981 -C-A-U--(- GAAA-)-GUU -G-UGWG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GU-GGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UA--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C WA)-ACC-G- -GAGG-A-AG 2761 G-UW-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-UG -GW--CWGAG GGC-A-G-C- AA-GCA-U(G 2881 -UGA)AUGC- ---------- AA-GCAAA-U CUCAC-AAAC -CA-U-GGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCN -UGAAGG-UG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUG- AAUUC-GUN- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fis.7414 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fischerella sp.. ACCESSION No information KEYWORDS No information. SOURCE Fischerella sp. ORGANISM Fischerella sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 255 a 228 c 310 g 213 t 3370 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .........C -GC-GUGAG- A-A--UCUAG C-CUUC---A -GGUU-C-GG 421 -NNC-AA-CA ---------- ------UU-- G(-G----)- ------G--C UAAUACC-GN 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GU 541 GA-------- -)-GGU---- ---------- -----AAA-- ---AG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--U- U--CCU---- 661 ----UAAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GU-( GU-AAG-GG) -A-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--NU-UG --)GG-UUGU WAA--CCUN| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( -------UCU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 GAUCGGCU-W ACUCC-GUG( CCA--GCAG- CGCGGUA-A) U-A-C--GAG |-UAUG-C-- 1201 WAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-CGGU- CCG-CAG-GU -G|-GU-UG- 1261 U-GU-GUG|U CUA---UUGU C-AAA-GG-G UC-AUG-C(- UU-A)A-CAU -GA-U-AAA- 1321 -GGCA-GUGG A-AAC-UACA C-GACUA-GA GUR-----CG U-UC-GGGGC AGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GCC--UK-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UGA -GA-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CU -CUCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCN- G-GGGAGURC 1801 GCA-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .).......U 2221 KG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CW-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGN-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-C-GA -GA--CAAAG GGC-A-G-C- AA-GCA-G(G 2881 -UAA)CUGC- ---------- AA-GCAAA-U CUCAU-AAAC -UC-G-GGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-UG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(HC -AGC-AU)-A CUG-CGGUG- AAUU...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clrg.frits 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Chlorogloeopsis fritschii". ACCESSION No information KEYWORDS No information. SOURCE "Chlorogloeopsis fritschii". ORGANISM "Chlorogloeopsis fritschii". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 244 a 229 c 320 g 202 t 3381 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......WAC -GC-GUGAG- A-A--UCU-G G-CUCU---A -GGUU-C-GG 421 --AC-WA-CC A--------- ------CU-- G(-GAAA-)C -GG-U-N--C UAAUACC-GN 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AG-A------ -)-GGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---CUAG--- ---)------ ---------| -----C--U- G--CCU---- 661 ----AGAG-- AUG---A-|G CUCGC----- -GU|----CU N--AUUW-G- CUA-G---AU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A U|-GGC-GA- CKA------- -----UC-WG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----NA-U-- CAG-C|C-AC -WCUGG-G-A 841 (CUGA-GA-C WCG)--GCCC -NGM-C-UCC -(UWCG)--G GAG-GC-WG- C-W---GU-G 901 GGG-AAUUUU C-CGCWAU-- GG-GC-(GAA A)-GCC-UCA CGGA|-GCWA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU WAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--GAAG ---------C 1141 -WUCGGCC-C CU.......( .......... .........) .......... |..AUC-U-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- C-G-UAG-GU -G|-GU-GA- 1261 U-GC-AAG|U CUA---UUGU C-AAA-GC-G UG-CGG-C(- UC-A)A-CCG -CA-U-AAA- 1321 -GGCA-GUGG A-AAC-UGUG U-AACUA-GA GUG-----CA U-UC-GGGGC AGG-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -CCUGCUA-- ---------- ---------- ---------G 1501 GCU--GC-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UGC -GU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -CGCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|G|G-CCU- G-GGGAGUAC 1801 GCN-C---(G CAA)---G-U GA........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... ......W|-G C-U---YG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNN NA-------- CGAG-C--GC AACCC-UN-G |-UU--CUU- 2281 AG--UUGC-Y AG-CUC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NUN|G 2701 G-CW-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-NA-C WW)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-C-AA -GA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGC- ---------- AA-GCAAA-U CUCGU-AAAC -UU-G-GGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUUC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clrg.spHTF 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Chlorogloeopsis" sp. str. HTF PCC 7518. ACCESSION No information KEYWORDS No information. SOURCE "Chlorogloeopsis" sp. str. HTF PCC 7518. ORGANISM "Chlorogloeopsis" sp. REFERENCE 1 AUTHORS Wilmotte,A., Van der Auwera,G. and De Wachter,R. TITLE Structure of the 16 S ribosomal RNA of the thermophilic cyanobacterium Chlorogloeopsis HTF ('Mastigocladus laminosus HTF') strain PCC7518 and phylogenetic analysis JOURNAL FEBS Lett. 317, 96-100 (1993) STANDARD No information COMMENTS Organism information Culture collection: PCC 7518 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68780 Former RDP Sids: Msg.lamino isolate_name= HTF NB: former name Mastigocladus laminosus BASE COUNT 388 a 336 c 481 g 277 t 2894 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-A -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UG (--GA----- ---------- ---------- 241 --------AA -)CA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-A A-CUUG---U -GGUU-C-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAGACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GG 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---GAGA--- ---)------ ---------| -----C--C- G--CCA---- 661 ----CAAG-- AGG---A-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GNA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAAA ---------) ---------- 1081 ---------- ---------- UUGA-CGGU- A-CCU-G-AG G-AA--AAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GGGU- CCG-UAG-GU -G|-GU-GA- 1261 U-GU-AUG|U CUA---UUGU C-AAA-GG-U UC-UGG-C(- UU-A)A-CCA -GA-G-ACA- 1321 -GGCA-GUAG A-AAC-UGCA A-AACUA-GA GUG-----CA G-UC-GGGGC AGG-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-U UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -CCUGCUA-- ---------- ---------- ---------G 1501 GCU--GU-GA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UGC -GU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -UGCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCU 1981 -UGU-G--(- GAAA-)-CAC -A-AGAG--- UG-------- ---CC----- --(UG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUG- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---GA ---AAG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-CAG-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUGAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-U-UC -GA--CAAAG GGC-A-G-C- GA-GAC-U(G 2881 -CGA)AGUC- ---------- AA-GCAAA-U CCCAG-AAAC -GA-A-GGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AU-GCCC -GAA-G-UCG 3121 U-UAC-C-CA -AA-CUG--- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAAG-G-G G-AC-GC-CG A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cyls.7417 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cylindrospermum sp.. ACCESSION No information KEYWORDS No information. SOURCE Cylindrospermum sp. ORGANISM Cylindrospermum sp. REFERENCE 1 AUTHORS Olsen,G.J. JOURNAL Unpublished (1992) STANDARD No information COMMENTS PCC 7417 = ATCC 29204 BASE COUNT 357 a 322 c 441 g 276 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUC---A -GGUC-U-GG 421 -GAC-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----C--U- G--CCU---- 661 ----GAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- UA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-AGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CC........ CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-UA- 1261 U-GU-AAG|U CUG---CUGU U-AAA-GA-G CA-AGG-C(- UC-A)A-CCU -UG-U-AAA- 1321 -GGCA-GUGG A-AAC-UACA U-AGCUA-GA GUG-----CG U-UC-GGGGC AGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-UGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -CCU-U--(- GAAA-)-GGG -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGC- ---------- AA-GCUAA-U CCCGG-AAAC -CG-U-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGAGG-G-G G-AU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nost.muscr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nostoc muscorum. ACCESSION No information KEYWORDS No information. SOURCE Nostoc muscorum. ORGANISM Nostoc muscorum. REFERENCE 1 AUTHORS Ligon,P.J.B., Meyer,K.G., Martin,J.A. and Curtis,S.E. TITLE Nucleotide sequence of a 16S rRNA gene from Anabaena sp. JOURNAL Nucleic Acids Res. 19, 4553-4553 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59559 Former RDP Sids: Anbn.sp NB: former name Anabaena sp. BASE COUNT 389 a 333 c 469 g 298 t 2887 others ORIGIN 1 .......... .......... .......... ...GAAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-A G-CUUC---A -GGUC-G-GG 421 -GAC-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAG-AG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- UA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-AGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-AC- 1261 U-GU-AAG|U CUG---CUGU U-AAA-GA-G CA-AGG-C(- UC-A)A-CCU -UG-U-AAA- 1321 -GGCA-GUGG A-AAC-UACA G-AGCUA-GA GUA-----CG U-UC-GGGGC AGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -UCU-U--(- GAAA-)-GGG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGC- ---------- AA-GCAAA-U CCCGU-AAAC -CG-U-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- CA-AC-GCCC -GAA-G-UCA 3121 U-UAC-U-CC -AA-CUU--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-A-G G-AU-GC-CU A-AGGC-AGU GCU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nost.73102 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nostoc sp.. ACCESSION No information KEYWORDS No information. SOURCE Nostoc sp. ORGANISM Nostoc sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 258 a 226 c 312 g 198 t 3382 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .GGUG-G--C UAAUACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUNN--- ---)------ ---------| -----C--U- G--CCU---- 661 ----AGAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UA 721 GG-UA-GU-( GU-AAU-GG) -A-CUACC-U A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -RGA-C-UCC -(KRCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-NN --)GG-UCGU AAA--CCNN| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------CACA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-R-AG G-AA--UAAG ---------C 1141 -AUCGGCN-N ACUC.....( .......... .........) .......... |..AUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-CGGU- C-G-CAG-GU -G|-GC-AA- 1261 U-GU-AAG|U CUG---CUGU U-AAA-GA-G UC-UAG-C(- UC-A)A-CUA -GA-U-ACA- 1321 -AGCA-GUGG A-AAC-UACA U-AGCUA-GA GUA-----CG U-UC-GGGGC AGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-RGC -UU-R----- -U-------- 1681 -(ANN-NA)C C--------- ---------- ---------- --------CR -AGCCG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|N-CCU- G-GGGAGUAC 1801 CSC-C---(G CA.)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .G-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---SG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--UUU- 2281 AG--UUGCGC AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G--CG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-C-CG -GR--CRGAG GGC-AGG-C- AA-GCA-U(G 2881 -CGA)AUGC- ---------- AA-GCAAA-U CCCGU-AAAC -CG-N-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUN- AAUUC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nodl.73104 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nodularia sp.. ACCESSION No information KEYWORDS No information. SOURCE Nodularia sp. ORGANISM Nodularia sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS PCC 73104 = ATCC 29167 BASE COUNT 249 a 214 c 305 g 205 t 3403 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). ..UGU-G--C UAAUACC-GG 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--U- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UA 721 GG-UG-UG-( GU-AAA-AG) -C-GCACC-U A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(KACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU AAA--CCNN| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -AUCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. ...A-GGGU- C-G-CWG-GU -G|-CU-AU- 1261 G-UU-AAG|U CUG---CUGU U-AAA-GA-A CC-UAG-C(- UU-U)A-CUA -GG-N-NAA- 1321 -AGCA-GUGG A-AAC-UACW A-GGCUA-GA GUG-----CG U-UC-GGGGU WGA-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACW-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUA-- ---------- ---------- ---------G 1501 GCC--GC-WA CUGAYW-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--W 1621 AAC-K-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUN-UA)C C--------- ---------- ---------- --------CA -AGCCG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UG-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUA-CG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGU-A-G-C- UA-CAC-A(G 2881 -CAA)UGUG- ---------- AU-GCCAA-U CUCAG-AAAC -CG-U-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUR- AAUUC-GUU- UCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anbn.cylin 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Anabaena cylindrica". ACCESSION No information KEYWORDS No information. SOURCE "Anabaena cylindrica". ORGANISM "Anabaena cylindrica". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 279 a 235 c 318 g 218 t 3326 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......)C -GACU-G--C UAAUACC-GG 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UCGU AAA--CCNN| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-R-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC....( .......... .........) .......... |......... 1201 .......... ......AUGA -UU-GGGC|G UNAA-CGGU- CGC-CAG-GU -G|-GC-CA- 1261 U-GU-AAG|U CUG---CUGU U-AAA-GA-G UC-AUG-C(- UC-A)A-CAU -GA-U-AAA- 1321 -AGCA-GUGG A-AAC-UACA S-AGCUA-GA GUA-----CG U-UC-GGGGC AGA-G|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUA-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-NGC -UN-G----- -U-------- 1681 -(AUN-NN)C C--------- ---------- ---------- --------CN -AGCCN-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCU- N-GGRAGUAC 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)..CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ASA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -UUC-U--(- R-AA-)-GGA -G-AGAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGC-AGG-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAU-AAAC -CG-U-AGC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUU 3001 GC-AGG-(UC -AGC-AU)-A CUG-CAGUR- AAUUC-GUU- CCC-NG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.3 GLOEOTHECE_GLOEOCAPSA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.3 GLOEOTHECE_GLOEOCAPSA_GROUP. ORGANISM 2.11.1.3 GLOEOTHECE_GLOEOCAPSA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plrc.7516 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pleurocapsa sp.. ACCESSION No information KEYWORDS No information. SOURCE Pleurocapsa sp. ORGANISM Pleurocapsa sp. REFERENCE 1 AUTHORS Nelissen,B., Van de Peer,Y., Wilmotte,A. and De Wachter,R. TITLE An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences JOURNAL Mol. Biol. Evol. 12 (6), 1166-1173 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78681|g1109767 BASE COUNT 383 a 322 c 449 g 307 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 -------UUA -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUCG---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CA 481 AU-AU----- ---------- ---------- ---------- ---GGC-(-- --------GA 541 GA-------- -)-GCU---- ---------- ----GAAAU- ---UA----- ---------- 601 --(------- ---UUU---- ---)------ ---------| --------A- G--CCU---- 661 ----UGAG-- AGG---A-|G CUCGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-GU-( GU-AAU-GG) -A-CUACC-A A|-GGC-AG- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--UU-UG --)GG-UUGU AAA--CCUC| UUUU-AU-UA 1021 --AG-GAA-- GA-A------ ---------( ------UCAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-A-AA G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-UC- 1261 A-UC-AAG|U CUG---CUGU U-AAA-GA-C AG-AAG-C(- UC-A)A-CUU -CU-G-AGC- 1321 -AGCA-GUGG A-AAC-UGGU G-AGCUA-GA GUA-----UG G-UA-GGGGU UGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCAACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----UUA- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GC-GU-UGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---CGAG--- -AA----CUG 1981 -AAC-C--(- UAAU-)-AGU -U-CAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUC-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGG-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CUCAUCAAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CC---- ---------- ---------- -----(---- AAUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -UUGAGGG-G G-AU-G--CG A-AGGC-AGG GCU-GG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mxsr.7312 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myxosarcina sp.. ACCESSION No information KEYWORDS No information. SOURCE Myxosarcina sp. ORGANISM Myxosarcina sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS PCC 7312 = ATCC 29377 BASE COUNT 328 a 261 c 378 g 244 t 3165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGU-A -UGC-GU--A ACAC-AUNCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AC (--UU----- ---------- ---------- 241 --------A- -)GU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCA-G C-CUUC---A -GGAU-N-GG 421 -GAU-AA-CA G--------- ------AG-- G(-GAAA-)C -CGCU-G--C UAAUACC-CN 481 AU-AA----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ---AAAAA-- ---GC----- ---------- 601 --(------- ---AAU---- ---)------ ---------| -----G--U- G--CCU---- 661 ----GAAG-- AAG---A-|G CUCGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AG- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (GUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--UU-UG --)GG-UUGU AAA--CCNN| UNUU-AU-CN 1021 --NG-GAA-- GA-A------ ---------( ------GAAA G--------) ---------- 1081 ---------- ---------- U-GA-NGGU- A-CUU-G-AA G-AA--UCAG ---------C 1141 -AUUGGCN-N NCU......( .......... ......A-A) U-A-C-GGAG |-NAUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GCGU- CNG-CAG-GU -G|-GU-GG- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GA-C AG-AAG-C(- UC-A)A-CUU -CU-G-AGA- 1321 -GGCA-GUGG A-AAC-UGGG C-AACUA-GA GUA-----CG G-UA-GGGGU UGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -U-AACUG-- ---------- ---------- ---------G 1501 GCC--GU-NA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----UUA- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GC-GU-UGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUN C|C|G-CCN- N-GGGAGUAC 1801 GCN-N---(G CAA)---G-U .......... .......... .......... .........N 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-C- -(AN---A-C G)--CGAAGA 1921 A-CCUUA-CC A.G-AC-UUG ACA-UA|--- ---------U ---CGAG--- -AA-----GA 1981 -G-A-G--(- CCUA-)-AUA -C-UNUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGG-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-NCGAA-U CUCAGCAAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUN- AAUUC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plrc.7321 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pleurocapsa sp.. ACCESSION No information KEYWORDS No information. SOURCE Pleurocapsa sp. ORGANISM Pleurocapsa sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 243 a 199 c 276 g 197 t 3461 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GUG-GCGG- 361 -A-NG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-N C-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------GG-- A(-GAAA-)U -CGCU-N--C UHAUACC-CN 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------CU 541 CG-------- -)-GGU---- ---------- ----NAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CCU---- 661 ----GGAG-- AGG---A-|W CUHGC----- -GU|----CC N--AUUA-G- UUA-G---UU 721 NG-UN-GG-( GU-HAA-NG) -C-CUACC-A W|-GGC-GG- CNA------- -----UC-GG 781 H-AG-C-UN| -G-UCU--(G -ANA)-GGAU ----GA-G-- CAG-C|H-AC -MCUGG-G-A 841 (CMGA-GA-C MCG)--GCCC -NNN-C-UCC -(NNCG)--G GAG-UC-AG- C-A---GU-G 901 GGN-AAUUUU C-CGCAAU-- NG-GC-(GAA A)-GCC-UNA CGGA|-GCAA UACC-GC-NU 961 N-A-GG-G-A G-GAA--G-G CU(--NH-UN --)GG-UUGU AAA--CCUN| WNUU-UU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AA G-AA--UAAG ---------C 1141 -AUCGGCU-N AC.......( .......... ....GUW-A) U-A-C-GGAG |-UAUG-C-- 1201 UAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UNAA--CGU- CCG-CAG-GU -G|-GC-UG- 1261 U-AC-AAG|U CUG---CUNU U-AAA-GA-C AG-AAG-C(- UH-A)A-CUU -CU-U-GCW- 1321 -AGCG-GUNG A-AAC-UHUU C-AGCNN-NA GUA-----CG G-UA-GGGGU UGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UHAACUH-- ---------- ---------- ---------G 1501 GCC--GU-HA CUNACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UNUA-G UC----UUA- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GC-GU-UNC -UU-N----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUNUU C|C|G-CCU- H-GGGAGUA. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......UU- 2281 AG--UUGC-U AG-NA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-ANA-GG-A G-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GNGG-A-AG 2761 G-UG-GCG-A UG-ACG--UH -W-AGUC-AU CAU-U-CC-C CUUAC-G-UU -CU--NGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -GA--CAAAG GGC-A-G-C- AA-GCG-A(G 2881 -HHA)UCGU- ---------- AA-GCGAA-U CUCAGHAAAC -CC-D-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- W)-GCCUWCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGH-AU)-A CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sncy.6308 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis sp. ORGANISM Synechocystis sp. REFERENCE 1 AUTHORS and Pace,N.R. Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. TITLE chloroplasts Evolutionary relationships among cyanobacteria and green JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information BASE COUNT 292 a 216 c 327 g 214 t 3327 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGG---AAC -GC-GUGAG- A-A--UCU-G C-NNNU---A -GGUC-G-GG 421 -NAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-GA----- ---------- ---------- ---------- ---GCU-(-- --------GA 541 GA-------- -)-AGU---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-UA-GU-( GU-AAA-GG) -A-CUACY-A U|-GGC-CA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCY -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--NU-UG --)GG-UUGU AAA--CCUC| NAAA-CU-UA 1021 --GG-GAA-- GA-A------ ---------( ------AAAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AU ---A--UAAG ---------C 1141 -AUCGGCU.. .........( .......... .........) .......... |..AUG-C-- 1201 NAG-CGUUAU YC-GNAAUCA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GC-AU- 1261 U-UC-AAG|U CUG---CUGU C-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-NUA- 1321 -GGCG-GUGG A-AAC-UGAA A-AGCUN-GA GUA-----UA G-UA-GGGGU AGA-G|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCA--UA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----UUA- G-CG-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGU -CU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GACAG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ..UC-U--(- GAAA-)-GGA -G-AGAG--- UG-------- ---CC----- --(UW----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CAC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UR|G-CUN-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-GW-CU-C- U-AGG-GA-G A-CC-G-CCG --GG(-NN-N NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGA-G-G-C- GA-AAC-U(G 2881 -CGA)AGUG- ---------- GA-GCGAA-U CCUGUCAAAC -CC-A-GCC- CCAGUUCAGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAYUC-SUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prcl.didem 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prochloron didemni.. ACCESSION No information KEYWORDS No information. SOURCE Prochloron didemni. ORGANISM Prochloron didemni. REFERENCE 1 AUTHORS Urbach,E., Robertson,D.L. and Chisholm,S.W. TITLE Multiple evolutionary origins of Prochlorophytes within the JOURNAL Nature 355, 267-270 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63141 legacy_attribute= Seewaldt..(82) Nature 295:618 geog_source= Kamori Channel, Koror, Palau, W. Caroline Islands biol_source= reef flats BASE COUNT 381 a 314 c 433 g 275 t 2973 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 -------GAU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-A C-CUCA---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------CA-- G(-GAAA-)C -UGGU-G--C UAAUACC-CG 481 AU-AA----- ---------- ---------- ---------- ---GCU-(-- --------GA 541 AA-------- -)-AGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCG---- 661 ----AGAG-- AGG---A-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-AA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A A-GAA--G-G CU(--UU-UG --)GG-UUGU AAA--CCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAAU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--AAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- CCG-CAG-GU -G|-GC-GA- 1261 A-UA-AAG|U CUG---CUGU U-AAA-GA-C CG-GGG-C(- UA-A)A-CUC -CG-G-AAA- 1321 -GGCA-GUGG A-AAC-UGAU U-AGCUA-GA GUA-----CG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUACUA-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----UUA- G-CG-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -AGC-G--(- GAAA-)-CGU -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| UGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AA-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CUCAUCAAAC -CC-A-GCC- ACAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- CU-AC-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCG--- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGAG-U-A --AC-AA-GG A-UCAC-CUC CUN....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mccl.7420 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcoleus sp.. ACCESSION No information KEYWORDS No information. SOURCE Microcoleus sp. ORGANISM Microcoleus sp. REFERENCE 1 AUTHORS Nelissen,B., Van de Peer,Y., Wilmotte,A. and De Wachter,R. TITLE An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences JOURNAL Mol. Biol. Evol. 12 (6), 1166-1173 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70770|g1109766 BASE COUNT 356 a 349 c 476 g 279 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUG---G -GGUC-G-GG 421 -GAC-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-AA----- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GGU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCC---- 661 ----UAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-AG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA GACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GCUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--RCAGC CGCGGUA-A) U-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-GA- 1261 U-UC-AAG|U CUG---CUGU C-AAA-GC-A CG-GGG-C(- UU-A)A-CUC -CG-U-UAA- 1321 -GGCA-GUGG A-AAC-UGAA U-AGCUA-GA GUG-----CC G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 ACG--GC-AA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----CCC 1981 -CGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CU -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAGAG GGC-A-G-C- UA-ACC-U(G 2881 -CGA)AGGC- ---------- AA-GCUAA-U CCCAG-AAAC -UC-G-GCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGA-AU)-A CGG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCC--- ---------- ---------- -----(---- -UCCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-AC-GC-CG A-AGGC-AGG GUU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.corall 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria corallinae" str. CJ1 SAG8.92. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria corallinae" str. CJ1 SAG8.92. ORGANISM "Oscillatoria corallinae". REFERENCE 1 AUTHORS Nelissen,B.J.M., De Baere,R., Wilmotte,A. and De Wachter,R. TITLE Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis JOURNAL J. Mol. Evol. 42, 194-200 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84812 isolate_name= CJ1 SAG8.92 BASE COUNT 358 a 366 c 476 g 264 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--UCU-G C-CUUC---A -GGUC-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------CA 541 AG-------- -)-GGU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UUGA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA GACC-GC-GU 961 G-G-GG-G-A G-GAA--A-G CC(--UU-UG --)GG-UCGU AAA--CCCC| UUUU-GU-CA 1021 --GG-GAA-- GA-A------ ---------( ------ACCC U--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-CG- 1261 A-GU-AAG|U CUG---CUGU C-AAA-GA-C CA-CGG-C(- UC-A)A-CUG -UG-G-GCA- 1321 -GGCA-GUGG A-AAC-UGCG C-GGCUA-GA GUG-----CG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACA-CUC AC-A------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--GA-CU-- -------A|G -GU-GU-AGC -AC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCUG-UAU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GUCUC C|C|G-CCU- G-GGGAGUAC 1801 GCG-C---(G CAA)---G-C GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAACA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -CCG-G--(- GAAA-)-CCG -G-AGAG--- UG-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- UG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGA-G-GG -GA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCGC-AAAC -CC-C-GCC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CC -AA-CCC--- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-G G-AC-GC-CG A-AGGC-AGG GCU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Glcp.73106 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gloeocapsa sp.. ACCESSION No information KEYWORDS No information. SOURCE Gloeocapsa sp. ORGANISM Gloeocapsa sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 245 a 201 c 277 g 182 t 3471 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .....CC-NN 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----NAAA-- ---AA----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAAG-- AGG---G-|G CCUNN----- -NN|----NU N--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-NAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UNU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UWCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GNA--G-G UC(--UNAUA --)GA-UUGU AAA--CCNN| UUUU-UU-CG 1021 --GG-AAA-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA G-AA--UAAG ---------C 1141 -AUCGGCU-N AC.......( .......... .........) .......... |......... 1201 .......... .......... ..U-GGGC|G UNAA-CGGU- CU--CNG-GU -G|-GU-AC- 1261 U-AC-AAG|U CUA---CUGU C-AAA-GA-C CA-GAG-C(- UN-N)A-CUC -UN-G-NCA- 1321 -GGCG-GUGG A-AAC-UGUA A-GACUA-GA GAC-----CG G-UA-GGGGU AGA-G|GGNA 1381 UU-CCCAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CA -AGCUG-UGU 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCU- G-GGGAGUNC 1801 GC......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-UH-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACN AUGGU-A-GG -GA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAUCAAAC -CC-U-NCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drm.7437 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermocarpa sp.. ACCESSION No information KEYWORDS No information. SOURCE Dermocarpa sp. ORGANISM Dermocarpa sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS PCC 7437 = ATCC 29371 BASE COUNT 277 a 246 c 353 g 211 t 3289 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------AU (--CU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUC---A -GGAC---GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACN--N 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- -----AAA-- ---GG----- ---------- 601 --(------- ---UUAU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAG-AG) -C-GCACN-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--CCNN -GNC-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--NN-UG --)GG-UUGU AAA--CCNN| NUUU-CU-CR 1021 --RG-GAR-- GANA------ ---------( -----GGUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -AUCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. UUAA-GCGU- C-G-CAG-GC -G|-GU-UU- 1261 C-AC-AAG|U CUG---CUGU C-AAA-GA-C UG-GAG-C(- UU--)A-CUC -CG-G-GCA- 1321 -GGCG-GUGG A-AAC-UGUG A-AACUA-GA GUA-----CG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--GN-NA CUGACG-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CNA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GN-NGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCAG-UGC 1741 CG--CA---- --CG-(UNA- ---C)G-CG- UUAA-GUAUC C|G|G-NNU- G-GGGAGUAC 1801 GCA-G---(C CNA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)......GA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCA 1981 -CUA-G--(- GAAA-)-CUA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-----NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-U AG-CA----- ---------- ---------- ---G(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CU|- 2701 G-CA-CU-C- U-AGG-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C NUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAAAG GGC-A-G-C- AA-GCU-C(G 2881 -CAA)GAGU- ---------- AA-GCGAA-U CUCAC-AAAC -CC-U-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGNN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spli.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirulina sp.. ACCESSION No information KEYWORDS No information. SOURCE Spirulina sp. ORGANISM Spirulina sp. REFERENCE 1 AUTHORS Nelissen,B., Wilmotte,A., Neefs,J.-M. and De Wachter,R. TITLE Phylogenetic relationships among filamentous helical cyanobacteria investigated on the basis of 16S ribosomal RNA gene sequence analysis JOURNAL Syst. Appl. Microbiol. 17, 206-210 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75044|g575420 (bases 1 to 1457) PCC 6313 = ATCC 29542 BASE COUNT 378 a 329 c 458 g 292 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-U---A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--UCU-G G-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCAA UACC-GC-GU 961 G-C-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--CCGC| UUUU-CU-UA 1021 --GG-GAA-- GA-A------ ---------( -------AC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- CCG-UAG-GU -G|-GU-UC- 1261 A-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-CAG-C(- UC-A)A-CUG -CA-U-AUA- 1321 -GGCA-GUGG A-AAC-UGUU G-AACUA-GA GUA-----UG G-UA-GGGGU AGG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCC-- -GCUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCA- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CGCG--- -AA----UCU 1981 -CUU-G--(- GAAA-)-CAG -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CUCAUCAAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- CA-AC-AUCC -GAA-G-UCG 3121 U-UAC-U-CC -AA-CUG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-G G-GC-GC-CG A-AGGU-GGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ar.sp7345 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrospira sp.. ACCESSION No information KEYWORDS No information. SOURCE Arthrospira sp. ORGANISM Arthrospira sp. REFERENCE 1 AUTHORS Nelissen,B., Wilmotte,A., Neefs,J.-M. and De Wachter,R. TITLE Phylogenetic relationships among filamentous helical cyanobacteria investigated on the basis of 16S ribosomal RNA gene sequence analysis JOURNAL Syst. Appl. Microbiol. 17, 206-210 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75045|g547607 (bases 1 to 1457) NB: In the publication this accession number was incorrectly published under the Spirulina PCC 6313 sequence. The correct sequence can be found under X75044. BASE COUNT 378 a 329 c 458 g 292 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-U---A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--UCU-G G-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCAA UACC-GC-GU 961 G-C-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--CCGC| UUUU-CU-UA 1021 --GG-GAA-- GA-A------ ---------( -------AC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- CCG-UAG-GU -G|-GU-UC- 1261 A-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-CAG-C(- UC-A)A-CUG -CA-U-AUA- 1321 -GGCA-GUGG A-AAC-UGUU G-AACUA-GA GUA-----UG G-UA-GGGGU AGG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCC-- -GCUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCA- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CGCG--- -AA----UCU 1981 -CUU-G--(- GAAA-)-CAG -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CUCAUCAAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- CA-AC-AUCC -GAA-G-UCG 3121 U-UAC-U-CC -AA-CUG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-G G-GC-GC-CG A-AGGU-GGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spli.6313 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirulina sp.. ACCESSION No information KEYWORDS No information. SOURCE Spirulina sp. ORGANISM Spirulina sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS PCC 6313 = ATCC 29542 BASE COUNT 228 a 210 c 274 g 176 t 3488 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ....GUGAG- A-A--UCU-G C-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CN 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UNNN--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CWG-C|C-AC -WCUGG-G-A 841 (CUGA-GA-Y WCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-WG- C-W---GU-G 901 GGG-AAUUUU C-CGCWAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCWA UACG-CG-NN 961 G-C-GG-G-A G-GAA--G-G CC(--CU-NN --)GG-UCGU AAA--CCGC| NNUU-CU-UA 1021 --GG-GAA-- GA-------- ---------( -------ACU ---------) ---------- 1081 ---------- ---------- --NA-CGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -CUCGGCU-N ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|...A 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCAG- 1441 -G-U-GC(-G AA-A)GCCC- -NCUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACR-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(ANN-NA)C C--------- ---------- ---------- --------CG -AGCUG-UGC 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUUUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |...C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---GG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-U-GG -GA--CAAAG GGC-A-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GC-AA-U CUCAUCAAAC -CC-A-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AANUC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Glth.memb2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gloeothece membranacea.. ACCESSION No information KEYWORDS No information. SOURCE Gloeothece membranacea. ORGANISM Gloeothece membranacea. REFERENCE 1 AUTHORS Nelissen,B., Van de Peer,Y., Wilmotte,A. and De Wachter,R. TITLE An early origin of plastids within the cyanobacterial divergence is suggested by evolutionary trees based on complete 16S rRNA sequences JOURNAL Mol. Biol. Evol. 12 (6), 1166-1173 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78680|g1109755 BASE COUNT 376 a 340 c 472 g 272 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GA----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA G--------- ------CG-- G(-GAAA-)C -GGCU-G--C UAAUACC-CG 481 AU-AG----- ---------- ---------- ---------- ---GCU-(-- --------GA 541 AA-------- -)-AGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-GG 1021 --GG-GAA-- GA-A------ ---------( ------GUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-C-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GC-UA- 1261 U-UC-AAG|U CUG---CUGU C-AAA-GC-A UG-GAG-C(- UU-A)A-CUC -CA-U-AGA- 1321 -GGCA-GUGG A-AAC-UGAA A-GGCUA-GA GGC-----CG G-UA-GGGGU AGU-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGC- -ACUACUG-- ---------- ---------- ---------G 1501 GCA--GG-AC CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--GA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -AGCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------U ---GGCG--- -AA----UCA 1981 -GGG-G--(- GAAA-)-CCU -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-CA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAGAG GGC-A-G-C- AA-ACU-C(G 2881 -CAA)GAGC- ---------- AA-GCGAA-U CUCAUCAAAC -UC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UG-- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAGGG-G G-AU-GC-CG A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Glth.membr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gloeothece membranacea. ACCESSION No information KEYWORDS No information. SOURCE Gloeothece membranacea. ORGANISM Gloeothece membranacea. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS Former RDP Sids: Glth.7501 NB: former name Gloeothece sp. BASE COUNT 245 a 227 c 312 g 198 t 3394 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........C UAAUACC-CN 481 AU-AG----- ---------- ---------- ---------- ---GCU-(-- --------GA 541 AA-------- -)-AGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----NAAG-- AGG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACN-A A|-GGC-GA- CGA------- -----UC-AG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGN-N-N 841 (CUGA-GA-C WCG)--GCCN -NGW-C-UCC -(UACG)--G GAG-GC-WG- C-A---GU-G 901 GGG-AAUUUU C-CGCWAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCWA CGCN-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UUGU WAA--CCUN| UUUU-CU-NG 1021 --GG-GAA-- GA-A------ ---------( ------GUWA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-N-AG G-AA--UAAG ---------C 1141 -WUCGGCU-A NCUC.....( .......... .........) .......... |.GAUG-Y-- 1201 WAG-CG-UAU C---KA--UA -UU-GGGC|G UA.....GU- C-G-CAG-GU -G|-GC-UA- 1261 U-UC-AAG|U CUG---CUGU C-AAA-GC-A UG-GAG-C(- UU-A)A-CUC -CA-U-UGA- 1321 -GGCA-GUGG W-AAC-UGAA A-GGCUU-GA GGC-----CU G-UA-GGGGU WGU-G|GGUA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGC- -ACUACUG-- ---------- ---------- ---------G 1501 GCA--GG-AC CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-R-AUGG A--GA-CU-- -------A|G -GC-GU-AGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CA -AGCUG-UGC 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUCUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(A CA.)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ..GG-G--(- GAAA-)-CCU -G--GAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- NG-------- ----AG...| CGC-CA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UUA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UWAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UM ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UD-DGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C NNUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUM--CUACC AUGGU-Y-GG -GA--CAGAG GGC-A-G-C- AA-ACU-C(G 2881 -CAA)GAGC- ---------- AA-GCGAA-U CUCAUCCAAC -UC-G-GCC- UCCGUUCCGA 2941 U-UGCAGGC- (UGCCAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(WN -CGC-AU)-A CGG-CGGUN- AAUUC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sncy.6803A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis sp. ORGANISM Synechocystis sp. REFERENCE 1 AUTHORS Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto ,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki ,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., TITLE cyanobacterium Synechocystis sp. strain strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions Sequence analysis of the genome of the unicellular JOURNAL DNA Res. 3 (3), 109-136 (1996) STANDARD No information REFERENCE 2 AUTHORS Kaneko,T., Tanaka,A., Sato,S., Kotani,H., Sazuka,T., Miyajima,N., Sugiura,M. and Tabata,S. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64to 920f the genome JOURNAL DNA Res. 2 (4), 153-166 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AB001339 (bases 2452187 to 2453675) complement BASE COUNT 384 a 335 c 468 g 302 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--CCU-A C-CUUC---A -GAAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--UCU---- 661 ----GAAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A U|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--CU-UG --)GA-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UA- 1261 U-GC-AAG|U CUG---CCGU U-AAA-GA-A UG-GAG-C(- UU-A)A-CUC -CA-U-AGG- 1321 -AGCG-GUGG A-AAC-UGCA A-GACUA-GA GUA-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -UGC-G--(- GAAA-)-CGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CCA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAACG GGC-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAUCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CC---- ---------- ---------- -----(---- --UUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAGGA-G G-GC-GC-CG A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sncy.6803 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis sp. ORGANISM Synechocystis sp. REFERENCE 1 AUTHORS Kaneko,T., Tanaka,A., Sato,S., Kotani,H., Sazuka,T., Miyajima ,N., Sugiura,M. and Tabata,S. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. sequence features in the 1Mb region from map positions 64% to 92% of 1 (bases 1 to 146271) JOURNAL DNA Res. 2, 153-166 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D64000|g1001484 (bases 59459 to 60947) complement BASE COUNT 384 a 335 c 468 g 302 t 2887 others ORIGIN 1 .......... .......... .......... ...ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--CCU-A C-CUUC---A -GAAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--UCU---- 661 ----GAAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A U|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--CU-UG --)GA-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UA- 1261 U-GC-AAG|U CUG---CCGU U-AAA-GA-A UG-GAG-C(- UU-A)A-CUC -CA-U-AGG- 1321 -AGCG-GUGG A-AAC-UGCA A-GACUA-GA GUA-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -UGC-G--(- GAAA-)-CGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CCA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAACG GGC-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAUCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CC---- ---------- ---------- -----(---- --UUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAGGA-G G-GC-GC-CG A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sncy.6803B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis sp. ORGANISM Synechocystis sp. REFERENCE 1 AUTHORS Kaneko,T., Sato,S., Kotani,H., Tanaka,A., Asamizu,E., Nakamura,Y., Miyajima,N., Hirosawa,M., Sugiura,M., Sasamoto ,S., Kimura,T., Hosouchi,T., Matsuno,A., Muraki,A., Nakazaki ,N., Naruo,K., Okumura,S., Shimpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M. and Tabata,S. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions JOURNAL DNA Res. 3 (3), 109-136 (1996) STANDARD No information REFERENCE 2 AUTHORS Kaneko,T., Tanaka,A., Sato,S., Kotani,H., Sazuka,T., Miyajima,N., Sugiura,M. and Tabata,S. TITLE Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. I. Sequence features in the 1 Mb region from map positions 64to 920f the genome JOURNAL DNA Res. 2 (4), 153-166 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AB001339 (bases 3325053 to 3326541) BASE COUNT 384 a 335 c 468 g 302 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- A-A--CCU-A C-CUUC---A -GAAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--UCU---- 661 ----GAAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A U|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--CU-UG --)GA-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UA- 1261 U-GC-AAG|U CUG---CCGU U-AAA-GA-A UG-GAG-C(- UU-A)A-CUC -CA-U-AGG- 1321 -AGCG-GUGG A-AAC-UGCA A-GACUA-GA GUA-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -UGC-G--(- GAAA-)-CGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CCA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAACG GGC-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAUCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CC---- ---------- ---------- -----(---- --UUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAGGA-G G-GC-GC-CG A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sncy.6906 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechocystis sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechocystis sp. ORGANISM Synechocystis sp. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 260 a 223 c 310 g 196 t 3387 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU----AC -AC-GUGAG- A-A--CGN-A C-CWUU---A -GGAC-G-GG 421 -GAY-AA-CA G--------- ------UU-- G(-SAAA-)C -GACU-G--C UAAUACN--N 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----NAAA-- ---GG----- ---------- 601 --(------- ---AUNN--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUCA-G- CUA-G---UU 721 GG-GG-GU-( GU-AAG-AG) -A-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-V-A 841 (CUGA-GA-C ACG)--GCCM -MGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-MAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--AU-UG --)GA-UUGU AWW--CCNN| UUUU-AU-UA 1021 --GG-GAA-- GA-A------ ---------( ------GCUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -AACGGCN-N ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....UU- 1261 U-UC-AAG|U CUG---CCGU U-AAA-GA-A UG-GAG-C(- NN-N)A-CUC -CA-U-MGG- 1321 -GGCG-GUGG A-AAC-UGUG A-GACUA-GA GUA-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UCAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--NA-AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-A-AUGN A--UA-CU-- -------A|G -GC-GU-NGC -UN-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -AGCCG-UGC 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCG-C---(G CUA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| ..A-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUR-- UCG-UCA|-G C-U---HG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAACG GGC-A-G-C- CA-AUC-C(G 2881 -CGA)GGAC- ---------- GA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -NGA-AU)-A CUG-CGGUN- AAUUC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.sp139 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis sp. str. AWT139. ACCESSION No information KEYWORDS No information. SOURCE Microcystis sp. str. AWT139. ORGANISM Microcystis sp. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40331|g1150960 isolate_name= AWT139 BASE COUNT 369 a 349 c 464 g 292 t 2902 others ORIGIN 1 .......... UGCUGGAAUU CGGCUUCGCG GAUCCGAGCU CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---AC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CCGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GC-(-G UGAAA)-UGC -GU-AGAU-A UU-CGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -AAUACUG-- ---------- ---------- ---------G 1501 GCUC-AU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- C-CC-CG--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGG -UU-G----- -U-------- 1681 -(AUC-UA)C C--------- ---------- ---------- --------CG -AGCCG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|C-CCU- G-GGGAGUAC 1801 GCA-C---(A CAA)---G-U GU-GAAACUC -ACA-GGAAU UG-UGGGG-G -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUUA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-C |GUU--CUU- 2281 AG--UUUC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -UGC-AU)-G CGG-CGGUG- AGUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC ---------- ---------- ---------- -----(-AAC ACCGAAA--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GGGG-G G-AU-GC-CU A-AGG--AGG GCU-AG-UG- ACU-UGGG-U 3301 G---AAGU-- GUAA-AGUAA .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.aerug6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis aeruginosa.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40339|g1150968 BASE COUNT 388 a 357 c 460 g 300 t 2871 others ORIGIN 1 .......... UGCUGGAAUU CGGCUUCGCG GAUCCGAGCU CAAAUU(U-G A)U-CUU|-G 61 GCUCAA-GAU -GAAU-AC-- AUGC-GGC-G -UUC-CU--A AAAA-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------GG -)GA-UUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- UAAU-UGGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-A- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GCC( CCA--GUAGA CGCGGCA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAC-CGUUAU CC-CGAAUUA -UU-GGGC|G UAAA-GCGU- CCC-CAG-GU -G|-GA-CA- 1261 G-AC-AAG|U CUG---UCGA C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GCGG C-AAC-UCGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GCAA 1381 UU-CCCAGU- CUC-GC-(-G UGAAA)-UGU CGU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-CC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--AA-CU-- -------A|G -AC-GU-GUC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AACCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)A-CG- UUAA-GUAUC C|C|C-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GUAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-ACU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GCU- CCC-GGG-CC UUGUA----C 3061 ACACCUCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GUA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGUGG-G-G G-AU-GC-CU A-AGGU-AGG GCU-AG-UG- ACU-GGUG-U 3301 G----AGUC- GUAA-CAAGG UAGCC-GUGC G(GUA-A)AG UGUGAA--UG GCAUAUC... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.wesnb2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis wesenbergii.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis wesenbergii. ORGANISM Microcystis wesenbergii. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40334|g1150963 BASE COUNT 375 a 352 c 472 g 283 t 2894 others ORIGIN 1 .......... .......... ....AGUUAA ACGCGCCAGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GGAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAC ---------C 1141 -CUCGGCU-A ACUCC-CUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CCGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A-CCA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGGG-G --AU-GC-CU A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUGC A(GUC-U)GA GCGA...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.aerug5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis aeruginosa.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40338|g1150967 BASE COUNT 380 a 345 c 475 g 285 t 2891 others ORIGIN 1 .......... .......... ..AGUUAAAA CGACGCCAGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---AC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-A-- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CCGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAAGGGAAU UG-ACGGG-G -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G G-AU-GC-CU A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUGC A(GUC-U)AG AGCGAU.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.wesnbr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis wesenbergii.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis wesenbergii. ORGANISM Microcystis wesenbergii. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40333|g1150962 BASE COUNT 378 a 356 c 475 g 291 t 2876 others ORIGIN 1 .......... UGCUGGAAUU CGGCUUCGCG GAUCCGAGCU CGAGUU(U-G A)U-CCU|-G 61 GCGUAG-GAU -GAAG-GC-- UCGC-GCG-U -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGUG-ACGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAA--)C -GACU-G--C UCAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CUGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA--CG(-G UGAAA)-U-C -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --UC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-AA-CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGGG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GGU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCC-GA-ACA |---C|A--G 2161 AU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGGG-G --AU-GA-CU A-AGGC-AGA GCU-UG-UG- ACU-GGGG-U 3301 G---AAGUC- GAAA-CAAGG UAACC-CUAC A(GUC-U)AG AGCGAG--CC GCC....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.viridi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis viridis.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis viridis. ORGANISM Microcystis viridis. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40332|g1150961 BASE COUNT 381 a 355 c 480 g 293 t 2867 others ORIGIN 1 .......... ...UGGAAUU CGGCUUCGCG GAUCCGAGCU CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- CGCU-GCG-C -GUC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GG-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CGCGGCU-A ACUCC-GUG( CCA-GGCAGC CGCGGUAGA) UGAGCAGGGG |-GAGG-C-A 1201 AAA-CGUUAU CC-GGAAUUA -UU-GG-U|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CUGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GUAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA--CGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)G-CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACGGG-G G-AU-GC-CU A-AGGC-AGG GCU-AG-UU- ACU-GGUC-U 3301 G---ACAAU- GUAA-CAAGG UAACC-CUGC A(GUC-U)AG AUCGAA--GC CGAAUUC... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.aerug3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis aeruginosa str. NIES89. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa str. NIES89. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS Neilan,B.A., Cox,P.T., Hawkins,P.R. and Goodman,A.E. TITLE 16S ribosomal RNA gene sequence and phylogeny of toxic Microcystis sp. (cyanobacteria) JOURNAL DNA Seq. 4, 333-337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z28700|g415656 isolate_name= NIES89 BASE COUNT 355 a 331 c 455 g 269 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CUGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UAGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GC-(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAU -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGGG-G G-AU-GC-CU A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.aerug7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis aeruginosa.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40340|g1150969 BASE COUNT 372 a 357 c 486 g 292 t 2869 others ORIGIN 1 .......... UGCUGGAAUU CGGCUUCGCG GAUCCGAGCU CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAAG-- AAG---A-|G CUUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CCGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -CCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-AU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAC-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GC--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GGC -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UUC 1741 CG--AA---- --GA-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGGGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGUAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGGGG-AGU A-U-GU-GGU -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAGUAC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UU|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GAG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGG-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAAAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGAA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAAGGAGG 3181 GGGAUGCCUA A--------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGCAGGG-G G-AU-GC-CU A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUGC A(GUC-U).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.aerug4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis aeruginosa.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis aeruginosa. ORGANISM Microcystis aeruginosa. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40337|g1150966 NB: 46 bp duplication at 1250n removed: atcccagcaaacccggcctcagttcagattgcaggctgcaactcgc BASE COUNT 360 a 348 c 463 g 291 t 2914 others ORIGIN 1 .......... UGCUGGAAUU CGGCUUCGCG GAUCCGAGCU CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- A-A--UCU-A A-CUUC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AG-A------ -)-GGU---- ---------- ----GAAA-- ---CC----- ---------- 601 --(------- ---UAAU--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GGAG-- AAG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AG-)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GUUC ---------) ---------- 1081 ---------- ---------- U-AA-CGGU- U-CUU-G-AG G-AA--UCAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CCCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-GU-CA- 1261 G-CC-AAG|U CUG---CCGU C-AAA-UC-A GG-UUG-C(- UU-A)A-CGA -CC-U-AAA- 1321 -GGCG-GUGG A-AAC-UGGC A-GACUA-GA GAG-----CA G-UA-GGGGU AGC-A|GGAA 1381 UU-CCCAGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-UCGG- 1441 -U-G-GC(-G AA-A)GCGU- -GCUACUG-- ---------- ---------- ---------G 1501 GCU--GU-CU CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- UU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGGCG-GGC 1741 CA--AA---- --GA-(UAA- ---C)G-CG- UUAU-GUAUC C|C|C-CCU- G-GAGAGUAC 1801 GCA-C---(G CAA)---G-U UU-GAAUCUC -AAA-GGUAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UGG-U--(- GAAA-)-GCU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-CA-ACA |---C|A--G 2161 AU-GG-UGUA UA|G-CUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAU -GU)-CCCGC AA-------- AGAG-C--GC ACCCC-UC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|A 2701 C-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGGGA-AG 2761 G-UG-GUG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 G-ACA-CA-C GUA--CUACA GUCGU-C-GG -AA--CAAAA GGC-A-G-U- CA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGUA-U CCCAGCAAAC -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AC-GCCC -GAA-G-UCA 3121 U-UAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGGG-G G-AU-GC-CU A-AGGC-AGG GCU-AG-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.4 PLECTONEMA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.4 PLECTONEMA_GROUP. ORGANISM 2.11.1.4 PLECTONEMA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP606 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP606.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP606. ORGANISM clone JAP606. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09826|g495559 BASE COUNT 72 a 45 c 76 g 62 t 4121 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUUAUUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGAUA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- A-A--UCU-A C-CUUU---A -GGAC-G-GG 421 -GAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUACC-CG 481 AU-AUG---- ---------- ---------- ---------- ---CUG-(-- ---------U 541 GG-------- -)-AGU---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---AAUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAAG-- AUG---A-|U CUUGC----- -GU|----CU G--AUUA-G- CUA-G---AU 721 AG-UG-UG-( GU-AAU-GG) -C-GCACU-A U|GGGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AG-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chms.sglbs 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chamaesiphon subglobosus. ACCESSION No information KEYWORDS No information. SOURCE Chamaesiphon subglobosus. ORGANISM Chamaesiphon subglobosus. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS Former RDP Sids: Chms.7430 NB: former name Chamaesiphon sp. BASE COUNT 364 a 319 c 439 g 285 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUUC---A -GGAU-G-GG 421 -GAC-AA-CA A--------- ------UU-- G(-GAAA-)C -GAUU-G--C UAAUACC-CG 481 AU-AU----- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GGAG-- AUG---A-|G CUCGC----- -GU|----CA G--AUUA-G- CUA-G---AU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A U|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-G-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CU(--CU-UG --)GG-UCGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------CACA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UU- 1261 U-GU-AAG|U CUG---UGGU U-AAA-GC-G UG-UAG-C(- UC-A)A-CUA -CA-U-AAG- 1321 -GGCC-AUGG A-AAC-UACA A-GACUU-GA GUG-----AA G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 ACU--UA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGC -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UUC 1981 -CGG-C--(- GAAA-)-GUU -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-UG -GA--CAAAG GGC-A-G-C- CA-ACU-G(G 2881 -CGA)CAGU- ---------- GC-GCUAA-U CCCAU-AAAC -CA-U-GGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-A-G G-AC-GC-CG A-AGGU-AGG GCU-GA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OPI-8 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone OPI-8.. ACCESSION No information KEYWORDS No information. SOURCE clone OPI-8. ORGANISM clone OPI-8. REFERENCE 1 AUTHORS Kopczynski,E.D., Bateson,M.M. and Ward,D.M. TITLE Recognition of chimeric small-subunit ribosomal DNAs composed of genes from uncultivated microorganisms JOURNAL Appl. Environ. Microbiol. 60, 746-748 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22047 BASE COUNT 279 a 273 c 380 g 234 t 3210 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .....CC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CAU---- ---------- 601 --(------- ----UUU--- ---)------ ---------| ----AU--G- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGN----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- NGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA GACC-GC-GU 961 G-C-GG-G-A G-GAC--G-G CC(--UA-UU --)GG-UUGU AAA--CCGC| UUUU-GA-UA 1021 --GG-GAA-- GA-A------ ---------( ------GCAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UC G-AA--UCAG ---------C 1141 -AUCGGCU-A AC.......( .......... .........) .......... |......... 1201 ........AU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UG- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-CGG-C(- UU-A)A-CCG -CA-U-ACC- 1321 -AGCA-GUGG A-AAC-UGGG C-GACUA-GA GUG-----CG G-UA-GGGGU CAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)SGCC- -UGACUGG-- ---------- ---------- ---------A 1501 CCU....... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... ......N--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-UGC -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CCAG--- -AA----CCC 1981 -UCU-U--(- GAAA-)-GGG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-GA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAGAG GGG-G-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCG--AAAA -GC-A-GUC- UCAGUUGGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAACG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- UU-GU-ACCC -GAA-G-UUG 3121 G-UGA-G-CU -AA-CCU--- ---------- ---------- -----(---- -ACA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGGGC-A G-CC-AA-CG A-AGGU-AUG GCC-GG-UA- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_I 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04709 library_source= Octopus Spring microbial mat DNA from Yellowstone NP BASE COUNT 320 a 304 c 412 g 263 t 3077 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAY-GC-- UGGC-GGU-C -UGC-UU--A ACAC-AUGCA A-GUC-GAAY 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGU-GC (--UU----- ---------- ---------- 241 --------CG -)GC-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G Y-CCUU---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CA----- ---------- 601 --(------- ---UUUUA-- ---)------ ---------| -----U--G- G--CCU---- 661 ----GAGG-- AUG---A-|G CUNGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 NG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA GACC-GC-GN 961 G-C-GG-G-A G-GAC--G-G CC(--UA-UU --)GG-UUGU AAA--CCGC| UUUU-GA-UA 1021 --GG-GAA-- GA-A------ ---------( ------GCAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UC G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UG- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-CGG-C(- UU-A)A-CCG -CA-U-ACC- 1321 -AGCA-GUGG A-AAC-UGGG C-GACUA-GA GUG-----CG G-UA-GGGGU CAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -CUGACUG-- ---------- ---------- ---------G 1501 ACC--UG-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-UGC -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ANNNN-N -N-C-CC--G 1861 C-A--CA-AG CGNUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CCAG--- -AA----CCC 1981 -UCC-U--(- GAAA-)-GGG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-GA-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACN-G- -GANN-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-G-CG -GA--CAAAG GGU-U-G-C- AA-GCU-C(G 2881 -CGA)GACG- ---------- AA-GCUAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CNGUG- AAUAC-NUU- CCC-NNN-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Llb.sp135 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptolyngbya sp. str. VRUC 135 Albertano 1985/1. ACCESSION No information KEYWORDS No information. SOURCE Leptolyngbya sp. str. VRUC 135 Albertano 1985/1. ORGANISM Leptolyngbya sp. REFERENCE 1 AUTHORS Nelissen,B.J.M., De Baere,R., Wilmotte,A. and De Wachter,R. TITLE Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis JOURNAL J. Mol. Evol. 42, 194-200 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84809 isolate_name= VRUC 135 Albertano 1985/1 BASE COUNT 365 a 338 c 471 g 292 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--UCU-G C-CUAC---A -GGAC-U-GG 421 -GAC-AA-CG U--------- ------UU-- G(-GAAA-)C -GGAC-G--C UAAAACC-GG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---UA----- ---------- 601 --(------- ---UNGUA-- ---)------ ---------| -----U--A- G--CCU---- 661 ----GUAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UG-UG --)GA-UUGU AAA--CCUC| UUUU-GA-UA 1021 --GG-GAA-- GA-A------ ---------( ------GCAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UC G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( C--CAGCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAGGGU -G|-GU-UA- 1261 A-UC-AAG|U CUA---UUGU C-AAA-GC-C UG-GGG-C(- UC-A)A-CCC -UG-G-AGA- 1321 -GGCG-GUGG A-AAC-UGGU U-AACUA-GA GUG-----CG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--GA-CU-- -------A|G -GU-GU-UGC -AC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUCUC C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGUGAG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCC 1981 -CCU-U--(- GAAA-)-GAG -G-GGAG--- UG-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-U-CG -GA--CAAAG GGU-CUG-C- GA-GCC-A(G 2881 -CGA)UGGC- ---------- AA-GCCAA-U CCCAU-AAAC -CG-A-GGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CC -AA-CCA--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-A-G G-AU-GC-CG A-AGGC-AGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osc.amphig 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Oscillatoria amphigranulata" str. CCC NZ-concert-Oa. ACCESSION No information KEYWORDS No information. SOURCE "Oscillatoria amphigranulata" str. CCC NZ-concert-Oa. ORGANISM "Oscillatoria amphigranulata". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS isolate_name= CCC NZ-concert-Oa BASE COUNT 198 a 205 c 283 g 178 t 3512 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......G-- AUG---A-|G CUCGN----- -NN|----CC H--AUNA-G- CUA-G---UU 721 GG-UG-AG-( GU-NAG-GG) -C-NUACC-N A|-GGC-GA- UGA------- -----UC--G 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|N-NC -NCUGG-N-N 841 (CUGA-GA-C NCG)--GCCN -NGN-C-CUC -(UNCC)--G GAG-NC-NG- C-N---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA UACC-GN-GU 961 G-A-GG-G-A G-GAA--G-G CC(--UU-UG --)GG-UCGU AAN--CCNN| UUUU-AU-UG 1021 --GG-GAA-- GA-A------ ---------( ------GCAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AA--UCAG ---------C 1141 -AUCGGCN-N ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ......G-GU -G|-GU-UA- 1261 A-UC-AAG|C UGC---CUNU U-AAA-GC-G UC-GGG-C(- UU-A)A-CCG -CA-U-AUC- 1321 -GGCA-GUGG --AAC-UGGU U-GACUN-GA GUU-----CG G-UA-GGGGU NAC-G|GGNA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGC- -GUGACUG-- ---------- ---------- ---------G 1501 GCC--N--AA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -GU-GU-UGC -CC-G----- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- --------CG -GGCAG-UGC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |...C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-N C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UN-G |-UN--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACN AUGCU-G-UG -GA--CRAAG AGU-C-G-C- NN-GCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUNA-U CACAU-AAAC -CA-C-GGC- UCNGUUCNGA 2941 U-UGCAGNC- (UGCNAC-U- N)-GCCUNSR -UGAAGG-CG -GAAU-CGC- -NAGUA-AUC 3001 GC-AGG-(UC -RGC-RU)-A CUG-CGGUN- NAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plec.borya 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptolyngbya boryanum. ACCESSION No information KEYWORDS No information. SOURCE Leptolyngbya boryanum. ORGANISM Leptolyngbya boryanum. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 336 a 293 c 413 g 272 t 3062 others ORIGIN 1 .......... .......... .......... ...CU-AUGA AGAGUN(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGU-A -UGC-UN--- ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--CAU-G C-CUUU---A -GAUU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAH-)C -GACU-G--C UAAUACC-GA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUM--- ---)------ ---------| -----U--U- G--UCU---- 661 ----AGAG-- AUU---G-|G CUCGC----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AC-U-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAC--G-G CN(--NU-UG --)GG-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------UCGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UU- 1261 A-UC-AAG|U CUG---CUGU C-AAA-GC-G UC-GGG-C(- UC-A)A-CCG -CA-U-AAG- 1321 -GGCA-GUGG A-AAC-UGAU G-AACUA-GA GUG-----CG A-UA-GGGGU AAC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGU- -GUUACUG-- ---------- ---------- ---------G 1501 GUC--UG-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -GC-GU-GGU -UC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUNGU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GN-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CCC 1981 -UGA-U--(- GAAA-)-GUU -A-GGGG--- UG-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CU-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CAUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCG-U-CG -GA--CAAAG AGC-A-G-C- CA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCNA-U CUCAU-AAAC -CG-G-CGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Llb.foveol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptolyngbya foveolarum str. Komarek 1964/112. ACCESSION No information KEYWORDS No information. SOURCE Leptolyngbya foveolarum str. Komarek 1964/112. ORGANISM Leptolyngbya foveolarum. REFERENCE 1 AUTHORS Nelissen,B.J.M., De Baere,R., Wilmotte,A. and De Wachter,R. TITLE Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis JOURNAL J. Mol. Evol. 42, 194-200 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84808 isolate_name= Komarek 1964/112 BASE COUNT 370 a 330 c 458 g 303 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGU-A -UGC-UUA-- ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--CAU-G C-CUUU---A -GAUU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--UCU---- 661 ----AAAG-- AUU---G-|G CUCGC----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-GG) -C-ACACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AC-U-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAC--G-G CU(--UU-UG --)GG-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------UCGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-GU-UU- 1261 A-UC-AAG|U CUG---CUGU C-AAA-GC-G UG-CGG-C(- UU-A)A-CCG -CA-U-AAG- 1321 -GGCA-GUGG A-AAC-UGAU G-AACUA-GA GUG-----CG A-UA-GGGGU AAC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGU- -GUUACUG-- ---------- ---------- ---------G 1501 GUC--UG-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -GC-GU-GGU -UC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CCC 1981 -UGA-U--(- GAAA-)-GUU -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CAUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCG-U-CG -GA--CAAAG AGC-A-G-C- CA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAU-AAAC -CG-G-CGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CUG--- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-G G-AC-GC-CG A-AGGU-GGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Llb.boryan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptolyngbya boryanum. ACCESSION No information KEYWORDS No information. SOURCE Leptolyngbya boryanum. ORGANISM Leptolyngbya boryanum. REFERENCE 1 AUTHORS Nelissen,B.J.M., De Baere,R., Wilmotte,A. and De Wachter,R. TITLE Phylogenetic relationships of nonaxenic filamentous cyanobacterial strains based on 16S rRNA sequence analysis JOURNAL J. Mol. Evol. 42, 194-200 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84810 BASE COUNT 367 a 321 c 445 g 300 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......U-A -UGC-UUA-- ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--CAU-G C-CUUU---A -GAUU-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--UCU---- 661 ----AGAG-- AUU---G-|G CUCGC----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-AG-UG-( GU-AAC-G-) -C-ACACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AC-U-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G NAG-GC-NG- C-A---GU-G 901 GGG-AAUUUU A-AGCAAU-- GG-GC-(GAA A)-GNN-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAC--G-G NU(--UU-UG --)GG-UUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------UCGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UN-GGGC|G UAAA-GCGUU CCG-UAG-GU -G|-GU-UU- 1261 A-UC-AAG|U CUG---CUGU C-AAA-GC-G UG-CGG-C(- UU-A)A-CCG -CA-U-AAG- 1321 -GGCA-GUGG A-AAC-UGAU G-AACUA-GA GUG-----CG A-UA-GGGGU AAC-A|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)N-GU- -GUUACUG-- ---------- ---------- ---------G 1501 GUC--UG-CA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- N-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -GC-GU-GGU -UC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -AGCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CCC 1981 -UGA-U--(- GAAA-)-GUU -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CAUAC-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGNG-U-CG -GA--CAAAG AGC-A-G-C- CA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAU-AAAC -CG-G-CGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CUG--- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-G G-AC-GC-CG A-AGGU-GGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5 SYNECHOCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5 SYNECHOCOCCUS_GROUP. ORGANISM 2.11.1.5 SYNECHOCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5.1 PRC.MARINUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5.1 PRC.MARINUS_SUBGROUP. ORGANISM 2.11.1.5.1 PRC.MARINUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11937 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 69 a 54 c 88 g 56 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-UU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAA A-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCC(-U UGAAA)-UGC -GU-AGAU-A UC-GGGAAGA ACCA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC UA-G------ -------GA- C-GAAA-GC- CA-AGG-GA- 1561 GC--AA-AG- -GG(AUUA-G AUAC)-CCU- ----GAGU-C .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-33 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11973 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 73 a 56 c 96 g 60 t 4091 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-UU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAA A-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCU(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GU(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC UA-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CC-- ----UGUA-G UC----CCG- G-CC-GU--A 1621 AAC-G-AUGA .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11981 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA NB: presumed 3' vector seq. UCGUAGCAUCCGUAUUGUGUCCCG BASE COUNT 74 a 60 c 91 g 68 t 4083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-UU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAA A-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCU(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGAUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACU-CUC AU-G------ -------GA- C-GAAA-GU. .......... 1561 .......... ...(AUUA-G AUAC)-CC-- ----UGUA-G UC----CUG- G-CC-GU--A 1621 A-C-G-AUGA A--CA-CA-- -------U|. .GU-GU-CG. ..G-G----- ---------- 1681 -(AAU-AC)C ---------- ---------- ---------- --------CC -UUC...... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11979 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA BASE COUNT 61 a 49 c 83 g 51 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|A UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAU U-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCN(-- UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA.... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11978 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA BASE COUNT 58 a 48 c 81 g 52 t 4137 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAU U-GGCUU-GA GUA-----UG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCM(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAGA ACCA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG.... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11975 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 52 a 46 c 75 g 51 t 4152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-AC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAU U-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- ACCA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA UCGACG-CUC AU........ .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11955 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 74 a 62 c 98 g 60 t 4082 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UC-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAU C-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCN(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU....... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11971 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 58 a 51 c 74 g 49 t 4144 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CC- 1261 U-UC-AAG|U CUG---CUGU U-AAA-AC-G UG-GAG-C(- UC-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGAU U-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCN(-- UGAAA)-UNC -GU-AGAU-A UC-GGGAAG- AACC-ACCA- 1441 -G-U-NC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA........ 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52169 library_source= Sargasso Sea bacterioplankton DNA geog_source= Sargasso Sea, 1-2 metres depth NB: IDENT: env. group related to Syn.6301 BASE COUNT 362 a 343 c 456 g 309 t 2906 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 UA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-CGU--GA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-UU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UAAG ---------C 1141 -CACGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-GC-G UG-GAG-C(- UU-A)A-CUC -CA-U-UAU- 1321 -GGCA-GUGG A-AAC-UGAU C-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCGG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U -U-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UGAG--- -AA----CCU 1981 -CUU-A--(- GAAA-)-UUU -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-CC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGC-A-G-C- AC-ACU-C(G 2881 -CGA)GAGC- ---------- UA-GCAAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-CCA--- --CCA-UGGA A--GU-UGG- CC-AU-GCCC -GAA-G-UCG 3121 U-UAC-U-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-G G-AC-GC-CG A-A-GU-GGG GCU-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGGGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11977 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 80 a 64 c 106 g 64 t 4062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-AC-G UG-GAG-C(- UU-A)A-CUC -CA-U-UAU- 1321 -GGCA-GUGG A-AAC-UGAU A-GGCUU-GA GUA-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CCGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CC-- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- ---------- -UUCG..... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prc.marinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prochlorococcus marinus str. SSW5. ACCESSION No information KEYWORDS No information. SOURCE Prochlorococcus marinus str. SSW5. ORGANISM Prochlorococcus marinus. REFERENCE 1 AUTHORS Urbach,E., Robertson,D.L. and Chisholm,S.W. TITLE Multiple evolutionary origins of Prochlorophytes within the cyanobacterial radiation JOURNAL Nature 355, 267-270 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63140 isolate_name= SSW5 BASE COUNT 293 a 264 c 356 g 234 t 3229 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ........G- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UAAG ---------C 1141 -CACGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CUG---CUGU A-AAA-AC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -CGCA-GUGG A-AAC-UGAA G-GGCUC-GA GUG-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCGG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -CUU-A--(- GAAA-)-UUU -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCAAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-CGUAG... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52170 library_source= Sargasso Sea bacterioplankton DNA geog_source= Sargasso Sea, 1-2 metres depth NB: IDENT: env. group related to Syn.6301 BASE COUNT 66 a 66 c 84 g 59 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CN-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CU-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 911.. ACCESSION No information KEYWORDS No information. SOURCE clone 911. ORGANISM clone 911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89338 BASE COUNT 60 a 52 c 69 g 40 t 4155 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( ...AAA-GG) -C-CUACC-A A|-GGUCAUU CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-CU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AA--UAAG ---------C 1141 -CA....... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52171 library_source= Sargasso Sea bacterioplankton DNA geog_source= Sargasso Sea, 1-2 metres depth NB: IDENT: env. group related to Syn.6301 BASE COUNT 365 a 340 c 465 g 303 t 2903 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 GA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UGUAG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCU--GA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-AU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CACGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CC- 1261 A-GA-AAG|U CUG---CUGU U-AAA-AC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGUU G-GGCUU-GA GUG-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCGG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UGAG--- -AA----CCU 1981 -CUU-A--(- GAAA-)-UUU -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAGG GGC-A-G-C- AA-GUU-C(G 2881 -CGA)GGAC- ---------- AA-GCAAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 AC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CC-AC-GCCC -GAA-G-CCG 3121 U-UAC-U-CN -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-G G-AA-GU-N- N-AGGU-GGG GCU-GA-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGCGGU--UG GAUCACCUCC 3361 UUG~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR100 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Britschgi,T.B. and Giovannoni,S.J. TITLE Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing JOURNAL Appl. Environ. Microbiol. 57, 1707-1713 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63813 library_source= Sargasso Sea bacterioplankton DNA BASE COUNT 320 a 300 c 408 g 263 t 3085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UN--A NACA-UGCCA A-GUC-GAKC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 GA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UGUGG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCU--GA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-AU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CACGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGANUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GN-CU- 1261 U-UC-AAG|U CUG---CUGU U-AAA-AC-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGUU G-GGCUU-GA GUG-----UG G-UA-GGGGN AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-CA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CN-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CUCGG-UGU 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UCU 1981 -CUU-G--(- GAAA-)-CGA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AG---| CGC-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGC-A-G-C- AA-GUU-C(G 2881 -CGA)GGAC- ---------- AA-GCAAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR139 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Britschgi,T.B. and Giovannoni,S.J. TITLE Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing JOURNAL Appl. Environ. Microbiol. 57, 1707-1713 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63814 library_source= Sargasso Sea bacterioplankton DNA BASE COUNT 324 a 303 c 406 g 262 t 3081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UN--A NACA-UGC-A A-GUC-GAKC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------C (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 GA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCU--GA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UC-UG --)GG-CUGU AAA--CCUC| UUUU-AU-CA 1021 --AG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CACGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GC-CC- 1261 U-UC-AAG|U CUG---CUGU U-AAA-AA-G UG-GAG-C(- UU-A)A-CUC -CA-U-CAU- 1321 -GGCA-GUGG A-AAC-UGUU G-GGCUU-GA GUG-----UG G-UA-GGGGC AGA-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUGCUG-- ---------- ---------- ---------G 1501 GCC--AU-CA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CUCGG-UGU 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -C-G-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UCU 1981 -CUU-G--(- GAAA-)-CGA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-CG -GA--CAAAG GGC-A-G-C- AA-CUU-C(G 2881 -CGA)GGAC- ---------- AA-GCAAA-U CCCAU-AAAC -CG-U-GGC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5.2 MICROCYSTIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5.2 MICROCYSTIS_SUBGROUP. ORGANISM 2.11.1.5.2 MICROCYSTIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syn.6301 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus sp. ORGANISM Synechococcus sp. REFERENCE 1 AUTHORS Tomioka,N. and Sugiura,M. TITLE The complete nucleotide sequence of a 16S ribosomal RNA gene from a blue-green alga, Anacystis nidulans JOURNAL Mol. Gen. Genet. 191, 46-50 (1983) STANDARD No information REFERENCE 2 AUTHORS Kumano,M., Tomioka,N., Shinozaki,K. and Sugiura,M. TITLE Analysis of the promoter region in the rrnA operon from a blue-green alga, Anacystis nidulans 6301 JOURNAL Mol. Gen. Genet. 202, 173-178 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X03538 BASE COUNT 370 a 350 c 476 g 292 t 2888 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CAAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-G C-CUAC---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GUAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GC---GA CGGA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A G-GAA--G-G UU(--UU-UG --)GA-CUGU AAA--CCCC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -CUCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGA |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- CUG-CAG-GC -G|-GU-UA- 1261 A-UC-AAG|U CUG---UUGU C-AAA-GC-G UG-GGG-C(- UC-A)A-CCU -CA-U-ACA- 1321 -GGCA-AUGG A-AAC-UGAU U-GACUA-GA GUA-----UG G-UA-GGGGU AGC-G|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGC- -GCUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-UGC -GU-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -CGCAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U UG-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---CCCG--- -AA----UCU 1981 -CUU-G--(- GAAA-)-CGA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-C-CG -GA--CAGCG AGA-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-U CUCCC-AAAC -CG-G-GGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CC-AU-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCG--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-G G-GC-GC-CG A-AGGU-AGG GCU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.elaben 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis elabens.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis elabens. ORGANISM Microcystis elabens. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40335|g1150964 BASE COUNT 377 a 360 c 477 g 282 t 2880 others ORIGIN 1 .......... ...AUUCAAA UUACGUCGUA AACCAGAUGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAG -GAAC-GC-- UGGU-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)AG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AAUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-C C-CUAC---A -GGAC-G-GG 421 -GAC-AC-CA G--------- ------UC-- G(-AAAA-)C -GACC-G--U AAAGCCC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GAAA-- ---CA----- ---------- 601 --(------- ---UAUC--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GGAG-- AAG---C-|G CCCGA----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CG------ GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GG-G-G A-GAA--G-G CU(--UU-UG --)GA-CUGU AAA--CCCC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------UCCA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--AAGG ---------C 1141 -CGCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GU-UA- 1261 A-UC-AAG|U CUG---UUGU C-AAA-UC-G UG-GGG-C(- UC-A)A-CCU -CA-U-AAA- 1321 -GGCA-GUGG A-AAC-UGGA U-GACUA-GA GUG-----UG G-UA-GGGGU AGA-U|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAA- -UCCACUG-- ---------- ---------- ---------G 1501 GAU--AU-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG C--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- -A-------- 1681 -(AUC-UC)C C--------- ---------- ---------- --------CG -CGCCG-UGC 1741 CG--AA---- --GG-(CAA- ---C)G-CG- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(A UUA)---A-A AC-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAUUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|--- ---------C ---CGCG--- -AA----CCC 1981 -CUU-G--(- GAAA-)-CAA -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG--C| CAG-AC-ACA |---G|A--G 2161 GU-G---GCA UG|G-GUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -GA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GACG- ---------- GA-GCUAA-U CCCAC-AAAC -UG-G-GGC- UUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GCUUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CU-UU-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCG--- ---------- ---------- -----(---- -GAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-G G-GC-CC-UA A-GGAG-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUAC A(GUC-U)AG AGCGGA--GC CAG....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcs.holsat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microcystis holsatica.. ACCESSION No information KEYWORDS No information. SOURCE Microcystis holsatica. ORGANISM Microcystis holsatica. REFERENCE 1 AUTHORS Neilan,B.A. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40336|g1150965 BASE COUNT 379 a 359 c 467 g 285 t 2886 others ORIGIN 1 .......... GAAUUCAAAU UGACGGCUCA AACCAGAUGU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- A-A--UCU-C C-CUAC---A -GGAC-G-GG 421 -GAC-AC-CA G--------- ------UC-- -(-GAAA-)C -GACC-G--U AAAUCCC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----GCAA-- ---UA----- ---------- 601 --(------- ---CAUC--- ---)------ ---------| -----U--G- G--CCU---- 661 ----GUAG-- AUG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-CC-AG- C-A---GU-G 901 GGG-AAGAUU C-CGCAAU-- GG-GC-(GGA A)-UCC-UGA CGGA|-GCCA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G UC(--UU-UG --)GA-CUGU AAA--CCUC| UUUU-CU-CA 1021 AUGG--AA-- GA-A------ ---------( ------GAAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- CCG-CAG-GG -G|-GU-UA- 1261 A-UC-AAG|U CUG---UUGU C-AAA-UC-G UG-GGG-C(- UC-A)A-CCU -CA-U-AAA- 1321 -GGCA-GUGG A-AAC-UGGA U-GACUA-GA GAG-----UA G-UA-GGGGU AGC-G|GGAA 1381 UU-CCCGGU- GUA-GC-(-G UGAAA)-UGC -GU-AGGA-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGC- -GCUACUG-- ---------- ---------- ---------G 1501 GAU--AU-AA CUGACG-CUC AU-G------ -------GA- C-GCAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUC- A-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- -A-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -CGCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-CA--(C CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -AUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UCC 1981 -CUU-G--(- GAAA-)-CGA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCC-AG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-C-CG -GA--CAGAG GGA-U-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- UA-GCUAA-U CCCAC-AAAC -CG-G-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- UC-AU-GCCC -GAA-G-UCG 3121 U-UAC-C-CU -AA-CCG--- ---------- ---------- -----(---- -GAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-G G-GC-GC-CA A-AGGG-AGG GCU-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUAC A(GUC..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5.3 PRTX.HOLLANDICA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5.3 PRTX.HOLLANDICA_SUBGROUP. ORGANISM 2.11.1.5.3 PRTX.HOLLANDICA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prtx.holla 4376 bp RNA RNA 02-JUL-1998 DEFINITION Prochlorothrix hollandica.. ACCESSION No information KEYWORDS No information. SOURCE Prochlorothrix hollandica. ORGANISM Prochlorothrix hollandica. REFERENCE 1 AUTHORS Olsen,G.J. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 310 a 276 c 368 g 248 t 3174 others ORIGIN 1 .......... .......... .......... ...AAACGGU AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAU -WAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--CCU-A C-CCUA---A -GGAC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-GU----- ---------- ---------- ---------- ---GCC-(-- --------GA 541 GA-------- -)-GGU---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAGG-- AUG---G-|M CUCGC----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-AA- CGA------- -----UC-UG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-GG-G-A G-GAA--G-G UU(--UU-AG --)GA-CUGU GAA--CCAC| UNUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -AUCGGCN-N AUUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... ...AA-GC-A CA-CAG-C(- UN-A)A-CUN -UG-G-GAG- 1321 -AGCG-AUSG A-AAC-UCUC A-GACUA-GA GUG-----CG G-UA-GGGGU AGG-G|GSWA 1381 UU-CCCGGU- GUA-GCG(-G UUAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -C-A-GC(-G AA-A)GCCC- -CCUACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUUACG-CUC AU-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UUUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-NU-UGU -CU-GK---- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GACAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- U-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-UAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AK CGGUGG-AGU A-U-GU-NGU -UUWAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCG--- -AA----UCU 1981 -CUG-U--(- GAAA-)-GUG -G-AGAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GG-AGA |---C|A--G 2161 GU-GG-UGUA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUU- 2281 AG--UUGC-C AU-YA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-WGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UK-KGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-A-GG -GA--CAAAG AGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- NA-GCUNA-U CUCAU-MAAC -CC-U-NGC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-R CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5.4 PHORMIDIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5.4 PHORMIDIUM_SUBGROUP. ORGANISM 2.11.1.5.4 PHORMIDIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phrm.minut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phormidium minutum str. D5. ACCESSION No information KEYWORDS No information. SOURCE Phormidium minutum str. D5. ORGANISM Phormidium minutum. REFERENCE 1 AUTHORS Wilmotte,A., Turner,S. and Pace,N. TITLE Taxonomical study of marine oscillatorialean strains (Cyanophyceae, Cyanobacteria) with narrow trichomes. II. Nucleotide sequence analysis of the 16S ribosomal RNA JOURNAL J. Phycol. 28, 828-838 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62686 isolate_name= D5 BASE COUNT 352 a 318 c 447 g 282 t 2977 others ORIGIN 1 .......... .......... .......... ..NNACAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--UCU-G C-CCUC---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AU----- ---------- ---------- ---------- ---GGC-(-- --------GA 541 GA-------- -)-GCU---- ---------- ----AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----GAGG-- AUG---A-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-GG-GU-( GU-AAU-GG) -A-CUCCC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A G-GAA--U-G UC(--UG-UG --)GA-UUGU AAA--CCCC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GUCC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-A AC.......( .......... .........) ......GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CGG-UAG-GC -G|-GU-UA- 1261 A-UC-AAG|U CUG---UUGU C-AAA-GA-C UG-CAG-C(- UC-A)A-CUG -UG-G-AAA- 1321 -GGCA-AUGG A-AAC-UGAA U-AACUG-GA GUG-----CG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UUCAG-UAC 1741 CG--CA---- --GC-(CAA- ---C)G-CG- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCG--- -AA----UCC 1981 -UCG-A--(- GAAA-)-UUG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCU-U-CG -GA--CAAAG GGC-A-G-C- AA-GCG-U(G 2881 -CGA)GCGC- ---------- AA-GCUAA-U CCCAU-AAAC -CG-A-GGC- ACAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CC-AC-GCCC -GAA-G-UCG 3121 U-UAC-U-CU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-A-G G-GC-GC-CG A-AGGU-GGG GCU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phrm.ectoc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phormidium "ectocarpi". ACCESSION No information KEYWORDS No information. SOURCE Phormidium "ectocarpi". ORGANISM Phormidium "ectocarpi". REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 324 a 278 c 394 g 256 t 3124 others ORIGIN 1 .......... .......... .......... ......A-GG AGAG-U(U-G A)U-CCU|-G 61 GCYCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UA--A ACAC-AUGCA A-GUC-GAAC 121 G--AAC---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--UU----- ---------- ---------- 241 --------CG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|CUN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- G-A--UCU-G C-CCUU---A -GGCG-G-GN 421 -GAC-AA-CU U--------- ------UU-- G(-GAAA-)C -GGAA-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GGC-(-- --------GG 541 GA-------- -)-GCU---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUAAU-- ---)------ ---------| -----G--U- G--CCU---- 661 ----GAGG-- AUG---A-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCN A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--U-G UC(--UG-UG --)GA-UUGU AAA--CCUC| NNUU-CU-CU 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-A ACUCN-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GAUG-C-- 1201 HAG-CGUUAU CN-GGAAUUA -UU-GGGC|G NNAA-GCG-- CUG-UAG-GC -G|-GN-UA- 1261 A-UC-AAG|U CAG---UUGU U-AAA-GA-C UG-CAG-C(- UC-A)A-CUG -UG-G-GAG- 1321 -AGCA-ACUN A-AAC-UGGU U-AACUA-GA GUA-----UG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--AA-GA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CNA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGU -GC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCAG-UAC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGNAC 1801 GCC-C---(G CMA)---G.. .......... .......... .......... .......... 1861 .......... ...UGG-AGU A-U-GU-GG- -UUAAUU-CG -(A--NAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CUCG--- -AA----UAU 1981 -CUA-A--(- GAAA-)-UUA -G-GUAG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CNUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCA-A-CG -GA--CAAAG GGC-A-G-C- CA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCUNA-U CCCAU-AAAC -CG-N-UGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phrm.ecto2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phormidium "ectocarpi" str. CCAP 1462/5. ACCESSION No information KEYWORDS No information. SOURCE Phormidium "ectocarpi" str. CCAP 1462/5. ORGANISM Phormidium "ectocarpi". REFERENCE 1 AUTHORS Wilmotte,A., Turner,S., Van de Peer,Y. and Pace,N.R. TITLE Taxonomical study of marine oscillatorialean strains (Cyanophyceae, Cyanobacteria) with narrow trichomes. II. nucleotide sequence analysis of the 16S ribosomal RNA JOURNAL J. Phycol. 28, 828-838 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62081 (bases 1 to 408) isolate_name= CCAP 1462/5 BASE COUNT 269 a 219 c 310 g 215 t 3363 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------...G 541 GA-------- -)-GCU---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUAAU-- ---)------ ---------| -----G--U- G--CCU---- 661 ----GAGG-- AUG---A-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--U-G UC(--UG-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CU 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....UA- 1261 A-UU-AAG|U CAG---UUGU U-AAA-GA-C UG-CAG-C(- UC-A)A-CUG -UG-G-GAG- 1321 -AGCA-ACUG A-AAC-UGGU U-AACUA-GA GUA-----UG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--AA-GA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGU -GC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCAG-UAC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GA..... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)...GAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CUCG--- -AA----UAU 1981 -CUA-A--(- GAAA-)-UUA -G-GUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCA-A-CG -GA--CAAAG GGC-A-G-C- CA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCUAA-U CCCAU-AAAC -CG-U-UGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phrm.ecto4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phormidium "ectocarpi" str. N182. ACCESSION No information KEYWORDS No information. SOURCE Phormidium "ectocarpi" str. N182. ORGANISM Phormidium "ectocarpi". REFERENCE 1 AUTHORS Wilmotte,A., Turner,S., Van de Peer,Y. and Pace,N.R. TITLE Taxonomical study of marine oscillatorialean strains (Cyanophyceae, Cyanobacteria) with narrow trichomes. II. nucleotide sequence analysis of the 16S ribosomal RNA JOURNAL J. Phycol. 28, 828-838 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62465 (bases 1 to 793) isolate_name= N182 BASE COUNT 331 a 276 c 396 g 266 t 3107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGG- 361 -A-CR-GG-U GAGU---AAC NGC-GNUGA- GGA--UCU-G C-CCUU---A -GGGG-N-NG 421 -GAC-AA-CU U--------- ------UU-- G(-GAAA-)C -GGAA-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GGC-(-- --------GG 541 GA-------- -)-GCU---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUAAU-- ---)------ ---------| -----G--U- G--CCU---- 661 ----GAGG-- AUG---A-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--U-G UC(--UG-UG --)GA-UUGU AAA--CCUC| UUUU-CU-CU 1021 --GG-GAA-- GA-A------ ---------( ------GAUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AA--UCAG ---------C 1141 -AUCGGCU-R ACUCC....( .......... .........) ....C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- C-G-UAG-GC -G|-GU-UA- 1261 A-UU-AAG|U CAG---UUGU U-AAA-GA-C UG-CAG-C(- UC-A)A-CUG -UG-G-GAG- 1321 -AGCA-ACUG A-AAC-UGGU U-AACUA-GA GUA-----UG G-UA-GGGGU AGA-G|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UCUACUG-- ---------- ---------- ---------G 1501 GCC--AA-GA CUGACG-CUG AU-G------ -------GA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGU -GC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCAG-UAC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CUCG--- -AA----UAU 1981 -CUA-A--(- GAAA-)-UUA -G-AUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGCA-A-CG -GA--CAAAG GGC-A-G-C- CA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCUAA-U CCCAU-AAAC -CG-U-UGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- NCC-NGG-CC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.1.5.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.1.5.5 SYN.LIVIDUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.1.5.5 SYN.LIVIDUS_SUBGROUP. ORGANISM 2.11.1.5.5 SYN.LIVIDUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syn.lividu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Synechococcus lividus str. Y-7B7C-S. ACCESSION No information KEYWORDS No information. SOURCE Synechococcus lividus str. Y-7B7C-S. ORGANISM Synechococcus lividus. REFERENCE 1 AUTHORS and Pace,N.R. Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. TITLE chloroplasts Evolutionary relationships among cyanobacteria and green JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS isolate_name= Y-7B7C-S BASE COUNT 181 a 170 c 229 g 145 t 3651 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .........U 721 NG-UG-GG-( GN-AAU-UG) -C-CUACG-A A|-GGC-NA- CGA------- -----UC-AN 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCN -NGA-C-UCM -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA GACC-GN-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CCNN| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( ------CACN A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UNAG ---------C 1141 -CUCGGCU-N ACU......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... ......A-GA GUA-----CG U-CA-GGGGU AGG-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -C-G-AC(-G AA-A)GUGC- -CCUACUG-- ---------- ---------- ---------G 1501 GAC--GU-UA CUGACA-CUC AU-G------ -------GA- C-NNAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-UGC -UG-G----- -U-------- 1681 -(AUC-CA)C U--------- ---------- ---------- --------CC -AGHAG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUC C|N|G-CCU- N-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....GUU- 2281 AG--UUGC-- AG-CA----- ---------- ---------- ---U(---UC ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N----CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUWC-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACW AUGCU-G-UG -GA--CAGAG AGU-U-G-C- MA-ACC-C(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CUCUU-AAAC -CA-C-GGC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUWC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tdb.commu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermodesulfobacterium commune.. ACCESSION No information KEYWORDS No information. SOURCE Thermodesulfobacterium commune. ORGANISM Thermodesulfobacterium commune. REFERENCE 1 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE well-studied thermal community 16S rRNA sequences reveal uncultured inhabitants of a JOURNAL FEMS Microbiol. Rev. 75, 105-116 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67090|g48127 (bases 1 to 188) NB: Referred to as the type strain This organism is not properly named at the genus level The genus name should have brackets around it BASE COUNT 134 a 143 c 178 g 115 t 3806 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|......A- CGA------- -----UC-A- 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----NA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCN -NGW-C-UCM -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA GACC-GN-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CCNN| UUUU-CU-AA 1021 --NG-GAA-- GA-A------ ---------( -----CACNA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UNAG ---------C 1141 -CUNGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ......GGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -C-G-AC(-G AA-A)GUGC- -CCUACUG-- ---------- ---------- ---------G 1501 GAC--GU-UA CUGACA-CUC AU-G------ -------GA- C-NNAA-GC- UA-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-UGC -UG-G----- -U-------- 1681 -(AUC-CA)C U--------- ---------- ---------- --------CC -AGHNG-UGC 1741 CG--UA---- --GC-(CNA- ---C)G-CG- UUNA-GUGUC C|N|G-CCU- N-GGGWGUNC 1801 GC......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ....CG--UC -U-AGUC-AU CWU-G-CC-C CUUWC-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACW AUGCU-G-UG -GA--CWGAG AGU-U-G-C- MA-ACC-C(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CUCUU-NAAC -CA-C-GGC- UCWGUUYWGA 2941 U-UGCAGGC- (UGCWWC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UWGUW-AUC 3001 GC-AGG-(UC -AGC-AN)-N CVG-CGGUG- AAUWC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.2-CHL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.2 CHLOROPLASTS_AND_CYANELLES. ACCESSION No information KEYWORDS No information. SOURCE 2.11.2 CHLOROPLASTS_AND_CYANELLES. ORGANISM 2.11.2 CHLOROPLASTS_AND_CYANELLES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.3-GLO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.3 GLOEOBACTER_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.11.3 GLOEOBACTER_ASSEMBLAGE. ORGANISM 2.11.3 GLOEOBACTER_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Glb.violac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gloeobacter violaceus. ACCESSION No information KEYWORDS No information. SOURCE Gloeobacter violaceus. ORGANISM Gloeobacter violaceus. REFERENCE 1 AUTHORS Giovannoni,S.J., Turner,S., Olsen,G.J., Barns,S., Lane,D.J. and Pace,N.R. TITLE Evolutionary relationships among cyanobacteria and green chloroplasts JOURNAL J. Bacteriol. 170, 3584-3592 (1988) STANDARD No information COMMENTS BASE COUNT 335 a 347 c 464 g 259 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACGC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCUC---A -GGAG-G-GG 421 -GAU-AA-CG G--------- ------CC-- G(-GAAA-)C -GGCC-G--C UAAUACC-CC 481 AU-AU----- ---------- ---------- ---------- ---GCC-(-- --------GC 541 AA-------- -)-GGU---- ---------- ----GAAAU- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-URA CGGA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--CG-UG --)GG-UCGU AAA--GCCC| UUUU-GU-CA 1021 --GG-GAC-- GA-A------ ---------( -------ACC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-CA- 1261 G-CC-AAG|U CUG---GGGU C-AAA-GC-C CG-CAG-C(- CU-A)A-CUG -CG-G-AAA- 1321 -GGCC-CUGG A-AAC-UGGU U-GGCUA-GA GUG-----CG G-UA-GGGGC AAG-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGU -GG-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACC--GC-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-UGC -GC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -UGCAG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCU 1981 -CGC-G--(- GAAA-)-CGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUC- 2281 AG--UUGC-C AU-CA-UUC- ---------- ---------- ----(----- --------)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ---AGUUG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-U CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-CG -GA--UAAAG GGU-C-G-C- AA-UCU-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAC -CG-A-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-Y- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GC-UGG- UC-AU-GCCC -GAA-G-UCG 3121 G-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GC-CG A-AGGC-GGG GCC-GG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52544 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:related to cyanobacteria in general; member gp with OS_B2 BASE COUNT 94 a 115 c 138 g 76 t 3953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(...AAA-- G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGCG--- -AA----CCC 1981 -UGC-G--(- GAAA-)-CGU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CNC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -GA--CAAAG GGC-A-G-C- GA-ACG-C(G 2881 -CGA)GCGG- ---------- GA-GCCAA-U CCCAA-AAAC -CG-C-GUC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_B2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 3 AUTHORS Weller,R., Weller,J.W. and Ward,D.M. TITLE 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA JOURNAL Appl. Environ. Microbiol. 57, 1146-1151 (1991) STANDARD No information REFERENCE 4 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62776 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:related to cyanobacteria in general; member gp with OS_A BASE COUNT 313 a 317 c 443 g 236 t 3067 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAY-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGYA A-GUC-GCAY 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 -------CGK -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GYGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- A-A--UCU-A C-CCUC---A -GGCG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-CC 481 AU-ACA---- ---------- ---------- ---------- ---GGC-(-- --------GG 541 AA-------- -)-GCU---- ---------- ----GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- A--CCU---- 661 ----GAGG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA UACC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-GG 1021 --GG-GAC-- GA-------- ---------( -----AAGCU ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-C-AG G-AA--UAAG ---------C 1141 -CUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GC-UG- 1261 G-UC-AAG|U CUG---GGGU Y-AAA-GG-C CA-CAG-C(- UC-A)A-CUG -UG-G-GAA- 1321 -GGCC-CUGG A-AAC-UGAC C-GGCUA-GA GUG-----AG G-UA-GGGGU UGC-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAAG- AACA-CCUG- 1441 -A-G-GC(-G GA-A)GCGC- -GCAACUG-- ---------- ---------- ---------G 1501 GCC--UC-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-UG- -GG(AUUA-G AUAC)-CCC- ----AGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -AC-GU-UGG -CC-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CG -GUCAG-UGU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AU-CAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGCG--- -AA----CCC 1981 -UGC-G--(- GAAA-)-CGU -G-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-CY -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -GA--CAAAG GGU-C-G-C- GA-GCG-C(G 2881 -CGA)GCGU- ---------- GA-GCCAA-U CCCAA-AAAC -CG-C-GUC- UCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_J 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Kopczynski,E.D., Heimbuch,B.K., Bateson,M.M. and Weller,R. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04710 library_source= Octopus Spring microbial mat DNA from Yellowstone NP BASE COUNT 265 a 248 c 341 g 227 t 3295 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... .GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUAYC-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--CCUC| UUUU-CU-CA 1021 --GG-GAA-- GA-A------ ---------( -------UUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUC-C) G-A-C-GAAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- ACG-UAG-GC -G|-GC-UU- 1261 G-UC-AAG|U CCC---GGGU U-AAA-UC-C CG-CAG-C(- UU-A)A-CUG -CG-G-AUC- 1321 -GGCC-UUGG A-AAC-UGGC U-UGCUG-GA GUG-----UG G-UA-GGGGU AGC-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGC- -GCUACUG-- ---------- ---------- ---------G 1501 ACC--AU-GA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -AU-GU-UGC -CC-G----- -U-------- 1681 -(AUA-GA)C C--------- ---------- ---------- --------CG -GGCAG-UGU 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-N...... .......... 1861 .......... ...UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----UCC 1981 -UGG-G--(- GAAA-)-CCU -G-GGAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CAUUCA- ---------- ---------- ----(----- --------)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -UGAG-A-AN 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-UG -GA--CAGAG GGA------- --------(- 2881 ----)----- ---------- -----UAA-U NCCU--AAAC -UA-C-GUC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGG-CG -GAAU-CCG- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-NNN-NC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.4-ENV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.4 ENVIRONMENTAL_UN_CLONES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.4 ENVIRONMENTAL_UN_CLONES_GROUP. ORGANISM 2.11.4 ENVIRONMENTAL_UN_CLONES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.4.1 ENV.UN104_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.4.1 ENV.UN104_SUBGROUP. ORGANISM 2.11.4.1 ENV.UN104_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN47 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN47.. ACCESSION No information KEYWORDS No information. SOURCE clone UN47. ORGANISM clone UN47. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63619|g960333 BASE COUNT 90 a 65 c 96 g 78 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CC-CGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN30 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN30.. ACCESSION No information KEYWORDS No information. SOURCE clone UN30. ORGANISM clone UN30. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63611|g960325 BASE COUNT 90 a 66 c 96 g 78 t 4046 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CCCCGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN75 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN75.. ACCESSION No information KEYWORDS No information. SOURCE clone UN75. ORGANISM clone UN75. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63630|g960344 BASE COUNT 90 a 65 c 96 g 78 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CC-CGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN64 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN64.. ACCESSION No information KEYWORDS No information. SOURCE clone UN64. ORGANISM clone UN64. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63627|g960341 BASE COUNT 90 a 65 c 96 g 78 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CC-CGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN104 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN104.. ACCESSION No information KEYWORDS No information. SOURCE clone UN104. ORGANISM clone UN104. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63590|g960304 BASE COUNT 90 a 65 c 96 g 78 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CC-CGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN81 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN81.. ACCESSION No information KEYWORDS No information. SOURCE clone UN81. ORGANISM clone UN81. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63634|g960348 BASE COUNT 89 a 65 c 97 g 78 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAG-GCGU- AUG-UAG-GC -U|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU A-AAA-UU-U CC-CGG-C(- UC-A)A-CCG -AG-A-AAA- 1321 -GCCU-AAUG GAUAC-UGUU C-GACUU-GA GUG-----UG G-GA-GAGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-U-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN79 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN79.. ACCESSION No information KEYWORDS No information. SOURCE clone UN79. ORGANISM clone UN79. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63633|g960347 BASE COUNT 87 a 62 c 100 g 79 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -G|-GU-CG- 1261 U-AU-AAG|U CUU---UAGU G-AAA-UU-U CU-CGG-C(- UU-A)A-CCG -AG-A-AAG- 1321 -GUCU-AAAG A-UAC-UGUU U-GACUU-GA GUG-----UG G-GA-GGGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUCCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUA AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN62 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN62.. ACCESSION No information KEYWORDS No information. SOURCE clone UN62. ORGANISM clone UN62. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63626|g960340 BASE COUNT 87 a 60 c 101 g 80 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-AGGC|G UAAA-GCGU- AUG-UAG-GC -G|-GU-CA- 1261 U-AU-AAG|U CUU---UAGU G-AAA-UU-U AU-CGG-C(- UU-A)A-CCG -GG-A-AAG- 1321 -GUCU-AAGG A-UAC-UGUU U-GACUU-GA GUG-----UG G-GA-GGGGG AGA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-A)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUA AU-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -AU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-CGU 1741 CG--AC.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.11.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.11.4.2 ENV.A20N_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.11.4.2 ENV.A20N_SUBGROUP. ORGANISM 2.11.4.2 ENV.A20N_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A20n 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A20n.. ACCESSION No information KEYWORDS No information. SOURCE clone A20n. ORGANISM clone A20n. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91443|g987748 BASE COUNT 87 a 67 c 106 g 73 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ....CGUUAC UC-GGAUUCA -UU-GGGU|G UAAA-GGGC- AGG-UAG-GC -G|-GC-UA- 1261 U-GU-AAG|U UGG---AGGU G-AAA-UC-C UA-AGG-C(- UC-A)A-CCU -UA-G-AAC- 1321 -UGCC-UUCA A-GAC-UGCA U-GGCUU-GA GGA-----UA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCCAGU- GUA-AGG(-G UGAAA)-UCU -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--AU-CC CUGACG-CUA AG-C------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------CU -CUCAG-CGC 1741 CG--UAA--- --GG-(UAA- ---C)C-CG- UUAA-GUGCU C|C|A-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s31 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s31. str. s31. ACCESSION No information KEYWORDS No information. SOURCE str. s31. str. s31. ORGANISM str. s31. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69335|g1181119 isolate_name= s31 BASE COUNT 91 a 74 c 102 g 72 t 4037 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |....G-C-- 1201 GAG-CGUUAC UC-GGAUUUA -UUGGGUG|U AAAA-GGGC- AGG-UAG-GC -C|-GC-CU- 1261 A-UC-AAG|U UGG---GGGU G-AAA-UC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAC- 1321 -UGCC-UUCA A-AAC-UGCA U-AGCUU-GA GGC-----UA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCCGGU- GUA-AGA(-G UGAAA)-UCU -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUA-- ---------- ---------- ---------G 1501 UCU--AG-CC CUGACG-CUA AG-C------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(-UU---)- ---------- ---------- ---------- -------ACC -CUCAG-CGU 1741 CG--CAA--- --GU-(UAA- ---C)A-CG- UUAA-GUGCU C|C|A-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A36o 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A36o.. ACCESSION No information KEYWORDS No information. SOURCE clone A36o. ORGANISM clone A36o. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91459|g987764 BASE COUNT 95 a 66 c 107 g 78 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |GGUGG-C-- 1201 AA--CGUUAC UC-GGAUUCA -UU-GGGU|G UAAA-GGGC- AAG-UAG-GC -G|-GU-CU- 1261 G-AU-AAG|U GAG---GGGU G-AAA-UC-C UG-CGA-C(- UC-A)A-UCG -CA-G-AAU- 1321 -UGCC-UUUC A-AAC-UAUC A-GACUU-GA GGC-----AG G-AA-GGGAA AAA-U|GGAA 1381 UU-CUCGGU- GUA-AGG(-G UGAAA)-UCU -GU-AGAU-A UC-GAGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-G)GCGA- -UUUUCUG-- ---------- ---------- ---------G 1501 UCC--UG-UC CUGACG-CUG AA-U------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GA(AUUA-G AUAC)-UCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGS ---------- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------GG -GUCAG-UGC 1741 CG--CM---- -----(KAA- ---C)G-CA- UUAA-GUGCU C|C|A-CCU- G-GGGACUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A37t 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91460 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 101 a 64 c 104 g 83 t 4024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GUGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -UU-GGGU|G UAAA-GGGU- AUG-UAG-GU -G|-UC-CG- 1261 A-AU-AAG|U UUU---CGGU G-AAA-UC-C UU-UCG-C(- UU-A)A-CGA -AA-G-AAC- 1321 -UGCC-GGAA A-AAC-UAUU U-GGAUU-GA GUU-----UG G-GA-GAGGA GAG-G|GGAA 1381 CU-CU-GGU- GUA-AAG(-G UGAAA)-UCU -GU-AGAU-A UC-AAGAGG- AACA-CCUG- 1441 -U-G-GC(-G AA-G)GCGU- -CUCUCUG-- ---------- ---------- ---------G 1501 CCC--AC-AA CUGACA-CUG AA-A------ -------UA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GC-GU-CUC -UG-UU---- ---------- 1681 -(UAU-AC)A ---------- ---------- ---------- -------GAG -GU....... 1741 .......... .....(.AA- ---C)G-CG- UUAA-GUGUC C|C|A-CCU- G-GGAAGUAC 1801 GUC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G39 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G39.. ACCESSION No information KEYWORDS No information. SOURCE clone G39. ORGANISM clone G39. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91291|g987039 BASE COUNT 97 a 64 c 105 g 80 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAUUAA -UU-GGGU|G UAAA-GGGC- AAG-UAG-GC -G|-UC-UU- 1261 G-AC-AAG|U UAG---GAGU G-AAA-UUCC UG-CAG-C(- UC-A)A-CUG -CA-G-AAC- 1321 -UGCU-UUUA A-AAC-UGUC A-AGAUU-GA GAC-----UG G-GA-GAGGA AAG-C|GGAA 1381 UU-CUCGGU- GUA-AGA(-G UGAAA)-UCU -GU-AGAU-A UC-GAGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCC--AG-UA CUGACG-CUG AA-U------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UU-UA)C ---------- ---------- ---------- --------CC -UUAGC-GCC 1741 GU--AA---- --GU-(UAA- ---C)A-CG- UUAA-GUGCU C|C|A-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s23 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s23. str. s23. ACCESSION No information KEYWORDS No information. SOURCE str. s23. str. s23. ORGANISM str. s23. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69327|g1181110 isolate_name= s23 BASE COUNT 95 a 62 c 100 g 81 t 4038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GUG--C-- 1201 NNN-NAUUAC UC--GAUUUA -UU-GGGU|G UAAA-GGGC- AAG-UAG-GC -G|-UC-UU- 1261 G-AC-AAG|U UAG---GAGA G-AAA-UC-C UG-CAG-C(- UC-A)A-CUG -CA-G-AAC- 1321 -UGCU-UUUA A-AAC-UGUU A-AGAUU-GA GAC-----UG G-GA-GAGGA GAG-U|GGAA 1381 UU-CUCGGU- GUA-AGA(-G UGAAA)-UCU -GU-AGAU-A UC-GAGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCC--AG-UU CUGACG-CUG AA-U------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-U-AUGA G--MA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CC -UUCAG-CGC 1741 CG--CAA--- --GU-(UAA- ---C)A-CG- UUAA-GUGCU C|C|A-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.12-FIBRO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.12 FIBROBACTER_PHYLUM. ACCESSION No information KEYWORDS No information. SOURCE 2.12 FIBROBACTER_PHYLUM. ORGANISM 2.12 FIBROBACTER_PHYLUM. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.12.1-FIB 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.12.1 FIBROBACTER_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.12.1 FIBROBACTER_SUBDIVISION. ORGANISM 2.12.1 FIBROBACTER_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.12.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.12.1.1 FIBROBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.12.1.1 FIBROBACTER_GROUP. ORGANISM 2.12.1.1 FIBROBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucMM4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. MM4. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. MM4. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62694 isolate_name= MM4 BASE COUNT 317 a 328 c 427 g 250 t 3054 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UNU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-CA 481 GG-AGC---- ---------- -------G-U GG-C-----U U--CCC-(-- --------GC 541 AU-------- -)-GGG---N AG-UU----G AC--AAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-NRCAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-NA 1021 --GG-GAA-- UA-AGGC--- --GUC-UU-( ------CUCG ---------) -GAG-AC--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-C-GA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-GC-AAG|C GGA---CUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUUC G-GAC-UGCA C-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-YA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -CCNGG-UAC 1741 CG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-RGU -UUAAUU-CG -(AWNNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGN-NU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNNU--- UU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----A---C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---NC ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NRG|G 2701 G-CW-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-NA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-N(G 2881 -CGA)GNCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucHM2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. HM2 ATCC 43856 (T). ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. HM2 ATCC 43856 (T). ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information REFERENCE 2 AUTHORS Montgomery,L., Flesher,B. and Stahl,D. TITLE Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and description of Fibrobacter intestinalis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 430-435 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43856 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62689 isolate_name= HM2 BASE COUNT 317 a 332 c 437 g 249 t 3041 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..NAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UNU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-CA 481 GG-AGC---- ---------- -------G-U GG-C-----U U--CCC-(-- --------GC 541 AU-------- -)-GGG---A AG-UU----G AC--AAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-GA 1021 --GG-GAA-- UA-AGGC--- --GUC-UU-( ------CUCG ---------) -GAG-AC--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-C-GA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-GC-AAG|C GGA---CUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUUC G-GAC-UGCA C-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACN-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNNU--- UU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----A---C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCN---- ---------- ---------- ----(---NN ---NA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-NN-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-NN-C NA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucMB4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. MB4. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. MB4. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62692 isolate_name= MB4 BASE COUNT 315 a 322 c 430 g 247 t 3062 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-NA 481 GG-AGC---- ---------- -------G-U GG-C-----U U--CCC-(-- --------GC 541 AU-------- -)-GGG---A AG-UU----G AC--AAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-NNCAAU-- GG-GG-(GAA A)-CCC-UNA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-NA 1021 --GG-GAA-- UA-AGRC--- --GUC-UU-( ------CUCG ---------) -GAG-AC--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-C-GA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-GC-AAG|C GGA---CUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUUC G-GAC-UGCA C-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----RGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -CCNGG-UAC 1741 CG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-RGN -NNAAUU-CG -(AANCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NGUU--- NU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----A---C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----RRG|G 2701 G-CN-CU-C- U-GGA-GA-G A-CU-G-CNG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-N(G 2881 -CGA)GNCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GNCUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-NC)-N CCA-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter sp. ORGANISM Fibrobacter sp. REFERENCE 1 AUTHORS Lin,C. and Stahl,D.A. TITLE reveal abundant and novel equine-associated populations Taxon-specific probes for the cellulolytic genus Fibrobacter JOURNAL Appl. Environ. Microbiol. 61, 1348-1351 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35548|g530880 BASE COUNT 307 a 329 c 425 g 235 t 3080 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........U UAAUGCC-CA 481 AG-GCG---- ---------- -------G-U GG-C-----C C---GC-(-- --------AU 541 G--------- -)-GG----G GG-UU----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-GA 1021 --GG-GAA-- UA-AGGC--- --UAC-UU-( ------UCCG ---------) -GAG-UA--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-U-GA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-GA- 1261 U-GC-AAG|C GGA---CUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC --G-G-ACC- 1321 -UGCA-GUCC G-GAC-UGCA C-CUCUU-GG AUA-----GU U-CA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-AA UCGACG-CUC AU-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-C-G -CG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -GCGGG-UAC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C A--CCC---- ---------- ---------- ----(---GC ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CC-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUA- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GG-AGG- GA-GU-GCUC -UAA-G-UCG 3121 U-GAU-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-C A-GC-GC-CU A-AAGC-AAG ACC....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucREH 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. REH9-1 ATCC 43857. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. REH9-1 ATCC 43857. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information REFERENCE 2 AUTHORS Montgomery,L., Flesher,B. and Stahl,D. TITLE Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and description of Fibrobacter intestinalis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 430-435 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43857 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62682 isolate_name= REH9-1 NB: Amann et al. incorrectly lists cc# as ATCC 53857 BASE COUNT 275 a 274 c 376 g 216 t 3235 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~........ ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------...C 541 AU-------- -)-NNG---G RG-UU----G AC--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GNA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-NA 1021 --GG-GAA-- UA-AGGC--- --AUC-GU-( ------UUCG ---------) -GCG-AU--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-N-GA G-AG--GAAG ---------C 1141 -ACCGGCA-A NCUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-AG- 1261 C-UC-AAG|C GGA---UUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-G-ACC- 1321 -UGCA-GUCC G-AAC-UGGG U-UUCUU-GG AUA-----GU U-CA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA UCGACG-CUC AU-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-NNN -CG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -GCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNNU--- UU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----A---C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCNGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-N AN-CCN---- ---------- ---------- ----(---GC ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|N 2701 G-CN-NU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UN -A-AGUC-CU NAU-G-GC-N CNNAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-N(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-N-AAAG -CC-G-UCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GACUCCG -UGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGNN- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucGC5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. GC5. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. GC5. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62688 isolate_name= GC5 BASE COUNT 320 a 326 c 431 g 255 t 3044 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UNU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CA (--GC----- ---------- ---------- 241 --------AA -)UG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCC---U -GCUC-G-GG 421 -AAU-AG-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--A UAAUACC-GG 481 AU-ACC---- ---------- -------G-U GG-G-----N U--CCU-(-- --------GC 541 AU-------- -)-AGG---G CC-UU----G AC--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GNA---- 661 ----GGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-GA 1021 --GG-GAA-- UA-AGGC--- --AUW-GU-( ------UUCG ---------) -GCU-AU--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-C-GA G-AG--GAAG ---------C 1141 -ANCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-AG- 1261 C-UC-AAG|C GGA---UUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-G-ACC- 1321 -UGCA-GUCC G-AAC-UGGG U-UUCUU-GG AUA-----GU U-CA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA UCGACG-CUC AU-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -CG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CN -NCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNNU--- UU-------- --GUA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UAC------- ----A---C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---NN---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CN-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-N(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-UCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucBL2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. BL2 ATCC 51215. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. BL2 ATCC 51215. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51215 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62685 isolate_name= BL2 BASE COUNT 320 a 331 c 438 g 255 t 3032 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-NN 481 GG-AGA---- ---------- -------G-U GG-C-----C U--UCC-(-- --------GC 541 AU-------- -)-GGA---A GG-UU----G AC--UAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-N A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-AU-GA 1021 --GG-GAA-- UA-AGGC--- --CNG-CN-( ------UUCG ---------) -GNC-GGG-- 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-UC-AAG|C GGA---UUGU A-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-CUC- 1321 -UGCA-GUCC G-AAC-UGGA U-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-A-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-GU-UC)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ANA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NGG|G 2701 G-CN-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucS85 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. S85 ATCC 19169 (T). ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. S85 ATCC 19169 (T). ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information REFERENCE 2 AUTHORS Montgomery,L., Flesher,B. and Stahl,D. TITLE Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and description of Fibrobacter intestinalis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 430-435 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19169 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62696 isolate_name= S85 BASE COUNT 341 a 357 c 458 g 272 t 2948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UCAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UGU-CU--U AUAC-AUGCN A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-CA 481 GG-AGA---- ---------- -------G-U GG-C-----C C--UCU-(-- --------GC 541 AU-------- -)-GGA---G GG-UU----G AC--UAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-AU-GA 1021 --GG-GAA-- UA-AGGC--- --CCG-CC-( ------UCCG ---------) -GGC-GGN-- 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-UC-AAG|C GGA---UUGU A-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-CUC- 1321 -UGCA-GUCC G-AAC-UGGA U-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-A-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-GU-UC)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-NN-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-UCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GA-AGG- GA-GU-NCUC -UAA-G-UCG 3121 U--------- ---------- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- --NC-GC-CU A-AAGC-AAG ACC-UU-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.succB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. B1 ATCC 51214. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. B1 ATCC 51214. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51214 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62684 isolate_name= B1 BASE COUNT 319 a 324 c 428 g 256 t 3049 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--GC----- ---------- ---------- 241 --------AA -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NG--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-NN 481 GG-AGA---- ---------- -------G-U GG-C-----N N--UCU-(-- --------GC 541 AU-------- -)-GGN---A NG-UU----G AC--UAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UNA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-AU-GA 1021 --GG-GAA-- UA-AGGC--- --CNG-CC-( ------UCCG ---------) -GGC-GGN-- 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-UC-AAG|C GGA---UUGU A-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-CUC- 1321 -UGCA-GUCC G-AAC-UNGA U-CUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CGC- A-CC-GU--A 1621 AAC-A-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-GU-UC)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AANCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NNUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---NA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CN-CU-C- N-GGA-GA-G A-CU-G-CCG --GG(-GA-C RA)-CNC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-NGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CAU-C(G 2881 -NGA)NAUG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-UCC- UCNGUUNGGA 2941 U-NGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucA3C 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. A3C ATCC 51219. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. A3C ATCC 51219. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51219 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62683 isolate_name= A3C BASE COUNT 320 a 325 c 431 g 253 t 3047 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG-CG-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-NA (--GN----- ---------- ---------- 241 --------AA -)UG-CNG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCA---U -AUCA-G-GA 421 -AAU-AC-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--U UAAUGUC-CA 481 GG-AGA---- ---------- -------G-U GG-C-----C A--GCU-(-- --------GC 541 AU-------- -)-GGC---U GG-UU----G AC--UAGA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-AU-GA 1021 --GG-GAA-- UA-AGGC--- --CNN-NN-( ------UCCG ---------) -GGC-GGG-- 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUNU UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-GA- 1261 U-UC-AAG|C GGA---UUGU A-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-CUC- 1321 -UGCA-GUCC N-AAC-UGAA U-NUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA UCGACG-CUG AG-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-A-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-GU-UC)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--UA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCN 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG...(.... ...).CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CC-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C NA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -N-AGUC-CU CAU-G-GC-C CUUAN-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-NAU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-UCC- UCNGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter sp. ORGANISM Fibrobacter sp. REFERENCE 1 AUTHORS Lin,C. and Stahl,D.A. TITLE Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations JOURNAL Appl. Environ. Microbiol. 61, 1348-1351 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35547|g530881 BASE COUNT 287 a 319 c 423 g 243 t 3104 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........G UAAUGCC-GG 481 AU-AUU---- ---------- -------G-U GG-C-----G C--CCU-(-- --------UC 541 AU-------- -)-GGG---U CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAA---- 661 ----GGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(U -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GA-UA 1021 --GG-GAA-- UA-AGGC--- --CUU-CU-( ------UUCG ---------) -GGA-GG--- 1081 ---------- ---------U U-GA-AUGU- A-CCA-U-UA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-AC- 1261 U-GC-AAG|C GGU---CUGU U-CAA-UC-A CG-GGG-C(- CC-A)A-CCC -CG-U-ACC- 1321 -AGCA-GACC G-GAC-UGCC G-UUCUU-GG AUA-----GU U-CA-GGGGA AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 GGA--CU-CA UCGACG-CUG AU-G------ -------CU- C-GAAA-GU- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------G|G -GU-GU-CCG -GG-C----- ---------- 1681 -(--G-UA)- ---------- ---------- ---------- --------GU -CCGGG-UAC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -UAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAACG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UC-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- GG-------- ----GA--C| GUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--CUA- 2281 UG--UUGC-C CG-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CU-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-C-G-C- AA-CCC-G(G 2881 -UGA)CGGG- ---------- GA-GCCAA-U CCU-U-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GG-AGG- GA-GU-GCUC -GAA-G--UG 3121 C-C------- ---------- ---------- ---------- -----(---- -GUCC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GC-GC-CU A-AAG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.sucMC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter succinogenes str. MC1 ATCC 51218. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter succinogenes str. MC1 ATCC 51218. ORGANISM Fibrobacter succinogenes. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE phylogenetic and habitat-based classification Diversity among Fibrobacter isolates: Towards a JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51218 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62693 isolate_name= MC1 BASE COUNT 315 a 335 c 437 g 245 t 3044 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGC-G -UNU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCG---C -AUAU-U-GG 421 -GAU-AG-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--A UAAUACC-GA 481 AU-AAC---- ---------- -------G-U GG-C-----C C--CGG-(-- --------AC 541 AU-------- -)-CCG---G GG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CN| -G-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-NNA UGCA|-GCAA CGCC-AC-GU 961 G-U-GG-G-A A-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GU-GA 1021 --GG-GAA-- UA-AUAC--- --GCG-UC-( ------UUCG ---------) -GGC-GCG-- 1081 ---------- -------N-G G-GA-AUGU- A-CCU-C-GA A-AG--GAAG ---------C 1141 -ACCGGCN-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UG- 1261 U-UC-AAG|C GGA---UUGU A-CAA-UA-C CG-GGG-C(- CC-A)A-CCC -CG-N-ACC- 1321 -UGCA-GUCN N-AAC-UGGA C-AUCUU-GG AUA-----GU U-CA-GGGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA UCGACG-CUG AG-G------ -------CU- C-GAAA-GC- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------G|G -GU-GU-CCG -GG-G----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- --------CC -CCGGG-UAC 1741 CG--CA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---GAUCG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GAU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C AN-CCC---- ---------- ---------- ----(---GC ---NN---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CN-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-C-G-C- AA-CGC-N(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- N)-GNCUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCN-CGGUG- AAUNC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.intJG1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter intestinalis str. JG1. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter intestinalis str. JG1. ORGANISM Fibrobacter intestinalis. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62690 isolate_name= JG1 BASE COUNT 323 a 335 c 442 g 246 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAN-GC-- UGGU-GGA-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGC----- ---|-CG--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCNG---C -AUUC-C-GG 421 -AAC-AA-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--C UAAUGCN-GG 481 GA-GCC---- ---------- -------G-U GG-C-----G G--UCC-(-- --------AC 541 AU-------- -)-GGG---C CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CUCC-AC-GU 961 G-U-GG-G-A U-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GA-GA 1021 --GG-GAA-- UA-AAGC--- --GAU-CU-( ------UUCG ---------) -GGA-UU--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-U-UA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CC- 1261 G-CC-AAG|C GUU---CUGU G-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-ACC- 1321 -CGCA-GAGC G-AAC-UGAC G-GUCUU-GA GUA-----GU U-CA-GAGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-AA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GU-GU-CCC -GG-G----- ---------- 1681 -(-GC-GA)- ---------- ---------- ---------- --------CC -CGGGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---AAUCG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GGU-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUC- 2281 AG--UUGC-N GN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CU-CU-Y- U-GGA-GA-G A-CU-G-CNG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAUG GGU-A-G-C- GG-GGU-C(G 2881 -CGA)GACC- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-CCC- UCNGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.intLH1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter intestinalis str. LH1. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter intestinalis str. LH1. ORGANISM Fibrobacter intestinalis. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62691 isolate_name= LH1 BASE COUNT 324 a 334 c 441 g 245 t 3032 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGU-GGA-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGC----- ---|-CG--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCNG---C -AUUC-C-GG 421 -AAC-AA-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--C UAAUGNN-GG 481 GA-GCC---- ---------- -------G-U GG-C-----G G--UCC-(-- --------AC 541 AU-------- -)-GGG---C CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-G ACG)--GCCN -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-NGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CUCC-AC-GU 961 G-U-GG-G-A U-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GA-GA 1021 --GG-GAA-- UA-AAGC--- --GAU-CU-( ------UUCG ---------) -GGA-UU--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-U-UA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CC- 1261 G-CC-AAG|C GUU---CUGU G-CAA-UC-C CG-GGG-C(- CC-A)A-CCC -CG-G-ACC- 1321 -CGCA-GAGC G-AAC-UGAC G-GUCUU-GA GUA-----GU U-CA-GAGGC AGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GGA--CU-NA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-AA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GU-GU-CCC -GG-G----- ---------- 1681 -(-GC-GA)- ---------- ---------- ---------- --------CC -CGGGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---AAUCG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GGU-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUC- 2281 AG--UUGC-N GN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CU-CU-C- U-GGA-NA-G A-CU-G-CCG --GG(-GA-C AA)-CCN-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAUG GGU-A-G-C- GG-GGU-C(G 2881 -CGA)GACC- ---------- GA-GCCAA-U CCU-C-AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.intDR7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter intestinalis str. DR7 ATCC 43855. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter intestinalis str. DR7 ATCC 43855. ORGANISM Fibrobacter intestinalis. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information REFERENCE 2 AUTHORS Montgomery,L., Flesher,B. and Stahl,D. TITLE Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and description of Fibrobacter intestinalis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 430-435 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43855 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62687 isolate_name= DR7 BASE COUNT 306 a 351 c 446 g 234 t 3039 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GG-- NGGU-NGA-G -UNU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGC----- ---|-CG--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -GC-GUAAG- CNA--UCU-G C-CCCG---C -AUUC-C-GG 421 -AAC-AA-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--C UAAUGCC-GG 481 GA-GCC---- ---------- -------G-U GG-C-----N G--CCC-(-- --------GC 541 AU-------- -)-GGG---C CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-NG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CUCC-AC-GU 961 G-U-GG-G-A U-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GA-GA 1021 --GG-GAA-- UA-AAGC--- --GGC-CU-( ------UUCG ---------) -GGG-CN--- 1081 ---------- -------G-U U-GA-AUGU- A-CCU-U-UA A-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-N-C-GAGG |-GGUG-C-- 1201 NAG-CGUNGU UC-GGAAUCN -CU-GGGC|G NNNA-GGGA- GCG-UAG-GC -G|-GN-CC- 1261 G-CC-NAG|C GUU---CUGU G-CAA-UC-C CG-GGG-C(- CC-N)A-CCC -CN-G-ACC- 1321 -CGCA-GAGC G-AAC-UGGC G-GCCUU-GA GUG-----GU U-CA-GAGGC CGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCGGCUG-- ---------- ---------- ---------G 1501 GGA--CC-CA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-AA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GU-GU-CCC -GG-G----- ---------- 1681 -(-GC-GA)- ---------- ---------- ---------- --------CC -CGGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CN -(ANNNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- ---------G ---AAUCG-- -CC----GCN 1981 -NNN-A--(- GAGA-)-UCG -C-NGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GGU-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C GN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CU-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -N-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAUG GGC-A-G-C- GG-GGC-C(G 2881 -CGA)GGCC- ---------- GA-GCCAA-U CCC-C-AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.intNR9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter intestinalis str. NR9 ATCC 43854 (T). ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter intestinalis str. NR9 ATCC 43854 (T). ORGANISM Fibrobacter intestinalis. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information REFERENCE 2 AUTHORS Montgomery,L., Flesher,B. and Stahl,D. TITLE Transfer of Bacteroides succinogenes (Hungate) to Fibrobacter gen. nov. as Fibrobacter succinogenes comb. nov. and description of Fibrobacter intestinalis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 430-435 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43854 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62695 isolate_name= NR9 BASE COUNT 304 a 359 c 455 g 231 t 3027 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GG-- UGGU-GGA-G -UGU-CU--U AUAC-AUGCN A-GUC-GAGC 121 G--AG----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGC----- ---|-CG--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -GC-GUAAG- CAA--CCU-G C-CCCG---C -AUUC-C-GG 421 -AAC-AA-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--C UAAUGCC-GG 481 GA-GCC---- ---------- -------G-U GG-C-----G C--CCC-(-- --------GC 541 AU-------- -)-GGG---G CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---G-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-NAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CUCC-AC-GU 961 G-U-GG-G-A U-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GG-AU 1021 --GG-GAA-- UA-AGGC--- --GCC-GC-( ------CACG ---------) -GCG-GN--- 1081 ---------- -------G-U U-GA-AUGU- A-CCA-U-UA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CNCGGUN-A) U-N-C-GAGG |-GGUG-C-- 1201 NAG-CGUNNU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CC- 1261 G-CC-AAG|C GUU---CUGU G-CAA-UC-C CG-GGG-C(- CC-N)A-CCC -CG-G-ACC- 1321 -CGCA-GAGC G-AAC-UGGC G-GCCUU-GA GUA-----GU C-CA-GAGGC CGG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCGGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CG-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GC-GU-UCC -GG-G----- ---------- 1681 -(-GC-GA)- ---------- ---------- ---------- --------CC -CGGGG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGN-NN-NUG ACA-UG|--- ---------G ---AAUCG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-CGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GGU-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-C GN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-CU-CU-C- U-GGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAUG GGC-A-G-C- GG-GGC-C(G 2881 -CGA)GGCC- ---------- GA-GCCAA-U CCC-C-AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fib.intC1a 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fibrobacter intestinalis str. C1a. ACCESSION No information KEYWORDS No information. SOURCE Fibrobacter intestinalis str. C1a. ORGANISM Fibrobacter intestinalis. REFERENCE 1 AUTHORS Amann,R.I., Lin,C.-M., Key,R., Montgomery,L. and Stahl,D.A. TITLE Diversity among Fibrobacter isolates: Towards a phylogenetic and habitat-based classification JOURNAL Syst. Appl. Microbiol. 15, 23-31 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62686 isolate_name= C1a BASE COUNT 305 a 345 c 450 g 231 t 3045 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..CAAUGA AGAGUU(U-G A)U-NCU|-G 61 GCUCAG-AAC -GAAN-GC-- UGGU-GGA-G -UGU-CU--U AUAC-AUGCA A-GUC-GAGC 121 G--AG----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGC----- ---|-CG--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -GC-GUAAG- CAA--CCU-G C-CCCG---C -AUUC-C-GG 421 -AAC-AA-CC G--------- ------UG-- C(-CAAC-)G -CGCG-G--C UAAUGCC-GG 481 NA-GCC---- ---------- -------G-U GG-C-----N C--NCC-(-- --------GC 541 AU-------- -)-GGG---G CG-UU----G AC--GAAA-- ---GA----- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -----U--C- G--AUG---- 661 ----CGGG-- AUG---G-|G CUUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-NAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CUCC-AC-GU 961 G-U-GG-G-A U-GAA--G-C AU(--UU-CG --)GU-GUGU AAA--CCAC| UGUC-GG-AU 1021 --GG-GAA-- UA-AGGC--- --GCC-GC-( ------CACG ---------) -GCG-GN--- 1081 ---------- -------N-U U-GA-AUGU- A-CCA-U-UA G-AG--GAAG ---------C 1141 -ACCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CC- 1261 G-CC-AAG|C GUU---CUGU G-CAA-UY-C CG-GGG-C(- CC-A)A-CCC -CG-G-ACC- 1321 -CGCA-GAGC G-AAC-UGGC G-GCCUU-GA GUA-----GU C-CA-GAGGC CGG-C|GGAA 1381 UU-CNUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCGGCUG-- ---------- ---------- ---------G 1501 GGA--CU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GC-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CG-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GC-GU-UCC -GG-G----- ---------- 1681 -(-GC-GA)- ---------- ---------- ---------- --------CC -CGGGG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGN-NU-UUG ACA-UG|--- ---------G ---AAUCG-- -CC----GCG 1981 -GCG-A--(- GAGA-)-UCG -C-NGUU--- UU-------- --GCA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UGC------- ----AA--C| GGU-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UU--UCC- 2281 AG--UUGC-N GN-CCC---- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NGG|G 2701 G-CU-CU-C- U-GGA-GA-G A-CU-G-CNG --GG(-GA-C AN)-CCN-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-UC -CU--GGGC- 2821 C-ACA-CA-C GUG--CNACA AUGGG-C-GG -UA--CAAUG GGC-N-N-N- GG-GGC-N(G 2881 -CGA)GNCC- ---------- GA-GCCAA-U CCC-C-AAAG -CC-G-CCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-A CCA-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.12.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.12.1.2 ENVIRONMENTAL_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.12.1.2 ENVIRONMENTAL_RELATIVES. ORGANISM 2.12.1.2 ENVIRONMENTAL_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-12A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11952 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 111 a 96 c 111 g 107 t 3951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)......GA 1921 A-CCUUA-CC UGG-AC-UUG ACA-GU|--- ---------U ---AGUG--- ACC----GGU 1981 -CUG-U--(- GAAA-)-GCA -G-UUCAU-- UU-------C UUAGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCUAAG---- ----AA---| CAC-UA-UCA |---C|A--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGU|G 2701 G-GA-CU-C- U-AGA-AA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-U CG-ACG--UC -A-AGUC-AG UAU-G-UC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUA--AUACA AUGGA-A-UA -UA--CAAAG GGU-U-G-C- AA-AUC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UU-U-UCC- UCAGUUCAGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.49-10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11989 (bases 1 to 405) library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA BASE COUNT 176 a 155 c 205 g 161 t 3679 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAGG |-GGUG-C-- 1201 UAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-UC-CU- 1261 G-AU-AAG|C AUU---GAUU G-AAA-UC-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAC- 1321 -UGGU-CAGU --AAC-UGUC A-GGAUA-GA GUU-----UG G-UA-GAGGA AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCU(-G UGAAA)-UGC -GU-AGAU-A UC-GUGAGG- AACA-UCGA- 1441 -C-N-KC(-B AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 GCC--AA-AU CUGACG-CAA UG-G------ -------UA- C-GAAA-UC- GU-GGG-UA- 1561 GC-AAC-CA- -GG(AUUA-G AACC)-CUG- ----UGUN-S -C----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------U|G -GU-UC-CUG .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 ...CUUA-.C ...-..-.UG ACU-UG|--- ---------U ---CAUC--- -AA-----UC 1981 -U-A-G--(- GAAA-)-CUC -A-GGCC--- UG-------- -CGAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUCAAA---- ----AG---| CAC-UG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CAGG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---U(---UC ---GGC--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-C-U --GG(-GA-U AA)-CCA-G- -GAGA-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG UAU-G-UC-C CUUAU-C-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG ----A-G-B- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GCU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR406 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Gordon,D.A. and Giovannoni,S.J. TITLE Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans JOURNAL Appl. Environ. Microbiol. 62, 1171-1177 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34043|g1045475 BASE COUNT 414 a 344 c 456 g 337 t 2825 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-AAGG 121 A--------- -----GAAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU-CU (--UU----- ---------- ---------- 241 --------CG -)AG-AAAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAUUAA---- ---|------ ACUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCUA---G -AGAU-U-GG 421 -GAU-AA-CA C--------- ------CA-- G(-GAAA-)C -CGGU-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------G-C AG-C--G-GA ---UCC-(-- --------UU 541 AG-------- -)-GGA---U ACAGU----U GU--UAAA-- ---GCGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| -CUCGC--A- ---CUU---- 661 ----UAGG-- AUG---G-|G CCUGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-CC-G-A U-GAA--G-C UU(--CU-AG --)GA-GCGU AAA--GGUC| UGUC-GU-AA 1021 --GG-GAA-- GA-AAAA-UU --UGA-AUG( U----UAAUA -----G---) UGUU-UG-AA 1081 ---------- -------U-C U-GA-CGGU- A-CCU-U-AC A-AG--AAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- CCG-CAG-GC -U|-UU-UC- 1261 A-AU-AAG|U CAC---UUGU U-AAA-UC-C AU-CGG-C(- UU-A)A-CCA -AU-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU G-AAAUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGACA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------U|G -GU-GU-CGG -GG-GA---- ---------- 1681 -(UUC-GA)C ---------- ---------- ---------- -------CCC -UUCGG-UAC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAACUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--C 1861 C-A--CA-AC GGGGGG-A-C A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|--- --------UU ---CAUG-A- -AA----GCU 1981 -CUG-U--(- GAAA-)-GCA -G-AGCCC-- UCU-GC---- --GAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUC------- AA-AGA---| CAU-GU-UUA |---C|A--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCU --AG(-GA-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG UAU-G-UC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-U-GG -UA--CAAUG GGC-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCCA-AAAA -CC-A-ACC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGA A--GU-CAG- UA-GU-ACCC -AAA-U-CGA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-CG-UU A-AGGU-AAN ACU-GG-UA- ACU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OCS307 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone OCS. ACCESSION No information KEYWORDS No information. SOURCE clone OCS. ORGANISM clone OCS. REFERENCE 1 AUTHORS Gordon,D.A. and Giovannoni,S.G. TITLE Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific Oceans JOURNAL Appl. Environ. Microbiol. 62, 1171-1177 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41450|g1150733 BASE COUNT 393 a 331 c 443 g 317 t 2892 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-AAGG 121 A--------- -----GAAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAUUAA---- ---|------ ACUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCUA---G -AGAU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------G-C AG-C--G-GA ---UCC-(-- --------UU 541 UG-------- -)-GGA---U AC-AG----U UG--UUAA-- ---AGUGGG- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| -CCCAC--A- ---CUU---- 661 ----UAGG-- AUG---G-|G CCUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-G-C-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-NGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-CC-G-A U-GAA--G-C UU(--CU-AG --)GA-GCGU AAA--GGUC| UGUC-GU-AA 1021 --GG-GAA-- GA-AAAG-UU --UGG-AUG( U----UAAUA -----A---) UGUC-CG-AA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-AC A-AG--AAAG ---------C 1141 -ACCGGCU-A ACUUA-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-UAGG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- CCG-UAG-GC -G|-UC-UC- 1261 A-AU-AAG|U CAC---UUGU U-AAA-GA-C AC-CGG-C(- UU-A)A-CCG -GU-G-GCC- 1321 -UGCA-UGUG A-AAC-UGUU G-AGAUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGACA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------U|G -GU-GU-CGG -GG-GA---- ---------- 1681 -(UUC-GA)C ---------- ---------- ---------- -------CCC -UUCGG-UAC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAACUAC 1801 GAC-C---(G CAA)---G-G UU-GANACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|--- --------UC ---UAUG-A- -AA----GCU 1981 -UUG-U--(- GAAA-)-GCA -A-AGUCC-- UCU-GC---- --GAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUC------- AA-AGA---| CAU-AA-UUA |---C|A--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCU --GG(-GA-U AM)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG UAU-G-UC-C C-UAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-U-GG -UA--CAAUG GGC-U-G-C- GA-AAC-C(G 2881 -CAA)GGUG- ---------- AA-GNCAA-U CCCCA-AAAA -CC-A-ACC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G NCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGA A--GU-CAG- UA-GU-ACCC -GAA-U-CGG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-CG-UU A-AGGU-AAG ACU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-12B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11953 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 114 a 98 c 116 g 102 t 3946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)......GA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- -------U-U ---UAUG--- AAA----GCU 1981 -UUG-U--(- GAAA-)-GCA -A-AGGCCU- UC------UU GCGAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUCAAA---- ----GA---| CAU-AA-UUA |---C|A--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAG-GA-G A-CU-G-CCU --GG(-GA-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG UAU-G-UC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--UUACA AUGGU-U-GG -UA--CAAUG GGU-A-G-C- GA-AAC-C(G 2881 -CAA)GGUG- ---------- AA-GCCAA-U CCCCA-AAAA -CC-A-ACC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.12.2-ACI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.12.2 ACIDOBACTERIUM_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.12.2 ACIDOBACTERIUM_SUBDIVISION. ORGANISM 2.12.2 ACIDOBACTERIUM_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68468 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 262 a 241 c 355 g 209 t 3309 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAA-- ---|------ AGCG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CCU-(-- --------GU 541 GA-------- -)-AGG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUG---- 661 ----AAAG-- AGG---A-|G UCCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GG- UGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----AC-A-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-C CC(--CU-CG --)GG-GUGU AAA--GCUC| UUUC-GG-CA 1021 --GG-GAC-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--GAAG ---------C 1141 -UGCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCAG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GUG-UAG-GC -G|-GC-GC- 1261 U-CU-AAG|U UUG---GUGU G-AAA-UC-U CU-CGG-C(- UU-A)A-CUG -GG-A-GGG- 1321 -UGCG-CCGG A-AAC-UGGA G-UGCUC-GA ACG-----UG G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -C-G-GU(-G UA-G)ACGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-UG UUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -GU-GU-CGG -CC-A----- ---------- 1681 -(UUC-AG)U ---------- ---------- ---------- --------UG -GUCGG-UGC 1741 CA--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UCG AAC-GG|-C- ---------U ---GCAG--- ACC----GGU 1981 -GGU-A--(- GAAA-)-UAU -C-GCCU--- UU-------- ----C----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A---| CUG-UA-GUC |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC...... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68466 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 259 a 247 c 353 g 204 t 3313 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-A C-CUUU---A -GUUG-G-GG 421 -AAU-AA-CU C--------- ------UG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCU-(-- --------GA 541 GA-------- -)-AGG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----NN--N- N--CUG---- 661 ----AAGA-- AGG---A-|G CCCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AGC-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----AC-A-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-AAC-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAC ---------G 1141 -UGCGGCU-A ACUAC-CUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCAG-C-- 1201 AAG-CUUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GUG-UUG-GC -G|-GU-GC- 1261 U-CU-AGU|U CGA---UUGU G-AAA-UC-U CC-CGG-C(- UU-A)A-CUG -GG-A-GGG- 1321 -UGCG-GCGG A-AAC-UGGA G-UGCUC-GA GCG-----UG G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCUG- 1441 -U-G-GU(-G UA-G)ACAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AG CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -GU-GU-CGG -CC-A----- ---------- 1681 -(UUC-AG)U ---------- ---------- ---------- --------UG -GUCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UCG AAC-GG|-C- ---------U ---UCAG--- ACG----GCU 1981 -GGU-G--(- GAAA-)-CAC -C-GGCU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CUG-GA-GUC |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC...... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68467 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 260 a 232 c 349 g 201 t 3334 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-A C-CUCU---U -AGUG-G-GG 421 -AAU-AA-CU C--------- ------UG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----GAAA-- ---GUC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GA--C- G--CUG---- 661 ----AGAG-- AGG---A-|G CCCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-AU- AGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----AC-A-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCNA CGCC-GC-GU 961 G-A-GY-G-A U-GAA--G-C CC(--UU-AG --)GG-GUGU AAA--GCUC| UUUC-GG-CA 1021 --GG-GA--- ---------- ---------( -----AGAUG G--------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCU-G-CA G-AA--GCAG ---------C 1141 -UGCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCAU-C-- 1201 GAG-CGUUGU UC-GGAGUUA -CU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GU-UG- 1261 U-UU-AAG|U UUG---GUGU G-AAA-UC-U CC-CGG-C(- UC-A)A-CUG -GG-A-GGG- 1321 -UGCG-CCGA A-UAC-UGAG C-GACUA-GA GUG-----CG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GU(-G UA-G)ACGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC A--UA-UU-- -------U|G -GU-GU-GGG -CA-G----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------CU -GUCUG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUAUG C|C|G-CCU- G-GGGAGUAC 1801 AGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UCG A-A-CG|-G- ---------C ---UUCCC-- AAC----GGA 1981 -GGU-G--(- GAAA-)-CAC -C-UUUA--- CC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG--G| UGG-AG-UCG |----|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-C.... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC101 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68469 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 110 a 101 c 143 g 65 t 3957 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAA-- ---|------ AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-A C-CUCU---U -AGUG-G-GG 421 -AAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUG---- 661 ----AGAG-- AGG---A-|G CCCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-AG- AGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----AC-A-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GC-G-A U-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--GCUC| UUUC-GG-CA 1021 --GG-GAC-- G......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC103 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68465 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 126 a 118 c 151 g 77 t 3904 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAA-- ---|------ AGUG-GCGA- 361 -C-CG-GG-U GAGU---AAC -AC-GUGAC- CAA--UCU-A C-CCUC---G -AGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CU-U--U--G G--AAC-(-- --------CC 541 AG-------- -)-GUU---C CG-AU----G AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----GAGG-- AGG---A-|G GUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- AGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GC-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-U CC(--CU-UG --)GG-ACGU AAA--CUCC| UUUC-GA-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acbt.capsl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidobacterium capsulatum str. 161. ACCESSION No information KEYWORDS No information. SOURCE Acidobacterium capsulatum str. 161. ORGANISM Acidobacterium capsulatum. REFERENCE 1 AUTHORS Hiraishi,A., Kishimoto,N., Kosako,Y., Wakao,N. and Tano,T. TITLE Phylogenetic position of menaquinone-containing acidophilic chemo-organotroph Acidobacterium capsulatum JOURNAL FEMS Microbiol. Lett. 132, 91-94 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26171|g452161 isolate_name= 161 BASE COUNT 350 a 339 c 452 g 277 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -CAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 A--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---ACC-(-- --------CA 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--C- G--CUU---- 661 ----GAGG-- AGG---G-|G GUCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AG- UGA------- -----UC-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGC ----GC-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCG-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-U CU(--CU-UG --)GG-ACGU AAA--CUCC| UUUC-GA-UC 1021 --GG-AAC-- GA-------- ---------( ------UUA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAA-CGUUGG UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- CCG-UAG-CG -G|-GU-CG- 1261 G--U-AAG|U UUG---AUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-GUC- 1321 -UGCA-UCGA A-AAC-UGCC --GGCUU-GA GUG-----UG G-GA-GAGGU GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UNC -GU-AGAU-A UC-GGAAGG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-CU--A 1621 AAC-G-AUGA U--CG-CU-- -------U|G -GU-GU-GGC -GG-GU---- ---------- 1681 -(ACC-CA)A ---------- ---------- ---------- -------UCC -CGUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UCG AAA-UG|--- ---------U ---AGUGG-- -AC----CGG 1981 -GGU-A--(- GAAA-)-UAU -C-CCUU--- CC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG--C| UGC-UA--UA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCC- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-GGU-GA-G A-CC-G-CCU --CG(-GA-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAC CGC-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGGAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGCUUG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --UCA-CGAA A--GU-GGG- UC-GU-ACUA -GAA-G-CGG 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-U--CC A-AGGU-GUG AUU-CA-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68464 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 252 a 239 c 342 g 179 t 3364 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAN -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGA- 361 -C-CG-GG-U GAGU---AAC -AC-GUGAC- UAA--CCU-G C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CU-U--C--G G--AUC-(-- --------GG 541 AA-------- -)-GAU---C UG-UG----G AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--C- G--CUU---- 661 ----GAGG-- AGG---G-|G GUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- AGA------- -----UC-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGC ----GC-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-C CC(--UU-UG --)GG-GCGU AAA--CUCC| UUUC-GA-CC 1021 --GG-GAC-- G--------- ---------( ------AUAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-UG G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GC- 1261 G-GU-AAG|U CAC---CUGU G-AAA-CC-U CU-GGG-C(- UU-A)A-CUC -AG-A-GCC- 1321 -UGCA-GGCG A-AAC-UGCC G-UGCUG-GA GUG-----UG G-GA-GAGGU GCG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CGCACUG-- ---------- ---------- ---------G 1501 ACC--AC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------U|G -GU-GU-GUC -GG-G----- -U-------- 1681 -(ACC-AA)U C--------- ---------- ---------- ---------C -CGCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UCG AAG-CG|--- ---------C ---AGUGG-- -AC----CGG 1981 -GAU-A--(- GGAA-)-AUA -U-CCCU--- UU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AU---| -GC-UG--CG |---G|A--G 2161 GU........ ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC22 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68463 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 253 a 235 c 329 g 192 t 3367 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -CAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGA- 361 -C-CG-GG-U GAGU---AAC -AC-GUGAC- UAA--CCU-A C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 AA-------- -)-GAU---- ---------- ----CAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----GAGG-- AGG---G-|G CUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GG- AGA------- -----UC-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGC ----GC-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-U CC(--CU-CG --)GG-ACGU AAA--CUCC| UUUC-GA-CC 1021 --CG-GAA-- G--------- ---------( ------AUAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CGG-G-UG G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GC- 1261 G-GU-AAG|U CAC---CUGU G-AAA-UC-U CC-UGG-C(- UC-A)A-CUG -GG-A-GCU- 1321 -UGCA-GGCG A-AAC-UGCC G-UGCUG-GA GUG-----UG G-GA-CAGGU GCG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-ACAC-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGGGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-AUUU--- -C-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- U......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC42 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68462 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 122 a 113 c 153 g 80 t 3908 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-NNU -NAAC-NC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGUAC-- ---|------ AGUG-GCGA- 361 -C-CG-GG-U GAGU---AAC -AC-GUGAC- CAA--CCU-G C-CCUC---G -AGUG-G-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CU-U--C--G G--AAU-(-- --------GC 541 GA-------- -)-AUU---C UG-UG----G AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----GAGG-- AGG---G-|G GUCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GG- AGA------- -----UC-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGC ----GC-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-U CC(--CU-UG --)GG-ACGU AAA--CUCC| UUUC-GA-CC 1021 --CG-GAA-- G--------- ---------( ------AUAC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CGG-G-UG G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13-SPIRO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13 SPIROCHETES_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.13 SPIROCHETES_AND_RELATIVES. ORGANISM 2.13 SPIROCHETES_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.1-SER 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.1 SERPULINA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.13.1 SERPULINA_SUBDIVISION. ORGANISM 2.13.1 SERPULINA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyody3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. AN 174:92. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. AN 174:92. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14931|g559789 nat_host= Sus scrofa isolate_name= AN 174:92 BASE COUNT 389 a 297 c 429 g 319 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-GGGG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -C-UGGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUU-AG AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUA-CGUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 265 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 265 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14923|g559781 nat_host= Sus scrofa isolate_name= C 265 (group III) BASE COUNT 389 a 298 c 427 g 319 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GU----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C C)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyody5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. B78. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. B78. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14930|g559788 nat_host= Sus scrofa isolate_name= B78 BASE COUNT 389 a 297 c 428 g 319 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 520:93 (group II). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 520:93 (group II). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14934|g559792 nat_host= Sus scrofa isolate_name= AN 520:93 (group II) BASE COUNT 389 a 297 c 428 g 319 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 26:93 (group II). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 26:93 (group II). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14916|g559774 nat_host= Sus scrofa isolate_name= AN 26:93 (group II) BASE COUNT 389 a 299 c 428 g 317 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyodR1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. R1. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. R1. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Jensen,N.S., Stanton,T.B. and Swayne,D.E. TITLE Identification of the swine pathogen Serpulina hyodysenteriae in rheas (Rhea americana) JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D.J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23035|g786281 isolate_name= R1 BASE COUNT 397 a 305 c 440 g 321 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -NCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGNC-GUAC C(GGA-A)GG UGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyoNIV 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. NIV-1. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. NIV-1. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Jensen,N.S., Stanton,T.B. and Swayne,D.E. TITLE Identification of the swine pathogen Serpulina hyodysenteriae in rheas (Rhea americana) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23036|g786282 nat_host= Rhea americana isolate_name= NIV-1 BASE COUNT 396 a 303 c 435 g 318 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -NCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyody6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. 2818.5. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. 2818.5. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23029|g786283 Former RDP Sids: str.2818_5 isolate_name= 2818.5 BASE COUNT 401 a 308 c 439 g 321 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUNCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AACG-GCGA- 361 -N-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -ACAUCUG-- ---------- ---------- ---------G 1501 NNA--UU-UA UCGACG-CUG AN-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGN A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGU....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyody7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. PWS/A. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. PWS/A. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23033|g786285 Former RDP Sids: str.PWS_A isolate_name= PWS/A BASE COUNT 397 a 304 c 432 g 319 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GAU-G -CGU-CU--U AAGC-AUNCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AACG-GCGA- 361 -N-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-N C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -ACAUCUG-- ---------- ---------- ---------G 1501 NNA--UU-UA UCGACG-CUG AN-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGC A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGU....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyoB78 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. B78. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. B78. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Stanton,T.B., Jensen,N.S., Casey,T.A., Tordoff,L.A., Dewhirst,F.E. and Paster,B.J. TITLE Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula, gen. nov. as Serpula hyodysenteriae comb. nov. and Serpula innocens, comb. nov JOURNAL Int. J. Syst. Bacteriol. 41, 50-58 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57743|g175936 isolate_name= B78 NB: genus name changed from Serpula to Serpulina BASE COUNT 367 a 286 c 407 g 315 t 3001 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AGUAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|- CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-N ACUNC-GUG( CCA--GCNGC CGNNNUN-N) U-N-C-GUAG |-GAGG-C-- 1201 NAA-CGUUGC UC-GGAUUUN -CU-GGGC|G UNAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-NCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UN-U----- ---------- 1681 -(-UU-NA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 NG--UA---- --GC-(UNA- ---C)G-UC- UUNA-GUGUN C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--NN-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-U-G AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ANA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--NNU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC NA)-GUA-G- -GAGG-A-AG 2761 G-UN-GGN-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACN-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UAG- UU-UU-ACCU -GAA-G-U.. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 983:90 (group II). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 983:90 (group II). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14933|g559791 nat_host= Sus scrofa isolate_name= AN 983:90 (group II) BASE COUNT 390 a 298 c 426 g 318 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GNCUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UA- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C1. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C1. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23030|g786278 Former RDP Sids: str.chckC1 isolate_name= C1 BASE COUNT 377 a 288 c 412 g 315 t 2984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U UU----U--G N--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GUGA--- ---)------ ---------| ----UC--C- N--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( AU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GC-U 901 GAG-AAUCUU C-CNCAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAU- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUU AA)-GUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -GGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGNCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyodys 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. B204 ATCC 31212. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. B204 ATCC 31212. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 31212 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57741 isolate_name= B204 BASE COUNT 403 a 313 c 442 g 331 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UGAGUAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGN-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGCGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- ACG-AGGG-C 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyodA1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. A1. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. A1. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Stanton,T.B., Jensen,N.S., Casey,T.A., Tordoff,L.A., Dewhirst,F.E. and Paster,B.J. TITLE Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula, gen. nov. as Serpula hyodysenteriae comb. nov. and Serpula innocens, comb. nov JOURNAL Int. J. Syst. Bacteriol. 41, 50-58 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57742|g175935 isolate_name= A1 NB: genus name changed from Serpula to Serpulina BASE COUNT 385 a 302 c 425 g 319 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~GUAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UNAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|- CCUNC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-N ACUAC-GUG( CCA--GCAGC CGNNNUN-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGN-U|GGAA 1381 UU-CNCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-NCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AN)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GC-U-G AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--NNU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UNG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-NGG NCU-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 167:90 (group II). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 167:90 (group II). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14935|g559793 nat_host= Anas plathyrynchos isolate_name= AN 167:90 (group II) BASE COUNT 386 a 299 c 425 g 316 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AY 541 AA-------- -)-GUA---G MG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GK 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACK)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-YU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-W-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCRAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.hyody4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina hyodysenteriae str. B204. ACCESSION No information KEYWORDS No information. SOURCE Serpulina hyodysenteriae str. B204. ORGANISM Serpulina hyodysenteriae. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14932|g559790 nat_host= Sus scrofa isolate_name= B204 BASE COUNT 389 a 299 c 427 g 318 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brs.aalbor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachyspira aalborgi. ACCESSION No information KEYWORDS No information. SOURCE Brachyspira aalborgi. ORGANISM Brachyspira aalborgi. REFERENCE 1 AUTHORS Hookey,J.V., Barrett,S.P., Reed,C.S. and Barber,P. TITLE Phylogeny of human intestinal spirochaetes inferred from 16S rDNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 117, 345-350 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22781|g433532 NCTC 11492 = ATCC 43994 NB: GB Z22781 (1..8) ACUAGACG removed because not matching group seq. BASE COUNT 396 a 302 c 422 g 322 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GU-- U-GC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G A--CGC-(-- --------UA 541 AA-------- -)-GCG---U AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-CCACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-AC- 1261 U-AU-AAG|U CUA---AGGU G-AAA-UA-U CG-AAG-C(- UC-A)A-CUU -CG-G-AAA- 1321 -CGCC-UCGG A-UAC-UGUG G-UUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGU -AU-AGAU-A UC-GAGAAG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UG-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-UUGC A--CA-CU-- -------A|G -GU-GC-UCC -UA-U----- ---------- 1681 -(-UA-AA)- ---------- ---------- ---------- --------AU -AGGCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUG C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UAU-A--(- GAGA-)-UAU -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| AUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -UC)-CCC-C AA-------- CGAG-C--GC AACCC-UU-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CC-G-CCU --AC(-GUUU AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AU -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG--A UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GC-CG A-AGGU-GGU ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.N-HRM7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Italy str. Italy N-HRM7. ACCESSION No information KEYWORDS No information. SOURCE str. Italy str. Italy N-HRM7. ORGANISM str. Italy. REFERENCE 1 AUTHORS Hookey,J.V. and Barrett,S.P. TITLE The phylogeny of human intestinal spirochaetes by partial 16S rDNA sequence analysis JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26968|g450692 isolate_name= Italy N-HRM7 NB: might be same strain as Srp.inno22 BASE COUNT 117 a 87 c 126 g 91 t 3955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ........GC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 ---C-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GU.( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.N-WesB 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Australia str. Australia N-Wes B. ACCESSION No information KEYWORDS No information. SOURCE str. Australia str. Australia N-Wes B. ORGANISM str. Australia. REFERENCE 1 AUTHORS Hookey,J.V. and Barrett,S.P. TITLE The phylogeny of human intestinal spirochaetes by partial 16S rDNA sequence analysis JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26967|g450691 isolate_name= Australia N-Wes B NB: might be same strain as Srp.inno24 BASE COUNT 131 a 98 c 139 g 104 t 3904 others ORIGIN 1 .......... .......... .......... .......... .....A(U-A U)U-UAC|-U 61 GCUCAG-A-C -GGAA-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUG---A -AGCG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno22 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. HRM-7. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. HRM-7. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23031|g786279 Former RDP Sids: str.HRM7 isolate_name= HRM-7 BASE COUNT 396 a 303 c 424 g 325 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GAU-N -CGU-CU--U AAGC-AUNCA A-NUC-GAGC 121 G--GN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AACG-NCGA- 361 -N-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-N C-CGUG---N -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGAAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-UA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. WES-B. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. WES-B. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23034|g786280 Former RDP Sids: str.WESB isolate_name= WES-B BASE COUNT 397 a 301 c 425 g 324 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GAU-G -CGU-CU--U AAGC-AUNCA A-NUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AACG-UCGA- 361 -N-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-N C-CGUG---N -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -AC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -NCAUCUG-- ---------- ---------- ---------G 1501 NNA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-NC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGAAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno23 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. P43/6/78. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. P43/6/78. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23032|g786284 Former RDP Sids: str.P43678 isolate_name= P43/6/78 BASE COUNT 386 a 301 c 429 g 321 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCN A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------NA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -NC-GUAGG- UAA--UCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -NCAUCUG-- ---------- ---------- ---------G 1501 NCA--UU-UA UCGACG-CUG AN-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUNC)-CCU- ----GGNN-G UC----CUA- G-NC-GN--A 1621 AAC-G-UUGN A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. P 43 (group IV). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. P 43 (group IV). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14927|g559785 nat_host= Sus scrofa isolate_name= P 43 (group IV) NB: Strains AN 497-93 (group IV), AN 914-90 (group IV), AN 76-92 (group IV) and C 62 (group IV) have 16S rRNA identical to Srp.inno14 strain P 43 BASE COUNT 388 a 296 c 424 g 323 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 162 (group IV). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 162 (group IV). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14928|g559786 nat_host= Sus scrofa isolate_name= C 162 (group IV) BASE COUNT 388 a 295 c 424 g 324 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUU -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 916:90 (group IV). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 916:90 (group IV). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14929|g559787 nat_host= Sus scrofa isolate_name= AN 916:90 (group IV) BASE COUNT 387 a 296 c 425 g 323 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUG---A -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UU- 1261 U-AU-AAG|U CUA---GGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-U ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UA-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUC- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GC-GU-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. 155-20. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. 155-20. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Trott,D.J., Lee,J.I., McLaren,A.J., Hampson,D .J., Paster,B.J. and Jensen,N.S. TITLE Differentiation of intestinal spirochaetes by multilocus enzyme electrophoresis analysis and by 16S rRNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 136, 181-186 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22838|g733413 Former RDP Sids: str.155-20 isolate_name= 155-20 BASE COUNT 394 a 307 c 433 g 318 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GAU-G -CGU-CU--U AAGC-AUNCA A-GUC-GAGC 121 G--GN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AACG-GCGA- 361 -G-CU-GG-U GAGU---NAC -AC-GUAGG- UAA--UCU-N C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACA)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 NNA--UU-UA UCGACG-CUG AN-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGC A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG CAGCC-GUAC C(GGA-A)GG UGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 378 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 378 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14918|g559776 nat_host= Sus scrofa isolate_name= C 378 (group III) BASE COUNT 388 a 298 c 428 g 319 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-A-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G CG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- UCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 301 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 301 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14917|g559775 nat_host= Sus scrofa isolate_name= C 301 (group III) BASE COUNT 387 a 298 c 429 g 319 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AU 541 AA-------- -)-GUA---G CG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUA A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno71 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. 4/71. ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. 4/71. ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Stanton,T.B., Jensen,N.S., Casey,T.A., Tordoff,L.A., Dewhirst,F.E. and Paster,B.J. TITLE Reclassification of Treponema hyodysenteriae and Treponema innocens in a new genus, Serpula, gen. nov. as Serpula hyodysenteriae comb. nov. and Serpula innocens, comb. nov JOURNAL Int. J. Syst. Bacteriol. 41, 50-58 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57745|g175938 isolate_name= 4/71 NB: genus name changed from Serpula to Serpulina BASE COUNT 384 a 300 c 430 g 322 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~GUAUNG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UNAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G GG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|- CCUNC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CNCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-NCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGANG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AN)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 NG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--NA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-U-G AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--NUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UNG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG N-AGGU-UGG ACU-GN-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 1023:90 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 1023:90 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14915|g559773 nat_host= Sus scrofa isolate_name= AN 1023:90 (group III) BASE COUNT 386 a 301 c 429 g 317 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-AC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-CU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|U-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGCC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 555 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 555 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14926|g559784 nat_host= Sus scrofa isolate_name= C 555 (group III) BASE COUNT 386 a 301 c 430 g 316 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-CU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UACA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGCC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 3706:90 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 3706:90 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14925|g559783 nat_host= Sus scrofa isolate_name= AN 3706:90 (group III) BASE COUNT 386 a 299 c 430 g 318 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--A C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.inno11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. AN 1004:90 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. AN 1004:90 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14924|g559782 nat_host= Sus scrofa isolate_name= AN 1004:90 (group III) BASE COUNT 385 a 299 c 432 g 318 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GGG( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -C-UGGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUU-AG AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUA-CGUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 173 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 173 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14921|g559779 nat_host= Sus scrofa isolate_name= C 173 (group III) BASE COUNT 385 a 299 c 431 g 318 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 320 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 320 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14919|g559777 nat_host= Sus scrofa isolate_name= C 320 (group III) BASE COUNT 386 a 299 c 430 g 318 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GAGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. C 109 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. C 109 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14922|g559780 nat_host= Sus scrofa isolate_name= C 109 (group III) BASE COUNT 385 a 300 c 432 g 317 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----CC U--AUUA-G- CCU-G---UU 721 GG-UG-GGG( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -C-UGGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUU-AG AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUC-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--G| AUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUA-CGUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innoc7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. B256 (group III). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. B256 (group III). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Fellstroem,C., Pettersson,B., Uhlen,M., Gunnarsson,A. and Johansson,K.-E. TITLE Phylogeny of Serpulina based on sequence analyses of the 16S rRNA gene and comparison with a scheme involving biochemical classification JOURNAL Res. Vet. Sci. 9, 5-9 (1995) STANDARD No information REFERENCE 2 AUTHORS Pettersson,B., Fellstroem,C., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE The phylogeny of porcine intestinal spirochetes as determined by sequence analysis of 16S rRNA JOURNAL Unpublished (1994) STANDARD No information REFERENCE 3 AUTHORS Fellstroem,C., Pettersson,B., Gunnarsson,A., Uhlen,M. and Johansson,K. TITLE Classification of intestinal porcine spirochetes by sequence analysis of 16S rRNA and biochemical methods JOURNAL (in) Poomvises,P. and Ingkaninum,P. (Eds.); PROCEEDINGS OF THE 13TH INTERNATIONAL PIG VETERINARY SOCIETY CONGRESS, Vol. 13: 146-146; Tiranasar Press, Bangkok, Thailand (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14920|g559778 nat_host= Sus scrofa isolate_name= B256 (group III) BASE COUNT 386 a 299 c 430 g 318 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----UC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-UUG AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-GA UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UCGG A--GU-UGG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-GGG ACU-GA-UG- AUG-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srp.innocn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serpulina innocens str. B256 ATCC 29796 (T). ACCESSION No information KEYWORDS No information. SOURCE Serpulina innocens str. B256 ATCC 29796 (T). ORGANISM Serpulina innocens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29796 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57744 isolate_name= B256 NB: former name Serpula innocens BASE COUNT 390 a 303 c 430 g 320 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...AGUAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUAUUC-GG (--GC----- ---------- ---------- 241 --------AA -)CU-GGAUA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CGUA---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AU-- G(-GAAA-)C -AUGG-A--C UAAUACC-GC 481 AU-AUA---- ---------- -------C-U CU----U--G C--UAC-(-- --------AC 541 AA-------- -)-GUA---G AG-UA----G AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UACG-- AUG---A-|G CCUGC----- -GG|----UC U--AUUA-G- CCU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-UA- CGA------- -----UA-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CAUC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| GGAA-AU-UA 1021 --UC-GAA-- GA-A------ ---------( -----UGAG- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GAU-A-AU G-UA----AG ---------C 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGNNNUN-A) U-A-C-GUAG |-GAGG-C-- 1201 AAA-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-CU- 1261 U-AU-AAG|U CUA---AGGU G-AAA-GA-C CG-AAG-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCC-UCGG A-UAC-UGUG A-GUCUU-GG AUA-----UU G-UA-GGGGA UGA-U|GGAA 1381 UU-CNCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCUA- 1441 -U-A-GC(-G AA-G)GCAG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA UCGACG-CUG AA-U------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------A|G -GU-GC-UUC -UA-U----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------AU -AGGAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-UC- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GNAACUC -AAA-GAAAU UG-ACGGG-U -C-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-GU-U-G AAU-UG|--- -------U-A ---AGAUG-- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAA -G-UCAG--- A--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----A--C| GUU-UU-ACA |---U|A--G 2161 GU-GC-UGCA UG|C-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CUU- 2281 UG--UUGC-U AC-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-UAG-GG-G A-CU-G-CCU --AC(-GUUC AA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAA-AAAA -GU-U-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NA UUGUA----C 3061 ACACCGNCC- GUC-ACG--- --CCA-UCGG A--GU-UNG- UU-UU-ACCU -GAA-G-UCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-GC-GC-CG A-AGGU-NGG ACU-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.2-BRE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.2 BREVINEMA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.13.2 BREVINEMA_SUBDIVISION. ORGANISM 2.13.2 BREVINEMA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brv.andrsn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevinema andersonii str. FS47. ACCESSION No information KEYWORDS No information. SOURCE Brevinema andersonii str. FS47. ORGANISM Brevinema andersonii. REFERENCE 1 AUTHORS Defosse,D.L., Johnson,R.C., Paster,B.J., Dehirst,F.E. and Fraser,G.J. TITLE Brevinema andersonii gen. nov., sp. nov., an infectious spirochete isolated from the short-tailed shrew (Blarina brevicauda) and the white-footed mouse (Peromyscus leucopus ) JOURNAL Int. J. Syst. Bacteriol. 45, 78-84 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L31543|g468269 isolate_name= FS47 BASE COUNT 377 a 314 c 454 g 298 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAAUAAUGG AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-AGC-G -UGU-UU--U AGGC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---A -GGAC-U-GG 421 -GAU-AG-CC A--------- ------AG-- A(-GAAA-)U -UUUG-G--G UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCU--U- A--CCU---- 661 ----GUGG-- AUG---A-|G CCUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GG-C-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GUCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 AAG-AAUAUU C-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGGA|-GCGA CGCU-GC-GU 961 G-A-AG-G-A A-GAA--G-G CA(--UU-CG --)UG-UUGU AAA--CUNC| UUUU-CU-AA 1021 --AG-GAA-- GA-AUAA-GU --GUG-GGA( G----GAAA- -----U---) GCCU-GC-AU 1081 ---------- -------G-A U-GA-CGGU- A-CUU-U-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGN-N-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UU- 1261 A-UU-AGG|C CGA---GUGU G-AAA-GA-C CG-GGN-C(- UC-A)A-CUU -CG-G-GAA- 1321 -CGCG-CUCG G-AAC-CGAU A-GACUA-GA AUC-----UA G-GG-GAAGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UG-GGAAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUACCUA-- ---------- ---------- ---------U 1501 GCU--AA-GA UUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------U|A -GA-GU-UGC -GC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -CGUNG-UUC 1741 UG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGA -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- -------U-A ---CUGG--- -AA----UGU 1981 -UGU-G--(- GAAA-)-CAU -G-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCA-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--UUC- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UAG|A 2701 G-GA-CU-C- U-GGA-AA-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GGGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-G-CG -GA--CAGCG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-A CCUCC-AAAC -CG-U-ACC- UCAAUACGGA 2941 U-UGCACUC- (UGAAAC-U- C)-GAGUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAU)-A CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UAG- UU-UG-UCCU -GAA-G-CGG 3121 GUUAC-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G N-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brv.andrs2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevinema andersonii str. MV116. ACCESSION No information KEYWORDS No information. SOURCE Brevinema andersonii str. MV116. ORGANISM Brevinema andersonii. REFERENCE 1 AUTHORS Defosse,D.L., Johnson,R.C., Paster,B.J., Dehirst,F.E. and Fraser,G.J. TITLE Brevinema andersonii gen. nov., sp. nov., an infectious spirochete isolated from the short-tailed shrew (Blarina brevicauda) and the white-footed mouse (Peromyscus leucopus ) JOURNAL Int. J. Syst. Bacteriol. 45, 78-84 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L31544|g468270 isolate_name= MV116 BASE COUNT 373 a 313 c 452 g 294 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UAAUAAUGG AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-AGC-G -UGU-UU--U AGGC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---A -GGAC-U-GG 421 -GAU-AG-CC A--------- ------AG-- A(-GAAA-)U -UUUG-G--G UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCU--U- A--CCU---- 661 ----GUGG-- AUG---A-|G CCUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UNACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GG-C-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GUCC -CUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 AAG-AAUAUU C-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGGA|-GCGA CGCN-GC-GU 961 G-A-AG-G-A A-GAA--G-G CA(--UU-CG --)UG-UUGU AAA--CUNC| UUUU-CU-AA 1021 --AG-GAA-- GA-AUAA-GU --GUG-GGA( G----GAAA- -----U---) GCCU-GC-AU 1081 ---------- -------G-A U-GA-CGGU- A-CUU-U-AG G-AA--UAAG ---------C 1141 -CCCGGCU-N AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGN-C-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UU- 1261 A-UU-AGG|C CGA---GUGU G-AAA-GA-C CG-GGN-N(- NC-A)A-CUU -CG-G-GAA- 1321 -CGCG-CUCG G-AAC-CGAU A-GACUA-GA AUC-----UA G-GG-GAAGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UG-GGAAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUACCUA-- ---------- ---------- ---------U 1501 GCU--AA-GA UUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------U|A -GA-GU-UGC -GC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -CGUNG-UUC 1741 UG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGA -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- -------U-A ---CUGG--- -AA----UGU 1981 -UGU-G--(- GAAA-)-CAU -G-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCA-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--UUC- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UAG|A 2701 G-GA-CU-C- U-GGA-AA-G A-CU-G-CCG --GC(-GA-C NA)-GNN-G- -GGGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-G-CG -GA--CAGCG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-A CCUCC-AAAC -CG-U-ACC- UCAAUACGGA 2941 U-UGCACUC- (UGAAAC-U- C)-GAGUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAU)-A CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UNG- UU-UG-UCCU -GAA-G-CGG 3121 GUUAC-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G N-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brv.andrs3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevinema andersonii str. CT 11616 (J.F. Anderson) ATCC 43811 (T). ACCESSION No information KEYWORDS No information. SOURCE Brevinema andersonii str. CT 11616 (J.F. Anderson) ATCC 43811 (T). ORGANISM Brevinema andersonii. REFERENCE 1 AUTHORS Defosse,D.L., Johnson,R.C., Paster,B.J., Dehirst,F.E. and Fraser,G.J. TITLE Brevinema andersonii gen. nov., sp. nov., an infectious spirochete isolated from the short-tailed shrew (Blarina brevicauda) and the white-footed mouse (Peromyscus leucopus ) JOURNAL Int. J. Syst. Bacteriol. 45, 78-84 (1995) STANDARD No information REFERENCE 2 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43811 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59179 Former RDP Sids: Spi.11616 Trp.11616 isolate_name= CT 11616 (J.F. Anderson) NB: ATCC lists this as Spirochaeta sp. former name Treponema sp. BASE COUNT 361 a 279 c 418 g 275 t 3043 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUAAUAAUGG AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-AGC-G -NGU-UU--U AGGC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CNAU---A -GGAC-U-GG 421 -GAU-AG-CC A--------- ------AG-- A(-GAAA-)U -UUUG-G--G UAAUACC-NG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GGGGC-- ---------- 601 --(------- ---AUUU--- ---)------ ---------| --GCCN--U- A--CCU---- 661 ----GUGG-- AUG---A-|G CCUAC----- -GU|----CC N--AUCA-G- CUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UNACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GG-C-- CGG-C|C-AC -AAGGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 AAG-AAUAUU C-CGCAAU-- GG-GG-(GAA A)-CCC-NNA CGGA|-GCGA CGCN-GC-GU 961 G-A-AG-G-A A-GAA--G-G CA(--UU-CG --)UG-UUGU AAA--CUNC| UUUU-CU-AA 1021 --AG-GAA-- GA-AUAA-GU --GUG-GGA( G----GAAA- -----U---) GCCN-AC-AU 1081 ---------- -------G-A U-GA-CGGU- A-CUU-U-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAA |-GGGN-N-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -N|-GU-UU- 1261 A-UU-AGG|C CGA---GUGU G-AAA-GA-C CG-GNN-N(- NC-N)A-CUU -CG-G-NAA- 1321 -CGCG-CUCG N-NAC-CGAU A-GACUA-GA AUC-----UA G-GG-GAAGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UG-GGAAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUACCUA-- ---------- ---------- ---------U 1501 GCU--AA-GA UUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------U|A -GA-GU-UGC -GC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -CGUNG-UUC 1741 UG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUGUA C|C|G-CCU- G-AGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-C-GU-GGA -UUAAUU-CG -(AUGNUA-A G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- -------U-A ---CUGG--- -AA----UGU 1981 -UGU-G--(- GAAA-)-CAU -G-GCUAG-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCA-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UU--UUC- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UAG|A 2701 G-GA-CU-C- U-GGA-AA-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GGGG-A-AG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-G-CG -GA--CAGCG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-A CCUCC-AAAC -CG-U-ACC- UCAAUACGGA 2941 U-UGCACUC- (UGAAAC-U- C)-GAGUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGCAAU)-A CCG-CGGUG- A......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3-SPI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION. ORGANISM 2.13.3 SPIROCHAETA-TREPONEMA-BORRELIA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.1 SPI.HALOPHILA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.1 SPI.HALOPHILA_GROUP. ORGANISM 2.13.3.1 SPI.HALOPHILA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.isoval 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta isovalerica str. MA-2 ATCC 33939. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta isovalerica str. MA-2 ATCC 33939. ORGANISM Spirochaeta isovalerica. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33939 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88720 ATCC 33939 = DSM 2461 (T) isolate_name= MA-2 BASE COUNT 381 a 317 c 456 g 337 t 2885 others ORIGIN 1 ~~~~~~~~NN UCGCACUUCG GUGUNNUNNA UNAAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-UU--U AAGN-AUGCA A-GUC-GAAC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N NAGU---AAC -AC-GUAGA- UGA--UCU-G C-CUUG---A -AGUU-G-GG 421 -GAU-AG-CC C--------- ------AU-- A(-GAAA-)U -AUGG-G--G UAAUACC-GG 481 AU-AAU---- ---------- -------C-U CU-U--U--- U--UAC-(-- --------UU 541 UG-------- -)-GUG---- AA-UA----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCCU--C- G--CUU---- 661 ----URAG-- AUG---A-|G UCUGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A A-GAA--U-G CC(--GA-GA --)GG-UUGU AAA--GUCC| NUUU-AU-UU 1021 --GC-GAA-- GA-AUAA-UR --ACY-GUA( G----GUAA- -----U---) GACR-GU-YA 1081 ---------- -------G-A U-GA-CGUU- A-GCU-U-AU G-AA--UAAG ---------C 1141 -UCCGGCC-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGAG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---GUGU G-AAA-UA-C UA-CAG-C(- UU-A)A-CUG -UG-G-GAA- 1321 -CGCA-CUGG A-AAC-UGUG A-GACUA-GA AUC-----AG U-GA-GGGGU AAC-C|GGAA 1381 UU-CCUUGU- GUA-GGG(-G UGAAA)-UCU -GU-UGAU-A UA-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 CGC--AU-GA UUGACG-CUG AU-G------ -------UG- C-NNNA-GC- GU-AGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------U|G -GU-GU-UGG -GG-UU---- ---------- 1681 -(-AC-UA)- ---------- ---------- ---------- -------AGC -CUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AUGNUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- -------U-U ---UAUG--- -AU----CGU 1981 -CAU-A--(- GAGA-)-UAU -G-AUUU--- UN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CAU-UU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUC- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-GGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG UGA-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CGCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCU--- ---------- ---------- -----(---- GCAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-A-C G-GC-GC-CG A-AGGU-AUG CCU-GG.... .......... 3301 .......... GUAA-CAAG. ......GUAC U(GGA-A)AG .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.litora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta litoralis str. R1 ATCC 27000. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta litoralis str. R1 ATCC 27000. ORGANISM Spirochaeta litoralis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27000 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88723 ATCC 27000 = DSM 2029 (T) isolate_name= R1 BASE COUNT 387 a 313 c 471 g 343 t 2862 others ORIGIN 1 ~~~~~~~~~~ NAGGGUCUUC GGACNNNNAU UAUAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-UU--U AAGN-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UGA--UCU-A C-CUUU---U -AGUU-G-GG 421 -GAU-AG-CC C--------- ------AU-- G(-GAAA-)C -AUGG-G--G UAAUACC-GA 481 AU-AAU---- ---------- -------C-U C--A--U--- U--GAU-(-- --------UU 541 UG-------- -)-UUU---- AA-U-----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCU--C- G--CUG---- 661 ----AAAG-- AUG---A-|G CCUGC----- -GU|----AU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-UG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AU 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A A-GAA--U-G UC(--GA-GA --)GA-UUGU AAA--GCAC| UUUU-AU-AU 1021 --GU-GAG-- GA-AUAA-CA --GUA-UCA( G----GAAA- -----U---) GGGU-AU-UG 1081 ---------- -------G-A U-GA-CGUU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -UCCGGCC-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGAG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CCG---AUGU G-AAA-GC-G UG-CAG-C(- UU-A)A-CUG -CA-U-UGU- 1321 -UGCG-UUGG A-AAC-UGCG A-GACUA-GA AUC-----CG A-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-UGAU-A UU-AGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CUC--UG-GA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-AGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------U|G -GU-GU-CUG -GA-UC---- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- -------GAU -CUAGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-G---(G CAA)---C-G GN-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AUGAUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AC----GGC 1981 -ACU-A--(- GAGA-)-UAG -U-GUUU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CUU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGA AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG UGA-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGG- GG-GU-ACCC -GAA-G-UCA 3121 G-CAG-G-CU -AA-CC---- ---------- ---------- -----(---- UUCNU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-GC-CG A-AGGU-AUG CUA-GG-NA- AGG-GGGG-U 3301 G---AAGNN- GUAA-CAAGG UAGC...... .(.GA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.haloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta halophila str. RS1 ATCC 29478 (T). ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta halophila str. RS1 ATCC 29478 (T). ORGANISM Spirochaeta halophila. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29478 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88722 isolate_name= RS1 BASE COUNT 380 a 344 c 512 g 317 t 2823 others ORIGIN 1 ~~~~~~~~~~ NCGUCCCUUC GGGGACGUAC AAAAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-UU--U AAGC-AUGCA A-GUC-GAGG 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAUG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ ACCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--UCU-A C-CUUG---A -GGUU-G-GG 421 -GAU-AG-CC C--------- ------AU-- G(-GAAA-)C -AUGG-G--G UAAUACC-GA 481 AU-GAG---- ---------- -------C-U CU-A--U--- G--UAC-(-- --------UG 541 UG-------- -)-GUG---- UA-UA----G AG--GAAA-- ---AGGGC-- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GCCC--U- G--CCU---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GG|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--GU-GA --)GG-UUGU AAA--GCCC| UUUU-CU-AC 1021 --CU-GAG-- GA-AUAA-GU --AUC-GGA( G----GGAA- -----U---) GCCG-GU-AU 1081 ---------- -------G-A U-GA-CGGU- A-GGG-U-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAU |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUG---AUGU A-AAA-GA-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCA- 1321 -UGCG-UUGG A-AAC-UGUA U-GUCUU-GA AUC-----CU U-GA-GGGGG AAC-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -GUUCCUG-- ---------- ---------- ---------G 1501 CAA--GU-GA UUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GC-GU-UGG -GG-U----- ---------- 1681 -(GUU-GA)A ---------- ---------- ---------- --------AC -CUCAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-UG- GUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UA|--- -------U-A ---CUGG--- -AA----GUC 1981 -GUG-G--(- GAGA-)-CCA -C-GGUG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUC- 2281 UG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- A-GAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CGCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-C- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGC-AU)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGG- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- AUUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GC-GC-CG A-AGGU-ACG CCU-GG-UA- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAN N(NGA-A)AG .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_H 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52551 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:related to Spi.haloph BASE COUNT 99 a 104 c 130 g 85 t 3958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... ...AAUU-UG -(A------- -)-------A 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- -------U-G ---CAGC--- -GA----GUC 1981 -GUG-A--(- GAGA-)-UCA -C-GAUG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| GCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UCU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-N-CCG --GU(-GA-C AA)-ACC-G- -GAGN-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAAAG CGA-G-G-N- GA-AAN-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-C CGCAG-AAAG -CC-G-GCC- UCAGUUCGSA 2941 U-UGGAGUC- (UGAAAC-C- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.thmoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta thermophila. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta thermophila. ORGANISM Spirochaeta thermophila. REFERENCE 1 AUTHORS Rainey,F.A., Dorsch,M., Morgan,H.W. and Stackebrandt,E. TITLE 16S rDNA analysis of Spirochaeta thermophila: it's phylogenetic position and implications for the systematics of the order Spirochaetales JOURNAL Syst. Appl. Microbiol. 15, 197-202 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62809 BASE COUNT 293 a 326 c 479 g 229 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -CGU-CU--U AGGC-AUGCA A-GUC-GAGC 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUGG-UG (--CUU---- ---------- ---------- 241 --------UG -)CA-C-ACC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-G U-CCUC---A -GGUU-G-GG 421 -GAU-AG-CC C--------- ------GU-- G(-GAAA-)C -ACGG-G--G UAAUACC-GA 481 AU-GGC---- ---------- -------C-U CC-U--U--- U--GGC-(-- --------UG 541 UG-------- -)-GCC---- UG-AG----G AG--GAAA-- ---GGCCC-- ---------- 601 --(------- ---GAUAA-- ---)------ ---------| --GGGU--C- G--CCU---- 661 ----GAGG-- AGN---N-|N NNUGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G CC(--GG-AA --)GG-UUGU AAA--CCCC| UUUU-CC-CA 1021 --GG-GAA-- GA-AUAA-GG --GCG-GGA( G----GUAA- -----U---) GCCC-GU-CU 1081 ---------- -------G-A U-GA-CGUU- A-CCU-G-GG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAN |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CUG---GUGU A-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UG-- 1321 -UGCA-CCGG A-AAC-UGCU G-GGCUG-GA GUC-----CC G-GA-GGGGG AGC-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-GGGAGG- AACG-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -GCUCCUG-- ---------- ---------- ---------G 1501 CCG--GA-GA CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GC-GU-UGG -GC-C----- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- --------GG -CUCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-G---(G CAA)---C-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- -------U-A ---CCGG--- -GC----GGC 1981 -UGC-A--(- GAGA-)-UGC -A-GCUU--- C--------- ---CC----- --(CG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- -----G---| GCU-GU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---GU ---GAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- A-GGC-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCAAA-U CCCAG-AAAG -CC-G-GUC- UCAGUACGGA 2941 U-UGGAGUC- (UGAAAC-C- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGCCAU)-G GCG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.bajaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta bajacaliforniensis str. BA-2 ATCC 35968. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta bajacaliforniensis str. BA-2 ATCC 35968. ORGANISM Spirochaeta bajacaliforniensis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35968 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71239 isolate_name= BA-2 BASE COUNT 376 a 328 c 481 g 293 t 2898 others ORIGIN 1 .......UCA ACAUCUUCGG AUGUNAACAU ACUAUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-NU--U AANN-AUGCA A-GUC-GAGG 121 G--------- -----GUAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAAG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CUNU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ ACCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-G U-CUUG---G -GAUG-G-GG 421 -GAU-AG-CC C--------- ------AU-- G(-GAAA-)C -AUGG-G--G UAAUACC-GC 481 AU-NAG---- ---------- -------C-U NU-N--U--U A--UUC-(-- --------AU 541 AA-------- -)-GAG---U GA-UA----G AG--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UUAG--- ---)------ ---------| --GCGU--C- G--ACC---- 661 ----UAAG-- AGG---A-|G UCUGC----- -GG|----UC C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUUC| UUUU-CU-UG 1021 --GA-GAG-- GA-AUAA-GC --CUA-UCA( G----GAAA- -----U---) GGAU-GG-GU 1081 ---------- -------G-A U-GA-CGUU- A-ACC-G-AG G-AA--AAAG ---------C 1141 -CCCGGCU-N AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-AU- 1261 G-GC-AAG|U CAG---GUGU G-AAA-GG-C UC-CAG-C(- UC-A)A-CUG -GA-G-NAA- 1321 -CGCG-CUUG A-AAC-UGCU G-UACUA-GA GUU-----UA G-GA-GGGGA AGC-U|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -GCUUCUG-- ---------- ---------- ---------G 1501 CCA--UA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------G|G -GU-GU-CGG -CC------- ---------- 1681 -(GUU-GG)- ---------- ---------- ---------- ---------G -GUCGG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-GNN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-G ---GUGG--- -AC----GGU 1981 -GGU-A--(- GAGA-)-UAC -C-RCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-CU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-AGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-R |-CU--AUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-GAU-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAA-C-GG -UA--CAGAG CGU-C-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CGCAA-AAAG -CC-G-NNC- UCAGUACAGA 2941 U-UGGAGUC- (UGAAAC-C- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCG--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-A-C G-GU-GC-CG A-AGGU-AUG CCU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.PL12MY 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PL12MY. str. PL12MY. ACCESSION No information KEYWORDS No information. SOURCE str. PL12MY. str. PL12MY. ORGANISM str. PL12MY. REFERENCE 1 AUTHORS Mandelco,L. and Woese,C.R. JOURNAL Unpublished (1986) STANDARD No information COMMENTS isolate_name= PL12MY NB: K. Stetter isolate (unpub); mycoplasma-like BASE COUNT 365 a 311 c 451 g 310 t 2939 others ORIGIN 1 ~~~~~~~~NU GAUCUUUAUG AUCCCNNUUU UAUAUAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-UU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCCC---U -UGUU-G-GG 421 -UAU-AG-CC U--------- ------GU-- G(-GAAA-)C -AUAG-G--G UAAUACC-GA 481 AU-AAU---- ---------- -------A-C UU-U--U--U G--AUC-(-- --------AU 541 AA-------- -)-GAU---U AG-AG----A GG--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCGU--C- G--CAA---- 661 ----GAGG-- AUG---A-|G UCUGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-AA- UGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--GU-GA --)GG-UUGU AAA--GUUC| UUUU-CG-AG 1021 --AG-GAG-- GA-AUAA-UG --UUU-GCA( G----GGAA- -----U---) GGCA-GG-CA 1081 ---------- -------G-A U-GA-CGUG- A-AUC-U-CG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-CAG-GC -G|-GU-GU- 1261 U-GC-AAG|U CUG---GCGU G-AAA-GA-U CU-CGG-C(- UU-A)A-CCG -AG-G-GGA- 1321 -CGCG-CUGG A-AAC-UGUA A-UACUA-GA GUA-----CA G-GA-GGGGA CAU-U|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -AUGUCUG-- ---------- ---------- ---------G 1501 CCA--UG-UA CUGACG-CUG AG-A------ -------CG- C-NAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(UUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GG-UGG -GU-A----- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- --------UA -UUCGC-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UUGG--- -AC----GAA 1981 -ACU-A--(- GAGA-)-UAG -U-UUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCG-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-AGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 UG--UUAC-C AU-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GGU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGC-A-G-C- UA-AGU-C(G 2881 -CGA)GGCU- ---------- NA-GCGAA-U CGCAA-AAAG -CC-G-GCC- UCAGUACGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGC-AU)-G AUG-CGGUG- AAUAC-GUU- CCC-NGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UNN- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCA--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-A-C G-GU-UC-CG A-AGGU-AUG CUU-GG-CG- AGG-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.spAntc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta sp. str. Antarctic DSM 6211. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta sp. str. Antarctic DSM 6211. ORGANISM Spirochaeta sp. REFERENCE 1 AUTHORS Franzmann,P.P. and Dobson,S.J. TITLE Cell wall-less, free-living spirochetes in Antarctica JOURNAL FEMS Microbiol. Lett. 97, 289-292 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 6211 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M87055 isolate_name= Antarctic BASE COUNT 393 a 328 c 476 g 329 t 2850 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-NNN -NNNC-GC-- UGGC-GGC-G -CGU-UU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCCC---U -UGUU-U-GG 421 -GAU-AG-CU U--------- ------GU-- G(-GAAA-)C -AUAA-G--G UAAUACC-GA 481 AU-GAG---- ---------- -------A-U UC-U--U--U U--AUC-(-- --------AU 541 AA-------- -)-GAU---A AU-AG----A AG--GAAA-- ---GGCGCU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -AGCGU--C- G--CAA---- 661 ----GGGG-- AUG---A-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---AC 721 GG-CA-GG-( GU-AAA-AG) -C-CUACC-G U|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----NN-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--GU-GA --)GG-UUGU AAA--GUUC| UUUU-CG-AG 1021 --AG-GAG-- AA-AUAA-GG --CCU-GCA( G----GAAA- -----U---) GGUA-GG-CU 1081 ---------- -------G-A U-GA-UGUU- A-AUC-U-CG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 U-AC-AAG|U CUG---ACGU G-AAA-GA-U CU-CGG-C(- UU-A)A-CCG -AG-G-GAA- 1321 -CGCG-UUGG A-AAC-UGUG A-GGCUU-GA GUA-----UA G-AA-GGGGA CAU-U|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGG- 1441 -N-G-GC(-G AA-G)GCGA- -AUGUCUG-- ---------- ---------- ---------G 1501 UCA--UA-UA CUGACG-CUG AG-A------ -------CG- C-GAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(UUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-CAG -GU-C----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------GA -UUUGG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UA|--- -------U-A ---UUGG--- -AC----GAA 1981 -CAU-A--(- GAGA-)-UAU -G-UUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| UCG-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-AGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--ACC- 2281 UG--UUAC-C AU-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GGU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGC-A-G-C- UA-ACU-C(G 2881 -UGA)GAGU- ---------- GU-GCGAA-U CGCAA-AAAG -CC-G-GUC- CCAGUACGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGC-AU)-G AUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-A-C G-GU-UC-CG A-AGGU-AUG CUU-GG-CG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU.~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2 TREPONEMA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2 TREPONEMA_GROUP. ORGANISM 2.13.3.2 TREPONEMA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.1 TRP.SACCHAROPHILUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.1 TRP.SACCHAROPHILUM_SUBGROUP. ORGANISM 2.13.3.2.1 TRP.SACCHAROPHILUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.saccha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema saccharophilum str. PB ATCC 43261. ACCESSION No information KEYWORDS No information. SOURCE Treponema saccharophilum str. PB ATCC 43261. ORGANISM Treponema saccharophilum. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43261 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71238 ATCC 43261 = DSM 2985 isolate_name= PB BASE COUNT 392 a 352 c 484 g 307 t 2841 others ORIGIN 1 ~~~~~~UCUU UACCCCUUCG GGGGAUUAGA AUAAUCAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -GGU-CU--U AAGC-AUGCA A-NUC-GGAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGG---AAC -AC-GUUGG- UGA--CGU-A C-CCUU---U -GGAU-G-GG 421 -GAU-AG-CC G--------- ------GU-- A(-GAAA-)U -ACCG-G--G UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CG-G--U-NG ---UCU-(-- --------CG 541 GA-------- -)-AGC---- CA-CC----G AG--GAAA-- ---GCGGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCCG--C- G--CCG---- 661 ----AAGG-- AAC---G-|G CCUGC----- -GU|----CC C--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-G-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGGA|-GCCA CGCC-GC-GU 961 G-G-AC-G-A U-GAA--G-G CC(--GN-AA --)GG-UUGU AAA--GUCC| UUUA-GC-AA 1021 --GU-GAG-- GA-AUAA-GC --GGG-ACA( G----GGAA- -----U---) GGUC-UC-GU 1081 ---------- -------G-G U-GA-CUGU- A-GCU-U-GA G-AA--UAAG ---------G 1141 -GUCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GACC-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CAG---GAGU G-AAA-UA-C CG-GAG-C(- UU-A)A-CUC -CG-G-UGC- 1321 -UGCU-UUUG A-UAC-UGCU G-AACUU-GA AUC-----AG U-GA-GGGGU GAC-C|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACCA-- ---------- ---------- ---------G 1501 CAC--AU-GA UUGACG-CUC AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-CCG -CU-C----- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- --------GA -GUGGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGUG C|C|G-CCU- G-GGAAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|--- -------C-A ---GGGG--- -CA----NGG 1981 -CUC-A--(- GAGA-)-UGA -G-CCCC--- GG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CC---| UCC-CU-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UU-G-(UUAA -GU)-CAAAA AA-------- CGAG-C--GC AACCC-CU-A |-CU--GUC- 2281 AG--UUAC-U AA-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --AC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAAAG CGA-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-A CGCAA-AAAA -CU-C-ACC- GUAGUUCGGA 2941 U-CGGAGUC- (UGAAAC-U- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UCCG A--GC-CGG- GG-AU-ACCC -GAA-G-CAG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-C G-CU-UU-CU A-AGGU-AUG ACU-GG-U.. .......... 3301 .......... GUAA-CAAG. ......GUAC U(GGA-A)AG .......... GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.CA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema sp. str. CA. ACCESSION No information KEYWORDS No information. SOURCE Treponema sp. str. CA. ORGANISM Treponema sp. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser ,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59294 isolate_name= CA BASE COUNT 363 a 360 c 511 g 268 t 2874 others ORIGIN 1 ~~~~~~~~~~ NNNNNCUUAC GGGGNNUUGA AUAAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCAUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UAG---- ---|------ AGCG-GCNG- 361 -A-CU-NG-U GAGU---AAC -AC-GUAGG- UGA--CGU-A C-CUUG---A -GGAC-G-GG 421 -NAC-AG-NC G--------- ------GU-- A(-GAAA-)U -GCCG-G--G UAAUACC-GG 481 AU-AAG---- ---------- -------C-U -G-C--G-CG ---AGN-(-- --------NG 541 GA-------- -)-AUC---- GC-GC----G AG--GAAA-- ---GGAGC-- ---------- 601 --(------- ----UAA--- ---)------ ---------| --GCUC--C- G--CCU---- 661 ----CCAG-- AG......|. .......... .GG|----CC C--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-G-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A U-GAA--G-G CC(--GG-AA --)GG-UUGU AAA--GUCC| UUUG-GA-GA 1021 --CC-GAG-- GA-AUAA-GC --GGG-GCA( G----GGAA- -----U---) GGCC-CC-GC 1081 ---------- -------G-G U-GA-CUGU- A-GGU-C-UA G-AA--CAAG ---------C 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGUG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GC-GC- 1261 G-AU-AAG|U CAG---ACGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCG-UUUG A-UAC-UGUU G-CGCUU-GA GUC-----AG C-GA-GGCGG AAC-C|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCAG- -GUUCCGA-- ---------- ---------- ---------G 1501 CGC--AU-GA CUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------G|G -GU-GU-CCG -GG-C----- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- --------GC -CUGGG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CC- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ANNNG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|--- -------C-A ---GAGU--- -GA----UCG 1981 -CAU-G--(- GAGA-)-CAU -G-CGAG--- CG-------- ---UG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CA-------- ----CG---| ACU-CU-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-UA-CU-C- U-GGC-AG-A A-CU-G-CCG --GC(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -UA--CAGAG CGA-U-G-C- GA-GGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGGA-A CGCAA-AAAG -CC-N-ACN- GUAGUUCGGA 2941 U-CGGAGUC- (UGAAAC-C- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GC-CGG- GG-AU-ACCC -GAA-G-CAG 3121 G-CAG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-C G-CU-UU-CU A-AGGU-AUG CCU-GG-NN- NGG-GGGG-N 3301 G......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.succin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema succinifaciens str. 6091 ATCC 33096. ACCESSION No information KEYWORDS No information. SOURCE Treponema succinifaciens str. 6091 ATCC 33096. ORGANISM Treponema succinifaciens. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33096 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57738 isolate_name= 6091 BASE COUNT 338 a 406 c 548 g 231 t 2853 others ORIGIN 1 ~~~CUCCGGU CCCCUNGGGG GGCCNAGGAA AUAGGCAUGG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GGGC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCACG-CG (--CU----- ---------- ---------- 241 --------UG -)CG-CGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-C GAGU---AAC -AC-GUGGG- CGA--CGC-G C-CCUC---C -GGAC-G-GG 421 -AAU-AG-CC U--------- ------GC-- A(-GAAA-)U -GCAG-G--G UAAUGCC-GG 481 AU-GCG---- ---------- -------A-A CA-C--A-CG ---GGC-(-- --------UG 541 GA-------- -)-GCC---- GU-GC----G UG--GAAA-- ---GCCCC-- ---------- 601 --(------- ---CACG--- ---)------ ---------| --GGGG--C- G--CCG---- 661 ----GAGG-- AGC---G-|G CCCGC----- -GG|----CC C--AUCA-G- CUG-G---UA 721 GG-CG-GU-( GC-AAG-GG) -A-CCACC-U A|-GGC-UA- CGA------- -----CG-GG 781 U-AC-C-CG| -G-CCU--(A -AGA)-GGGC ----GG-A-- CGG-G|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-GC-G-A G-GAA--G-G CC(--GG-AA --)GG-UUGU AAA--GCCC| UUUU-GC-GC 1021 --GC-GAG-- GA-AUNA-GG --GGA-GGA( G----GGAA- -----U---) GCCU-UC-CC 1081 ---------- -------G-G U-GA-CUGU- A-GCG-C-GC G-AA--UAAG ---------C 1141 -GCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGCG-C-- 1201 NAG-CGUUGU NC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CC- 1261 U-GC-AAG|C CUN---GCGU G-AAA-UC-C CG-GGG-C(- NC-A)A-CCC -CG-N-AAC- 1321 -CGCG-CUGG G-AAC-UGCU G-GGCUU-GA GCC-----GC U-GU-GGCGC AGC-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUGCGA-- ---------- ---------- ---------G 1501 CGG--AC-GG CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CA-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------G|G -GU-GN-UCG -GG-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GC -CCGGN-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNNU-A G)--CGAGGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|--- -------C-A ---CAGG--- -GA----CCG 1981 -CCU-G--(- GAGA-)-CAG -G-CGGAG-- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| CCU-GU-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GCC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GGC-GG-A A-CU-G-CCG --GC(-GA-C AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -CA--CAGAG UGA-A-G-C- GA-GGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-A CGCAG-AAAA -CC-U-GCC- GUAGUCCGGA 2941 U-CGGAGUC- (UGAAAC-C- C)-GACUCCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-CGG- GG-AU-UCCC -GAA-G-CGG 3121 G-CAG-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-N N-CU-CU-NN A-AGGU-NUG CUU....... .......... 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.pectin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema pectinovorum. ACCESSION No information KEYWORDS No information. SOURCE Treponema pectinovorum. ORGANISM Treponema pectinovorum. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71237 ATCC 33768 = VPI D-36-DR-2 (T) NB: resequencing done by CRW; seq differs slightly from M71237 BASE COUNT 414 a 311 c 455 g 293 t 2903 others ORIGIN 1 ........UU GACCCGCAAG GGUUUGAGAA AUAAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -AAAC-GC-- UGGC-GGC-G -UGU-CU--U AAGC-AUGCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--CGU-A C-CCNU---U -GGAC-G-GG 421 -GAU-AG-UC G--------- ------GU-- A(-GAAA-)U -ACCG-G--G UAAUACC-GG 481 AU-AAG---- ---------- -------G-U CA-U--A-UA ---AGU-(-- --------UG 541 GA-------- -)-GAU---- AU-AU----G AG--GAAA-- ---GUGGC-- ---------- 601 --(------- ---UAUG--- ---)------ ---------| --GCCA--C- G--CCG---- 661 ----AAGG-- AAC---G-|G CCUGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GA-AAA-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CA-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G UC(--GG-AA --)GA-UUGU AAA--AUCC| UUUU-AU-UA 1021 --UU-GAA-- GA-AUAA-AC --UGU-ACA( G----GGAA- -----U---) GGUA-UA-GA 1081 ---------- -------G-G U-GA-CAGU- A-GGU-A-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUN-A) C-A-C-GUAA |-GGUG-C-- 1201 NAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-GC-AAG|C UUG---GUGU G-AAA-UA-C UG-GGG-C(- UU-A)A-CCC -CA-G-AAC- 1321 -UGCA-UUGA G-AAC-UGCA A-GACUA-GA GUC-----AG U-GA-GGGGA AAU-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -AUUUCCA-- ---------- ---------- ---------G 1501 CGC--AU-GA CUGACG-CUC AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-U-AUGU A--CA-CU-- -------A|G -GU-GU-CCG -GU-C----- ---------- 1681 -(-AU-NA)- ---------- ---------- ---------- --------GA -CUGGG-UGC 1741 CA--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUG..... .......... .......... .(....NA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACAAUA|--- -------C-A ---CACU--- -GA----UUA 1981 -UCA-A--(- GAGA-)-UUG -G-UAAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| AGU-GU-GAA |A--C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 GG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- A-GGC-GG-A A-CU-G-CCU --GC(-GA-C AA)-GCA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -AA--CAGAG UGA-A-G-C- GA-AGC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-A CGCAA-AAAA -CC-A-AUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGC-AC)-G GUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-CGA- GG-AU-ACCC -GAA-G-CCG 3121 G-UAG-A-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-C G-CU-GU-CG A-AGGU-AUG CUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.bryant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema bryantii str. RUS-1 ATCC 33254. ACCESSION No information KEYWORDS No information. SOURCE Treponema bryantii str. RUS-1 ATCC 33254. ORGANISM Treponema bryantii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33254 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57737 ATCC 33254 = DSM 1788 (T) isolate_name= RUS-1 BASE COUNT 400 a 337 c 479 g 306 t 2854 others ORIGIN 1 ~~~~~~~UCA UUAGCCUUCG GGCGAUUGAA AUAAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--CGU-A C-CUUU---G -UGAC-G-GG 421 -GAC-AG-CU C--------- ------CU-- A(-GAAA-)U -AGGA-G--A UAAUACC-GG 481 AU-ACG---- ---------- -------C-U GC-A--U-GU ---UGU-(-- --------CA 541 GA-------- -)-GGA---- CA-UG----C AG--GAAA-- ---GGAUC-- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --GAUU--C- G--CAC---- 661 ----GAAG-- AGC---G-|G CCCGC----- -GU|----AC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UA-GU 781 U-AC-C-CG| -G-CCU--(A -AGA)-GGGU ----GA-U-- CGG-G|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--GG-AA --)GG-UUGU AAA--AUCC| UUUU-AU-GA 1021 --CU-GAG-- GA-AUAA-GC --AGA-GUA( G----AGAA- -----A---) CGCU-UU-GU 1081 ---------- -------G-G U-GA-CUGU- A-GGU-C-AU G-AA--UAAG ---------C 1141 -AACGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GUUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GAGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 U-GC-AAG|U CUG---GUGU G-AAA-UG-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCG-UUGG A-AAC-UGCA G-AACUU-GA GUC-----GC U-GA-GGGGC NGC-C|AGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUGCCA-- ---------- ---------- ---------G 1501 CAG--AU-GA CUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--C 1621 AAC-U-AUGU A--CA-CU-- -------G|G -GU-GU-CCG -UU-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GA -AUGGG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AG. ........GU -UUAAUU-CG -(AUGNNA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|--- -------C-A ---CAGG--- -AA----UUA 1981 -UUU-A--(- GAGA-)-UAA -G-UAAG--- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| CCU-GU-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG UGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-A CGCAG-AAAG -CC-U-GCC- UCAGUCCGGA 2941 U-AGGAGUC- (UGAAAC-C- C)-GACUCCU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AC)-G GUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-GGG- GG-GU-ACCC -GAA-G-UCG 3121 U-GAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C C-AU-GC-CG A-AGGU-ACG UUC....... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN2.. ACCESSION No information KEYWORDS No information. SOURCE clone UN2. ORGANISM clone UN2. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63605|g960319 BASE COUNT 83 a 52 c 94 g 72 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GUUG-C-- 1201 GAG-CUUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- AUG-UAG-GC -G|-GU-CA- 1261 U-GC-AAG|C UUG---AUGU G-AAA-UC-C AU-GGG-C(- UC-A)A-CCC -GU-G-AAC- 1321 -UGCA-UUGA G-AAC-UAUG U-GACUU-GA GUU-----AC C-GA-GGGGA AAC-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUUCUA-- ---------- ---------- ---------U 1501 UGG--AU-AA CUGACG-CUG AG-G------ -------UA- C-GAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.maltop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema maltophilum.. ACCESSION No information KEYWORDS No information. SOURCE Treponema maltophilum. ORGANISM Treponema maltophilum. REFERENCE 1 AUTHORS Wyss,C., Choi,B.K., Schupbach,P., Guggenheim,B. and Gobel,U .B. TITLE Treponema maltophilum sp. nov., a small oral spirochete isolated from human periodontal lesions JOURNAL Int. J. Syst. Bacteriol. 46 (3), 745-752 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87140|g1498248 biol_source= periodontitis patient BR NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 418 a 304 c 464 g 310 t 2880 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAG-GG (--GC----- ---------- ---------- 241 --------UU -)CC-CGCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UUUGAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--CAU-A C-CUUU---U -AGUU-G-GG 421 -GAU-AG-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--G UAAUACC-GA 481 AU-GUG---- ---------- -------A-C CG-U--A-U- ---UUA-(-- --------UU 541 AG-A------ -)-AGG---- AU-AC----G AG--GAAA-- ---GGAGC-- ---------- 601 --(------- ---UAAG--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----AAAG-- AAU---G-|G CUCGC----- -GG|----CC C--AUUAUG- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A A-GAA--U-G CC(--GA-AA --)GG-UUGU AAA--AUCC| UUUU-AA-GC 1021 --CU-GAU-- GA-AUAA-GC --ACA-AUA( G----GGAA- -----U---) GAUU-GU-GC 1081 ---------- -------G-G U-GA-CCGU- A-GGG-C-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GA-UA- 1261 G-GC-AAG|C UUG---GUGU G-AAA-UG-U UA-CAG-C(- UU-A)A-CUG -UG-A-GAC- 1321 -AGCA-UUGA G-AAC-UGCC G-AUCUU-GA AUU-----AC U-GA-AGGGU AAC-C|AGAA 1381 UU-CCACGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-UGGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACCG-- ---------- ---------- ---------G 1501 CAG--AU-AA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-CUG -GC------- ---------- 1681 -(AUA-AC)A ---------- ---------- ---------- ---------G -CUGGG-UGC 1741 CA--AA---- --GC-(AAA- ---C)G-UG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGGUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|--- -------G-U ---AUCU--- -GA----UGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| AGG-UA-CAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -AA--CAAAG UGA-A-G-C- GA-AGC-U(G 2881 -UAA)AGCG- ---------- GA-GCAAA-A CGCAA-AAAA -GC-U-AUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGC-AC)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-AGA- GG-GU-ACCC -GAA-G-UCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-GC-CG A-AGNU-AUG CUU-UG-UA- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGUC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp4012 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp40-12. str. sp40-12. ACCESSION No information KEYWORDS No information. SOURCE str. sp40-12. str. sp40-12. ORGANISM str. sp40-12. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89049|g1045278 isolate_name= sp40-12 BASE COUNT 320 a 340 c 540 g 272 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUG-CA (--GC----- ---------- ---------- 241 --------GA -)UG-CACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--CGC-A U-CCUG---A -GGUU-G-GG 421 -GAC-AG-CC N--------- ------GU-- A(-GAAA-)U -GCCG-G--G UAAUACC-GG 481 AU-ACG---- ---------- -------C-U UC-U--G-C- ---UGC-(-- --------UG 541 GU-G------ -)-GCG---- GC-GG----A AG--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCGU--C- G--UCU---- 661 ----UCGG-- AGC---G-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-UG- CGA------- -----UG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-G|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A U-GAA--G-G CU(--UG-AU --)UG-UUGU AAA--GUUC| UUUU-GG-AU 1021 --CG-GGC-- GA-AGGA-GC --GGG-GGA( G----GGAA- -----U---) GCCC-CU-GU 1081 ---------- -------G-G U-GA-CGGU- A-CGG-U-CU G-AA--UAAG ---------C 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- AUG-UAG-GC -G|-GU-AC- 1261 G-GC-AAG|C AUG---GCGU G-AAA-GG-C GG-GGG-C(- UU-A)A-CUC -CU-G-GAA- 1321 -UGCG-CCGU G-GAC-UGUC G-UGCUU-GA GUU-----UC U-GA-AGGGG AGU-C|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G GA-G)GCAG- -GCUUCUG-- ---------- ---------- ---------G 1501 CAG--GG-WA CUGACG-CUG AG-G------ -------UA- C-GAAG-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------A|G -GU-GU-CUG -UC-U----- ---------- 1681 -(-UU-GC)C ---------- ---------- ---------- --------GG -GCGGG-CGC 1741 CG--AA---- --GC-(GAA- ---C)G-CG- GUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CNGUGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGGUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-G ---AGCU--- -GA----UCU 1981 -GGC-G--(- GAGA-)-CGC -U-GGGG--- CG-------- ---CG----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CG-------- ----CG---| GGC-UU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UAG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AU--GGUC-C AG-CAG---- ---------- ---------- ---G(---CG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GC(-GG-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-U-GA -GA--CAGAG CGA-A-G-C- AG-GGC-A(G 2881 -UGA)UGCG- ---------- GA-GCGAA-G CGCUU-AAAG -GC-G-GCC- GUAGUUCGGA 2941 U-CGGAGUC- (UGAAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GC-AGG- GG-GC-GCCC -GAA-G-CCG 3121 G-UAG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGAG-G-C G-CC-GU-CG A-AGNC-GCG UUU-UG-UA- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCCGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN39 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN39.. ACCESSION No information KEYWORDS No information. SOURCE clone UN39. ORGANISM clone UN39. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63615|g960329 BASE COUNT 78 a 54 c 98 g 68 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GUUG-C-- 1201 GAG-CNUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-AU- 1261 G-GC-AAG|C CUG---AUGU G-AAA-UC-U CC-GGG-C(- UU-A)A-CCC -NG-A--GG- 1321 -UGCA-UUGG G-AAC-UUUC A-UACUU-GA AUU-----GC U-GA-GGGGA AGC-C|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUUCUG-- ---------- ---------- ---------G 1501 CAG--AC-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-C.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN10 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN10.. ACCESSION No information KEYWORDS No information. SOURCE clone UN10. ORGANISM clone UN10. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63588|g960302 BASE COUNT 78 a 56 c 99 g 66 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GUUG-C-- 1201 GAG-CNUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-AU- 1261 G-GC-AAG|C CUG---AUGU G-AAA-UC-U CC-GGG-C(- UC-A)A-CCC -GG-A--GG- 1321 -UGCA-UUGG G-AAC-UUCC A-UACUU-GA AUU-----GC U-GA-GGGGA AGC-C|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUUCUG-- ---------- ---------- ---------G 1501 CAG--AC-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-C.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN100 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN100.. ACCESSION No information KEYWORDS No information. SOURCE clone UN100. ORGANISM clone UN100. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63589|g960303 BASE COUNT 78 a 54 c 100 g 68 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GUUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-AU- 1261 G-GC-AAG|C CUG---AUGU G-AAA-UC-U CC-GGG-C(- UU-A)A-CCC -GG-A--GG- 1321 -UGCA-UUGG G-AAC-UUUC A-UACUU-GA AUU-----GC U-GA-GGGGA AGC-C|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUUCUG-- ---------- ---------- ---------G 1501 CAG--AC-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-C.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.2 TRP.PALLIDUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.2 TRP.PALLIDUM_SUBGROUP. ORGANISM 2.13.3.2.2 TRP.PALLIDUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.zuelze 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta zuelzerae. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta zuelzerae. ORGANISM Spirochaeta zuelzerae. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88725 biol_source= H2S-containing freshwater mud NB: former name Spirochaeta zuelzeri BASE COUNT 395 a 329 c 464 g 321 t 2867 others ORIGIN 1 .NNUCUUGAU CCCGCAAGGG AUUUAGAGNA UAUAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GGAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GN-U NAGU---AAC -NC-GUGGG- UGA--CCU-A C-CCUU---G -GNUN-G-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -AGUG-G--A UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CU-U--U-U- ---UGC-(-- --------UU 541 UG-------- -)-GCN---- GA-GA----A AG--GAAA-- ---UCAGGC- ---------- 601 --(------- ---UACG--- ---)------ ---------| -GCCUN--N- N--CUC---- 661 ----GAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUCC| UUUU-GC-UG 1021 --AU-GAA-- GA-AUAA-GU --GGU-GUA( G----GGAA- -----U---) GACA-UC-AU 1081 ---------- -------G-A U-GA-CAUU- A-GUC-G-GU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|C CUG---GUGU G-AAA-UC-C UG-CAG-C(- UU-A)A-CUG -UA-G-AAU- 1321 -UGCA-UUGG G-UAC-UGCC A-GACUU-GA AUC-----AC A-GA-GGGGA AAC-U|AGAA 1381 UU-CCAGGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UC-UGGAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUA-- ---------- ---------- ---------G 1501 CUG--AU-GA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GU -CUCAG-UGC 1741 CA--AA---- --GC-(UAA- ---C)G-UG- AUAA-GUGUA C|C|G-CCU- G-GGAAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- -------A-A ---GUGG--- -AA----UGG 1981 -UAU-A--(- GAGA-)-UAU -A-UCAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| CCG-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GC -UA--CAAAG CGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AC-GCAAA-A CGCAA-AAAA -GC-U-ACC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGA- GG-GU-ACCC -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-GU-GC-CG A-AGGU-ACG CUU-AG-UU- AGG-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.medium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema medium str. G7201. ACCESSION No information KEYWORDS No information. SOURCE Treponema medium str. G7201. ORGANISM Treponema medium. REFERENCE 1 AUTHORS Umemoto,T., Nakazawa,F., Hoshino,E., Okada,K., Fukunaga,M. and Namikawa,I. TITLE Treponema medium sp. nov., isolated from human subgingival dental plaque JOURNAL Int. J. Syst. Bacteriol. 47 (1), 67-72 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85437|g1871462 isolate_name= G7201 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 287 c 430 g 291 t 2995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGG---AAC -AC-GUGGG- UAA--UCU-A C-CCUU---A -AGAU-G-GG 421 -GAU-AG-CU G--------- ------CU-- A(-GAAA-)U -AGCA-G--G UAAUACC-GA 481 AU-ACA---- ---------- -------C-U CA-G--U-GC ---UUC-(-- --------AU 541 AA-------- -)-GGG---G UA-UU----G AG--GAAA-- ---GGAAGC- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GAGG-- AUG---A-|G CUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CU(--GA-AA --)AG-UUGU AAA--AUCC| UUUU-GU-UG 1021 --AU-GAA-- GA-AUAA-GG --GUG-AGA( G----GGAA- -----U---) GCUC-AU-CU 1081 ---------- -------G-A U-GA-CGGU- A-AUC-G-AC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|C CUG---AUGU G-AAA-UC-C UG-GGG-C(- UU-A)A-CCC -UA-G-AAU- 1321 -AGCA-UUGG G-UAC-UGUG U-AACUU-GA AUU-----AC G-GA-AGGGA AAC-U|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-AA UUGACG-CUG AG-A------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AA-GA)- ---------- ---------- ---------- --------GC -UUCAG-UGC 1741 CA--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGGUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- -------U-A ---GUAG--- -AA----GGU 1981 -CUU-A--(- GAGA-)-UAA -G-GCCG--- GG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CC---| CUG-CU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----CUUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAAAG CGA-A-G-C- AA-CAC-C(G 2881 -UAA)GGUG- ---------- GA-GCAAA-C CGCAA-AAAA -GC-A-AUC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AC.... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.dentic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema denticola str. W ATCC 33520. ACCESSION No information KEYWORDS No information. SOURCE Treponema denticola str. W ATCC 33520. ORGANISM Treponema denticola. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33520 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71236 isolate_name= W BASE COUNT 410 a 325 c 456 g 311 t 2874 others ORIGIN 1 ~~~~NAACCG CUCUUUAAGG GCGGCUUGAA AUAAUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GAAC 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-G C-CCUG---A -AGAU-G-GG 421 -GAU-AG-CU A--------- ------GU-- A(-GAAA-)U -AUUA-G--A UAAUACC-GA 481 AU-GUG---- ---------- -------C-U CA-U--U-U- ---ACA-(-- --------UA 541 AA-------- -)-GGU---- AA-AU----G AG--GAAA-- ---GGAGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCUC--N- N--CUU---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GU-GU 961 G-A-AU-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUUC| UUUU-GC-AG 1021 --AU-GAA-- GA-AUAA-GA --AGA-AGA( G----GGAA- -----U---) GCUU-CU-UU 1081 ---------- -------G-A U-GA-CGGU- A-GUC-AUGC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGN-N-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- AUG-UAG-GC -G|-GU-UA- 1261 G-GU-AAG|C CUG---GUGU G-AAA-UC-U AC-GAG-C(- UC-A)A-CUC -GU-A-AAC- 1321 -UGCA-UUGG G-UAC-UGCU U-GACUU-GA AUC-----AC G-GA-GGGGA AAC-C|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA UUGACG-CUG AU-A------ -------UA- C-GAAG-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(-AA-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--AC---- --GC-(AAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGAAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--A 1861 C-A--CA-AG CGG....... ........GU -UUAAUU-CG .(.......C G)--CGAGAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- -------A-A ---GAGC--- -AA----UGA 1981 -CAU-A--(- GAGA-)-UAU -G-GCAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| GCU-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAAAU CGA-A-G-C- GA-CAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-A CGCAA-AAAA -GC-A-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AC)-G GUG-CGGUG- AAUAC-GUU- CCU-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-CGA- GG-GU-ACCU -GAA-G-UCG 3121 C-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-GU-GC-CG A-AGGU-ACG UUU....... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.phaged 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema phagedenis str. K5. ACCESSION No information KEYWORDS No information. SOURCE Treponema phagedenis str. K5. ORGANISM Treponema phagedenis. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57739 isolate_name= K5 BASE COUNT 407 a 320 c 484 g 322 t 2843 others ORIGIN 1 CAGGCUCUCU UAGCAAUAGG AGAGNUUGAA AUAAUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCNG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--UCU-A C-CCUU---A -AGAU-G-GG 421 -GAU-AG-CU C--------- ------CU-- A(-GAAA-)U -AGGA-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------C-U UA-U--A-C- ---GGA-(-- --------UA 541 AA-------- -)-GCC---- GU-AU----A AG--GAAA-- ---GGAGGC- ---------- 601 --(------- ---UGCG--- ---)------ ---------| --GCCN--N- G--CUU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUAUG- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUUC| UUUU-GC-CG 1021 --AU-GAA-- GA-AUAA-GA --GGA-UGA( G----GGAA- -----U---) GCGU-CC-UU 1081 ---------- -------G-A U-GA-CGGU- A-GUC-GAGC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-N-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GG-UU- 1261 G-GU-AAG|C CUG---NUGU G-AAA-UA-C UC-AAG-C(- UU-A)A-CUU -GA-G-AAU- 1321 -UGCA-UUGG G-UAC-UGCC A-GUCUU-GA AUC-----AC G-GA-GGGGA AAC-C|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AA-GA)- ---------- ---------- ---------- --------GC -UUCAG-UGC 1741 CG--GC---- --GC-(AAA- ---C)G-CA- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-UCUUA-CC UGG-GU-UUG ACA-UC|--- -------A-A ---AAGC--- -AA----UAU 1981 -UAU-A--(- GAGA-)-UAU -G-GUAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| GCU-UU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GUC- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAAAG UGA-A-G-C- GA-GAC-U(G 2881 -UGA)GGUU- ---------- AA-GCAAA-U CGCAA-AAAA -GC-A-AUC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AC)-G GUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGA- GG-GU-ACCC -GAA-G-UCG 3121 C-CAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-G-C G-GU-GC-CG A-AGGU-AUG UUU-GG-CA- NGG-A..... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.pallid.A 4376 bp RNA RNA 16-JUL-1998 DEFINITION Treponema pallidum.; . ACCESSION AE0012 4 AE00 520 KEYWORDS . SOURCE Treponema pallidum. ORGANISM Treponema pallidum. REFERENCE 1 (bases 1 to 12774) AUTHORS ,J., Khalak,H., Richardson,D., Howell,J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey ,L., Weidman,J., Smith,H.O. and Venter,J.C. Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G ., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson TITLE spirochete Complete genome sequence of Treponema pallidum, the syphilis JOURNAL Science 281 (5375), 375-388 (1998) STANDARD No information REFERENCE 2 (bases 1 to 12774) AUTHORS Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson,J., Khalak,H., Richardson,D., Howell, J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey,L., Weidman,J., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (06-MAR-1998) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE001204 BASE COUNT 368 a 326 c 503 g 307 t 2872 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~GCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAGC-GA (--AU----- ---------- ---------- 241 --------UU -)UC-GUUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-G C-CUUU---G -AGAU-G-GG 421 -GAU-AG-CC U--------- ------CU-- A(-GAAA-)U -AGGG-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CU-U--U-UG ---GAC-(-- --------GU 541 A--------- -)-GUC---U UU-GA----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UGCG--- ---)------ ---------| --GCCU--C- G--CUC---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GA|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----UG-GG 781 U-AU-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-A|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACC-GC-GU 961 G-G-AU-G-A G-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-GC-CG 1021 --AC-GAA-- GA-AUGA-GG --ACG-GGA( G----GGAA- -----U---) GCCC-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-GUC-GUGC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-CAG-GC -G|-GA-CU- 1261 G-GU-AAG|C CUG---GUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-CUGG G-UAC-UGCU G-GUCUA-GA AUC-----AC G-GA-GGGGA AAC-C|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GU -CUCGG-CGC 1741 CG--AC---- --GC-(GAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GU-UUG ACA-UC|--- -------A-A ---GAGG--- -AG----CGC 1981 -CGU-A--(- GAAA-)-UGC -G-GUGG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- UA-------- ----CG---| CCU-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UG ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAGAG CGA-U-G-C- GA-GGU-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-C CGCAA-AAAG -GC-A-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AU)-G GUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-AU-ACCC -GAA-G-UCA 3121 C-UAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-GU-GC-CG A-AGGU-AUG UUU-GG-UA- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|Uaaga gaaagg~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.pallid.B 4376 bp RNA RNA 16-JUL-1998 DEFINITION Treponema pallidum.; . ACCESSION AE0012 8 AE00 520 KEYWORDS . SOURCE Treponema pallidum. ORGANISM Treponema pallidum. REFERENCE 1 (bases 1 to 12697) AUTHORS ,J., Khalak,H., Richardson,D., Howell,J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey ,L., Weidman,J., Smith,H.O. and Venter,J.C. Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G ., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson TITLE spirochete Complete genome sequence of Treponema pallidum, the syphilis JOURNAL Science 281 (5375), 375-388 (1998) STANDARD No information REFERENCE 2 (bases 1 to 12697) AUTHORS Fraser,C.M., Norris,S.J., Weinstock,G.M., White,O., Sutton,G.G., Dodson,R., Gwinn,M., Hickey,E.K., Clayton,R., Ketchum,K.A., Sodergren,E., Hardham,J.M., McLeod,M.P., Salzberg,S., Peterson,J., Khalak,H., Richardson,D., Howell, J.K., Chidambaram,M., Utterback,T., McDonald,L., Artiach,P., Bowman,C., Cotton,M.D., Fujii,C., Garland,S., Hatch,B., Horst,K., Roberts,K., Watthey,L., Weidman,J., Smith,H.O. and Venter,J.C. TITLE Direct Submission JOURNAL Submitted (06-MAR-1998) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE001208 BASE COUNT 367 a 325 c 501 g 307 t 2876 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAGC-GA (--AU----- ---------- ---------- 241 --------UU -)UC-GUUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-G C-CUUU---G -AGAU-G-GG 421 -GAU-AG-CC U--------- ------CU-- A(-GAAA-)U -AGGG-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CU-U--U-UG ---GAC-(-- --------GU 541 AG-------- -)-GUC---U UU-GA----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UGCG--- ---)------ ---------| --GCCU--C- G--CUC---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GA|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----UG-GG 781 U-AU-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-A|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACC-GC-GU 961 G-G-AU-G-A G-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-GC-CG 1021 --AC-GAA-- GA-AUGA-GG --ACG-GGA( G----GGAA- -----U---) GCCC-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-GUC-GUGC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-CAG-GC -G|-GA-CU- 1261 G-GU-AAG|C CUG---GUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-CUGG G-UAC-UGCU G-GUCUA-GA AUC-----AC G-GA-GGGGA AAC-C|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GU -CUCGG-CGC 1741 CG--AC---- --GC-(GAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GU-UUG ACA-UC|--- -------A-A ---GAGG--- -AG----CGC 1981 -CGU-A--(- GAAA-)-UGC -G-GUGG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- UA-------- ----CG---| CCU-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UG ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAGAG CGA-U-G-C- GA-GGU-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-C CGCAA-AAAG -GC-A-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AU)-G GUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-AU-ACCC -GAA-G-UCA 3121 C-UAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-GU-GC-CG A-AGGU-AUG UUU-GG-UA- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|Uaaga gaaa~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.pallid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema pallidum str. Nichols. ACCESSION No information KEYWORDS No information. SOURCE Treponema pallidum str. Nichols. ORGANISM Treponema pallidum. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88726 isolate_name= Nichols BASE COUNT 371 a 336 c 511 g 317 t 2841 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGU-G -CGU-UU--U AAGC-AUGCA A-GUC-GAAC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAGC-GA (--AU----- ---------- ---------- 241 --------UU -)UC-GUUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGUG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-G C-CUUU---G -AGAU-G-GG 421 -GAU-AG-CC U--------- ------CU-- A(-GAAA-)U -AGGG-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CU-U--U-UG ---GAC-(-- --------GU 541 AG-------- -)-GUC---U UU-GA----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UNCG--- ---)------ ---------| --GCCU--C- G--CUC---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GA|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----UG-GG 781 U-AU-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-A|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACC-GC-GU 961 G-G-AU-G-A G-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-GC-CG 1021 --AC-GAA-- GA-AUGA-GG --ACG-GGA( G----GGAA- -----U---) GCCC-GU-UU 1081 ---------- -------G-A U-GA-CGGU- A-GUC-GUGC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-CAG-GC -G|-GA-CU- 1261 G-GU-AAG|C CUG---GUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-CUGG G-UAC-UGCU G-GUCUA-GA AUC-----AC G-GA-GGGGA AAC-C|GGAA 1381 UU-CCAAGU- GUA-GGG(-G UGGAA)-UCU -GU-AGAU-A UU-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA UUGACG-CUG AG-G------ -------UG- C-GAAG-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GG-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GU -CUCGG-CGC 1741 CG--AC---- --GC-(GAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC CGG-GU-UUG ACA-UC|--- -------A-A ---GAGG--- -AG----CGC 1981 -CGU-A--(- GAAA-)-UGC -G-GUGG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- UA-------- ----CG---| CCU-CU-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UG ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GC -UA--CAGAG CGA-U-G-C- GA-GGU-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-C CGCAA-AAAG -GC-A-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AU)-G GUG-CGGUG- AAUGU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-AU-ACCC -GAA-G-UCA 3121 C-UAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-GU-GC-CG A-AGGU-AUG UUU-GG-UA- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.3 SPI.STENOSTREPTA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.3 SPI.STENOSTREPTA_SUBGROUP. ORGANISM 2.13.3.2.3 SPI.STENOSTREPTA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.stenos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta stenostrepta str. Z1 ATCC 25083. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta stenostrepta str. Z1 ATCC 25083. ORGANISM Spirochaeta stenostrepta. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25083 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88724 ATCC 25083 = DSM 2028 isolate_name= Z1 BASE COUNT 387 a 343 c 493 g 297 t 2856 others ORIGIN 1 ~~~~~NCUUU GGUCUUCGGN CCGUAAGAAA UAUAUCAUGG NNAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGN-AUGCA A-GUC-GAGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-A C-CUUU---A -GGUU-G-GG 421 -GAU-AG-CC A--------- ------UU-- A(-GAAA-)U -AGUG-G--G UAAUACC-GA 481 AU-GUG---- ---------- -------G-U UG-C--G-G- ---GGC-(-- --------UU 541 UG-------- -)-GCC---- UU-GU----A AA--GAAA-- ---GGAG--- ---------- 601 --(------- ---CUAG--- ---)------ ---------| ---CUC--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CCCNC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GU-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUCC| UUUU-GU-CG 1021 --AC-GAA-- GA-AUAA-GU --GGG-GGA( G----GGAA- -----U---) GCCC-UC-AU 1081 ---------- -------G-A U-GA-CGUU- A-GUC-G-GC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GU-CC- 1261 U-GU-AAG|C CCN---ACGU G-AAA-UA-C UG-GAG-C(- UU-A)A-CUC -CA-G-AAC- 1321 -UGCG-CCGG G-AAC-UGUA G-GACUU-GA GUC-----AU G-GA-AGGGG AGU-U|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUCCUG-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------UA- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-GA-GC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- -------C-U ---GAGG--- -AA----UAC 1981 -GGU-A--(- GAGA-)-UAU -C-GUAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| UCG-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-NG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG CGC-A-G-C- GA-ACC-C(G 2881 -CGA)GGGAU ---------- AA-GCGAA-C CGCAA-AAAG -CC-G-GCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GU-ACCC -GAA-G-CCG 3121 U-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGA-G-C G-AC-GU-CG A-AGGU-AUG GCU-AG-UU- ANN-ANNG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)AG .......... GAUCACCUCC 3361 UUN~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trp.spH1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Treponema sp. str. H1 Leschine. ACCESSION No information KEYWORDS No information. SOURCE Treponema sp. str. H1 Leschine. ORGANISM Treponema sp. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco ,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71240 isolate_name= H1 Leschine BASE COUNT 374 a 348 c 497 g 284 t 2873 others ORIGIN 1 ....CUUUCG GGCUUCGGGC CCGUAAGANA UAUAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AANN-AUGCA A-GUC-GAGC 121 G--------- -----GUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-A C-CCUU---A -GGAU-G-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -AGUG-G--G UAAUACC-GA 481 AU-GUG---- ---------- -------G-U UA-C--C-G- ---GGC-(-- --------UG 541 UG-------- -)-GCC---- UN-GU----A AA--GAAA-- ---GGAGC-- ---------- 601 --(------- ---UUU---- ---)------ ---------| --GCUC--C- G--CCU---- 661 ----GAGG-- AUG---G-|G CCCNC----- -GU|----CC C--AUUA-G- CUC-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--NA-AA --)GG-UUGU AAA--AUCC| UUUU-GU-CG 1021 --AU-GAA-- GA-AUAA-GC --AUG-GGA( G----GGAA- -----U---) GCCC-GU-GU 1081 ---------- -------G-A U-GA-CGUU- A-GUC-G-GC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUN-A) C-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CC- 1261 U-GU-AAG|C CCN---GCGU G-AAA-AC-C UG-GAG-C(- UC-A)A-CUC -CG-G-GCC- 1321 -UGCG-CUGG G-AAC-UGCG G-GACUA-GA GUC-----AU G-GA-AGGGA AGU-U|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-AU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GC-GU-UGG -GU-C----- ---------- 1681 -(-GA-GU)- ---------- ---------- ---------- --------GA -CUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|--- -------C-G ---GGGG--- -AA----GGC 1981 -GGU-A--(- GAGA-)-UAU -C-GCC---- CG-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----CG---| CCG-CC-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG CGA-A-G-C- AA-AGC-C(G 2881 -CGA)GGUAA ---------- GA-GCAAA-G CGCAA-AAAG -CC-G-AYC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AC)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GU-ACCC -GAA-G-CCG 3121 G-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-C G-CU-GU-CG A-AGGU-ACG UCU-AG-UG- AGG-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.4 SPI.SPMAST_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.4 SPI.SPMAST_SUBGROUP. ORGANISM 2.13.3.2.4 SPI.SPMAST_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A56n 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91479 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 85 a 60 c 124 g 74 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGG-C-- 1201 GNN-CGUUGU UG-GGAAUUA -CU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|C UUG---GCGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-GAA- 1321 -UGCG-UUGA G-AAC-UGCG A-GGCUU-GA GUG-----AC G-GA-GAGGG AGC-U|AGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAG-A UC-AGGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GCUCCUG-- ---------- ---------- ---------G 1501 CCG--AU-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 UC-AAN-NN- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGN N--NN-NN-- -------A|G -GU-GC-UGG -GG-C----- ---------- 1681 -(-GG-AU)- ---------- ---------- ---------- --------GC -UUCAG.... 1741 .......... ...C-(UAA- ---C)G-UG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.spMast 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta sp.. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta sp. ORGANISM Spirochaeta sp. REFERENCE 1 AUTHORS Berchtold,M., Ludwig,W. and Konig,H. TITLE 16S rDNA sequence and phylogenetic position of an uncultivated spirochete from the hindgut of the termite Mastotermes darwiniensis Froggatt JOURNAL FEMS Microbiol. Lett. 123, 269-273 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79548|g551667 legacy_attribute= lab_host=Mastotermes darwiniensis BASE COUNT 385 a 334 c 479 g 300 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--UCU-A C-CCUU---A -GGAU-G-GG 421 -GAU-AG-CC U--------- ------GU-- A(-GAAA-)U -AUAG-G--A UAAUACC-GA 481 AU-ACC---- ---------- -------C-U UG-C------ ---GGC-(-- -------UCU 541 UG-U------ -)-GCC---- ---GU----A AG--GAAAC- ---GGAGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GUUC--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-CCACC-A A|-GAC-AG- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUCC| UUUU-GC-UG 1021 --UU-GAA-- GA-AUAA-GC --GCG-GGA( G----UUAC- -----U---) GCCC-GC-GU 1081 ---------- -------G-A U-GA-CGUU- A-AGC-A-GU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|C UUG---AUGU G-AAA-GC-C CG-CGG-C(- UU-A)A-CCG -CG-G-AAC- 1321 -UGCA-UUGA G-AAC-UGCG G-GACUC-GA GUC-----AU A-GA-GGGGA AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -AC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -ACUUCUA-- ---------- ---------- ---------G 1501 CUA--AU-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -AC-C----- ---------- 1681 -(-GU-GC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-UG- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG AAA-UG|--- -------C-A ---GGGG--- -AA----UGA 1981 -UAC-A--(- GAGA-)-UGU -A-UCAG--- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| UCC-CU-GUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG CGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUCA ---------- UA-GCAAA-C CGCAA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-AU-ACCC -GAA-G-CCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-GU-CG A-AGGU-AUG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp5_17 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp5-17. str. sp5-17. ACCESSION No information KEYWORDS No information. SOURCE str. sp5-17. str. sp5-17. ORGANISM str. sp5-17. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89043|g1045282 isolate_name= sp5-17 BASE COUNT 389 a 323 c 471 g 303 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -CGU-NU--U AAGC-AUGCA A-GUC-GAGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--UCU-A C-CUUU---A -GGAU-G-GG 421 -GAU-AG-CC G--------- ------CU-- A(-GAAA-)U -AGCG-G--A UAAUACC-GA 481 AU-AUC---- ---------- -------C-U UG-C------ ---AAC-(-- -------UCU 541 UG-U------ -)-GUU---- ---GU----A AG--GAAAC- ---GGAGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GUUC--C- G--CCU---- 661 ----AUUG-- AUG---A-|G CCCGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-CCACC-A A|-GAC-AG- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUCC| UUUU-GC-UA 1021 --CU-GAA-- GA-AUAA-GU --AUG-GGA( G----UUAC- -----U---) GCCC-GU-AU 1081 ---------- -------G-A U-GA-CGUU- A-GGU-A-GU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-UU- 1261 C-GU-AAG|C UUG---AUGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-AAU- 1321 -UGCA-UUGA G-AAC-UGCG A-GACUA-GA GUC-----AU A-GA-GGGGA AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -AC-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCKA-- ---------- ---------- ---------G 1501 CUA--AU-GA CUGACG-CUG AG-G------ -------NG- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-GU-GC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-UG- AUAA-GUGUA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG AAA-UG|--- -------C-A ---GGGG--- -AA----UGA 1981 -UAC-A--(- GAGA-)-UGU -G-UCAG--- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| UCC-CU-GUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCC- 2281 AG--UUAC-U AA-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-GA-CU-C- U-GGC-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG CGA-U-G-C- GA-AAC-C(G 2881 -CGA)GGUCA ---------- UA-GCAAA-C CGCAA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-AU-ACCC -GAA-G-CCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-GU-CG A-AGGU-AUG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UCCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.5 ENVIRONMENTAL_CLONE_UN114. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.5 ENVIRONMENTAL_CLONE_UN114. ORGANISM 2.13.3.2.5 ENVIRONMENTAL_CLONE_UN114. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN114 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN114.. ACCESSION No information KEYWORDS No information. SOURCE clone UN114. ORGANISM clone UN114. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63597|g960311 BASE COUNT 80 a 58 c 104 g 59 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 A-GU-AAG|U CUG---GGGU G-AAA-GC-C CG-CGG-C(- UC-A)A-CCG -CG-G-GAC- 1321 -UGCC-UUGG A-AAC-UACU A-GGCUA-GA GUC-----AU G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -AU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CA-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.2.6 ENV.SPUN21_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.2.6 ENV.SPUN21_SUBGROUP. ORGANISM 2.13.3.2.6 ENV.SPUN21_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN21 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN21.. ACCESSION No information KEYWORDS No information. SOURCE clone UN21. ORGANISM clone UN21. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63606|g960320 BASE COUNT 80 a 53 c 101 g 66 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CNUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CUG---GGGU G-AAA-UC-U AU-CGG-C(- UU-A)A-CCG -GU-A-AAU- 1321 -AGCC-UUGG A-AAC-UGGA U-GACUC-GA GUC-----AU G-GA-GGGGU AGU-U|GGAA 1381 UU-CCGCGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUACUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN90 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN90.. ACCESSION No information KEYWORDS No information. SOURCE clone UN90. ORGANISM clone UN90. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63638|g960352 BASE COUNT 80 a 53 c 101 g 66 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CNUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CUG---GGGU G-AAA-UC-U AU-CGG-C(- UU-A)A-CCG -GU-A-AAU- 1321 -AGCC-UUGG A-AAC-UGGA U-GACUC-GA GUC-----AU G-GA-GGGGU AGU-U|GGAA 1381 UU-CCGCGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUACUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN28 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN28.. ACCESSION No information KEYWORDS No information. SOURCE clone UN28. ORGANISM clone UN28. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63610|g960324 BASE COUNT 80 a 54 c 99 g 66 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CNUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CUG---UGGU G-AAA-UG-G CA-GGG-C(- UC-A)A-CCC -UG-U-CAC- 1321 -UGCC-AUGG A-AAC-UGUA U-AACUG-GA GUC-----AU G-GA-GGGGU AGU-U|GGAA 1381 UU-CCGCGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUACUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-NU- CG-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN1.. ACCESSION No information KEYWORDS No information. SOURCE clone UN1. ORGANISM clone UN1. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63587|g960301 BASE COUNT 81 a 54 c 100 g 66 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CUG---UGGU G-AAA-UG-G CA-GGG-C(- UC-A)A-CCC -UG-U-CAC- 1321 -UGCC-AUGG A-AAC-UGUA U-AACUA-GA GUC-----AU G-GA-GGGGU AGU-U|GGAA 1381 UU-CCGCGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUACUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN96 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN96.. ACCESSION No information KEYWORDS No information. SOURCE clone UN96. ORGANISM clone UN96. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63641|g960355 BASE COUNT 77 a 54 c 106 g 64 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---GCGU G-AAA-GG-C GG-GAG-C(- UU-A)A-CUC -CC-G-GAC- 1321 -UGCG-UUGG A-AAC-UGUG G-AACUA-GA GUC-----AU G-GA-GGGGU AGU-U|GGAA 1381 UU-CCGCGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UG-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUACUA-- ---------- ---------- ---------G 1501 CCA--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp4011 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp40-11. str. sp40-11. ACCESSION No information KEYWORDS No information. SOURCE str. sp40-11. str. sp40-11. ORGANISM str. sp40-11. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89048|g1045277 isolate_name= sp40-11 BASE COUNT 368 a 334 c 494 g 278 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGC-G-GS (--SC----- ---------- ---------- 241 --------AA -)CC-CUGCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-- G-CCUG---A -GGAUUG-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -AGUG-G--G UAAUACC-GA 481 AU-GUG---- ---------- -------G-U UA-U--G--- G--GGC-(-- --------UU 541 UG-------- -)-GCG---- CC-AU----A AA--GAAAG- ---GGGCG-- ---------- 601 --(------- ---AUAG--- ---)------ ---------| --CCCU--G- U--CCU---- 661 ----GA-G-- AUG---G-|G CCCGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A C-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUCC| UUUU-AU-CG 1021 --CC-GAA-- GA-AUAA-GG --CAG-GUA( G----GGAA- -----U---) GAUC-UG-CU 1081 ---------- -------G-A U-GA-CGUU- A-GGC-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CUG---GUGU G-AAA-GG-C AG-GGG-C(- UC-A)A-CUC -CU-G-GAC- 1321 -UGCG-CCGG A-AAC-UGUG U-AACUG-GA GUC-----AU G-GA-GGGGG AGU-C|GGAA 1381 UU-CCGAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -ACUUCCA-- ---------- ---------- ---------G 1501 CCG--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-GA-GC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--GA---- --GC-(GAA- ---C)G-UG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CUGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-A ---GGGG--- -GA----UGG 1981 -UGC-A--(- GAGA-)-UGU -A-UCAG--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CCC-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GA-G-(UUAA -GU)-CUCGC AA-------- CGAG-C--CC AACCC-CU-A |-CU--GCC- 2281 AG--UUAC-C AA-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAG UGA-C-G-C- GA-GUC-C(G 2881 -CGA)GGAUU ---------- AA-GCAAAAC CG-AA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GA-GU-GCCC -GAA-G-CCG 3121 G-UAG-U-CU -AA-CUG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-C G-CC-GU-CU A-AGGC-AAG CUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UCCNGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp40_8 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp40-8. str. sp40-8. ACCESSION No information KEYWORDS No information. SOURCE str. sp40-8. str. sp40-8. ORGANISM str. sp40-8. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89047|g1045281 isolate_name= sp40-8 BASE COUNT 364 a 328 c 492 g 262 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 ........AA -)UC-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-- G-CCUUA--A -GGAC-U-GG 421 -GAU-AG-CC G--------- ------GU-- A(-GAAA-)U -AUCG-G--G UAAUACC-GG 481 AU-GUG---- ---------- -------G-U UG-C--G--- C--GAC-(-- --------GG 541 AA-------- -)-GUG---- GG-GU----A AA--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UAAG--- ---)------ ---------| --GCCC--C- G--CCC---- 661 ----UGAG-- AUG---G-|G CCCSC----- -GU|----UU C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A A-GGA--G-G CC(--GA-AA --)GG-UUGU AAA--GUUC| UUUU-UU-CG 1021 --GG-GAA-- GA-AUAA-CC --CAG-GCA( G----GGAA- -----U---) GGCC-UG-GG 1081 ---------- -------G-A U-GA-CGCG- A-ACC-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CU- 1261 U-GC-AAG|U CUG---GCGU G-AAA-GG-C GG-GGG-C(- UC-A)A-CCC -CC-G-GAC- 1321 -UGCG-CUGG A-AAC-UGCG A-GACUA-GA GUC-----UG G-GA-GGGGU AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUACCA-- ---------- ---------- ---------G 1501 CCU--GA-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-AU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GU-GU-UGG -GU-C----- ---------- 1681 -(-GA-GU)- ---------- ---------- ---------- --------GA -CUCAG-UGC 1741 CG--GA---- --GC-(GAA- ---C)G-CG- AUAA-GUGCN C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-C ---AGUG--- -AA----GGG 1981 -UAU-A--(- GAGA-)-UAU -A-UCCG--- GC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CGC-UG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGU-GG-A A-CA-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAAAG CGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUAA ---------- GA-GCGAA-G -GCAA-AAAG -CC-C-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-ACA-(UC -AGC-AU)-G GUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GU-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-C G-CU-GU-CG A-AGGU-ACG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UCCUGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp40_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp40-2. str. sp40-2. ACCESSION No information KEYWORDS No information. SOURCE str. sp40-2. str. sp40-2. ORGANISM str. sp40-2. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89045|g1045279 isolate_name= sp40-2 BASE COUNT 355 a 323 c 485 g 267 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)......C- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- AGA--UCU-A C-CCUU---A -GGCU-G-GG 421 -GAU-AG-CC G--------- ------UU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GG 481 AU-GAG---- ---------- -------G-U UA-U--U--- C--UGC-(-- --------UG 541 UG-------- -)-GCA---- GG-GU----A AA--GAAA-- ---GGUGC-- ---------- 601 --(------- ---UGAG--- ---)------ ---------| --GCAC--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-CCACC-A A|-GCC-UG- GGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GGA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-AU-G-A C-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUAC| UUUU-UC-AG 1021 --CG-GAA-- GA-AUAA-GG --AGG-GGA( G----GGAA- -----U---) GCCC-CU-UU 1081 ---------- -------G-A U-GA-CGUG- A-AGC-U-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U CCG---GCGU G-AAA-GG-C GG-AGG-C(- UC-A)A-CCU -CC-G-GAC- 1321 -UGCG-CUGG A-AAC-UGUA U-AACUG-GA GUC-----UG G-GA-GAGGG GGU-U|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCU--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-UK-GC)- ---------- ---------- ---------- --------GG -CUCAG-UGC 1741 CG--GA---- --GC-(GAA- ---C)G-UG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------C-A ---GAGGG-- -AA----UGA 1981 -UAY-A--(- GAGA-)-UAU -A-UCA---- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| CCU-CU-GUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(----U ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----YUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AC)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-U CUUAU-G-CA -CA--GGUA- 2821 U-ACA-CA-C GUG--CUACA AUGGG-S-GG -UA--CAAAG CGA-C-G-C- GA-ASC-C(G 2881 -CGA)GGGCA ---------- GC-AGCGA-A GGCAA-AAAG -CC-G-UCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GRCUUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GY-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-U-C G-CU-GU-CG A-AGGU-AYG UYU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(UGG-A)AU UCCNGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.mpsp15 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. mpsp15. str. mpsp15. ACCESSION No information KEYWORDS No information. SOURCE str. mpsp15. str. mpsp15. ORGANISM str. mpsp15. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89051|g1045285 isolate_name= mpsp15 BASE COUNT 349 a 360 c 505 g 258 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CACC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-G C-CCUAG--A -GGAU-G-GG 421 -GAU-AG-CC G--------- ------CU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GA 481 AU-AAG---- ---------- -------C-C UG-A--C--- C--GCU-(-- --------UG 541 UG-------- -)-AGU---- GG-CC----A UG--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UAUG--- ---)------ ---------| --GCGC--C- G--CCU---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GU|----CC U--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAA-UG) -C-CCACC-A A|-GCC-UG- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-CC-(GAA A)-GGC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A G-GAA--G-G CC(--GC-AA --)GG-UUGU AAA--AUCC| UUUU-CC-AC 1021 --CC-GGA-- GA-AUAA-GG --CGG-GGA( G----GGAA- -----U---) GCCC-CG-AC 1081 ---------- -------G-A U-GA-CGGU- A-GGG-U-GG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CG- 1261 C-GC-AAG|U CUG---GCGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCG-CCGG A-AAC-UGCG C-NGCUU-GA GUC-----CG G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUGGU- GGA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -C-A-GC(-G AA-G)GCGA- -ACUCCUA-- ---------- ---------- ---------G 1501 CCU--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-CGG --C-C----- ---------- 1681 -(--U-GC)- ---------- ---------- ---------- --------GG -CUUGG-CGC 1741 CG--AA---- --GC-(GAA- ---C)G-CG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CUGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG AAA-UG|--- -------C-A ---GAGG--- -GA----UGA 1981 -UAU-A--(- GAGA-)-UAU -A-UCAG--- CG-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----CG---| CCU-GU-GUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(----U ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-C-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 A-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG CGA-C-G-C- GA-ACC-C(G 2881 -CGA)GGGCG ---------- CA-GCGAA-G CGCAA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GGCUUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GC-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAGGU-C G-CU-GU-CG A-AGGU-AUG UCU-GG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGG-A)AG UCCCGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp5_18 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp5-18. str. sp5-18. ACCESSION No information KEYWORDS No information. SOURCE str. sp5-18. str. sp5-18. ORGANISM str. sp5-18. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89044|g1045283 isolate_name= sp5-18 BASE COUNT 346 a 347 c 516 g 270 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GGGC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCGGG-GG (--CU----- ---------- ---------- 241 --------UG -)CC-SS-GG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-A C-CCUG---A -GGUU-G-GG 421 -GAU-AG-CC G--------- ------UU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GG 481 AU-ACG---- ---------- -------G-U GC-G--G--- G--GGC-(-- --------UG 541 UG-------- -)-GCU---- UC-CG----C AA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GCGC--C- G--CCU---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GCC-CG- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-CC-(GGG A)-GGC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AC-G-A A-GGA--G-G CC(--GA-AA --)GG-UUGU AAA--GUCC| UUUU-UU-UC 1021 --GG-GAA-- GA-AUAA-GG --GGC-GGA( G----GGAA- -----U---) GCCG-CU-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCG-A-GG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-CUG( CCA--GCAGC CGCCGUA-A) C-A-C-GUAA |-GCCG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 U-GC-AAG|U CUG---GCGU G-AAA-GG-C GG-GA--C(- UU-A)A-CUU -CC-G-GAC- 1321 -UGCG-UUAG A-AAC-UGCU G-GGCUA-GA GUC-----CC G-GA-GGGG- AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCG--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGC A--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-AG-GA)- ---------- ---------- ---------- --------GG -CUCAG-UGC 1741 CG--GA---- --GC-(GAA- ---C)G-UG- AUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-U ---AGCC--- -GA----GGG 1981 -CUC-A--(- GAGA-)-UGG -G-UCCG--- GC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- UG-------- ----GC---| GGC-UA-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--KKAC-C AG-CAU---- ---------- ---------- ----(----U ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG CGG-A-G-C- GA-GCC-U(G 2881 -AGA)GGGUA ---------- UA-GCGAA-G CGCAU-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-ACA-(UC -AGC-AU)-G GUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GA-GU-GCCC -GAA-G-CCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-A-C G-CC-GU-CU A-AGGC-AAG CUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp40_7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp40-7. str. sp40-7. ACCESSION No information KEYWORDS No information. SOURCE str. sp40-7. str. sp40-7. ORGANISM str. sp40-7. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89046|g1045280 isolate_name= sp40-7 BASE COUNT 357 a 343 c 501 g 260 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ........GC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UKCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- AGA--UCU-A C-CCUC---C -GGCU-G-GG 421 -GAU-AG-CC G--------- ------CU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------A-U CA-U--U--- U--UGC-(-- --------CA 541 UG-------- -)-GCA---- GA-GU----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCCC--C- G--CCG---- 661 ----GGGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- GCA-G---UU 721 GG-CG-GG-( GU-AAG-GG) -C-CCACC-A A|-ACC-GG- AGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUUC| UUUU-CC-AU 1021 --UC-GAA-- GA-AUAA-GG --CGG-GGA( G----GGAA- -----U---) GCCC-UG-CG 1081 ---------- -------G-A U-GA-CGGU- A-GGA-U-GG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 C-GC-AAG|U CCU---GUGU G-AAA-GG-C GU-GGG-C(- UU-A)A-CCC -AC-G-GAC- 1321 -UGCG-CGGG A-AAC-UGAG U-GACUU-GA GUC-----UG G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCU--AA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-UG-AC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-UG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-C ---AGCG--- -AA----GGG 1981 -CAU-A--(- GAGA-)-UAU -G-CCGG--- CC-------- ---UG----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CA-------- ----GG---| CGC-UG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AA-CAU---- ---------- ---------- ----(----U ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG UGA-C-G-C- GA-GGC-C(G 2881 -CGA)GGCUU ---------- AA-GCGAA-G CACCA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACCUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GU-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-C G-CU-GU-CG A-AGGU-ACG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UCCCGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.mpsp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. mpsp2. str. mpsp2. ACCESSION No information KEYWORDS No information. SOURCE str. mpsp2. str. mpsp2. ORGANISM str. mpsp2. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89050|g1045286 isolate_name= mpsp2 NB: paper states this to likely be a chimera; only bases 1-620 should be used since seq > 620 bp. BASE COUNT 355 a 334 c 506 g 277 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-GA (--GU----- ---------- ---------- 241 --------AA -)UC-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -KC-GUGGG- AGA--UCU-A C-CUUU---A -GGUU-G-GG 421 -GAU-AG-CC G--------- ------UU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GG 481 AU-GUG---- ---------- -------G-U UG-C--G--- G--GGC-(-- --------UG 541 UG-------- -)-GUC---- UU-GC----A AA--GAAA-- ---GGGCC-- ---------- 601 --(------- ----UUU--- ---)------ ---------| --GGCC--CU G--CCU---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-AG-( GU-AAA-GG) -C-CCGCC-A A|-GGC-GA- AGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--GUAC| UUUU-AU-GG 1021 --CU-GAG-- GA-AUAA-GC --GGG-GGA( G----GGAA- -----U---) GCCC-UU-GU 1081 ---------- -------G-A U-GA-CGCG- A-UGC-C-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CCG---GCGU G-AAA-GG-C GG-GGG-C(- UC-A)A-UCU -CU-G-GAC- 1321 -UGCG-CUGG A-AAC-UGGG A-GACUA-GA GUC-----UG G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCU--AA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-UGG -GC-C----- ---------- 1681 -(-UG-AC)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-UG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-C ---AGCG--- -AA----GGG 1981 -CAU-A--(- GAGA-)-UAU -G-CCGG--- CC-------- ---UG----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CA-------- ----GG---| CGC-UG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AA-CAU---- ---------- ---------- ----(----U ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG UGA-C-G-C- GA-GGC-C(G 2881 -CGA)GGCUU ---------- AA-GCGAA-G CACCA-AAAG -CC-G-CCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- AG-GU-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGNGG-G-C G-CU-GU-CG A-AGGU-ACG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp5_9 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sp5-9. str. sp5-9. ACCESSION No information KEYWORDS No information. SOURCE str. sp5-9. str. sp5-9. ORGANISM str. sp5-9. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89042|g1045284 isolate_name= sp5-9 BASE COUNT 337 a 333 c 530 g 274 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... AAGC-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-GA (--GU----- ---------- ---------- 241 --------AA -)UC-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- AGA--NCU-A C-CUUU---A -GGUU-G-GG 421 -GAU-AG-CC G--------- ------UU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GG 481 AU-GUG---- ---------- -------G-U UG-C--G--- G--GGC-(-- --------UG 541 UG-------- -)-GUC---- UU-GC----A AA--GAAA-- ---GGGSC-- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GCCC--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAG-GG) -C-CCACC-A A|-GCC-UG- AGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-AU-G-A A-GGA--G-G CC(--GG-AA --)GG-UUGU AAA--GUAC| UUUU-AU-GG 1021 --CU-GAG-- GA-AUAA-GC --GGG-GGA( G----GGAA- -----U---) GCCC-UU-GU 1081 ---------- -------G-A U-GA-CGCG- A-UGC-C-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CCG---GCGU G-AAA-GG-C GG-GGG-C(- UC-A)A-CCU -CU-G-GAC- 1321 -UGCG-CUGG A-AAC-UGGG A-GACUA-GA GUC-----UG G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCU--GG-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-CGG -GC-C----- ---------- 1681 -(-UU-GC)- ---------- ---------- ---------- --------GG -UUCGG-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-UG- GUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-C ---AGGG--- -GA----GGG 1981 -UAC-G--(- GAGA-)-GGU -A-UCCG--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ----GA---| CUC-UG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---GC ---AAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAG CGA-U-G-C- GA-ACC-C(G 2881 -UGA)GGGGA ---------- GA-GCGAA-G CGCGG-AAAG -CC-G-UCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GGCUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GG-GU-ACCC -GAA-G-CCG 3121 G-CAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-N-C G-CU-GU-CG A-AGGU-AUG UCU-GG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UNCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.mpsp16 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. mpsp16. str. mpsp16. ACCESSION No information KEYWORDS No information. SOURCE str. mpsp16. str. mpsp16. ORGANISM str. mpsp16. REFERENCE 1 AUTHORS Berchtold,M. and Koenig,H. TITLE Phylogenetic analysis and in situ identification of uncultivated spirochetes from the hindgut of the termite Mastotermes darwiniensis JOURNAL Syst. Appl. Microbiol. 19, 66-73 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89052|g1045276 isolate_name= mpsp16 BASE COUNT 333 a 341 c 524 g 275 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-GA (--GU----- ---------- ---------- 241 --------AA -)UC-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- AGA--UCU-A C-CUUU---A -GGUU-G-GG 421 -GAU-AG-CC G--------- ------UU-- A(-GAAA-)U -AGCG-G--G UAAUACC-GG 481 AU-GUG---- ---------- -------G-U UG-C--G--- G--GGC-(-- --------UG 541 UG-------- -)-GUC---- UU-GC----A AA--GAAA-- ---GCGGC-- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GCCC--U- G--CCU---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- GUA-G---UU 721 GG-CG-GG-( GU-AAG-GG) -C-CCACC-A A|-GCC-UG- AGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -CGC)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-AU-G-A A-GGA--G-G CC(--GG-AA --)GG-UUGU AAA--GUAC| UUUU-AU-GG 1021 --CU-GAG-- GA-AUAA-GC --GGG-GGA( G----GGAA- -----U---) GCCC-UU-GU 1081 ---------- -------G-A U-GA-CGCG- A-UGC-C-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CCG---GCGU G-AAA-GG-C GG-GGG-C(- UC-A)A-CCU -CU-G-GAC- 1321 -UGCG-CUGG A-AAC-UGGG A-GACUA-GA GUC-----UG G-GA-GGGGG AGU-U|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -ACUUCCA-- ---------- ---------- ---------G 1501 CCU--GG-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GC-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CU-AU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-CGG --CC------ ---------- 1681 -(-UU-GC)- ---------- ---------- ---------- --------CG -UUCGG-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-UG- GUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CKGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-C ---AGGG--- -GA----GGG 1981 -UAC-G--(- GAGA-)-GGU -A-UCCG--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ----GA---| CUC-UG-UCA |---C|A--G 2161 GU-GC-GUCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--GCC- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---CA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA ACGGG-C-GG -UA--CAGAG CGA-U-G-C- GA-ACC-C(G 2881 -UGA)GGGGA ---------- GA-GCGAA-G CGCGG-AAAG -CC-G-UCC- GUAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GGCUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G CCC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GG-GU-ACCC -GAA-G-CCG 3121 G-CAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-N-C G-CU-GU-CG A-AGGU-ACG UUU-AG-UG- AGG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGG-A)AG UCCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.3 SPI.AURANTIA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.3 SPI.AURANTIA_ASSEMBLAGE. ORGANISM 2.13.3.3 SPI.AURANTIA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.spNL1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta sp. str. NL1. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta sp. str. NL1. ORGANISM Spirochaeta sp. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Cooke,S.M., Fussing,V., Poulsen,L .K. and Breznak,J.A. TITLE Phylogeny of not-yet-cultured spirochetes from termite guts JOURNAL Appl. Environ. Microbiol. 62, 347-352 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40791|g1127784 geog_source= Mayombe, Republic of Congo biol_source= tropical rain forest nat_host= Nasutitermes lujae (termite) isolate_name= NL1 BASE COUNT 342 a 378 c 522 g 232 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGU-CU--U AAGC-AUGCA A-GUC-GGGC 121 G--------- -----GCAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CUAG---- ---|------ AGCG-GCGG- 361 -A-CU-GG-U GAGU---AAC -GC-GUGGG- CGA--CCU-G C-CCCG---G -GGAU-G-GG 421 -GAC-AG-CC G--------- ------CU-- G(-GAAA-)C -AGCG-G--G UAAUACC-GA 481 AU-ACG---- ---------- -------C-C UG-U--A--- U--AGC-(-- --------CG 541 AG-------- -)-GCU---- AU-AU----G AG--GAAA-- ---GGGGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCUC--C- G--CCC---- 661 ----CGGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAA-GG) -C-CCGCC-A A|-GGC-GA- AGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUAUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A C-GAA--G-G CC(--GA-AA --)GG-UUGU AAA--AUUC| UUUU-GC-GG 1021 --GC-GAA-- GA-AGAA-GG --CUU-GGA( G----GGAA- -----U---) GCCA-GG-CC 1081 ---------- -------G-G U-GA-CGCC- G-GCC-C-GC G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 A-GU-AAG|U CUG---AUGU G-AAA-AC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCA-UUGG A-AAC-UGCU G-GGCUU-GA GUC-----AC G-GA-GGGGA AGC-C|GGAA 1381 UU-CCUGGU- GUA-GGG(-G UGAAA)-UCU -GU-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GCUUCCA-- ---------- ---------- ---------G 1501 CCG--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CU-GU--A 1621 AAC-G-AUGC G--CA-CU-- -------A|G -GC-GU-CGG -GG-C----- ---------- 1681 -(-GA-GC)- ---------- ---------- ---------- --------GU -UCCGG-UGC 1741 CG--AA---- --GC-(GAA- ---C)G-CG- GUAA-GUGCG C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGGUA-C G)--CGAGGA 1921 A-CCUUG-CC UGG-GU-UUG ACA-UG|--- -------G-G ---GGCG--- -GA----UGC 1981 -GGC-A--(- GAGA-)-UGU -C-GCAG--- CG-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----CG---| CGC-CC-CUG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUAC-C AG-CAG---- ---------- ---------- ---G(---CA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-GGC-GG-A A-CU-G-CCG --GC(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -CA--CAAAG CGA-A-G-C- GA-GUC-C(G 2881 -AGA)GGGA- ---------- UA-GCGAA-C CGCCG-AAAG -CC-G-GCC- GUAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCG A--GU-UGG- GG-GC-ACCC -GAA-G-CCG 3121 G-CAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-GU-CG A-AGGU-GCG CCG-GG-CG- AGG-AGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta aurantia str. J1 ATCC 25082. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta aurantia str. J1 ATCC 25082. ORGANISM Spirochaeta aurantia. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25082 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57740 isolate_name= J1 BASE COUNT 389 a 325 c 483 g 323 t 2856 others ORIGIN 1 ~~~~~~~~~N CCUUGGAGCA AUCCAAGGUA UAUAUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -CGU-UU--U AAGN-AUGCA A-GUC-GAAU 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUGG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CCAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--UCU-G C-CUGA---C -GGAU-G-GG 421 -GAU-AG-CU U--------- ------GU-- G(-GAAA-)C -ACAG-G--G UAAUACC-GA 481 AU-GAG---- ---------- -------C-U GA-C--G--- A--GAC-(-- --------UU 541 UG-------- -)-GUU---- UU-GU----U AG--UAAA-- ---GGUGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCAC--C- G--CCG---- 661 ----ACAG-- AGG---A-|G CCUGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G UC(--GA-GA --)GA-UUGU AAA--GAUC| UUUU-CU-AC 1021 --AU-GAG-- GA-AUAA-GU --CUG-GGA( G----GGAA- -----U---) GCCU-GG-AU 1081 ---------- -------G-A U-GA-CGUU- A-GUG-U-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-GC-AAG|U CUG---AUGU G-AAA-UC-U CC-GGG-C(- UU-A)A-CUC -GG-A-AUC- 1321 -CGCG-UUGG A-AAC-UGCA U-GACUA-GA GUA-----UU A-GA-GGGGG AGU-C|GGAA 1381 UU-CCUAGU- GUA-GGG(-G UGAAA)-UCU -GU-UGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -ACUCCUG-- ---------- ---------- ---------G 1501 CUG--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------U|G -GU-GU-UGG -GC-C----- ---------- 1681 -(GAU-UA)- ---------- ---------- ---------- --------GG -UUCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUGCA C|C|G-CCU- G-GGGAGUAU 1801 GCC-C---(G CAA)---G-G GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GN-NGU -UUAAUU-CG -(AUGAUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|--- -------C-A ---CAGG--- -AA----UAG 1981 -UUU-A--(- GAGA-)-UAG -G-CUAG--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GG-------- -----G---| UCU-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCC- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- AA-GCUAA-U CUCAA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-ACA-(UC -AGC-AU)-G GUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-AU-ACCC -GAA-G-CCG 3121 C-UAG-A-CU -AA-CCU--- ---------- ---------- -----(---- -GNNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-U-C G-AC-GG-CU A-AGGA-AUG CCU....... .......... 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crs.spCP1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cristispira sp. str. CP1. ACCESSION No information KEYWORDS No information. SOURCE Cristispira sp. str. CP1. ORGANISM Cristispira sp. REFERENCE 1 AUTHORS Paster,B.J., Pelletier,D.A., Dewhirst,F.E., Weisburg,W.G., Fussing,V., Poulsen,L.K., Dannenberg,S. and Schroeder,I. TITLE Phylogenetic position of the spirochetal genus Cristispira JOURNAL Appl. Environ. Microbiol. 62, 942-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42638 isolate_name= CP1 BASE COUNT 440 a 276 c 405 g 370 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AAC -GAAC-AC-- UAGC-GAU-G -CGU-CU--U AGAU-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UA (--UU----- ---------- ---------- 241 --------UA -)UA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- UAA--UCU-A C-CAUG---A -AG-U-G-GG 421 -GAU-AG-CU U--------- ------AG-- G(--AAA-)C -CUAA-G--G UAAUACC-GC 481 AU-AUC---- ---------- -------U-U UA-U--A--- ---GAU-(-- --------GU 541 UG-------- -)-AUC---- -U-AU----A AA--GAAAG- ---GAA-CU- ----CG---- 601 --(------- --AAUUA--- ---)------ -----UG--| -GGUUU--C- G--CUU---- 661 ----UAUG-- AUG---A-|G CUUGC----- -AC|----CU G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-CAC -(UACG)--G UGG-GC-AG- C-A---GU-C 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CAUC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UG(--GA-AA --)CA-UCGU AAA--ACCC| UUUU-AU-AG 1021 --AU-GAA-- GA-AUAA-GC --UUU-A-A( G----GAAA- -----U---) G-UA-AA-GU 1081 ---------- -------G-A U-GA-CAUU- A-GUC-U-AU G-AC--UAAG ---------U 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG---- 1201 AAG-UGUUGU UC-GGAAUUA -UU-GGGU|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---AUAU U-AAA-GA-C UC-AAG-C(- UC-A)A-CUU -GA-G-GAA- 1321 -UGUG-UUAG A-AAC-UAUC A-AACUA-GA GUU-----UA G-AA-GAGGA AAA-U|AGAA 1381 UU-UCUAGU- GUA-GUG(-G UGAUA)-UCU -UC-AGAU-A UU-AGGAGG- AAUG-CCAG- 1441 -A-G-GU(-G AA-G)GCGA- -UUUUCUA-- ---------- ---------- ---------G 1501 UCU--AA-AA CUGACG-CUG AU-A------ -------UG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CU- -GA(AUUA-G AUAC)-UCA- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -AU-CU-UGG -AU-UU---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------GGA -UUUGG-GAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUA C|C|A-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGAA 1921 A-UCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---GUAG--- -AA----AAG 1981 -UGU-A--(- GAGA-)-UAC -A-CUCC--- UA-------- ---G------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- -C-------- ----UA---| CUG-CU-AUA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUC- 2281 UG--UUAC-U AA-CAU---- ---------- ---------- ----(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCU --CU(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UA -UA--CGAC- CGA-A-G-C- GA-AAC-C(G 2881 -AGA)GGUC- ---------- AA-GCGAA-U CGUAC-AAAG -UA-U-ACC- GAAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UCA-(UC -ACC-AU)-G GAG-CGGUG- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- UU-UU-UCCC -GAA-G-UUA 3121 U-UAG-U-CU -AA-CAG--- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CUGAGG-A-C A-AU-AC-CC A-AGGA-AGA AUU-GG-UA- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAA G(CUU-G)GA UCCC...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.3.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.3.4 BORRELIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.3.4 BORRELIA_GROUP. ORGANISM 2.13.3.4 BORRELIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.anseri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia anserina str. Es. ACCESSION No information KEYWORDS No information. SOURCE Borrelia anserina str. Es. ORGANISM Borrelia anserina. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochaetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M72397 isolate_name= Es BASE COUNT 425 a 273 c 422 g 339 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~N AAAAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- ACG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GAUA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UN-G-AGC- 1321 -UAUG-CUAG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-GGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- AU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-NAAACNC -AAA-GGAAU UG-GANGG-G -G-C-CN--G 1861 C-N--CN-NN NNGUGG-AGN N-U-GU-GGU -UU....... .(....UA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-AU-AU-CU A-AGGU-AUG UUU-GN-NG- NGG-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.anser2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia anserina.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia anserina. ORGANISM Borrelia anserina. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE Phylogenetic analysis of the genus Borrelia: A comparison of North American and European isolates of B. burgdorferi JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64312|g173942 biol_source= Rocky Mountain Laboratories bacterial pathogen collection BASE COUNT 422 a 271 c 417 g 336 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 --AU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---CGU--C- G--CUU---- 661 ----GUAG-- ACG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UN-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G -AG-GC-AG- C-A---GC-C 901 UAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GAUA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGN-N-- 1201 NAG-CGUUGU UC-GGGAUUA -NU-GGGC|G UAAA--GGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-CUAG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-GGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- AU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A....... .)..CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACN-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCNCCC- GUC-ACA--- --NNA-CCCG A--GU-UGA- GG-AU-NCCC -GAA-G-CUA 3121 U-UNN-N-CN -AA....... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-GG-UG- AG........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.spFCB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia sp. str. FCB-1. ACCESSION No information KEYWORDS No information. SOURCE Borrelia sp. str. FCB-1. ORGANISM Borrelia sp. REFERENCE 1 AUTHORS Breitschwerdt,E.B. TITLE Borrelia JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37837|g598080 isolate_name= FCB-1 BASE COUNT 424 a 274 c 428 g 342 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -N-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GCC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.theilr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia theileri.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia theileri. ORGANISM Borrelia theileri. REFERENCE 1 AUTHORS Armstrong,P.M., Rich,S.M., Smith,R.D., Hartl,D.L., Spielman ,A. and Telford,S.R.,III. TITLE A new Borrelia infecting Lone Star ticks [letter] JOURNAL Lancet 347 (8993), 67-68 (1996) STANDARD No information REFERENCE 2 AUTHORS Rich,S.M. and Armstrong,P.M. TITLE Relationships of hard and soft tick Borrelias JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U38375|g1145298 BASE COUNT 101 a 63 c 110 g 81 t 4021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ..G---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACU-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-GUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.coria2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia coriaceae str. Co53 ATCC 43381 (T). ACCESSION No information KEYWORDS No information. SOURCE Borrelia coriaceae str. Co53 ATCC 43381 (T). ORGANISM Borrelia coriaceae. REFERENCE 1 AUTHORS Ras,N.M., Lascola,B., Postic,D., Cutler,S.J., Rodhain,F., Baranton,G. and Raoult,D. TITLE Phylogenesis of relapsing fever Borrelia spp JOURNAL Int. J. Syst. Bacteriol. 46 (4), 859-865 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42286|g1814201 isolate_name= Co53 geog_source= California biol_source= Ornithodoros coriaceus NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 437 a 288 c 441 g 353 t 2857 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UCA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-GUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UG-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-A)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGAA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-C-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-UUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AC-CU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGUGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.barbor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia barbouri.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia barbouri. ORGANISM Borrelia barbouri. REFERENCE 1 AUTHORS Armstrong,P.M., Rich,S.M., Smith,R.D., Hartl,D.L., Spielman ,A. and Telford,S.R.,III. TITLE A new Borrelia infecting Lone Star ticks [letter] JOURNAL Lancet 347 (8993), 67-68 (1996) STANDARD No information REFERENCE 2 AUTHORS Rich,S.M. and Armstrong,P.M. TITLE Relationships of hard and soft tick Borrelias JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U38374|g1145297 BASE COUNT 102 a 63 c 110 g 80 t 4021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ..G---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.coriac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia coriaceae str. Co53 ATCC 43381 (T). ACCESSION No information KEYWORDS No information. SOURCE Borrelia coriaceae str. Co53 ATCC 43381 (T). ORGANISM Borrelia coriaceae. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE Phylogenetic analysis of the genus Borrelia: A comparison of North American and European isolates of B. burgdorferi JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60970|g173934 isolate_name= Co53 geog_source= California biol_source= Ornithodoros coriaceus BASE COUNT 427 a 276 c 410 g 340 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAC---G -AGAU---GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UCA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAACA ---)------ ---------| ----NU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCN -(UAC-)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAN A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAN-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -AU-GGGC|G UAAA--GGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UG-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-A)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A....... .)..CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-N---NG-U |GC-U(-GUG A)-GGUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-C-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UNA- GG-AN-UCCC -GAA-G-UUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AC-CU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii str. HS1T ATCC 35209. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii str. HS1T ATCC 35209. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE Phylogenetic analysis of the genus Borrelia: A comparison of North American and European isolates of B. burgdorferi JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35209 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60968|g173932 geog_source= California biol_source= Ornithodoros hermsii isolate_name= HS1T NB: duplicate of Bor.hermi5? BASE COUNT 436 a 279 c 427 g 351 t 2883 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUUU---G -AGAU---GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAACA ---)------ ---------| ----NU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCN -(UAC-)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAN A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 AAG-CGUUGU UC-GGGAUUA -AU-GGGC|G UAAA--GGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-GAA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A....... .)..CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-N---NG-U |GC-U(-GUG A)-GGUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- NNNN-CAAGG UAGCC-GUAC U(UAU-G)U. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii str. HS1T ATCC 35209. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii str. HS1T ATCC 35209. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Ras,N.M., Lascola,B., Postic,D., Cutler,S.J., Rodhain,F., Baranton,G. and Raoult,D. TITLE Phylogenesis of relapsing fever Borrelia spp JOURNAL Int. J. Syst. Bacteriol. 46 (4), 859-865 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35209 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42292|g1814212 geog_source= California biol_source= Ornithodoros hermsii isolate_name= HS1T NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 440 a 286 c 440 g 357 t 2853 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGUC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGCC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-GAA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGUGGC--UG GAUCACCUC~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermsi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii str. M1001. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii str. M1001. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochaetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10136 (bases 1 to 525) isolate_name= M1001 BASE COUNT 368 a 247 c 359 g 308 t 3094 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NN NNAAUNACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UNAC-GC-- UGGC-NGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-U.... .......... 361 .......... .......... .........- .......... .......... ....G-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-NAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---CUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCNAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CNCU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU NAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- N-AUU-U-AU G-AA--UNAG ---------C 1141 -CCCGGCU-N AUUNC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .........C -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-N)A-CUG -UG-G-NAA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUN-GA GUC-----UG A-UN-NNGGA AGU-U|NGAA 1381 UU-CCUGGU- GUN-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGNAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CC- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CN-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(GAA-AG)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUNA-GUGUG C|N|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CNA)---G-A GU-GAAACUC -NAA-GGAAU .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---NN---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCNNCC- GUC-NNA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UN- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Marconi,R.T. and Schwan,T. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85074 BASE COUNT 431 a 275 c 414 g 344 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAA-GAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNNU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GU-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-NNA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -AU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-NUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-AUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Marconi,R.T. and Schwan,T. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85070 BASE COUNT 431 a 275 c 414 g 344 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAA-GAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNNU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GU-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-NNA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -AU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-NUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-AUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hermi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hermsii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hermsii. ORGANISM Borrelia hermsii. REFERENCE 1 AUTHORS Marconi,R.T. and Schwan,T. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85075 NB: updates M85070 and M85074? BASE COUNT 428 a 277 c 420 g 344 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------GA 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UG- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-GAA- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-C-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UN- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia sp.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia sp. ORGANISM Borrelia sp. REFERENCE 1 AUTHORS Anda,P., Sanchez-Yebra,W., del Mar Vitutia,M., Pastrana,E.P., Rodriguez,I., Miller,N.S., Backenson,P.B. and Benach,J.L. TITLE A new Borrelia species isolated from patients with relapsing fever in Spain JOURNAL Lancet 348, 162-165 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28502|g903614 BASE COUNT 418 a 284 c 418 g 337 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..CAC-GC-- UGGA-CGU-A -CGU-CU--G AAAC-CUGCU A-GUC-AAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UGA-(-- --------GC 541 UG-------- -)-UCA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAA ---------C 1141 -CCCGGCA-A AUUAC-GUG( CCA--UCACC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-CUAG --AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CCC---- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |CC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-U-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-NC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG NUU-NG-GG- GGG-GGGG-N 3301 G---NNGUC- CNA--CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.dutton 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia duttoni.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia duttoni. ORGANISM Borrelia duttoni. REFERENCE 1 AUTHORS Anda,P., Sanchez-Yebra,W., del Mar Vitutia,M., Pastrana,E.P., Rodriguez,I., Miller,N.S., Backenson,P.B. and Benach,J.L. TITLE A new Borrelia species isolated from patients with relapsing fever in Spain JOURNAL Lancet 348, 162-165 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28503|g903613 BASE COUNT 424 a 285 c 421 g 337 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGU-G -CGU-CU--U AAGC-AUGCU A-GUC-CAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UGA-(-- --------GA 541 UG-------- -)-UCA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-NC-GU 961 G-A-CC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUU( CCA--ACACC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUG--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-CUAG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AA CGGUGG-AGC A-U-GU-GGU -UUAAAU-CG -(AUGAAA-C G)--CGGGGG 1921 A-CCUUA-CC AGG-GC-UUG ACA-AA|--- -------A-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AAA |---C|A--G 2161 GU-CC-UNCA UG|G-UUU-- UCG-UCA|-G C-U---CG-U |UC-U(-GUG A)-GGUGU-U 2221 GG-G-(GUAA -GU)-CCCCC CA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGU- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.crocid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia crocidurae str. ORI. ACCESSION No information KEYWORDS No information. SOURCE Borrelia crocidurae str. ORI. ORGANISM Borrelia crocidurae. REFERENCE 1 AUTHORS Anda,P., Sanchez-Yebra,W., del Mar Vitutia,M., Pastrana,E.P., Rodriguez,I., Miller,N.S., Backenson,P.B. and Benach,J.L. TITLE A new Borrelia species isolated from patients with relapsing fever in Spain JOURNAL Lancet 348, 162-165 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28418|g886134 isolate_name= ORI BASE COUNT 409 a 281 c 419 g 341 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GA-- UGGC-UGU-A -NNU-NU--U ACUC-AUGCC A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GGGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AC-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUCCC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UGA-(-- --------GA 541 UG-------- -)-UCA---- -A-UU----G AU--GNNAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---GU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AN-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-C 841 (CUGA-GA-U ACG)--GNCC -AGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GC-U 901 GAG-AAUCUU C-CCCAAU-- GG-GC-(GAA A)-GCC-UGA CNGA|-NCGA CNCU-GC-GU 961 G-A-AC-G-A A-GAA--G-G NC(--GN-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUN( U----GAAA- -----U---) GUCA-AG-GU 1081 ---------- -------G-A U-UA-CGUG- A-ACU-U-AU G-AA--AUAN ---------U 1141 -CGCGGCU-C AUUAU-NUU( CCA--ACAUC GGGGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAC-CGUUGU UC-GGGUUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUG--UGCGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-CUAG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G CC----UAC- C-CU-GU--A 1621 AAC-G-AUNC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(C CAA)---G-A GUAGAAACUC -CAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----GUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-UCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCCCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-CU A-AGGU-AUG UUU-AG-GG- AGG-GGGG-U 3301 G---AAGUC- GAAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.hispan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia hispanica str. JH. ACCESSION No information KEYWORDS No information. SOURCE Borrelia hispanica str. JH. ORGANISM Borrelia hispanica. REFERENCE 1 AUTHORS Anda,P., Sanchez-Yebra,W., del Mar Vitutia,M., Pastrana,E.P., Rodriguez,I., Miller,N.S., Backenson,P.B. and Benach,J.L. TITLE A new Borrelia species isolated from patients with relapsing fever in Spain JOURNAL Lancet 348, 162-165 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44404 isolate_name= JH NB: GB seq reverse complemented alignment difficult to do at 1-45n, 353n-3'end BASE COUNT 104 a 83 c 99 g 77 t 4013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .........G GUU------G 1141 -NUGNUUN-A UUAUN-GUU( NCA--GCANC NGCGNAA-A) A-A-CAUAGG |-GGGN-C-- 1201 GAN-CAUUGU UN-GGGAAUU -AUUGGNC|G AAAA-AGGGU GAG-UAG-AC -G|-GA-UA- 1261 U-UC-AAG|U CUA--UGCGU AAANA-UA-C CA-CAN-C(- UC-C)G-CUG -UG-G-AGC- 1321 -UAUG-CGAG A-AUC-UNCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGN-N|AGAA 1381 UN-CCNGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-GGGAAG- AAUA-CCAG- 1441 -N-G-NN(-G AA-G)GCGA- -ACUUCUN-- ---------- ---------- ---------G 1501 NUC--AA-GA CUGACA-CUG AG-U------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 CC-NCN-NA- -GG(ANUA-N AUAN)-CCU- ----GGCA-N NC----CUC- G-CU-GU-NN 1621 NUC-N-AUUC A--CA-CC-- -------N|G -CU-GA-NNU -NC------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------G -NUNAN-NCC 1741 CN--NA---- --NC-(NAA- ---C)U-UN- NCCA-CUNNC C|C|C-NCC- N-CCGNUCAU 1801 CCC-C---(C CAA)---G-A NNAGAAGGCC -AA....... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.spHT31 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia sp. str. HT31 JCM 9579. ACCESSION No information KEYWORDS No information. SOURCE Borrelia sp. str. HT31 JCM 9579. ORGANISM Borrelia sp. REFERENCE 1 AUTHORS Fukunaga,M., Takahashi,Y., Tsuruta,Y., Matsushita,O., Ralph ,D., McClelland,M. and Nakao,M. TITLE Genetic and phenotypic analysis of Borrelia miyamotoi sp. nov., isolated from the ixodid tick Ixodes persulcatus, the vector for Lyme disease in Japan JOURNAL Int. J. Syst. Bacteriol. 45, 804-810 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9579 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45192|g633032 isolate_name= HT31 BASE COUNT 395 a 259 c 397 g 317 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------GA 541 UG-------- -)-UUA---- -G-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( AU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --GU-GAG-- GA-GUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUCA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GC-AAG|U CUA--UGUGU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-CUGG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -C-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAG-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GGCUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AC.... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.lonstr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia lonestari str. Texas 20. ACCESSION No information KEYWORDS No information. SOURCE Borrelia lonestari str. Texas 20. ORGANISM Borrelia lonestari. REFERENCE 1 AUTHORS Piesman,J.F. Barbour,A.G., Maupin,G.O., Teltow,G.J., Carter,C.J. and TITLE hard tick Amblyomma americanum: Possible agent of a Lyme disease-like illness Identification of an uncultivable Borrelia species in the JOURNAL J. Infect. Dis. 173, 403-409 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23211|g758785 nat_host= Amblyomma americanum isolate_name= Texas 20 BASE COUNT 391 a 243 c 387 g 315 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AAUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UGA-(-- --------GU 541 UG-------- -)-UUA---- -G-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--GUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUCA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGUGU A-AAA-UA-C CA-CGG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-CUAG A-AAC-UGCA U-GACUA-GA GUC-----UG A-UA-GGGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCAG- 1441 -A-G-GC(-G AA-A)GCGA- -ACCUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -UC------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---CAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -C-UACU--- CU-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-GU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -UA--CAAAG CGA-U-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCAGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK4. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK4. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85194|g793778 isolate_name= DK4 BASE COUNT 437 a 271 c 424 g 356 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAGGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A C|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK5. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK5. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85197|g793779 isolate_name= DK5 BASE COUNT 438 a 270 c 422 g 356 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A C|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 N-ACA-NA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 934U. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 934U. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Kee,S.-H., Park,Y.-H. and Chang,W.-H. TITLE Genetic Analysis of Borrelia burgdorferi in Korea JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36160|g537496 isolate_name= 934U BASE COUNT 440 a 273 c 429 g 361 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGCAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Marconi,R.T., Liveris,D. and Schwartz,I. TITLE Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp. nov. and genomic group 21038 (Borrelia andersonii sp. nov.) isolates JOURNAL J. Clin. Microbiol. 33 (9), 2427-2434 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L46697|g945209 Ref 1: nothing in paper to distinguish Bor.andrsn/2 BASE COUNT 374 a 224 c 359 g 301 t 3118 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---CUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 G-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C A)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G--C-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- U......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK3. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK3. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85192|g793777 isolate_name= DK3 BASE COUNT 439 a 270 c 423 g 355 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--NC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK21. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK21. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85191|g793774 isolate_name= DK21 BASE COUNT 438 a 270 c 423 g 356 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-N)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzeli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK2. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK2. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85188|g793773 isolate_name= DK2 BASE COUNT 438 a 270 c 423 g 356 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-N)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.afzel2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia afzelii str. DK1. ACCESSION No information KEYWORDS No information. SOURCE Borrelia afzelii str. DK1. ORGANISM Borrelia afzelii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85190|g793772 isolate_name= DK1 BASE COUNT 438 a 270 c 423 g 357 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CG-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Kee,S., Chang,W., Park,Y. and Cho,M. TITLE genetic heterogeneity of Borrelia burgdorferi in Korea JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44939|g1177874 BASE COUNT 441 a 272 c 428 g 361 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUA-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU U(GGA-A)AG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burIP3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. R-IP3. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. R-IP3. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T., Garon,C.F., Lubke,L. and Hauglum,W. TITLE burgdorferi through signature nucleotide analysis and 16S rRNA sequence determination Identification of a third genomic group of Borrelia JOURNAL J. Gen. Microbiol. 138, 533-536 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84815 isolate_name= R-IP3 BASE COUNT 434 a 267 c 409 g 356 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAN- ---)------ ---------| ---NNU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GC 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAC-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-NCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 9MT. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 9MT. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Kee,S., Park,Y.-H. and Park,K.-S. TITLE Genetic analysis of Borrelia burgdorferi in Korea JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39080|g755002 isolate_name= 9MT BASE COUNT 437 a 271 c 431 g 363 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GGCA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Kee,S., Chang,W., Park,Y. and Cho,M. TITLE Genetic heterogeity of Borrelia burgdorferi in Korea JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44938|g1177873 BASE COUNT 436 a 271 c 432 g 363 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GGCA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-CCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.andrsn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia andersonii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia andersonii. ORGANISM Borrelia andersonii. REFERENCE 1 AUTHORS Marconi,R.T., Liveris,D. and Schwartz,I. TITLE Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp. nov. and genomic group 21038 (Borrelia andersonii sp. nov.) isolates JOURNAL J. Clin. Microbiol. 33 (9), 2427-2434 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L46688|g945205 Ref 1: nothing in paper to distinguish Bor.andrsn/2 BASE COUNT 375 a 224 c 368 g 310 t 3099 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUGU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-GU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---NUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UUUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-N-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UGUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- U......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.19941 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia sp. str. 19941. ACCESSION No information KEYWORDS No information. SOURCE Borrelia sp. str. 19941. ORGANISM Borrelia sp. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M72396 biol_source= Ixodes dentatus nymph (rabbit tick) isolate_name= 19941 BASE COUNT 411 a 245 c 379 g 341 t 3000 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NN NNNNUAANGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UNAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NCNN--N- G--CUU---- 661 ----GUAG-- AUG---A-|G UUUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACN-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -NNN-C-UCG -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-NGA UGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA....... ....GUA-A) U-A-C-GUAA |......... 1201 ..G-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-N-AGC- 1321 -UAUG-UUGG A-AAC-UCUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|N|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-G...... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CNUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GNC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CAC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.andrs2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia andersonii.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia andersonii. ORGANISM Borrelia andersonii. REFERENCE 1 AUTHORS Marconi,R.T., Liveris,D. and Schwartz,I. TITLE Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp. nov. and genomic group 21038 (Borrelia andersonii sp. nov.) isolates JOURNAL J. Clin. Microbiol. 33 (9), 2427-2434 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L46701|g945206 Ref 1: nothing in paper to distinguish Bor.andrsn/2 BASE COUNT 401 a 242 c 390 g 336 t 3007 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---CUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UUUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- CC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UGUG U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UACC--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CU----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-G- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 935T. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 935T. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Kee,S., Park,Y.-H. and Park,K.-S. TITLE Genetic analysis of Borrelia burgdorferi in Korea JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39081|g755003 isolate_name= 935T BASE COUNT 442 a 273 c 428 g 362 t 2871 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---CAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACG-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCAGC--UG .......... 3361 ...S|URANU .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.garin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia garinii str. PBi. ACCESSION No information KEYWORDS No information. SOURCE Borrelia garinii str. PBi. ORGANISM Borrelia garinii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85199|g793785 isolate_name= PBi BASE COUNT 439 a 268 c 422 g 358 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUG---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACG-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUAG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 N-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.garini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia garinii str. DK27. ACCESSION No information KEYWORDS No information. SOURCE Borrelia garinii str. DK27. ORGANISM Borrelia garinii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85193|g793775 isolate_name= DK27 BASE COUNT 439 a 269 c 423 g 357 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GGG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.garin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia garinii str. DK29. ACCESSION No information KEYWORDS No information. SOURCE Borrelia garinii str. DK29. ORGANISM Borrelia garinii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85202|g793776 isolate_name= DK29 BASE COUNT 440 a 269 c 422 g 357 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.garin4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia garinii str. SL20. ACCESSION No information KEYWORDS No information. SOURCE Borrelia garinii str. SL20. ORGANISM Borrelia garinii. REFERENCE 1 AUTHORS Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A .-M. and Hansen,K. TITLE Evolution of the Borrelia burgdorferi outer surface protein OspC JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85198|g793786 isolate_name= SL20 BASE COUNT 441 a 267 c 421 g 359 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGG CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-AC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-UCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgG2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. G2. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. G2. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60967|g173931 geog_source= Germany biol_source= cerebrospinal fluid isolates from Lyme patients isolate_name= G2 BASE COUNT 436 a 267 c 414 g 357 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNNU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UNNA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-UCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AA-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- ACG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgG1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. G1. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. G1. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64311|g173944 geog_source= Germany biol_source= cerebrospinal fluid isolates from Lyme patients isolate_name= G1 BASE COUNT 437 a 268 c 412 g 359 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---NUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -NU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-UCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --NNA-CCCG A--GU-UGA- GG-AU-NCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UC- ACG-GUGG-C 3301 C......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg90 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. R-IP90. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. R-IP90. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE diagnosis of Lyme disease and for species- specific identification of Lyme disease isolates by 16S rRNA signature nucleotide analysis Development of polymerase chain reaction primer sets for JOURNAL J. Clin. Microbiol. 30, 2830-2834 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M89937|g173929 isolate_name= R-IP90 BASE COUNT 346 a 204 c 325 g 284 t 3217 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNNU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG........ .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... ..U-GU-GGU -UUAAUU-CG -(ANNNUN-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- U......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.garin5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. Rioja (garinii). ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. Rioja (garinii). ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Backenson,P.B., Anda,P. and Benach,J.L. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28500|g903611 isolate_name= Rioja (garinii) NB: poor sequence 1 - ~480n BASE COUNT 365 a 262 c 426 g 320 t 3003 others ORIGIN 1 ---------- ---------- ---------- --AGAAUGNA GUGUGU(U-G G)N-GGG|-U 61 NNNNAU-GGA -GGGG-GG-- UGGN-GAA-G -GGU-UN--G ANNN-CCUNC C-NGG-GNGG 121 A--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAN-NA (--AA----- ---------- ---------- 241 --------AN -)AA-UAN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GN--- GNNG-GGGG- 361 -G-GG-GU-N GAUG---GGG -GG-GUUGA- UUA--CCU-N C-AACN---N -GGGG-G-GG 421 -GNG-GG-GA G--------- ------CA-- A(-UAAG-)A -GGUAAUNNC GNAGGAA-GU 481 CNAANAA--- ---------- ---------- CU-U--N--- ---UNA-(-- --------UU 541 UG-------- -)-NUG---- --------UG UG-------- ---GGAGC-- ---------- 601 --(------- -CGGNAUANC ---)------ ---------| ---CUN--C- N--CGU---- 661 ----GGAG-- AUG---A-|N GCNUC----- -GC|----CC U--CCUA-C- CUA-G---UU 721 NN-UA-GG-( NG-GUN-UG) -N-NNACC-A N|-NCC-GN- UNA------- -----NA-NA 781 U-AA-C-CA| -U-CCU--(G -NGN)-GGNU ----GG-N-- GGG-U|G-GN -NCUNG-A-C 841 (CUGA-GA-N AUG)--ANAC -AGN-C-ACC -(CCCN)--G NNG-GC-GG- C-A---GC-N 901 AAG-AANCUA C-CGCCNN-- CN-NC-(GUG A)-NUC-UGG NGGA|-NCGN CNCN-CN-CU 961 G-C-UU-G-N N-GNA--G-G UC(--GA-NA --)GA-NUNU AAU--NUNN| CUUU-AU-NA 1021 --UU-GCG-- GA-AUGA-UN --ACU-GUU( A----GGNG- -----U---) UGAC-UA-AN 1081 ---------- -------C-N C-CN-NCNU- N-AUN-N-AC G-UU--NCAU ---------C 1141 -ACCNGCU-U UUUAC-NUU( CCA--ACAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- U--A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU--CUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G NUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|--CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GANNCUC -NAAGGAANU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-ANA |---C|A--G 2161 GUGCC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GAG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGN-N UN-ACG--NC -N-AGCC-GN GCN-A-GC-C CNUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CUAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGAG- AAUAC-GUU- CUC-GGG-NC UUGUA----C 3061 ACACCGCCC- CUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-NCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-NU-UU A-AGGU-NUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GAAA-AAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. DN127. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. DN127. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS McClelland,M. and Ralph,D. TITLE New species of Borrelia on the Pacific Rim JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Postic,D., Assous,M.V., Grimont,P.A. and Baranton,G. TITLE Diversity of Borrelia burgdorferi sensu lato evidenced by restriction fragment length polymorphism of rrf (5S) -rrl (23S) intergenic spacer amplicons JOURNAL Int. J. Syst. Bacteriol. 44, 743-752 (1994) STANDARD No information REFERENCE 3 AUTHORS Welsh,J., Pretzman,C., Postic,D., Saint Girons,I., Baranton,G. and McClelland,M. TITLE Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups JOURNAL Int. J. Syst. Bacteriol. 42, 370-377 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40596|g710500 biol_source= Ixodes pacificus isolate_name= DN127 BASE COUNT 436 a 269 c 423 g 364 t 2884 others ORIGIN 1 .......... .......... .......... .CUCGAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAAC ---)------ ---------| ---GUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG--C-(GAA A)-G-C-UGA CGGA|-GCGA ACCU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C -A-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-UA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-----G 1861 CCA--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---C------ --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-G-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.japon3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia japonica.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia japonica. ORGANISM Borrelia japonica. REFERENCE 1 AUTHORS Marconi,R.T., Liveris,D. and Schwartz,I. TITLE Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp. nov. and genomic group 21038 (Borrelia andersonii sp. nov.) isolates JOURNAL J. Clin. Microbiol. 33 (9), 2427-2434 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L46695|g945207 Ref 1: nothing in paper to distinguish Bor.andrsn/2 BASE COUNT 408 a 255 c 401 g 341 t 2971 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---NUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----GU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----GA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UCGGGAUUAA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UGUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGGAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-NC -CU--GGGC- 2821 U-NCU-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.japon4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia japonica.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia japonica. ORGANISM Borrelia japonica. REFERENCE 1 AUTHORS Marconi,R.T., Liveris,D. and Schwartz,I. TITLE Identification of novel insertion elements, restriction fragment length polymorphism patterns, and discontinuous 23S rRNA in Lyme disease spirochetes: phylogenetic analyses of rRNA genes and their intergenic spacers in Borrelia japonica sp. nov. and genomic group 21038 (Borrelia andersonii sp. nov.) isolates JOURNAL J. Clin. Microbiol. 33 (9), 2427-2434 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L46696|g945208 Ref 1: nothing in paper to distinguish Bor.andrsn/2 BASE COUNT 412 a 260 c 395 g 340 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAAC ---)------ ---------| ----UU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAA-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UGUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -UU(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-NC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-AC.. .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.japoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia japonica str. HO14. ACCESSION No information KEYWORDS No information. SOURCE Borrelia japonica str. HO14. ORGANISM Borrelia japonica. REFERENCE 1 AUTHORS McClelland,M. and Ralph,D. TITLE New species of Borrelia on the Pacific Rim JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40597|g710501 (bases 1 to 1493) isolate_name= HO14 BASE COUNT 435 a 271 c 426 g 361 t 2883 others ORIGIN 1 .......... .......... .........C CCUCGAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAC---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUAAAC- ---)------ ---------| ---GUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-G-C-UGA CGGA|-GCGA ACCU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCAU A-AAA-UA-C -A-CAG-C(- UC-A)A-CUG -UG-G-AGC- 1321 -UAUG-UUGG A-AAC-UGUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-----G 1861 CCA--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---C------ --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAA-C-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.japon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia japonica str. IKA2. ACCESSION No information KEYWORDS No information. SOURCE Borrelia japonica str. IKA2. ORGANISM Borrelia japonica. REFERENCE 1 AUTHORS McClelland,M. and Ralph,D. TITLE New species of Borrelia on the Pacific Rim JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40598|g710502 isolate_name= IKA2 NB: GCCAGAUCUGAGCUCCAAUUCGCC removed from 3' end BASE COUNT 444 a 275 c 437 g 372 t 2848 others ORIGIN 1 .......... .......... .......... ..UCGAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-C--GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-G-C-UGA CGGA|-GCGA -ACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AG-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-GU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAC- 1321 -UAUG-UUGG A-AAC-UGUA U-AUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-C-UUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---C------ --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.bur219 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. VS219. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. VS219. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE diagnosis of Lyme disease and for species- specific identification of Lyme disease isolates by 16S rRNA signature nucleotide analysis Development of polymerase chain reaction primer sets for JOURNAL J. Clin. Microbiol. 30, 2830-2834 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M89938|g173930 isolate_name= VS219 BASE COUNT 377 a 227 c 362 g 314 t 3096 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUCU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-A--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---NUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GU- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG........ .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .....GGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.borg22 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS ,E.K., Gwinn,M., Dougherty,B., Tomb,J.-F., Fleischmann,R.D., Richardson,D., Peterson,J., Kerlavage,A.R., Quackenbush,J., Salzberg,S., Hanson,M., van-Vugt,R., Palmer,N., Adams,M.D., Gocayne,J.D., Weidman,J., Utterback,T., Watthey,L., McDonald ,L., Artiach,P., Bowman,C., Garland,S., Fujii,C., Cotton,M.D ., Horst,K., Roberts,K., Hatch,B., Smith,H.O. and Venter,J.C . Fraser,C.M., Casjens,S., Huang,W.M., Sutton,G.G., Clayton,R .A., Lathigra,R., White,O., Ketchum,K.A., Dodson,R., Hickey TITLE Genomic sequence of a Lyme disease spirochete, Borrelia burgdorferi JOURNAL Nature 390, 580-586 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000783 (bases 444581 to 446118) BASE COUNT 450 a 280 c 435 g 373 t 2838 others ORIGIN 1 .......... .......... .......... .AAAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGCUGGA UCACCUCCUU 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg82 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. Sh-2-82. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. Sh-2-82. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60969|g173933 geog_source= Shelter Island, NY biol_source= Ixodes dammini ticks isolate_name= Sh-2-82 BASE COUNT 432 a 267 c 407 g 358 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUUU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAC- ---)------ ---------| ---ANU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AUA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAN A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -AU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGNAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A....... .)..CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burB31 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. B31 ATCC 35210 (T). ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. B31 ATCC 35210 (T). ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35210 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57404|g39347 isolate_name= B31 BASE COUNT 433 a 267 c 399 g 352 t 2925 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 --AU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAC- ---)------ ---------| ---ANU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( -U-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UC- -(UACG)--- GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAN A)-G-C-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC C-UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAA ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -AU-GGGC|G UAAA-GG-U- GAG-UA--GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGCAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--A--GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- U-AA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A....... .)..CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-N---NG-U |GC-U(-GUG A)-GGUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GG-C- 2821 U-ACA-CA-C GUG--CUACA ACGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-GA-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgIl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. Illinois 1. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. Illinois 1. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE diagnosis of Lyme disease and for species- specific identification of Lyme disease isolates by 16S rRNA signature nucleotide analysis Development of polymerase chain reaction primer sets for JOURNAL J. Clin. Microbiol. 30, 2830-2834 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M89936|g173928 isolate_name= Illinois 1 BASE COUNT 351 a 207 c 330 g 286 t 3202 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUNU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-CU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AUA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-N-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG........ .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- U......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg04 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 20004. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 20004. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64310|g173941 geog_source= France biol_source= Ixodes ricinus isolate_name= 20004 BASE COUNT 432 a 267 c 410 g 358 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAN- ---)------ ---------| ---NGU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UNN- GN-NA-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UN- AGG....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg52 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 1352. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 1352. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE of North American and European isolates of B. burgdorferi Phylogenetic analysis of the genus Borrelia: A comparison JOURNAL J. Bacteriol. 174, 241-244 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64309|g173943 geog_source= Texas biol_source= tick Amblyomma americanum isolate_name= 1352 BASE COUNT 431 a 269 c 410 g 360 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --NNUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -ANA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAN A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UNN- GN-NA-UCCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-U-- CAC-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burCA2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. CA2-87. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. CA2-87. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Marconi,R.T. and Garon,C.F. TITLE diagnosis of Lyme disease and for species- specific identification of Lyme disease isolates by 16S rRNA signature nucleotide analysis Development of polymerase chain reaction primer sets for JOURNAL J. Clin. Microbiol. 30, 2830-2834 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M89935|g173927 isolate_name= CA2-87 BASE COUNT 354 a 208 c 330 g 286 t 3198 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~AAAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUNU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAC- ---)------ ---------| ---ANU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 NAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUUAG-UAC 1741 CG........ .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| NCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- U......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgd6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Gazumyan,A., Schwartz,J.J., Liveris,D. and Schwartz,I. TITLE disease spirochete, Borrelia burgdorferi Sequence Analysis of the Ribosomal RNA operon of the Lyme JOURNAL Gene 146, 57-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U03396 NB: same sequence as Bor.burgd5 (M88329) BASE COUNT 447 a 281 c 436 g 373 t 2839 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUCU-C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgd5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi.. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Weissensee,P., Gazumyan,A., Zimmermann,E., Goldberg,N.S., Bittker,S. and Campbell,G.L. Schwartz,I., Wormser,G.P., Schwartz,J.J., Cooper,D., TITLE reaction amplification and culture of skin biopsies from erythema migrans lesions Diagnosis of early Lyme disease by polymerase chain JOURNAL J. Clin. Microbiol. 30, 3082-3088 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88329 legacy_attribute= auth line 3:Goldberg,N.S., Bittker,S., Campbell,G.L. and et al. NB: same sequence as Bor.burgd6 (U03396) BASE COUNT 447 a 281 c 436 g 373 t 2839 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUCU-C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg21 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. ESP-1. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. ESP-1. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Backenson,P.B., Garcia-Monco,J.C., Anda,P. and Benach,J.L. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28501|g903612 isolate_name= ESP-1 BASE COUNT 427 a 292 c 413 g 361 t 2883 others ORIGIN 1 .......... .......... .......... ...AUAACGA AGAGUU(U-- -)--NC-|-N 61 CNUGGC-AGC -UAAC-GC-- UGGC-NGU-G -CGU-CU--U AAGC-UUGC- A-GUC-UAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------A- -)UA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUCU-C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CCCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AC-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UANC ---------C 1141 -CCCGNCU-- AUUAC-GUN( CCA--NCANC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAN-CGUUGU UC-GGGAUUA -UU-GG-C|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 CC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG--CGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACU--CC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GNAA-AGNCC CCCNN-NNCN N(CCN-C)UN CNNCNC--CC NNNCC..... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgdo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. B31 ATCC 35210 (T). ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. B31 ATCC 35210 (T). ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35210 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59293 isolate_name= B31 BASE COUNT 421 a 255 c 390 g 346 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAAUAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUUAG-AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| ---CUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GNAGC CGCGGUA-A) U-A-C-GUAA |-GGG..... 1201 .AG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|A|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GN-GAAAC.. .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-CA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgd9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. DK7. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. DK7. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85195|g793780 isolate_name= DK7 BASE COUNT 437 a 271 c 424 g 356 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UC----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAC UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AGUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. LIPITZ. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. LIPITZ. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85203|g793783 isolate_name= LIPITZ BASE COUNT 438 a 269 c 423 g 358 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. Kipp. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. Kipp. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85196|g793782 isolate_name= Kipp BASE COUNT 437 a 269 c 424 g 358 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- GAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. DUNKIRK. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. DUNKIRK. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85201|g793781 isolate_name= DUNKIRK BASE COUNT 439 a 268 c 423 g 358 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AA-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-AUC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burg16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. MUL. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. MUL. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85200|g793784 isolate_name= MUL BASE COUNT 438 a 270 c 423 g 356 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGNU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgd8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 272. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 272. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85189|g793770 isolate_name= 272 BASE COUNT 438 a 270 c 422 g 356 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUN C-CNCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GC(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-GU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bor.burgd7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Borrelia burgdorferi str. 297. ACCESSION No information KEYWORDS No information. SOURCE Borrelia burgdorferi str. 297. ORGANISM Borrelia burgdorferi. REFERENCE 1 AUTHORS .-M. and Hansen,K. Theisen,M., Borre,M., Mathiesen,M.J., Mikkelsen,B., Lebech,A TITLE OspC Evolution of the Borrelia burgdorferi outer surface protein JOURNAL J. Bacteriol. 177, 3036-3044 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85204|g793771 isolate_name= 297 BASE COUNT 437 a 270 c 423 g 358 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -UAAC-GC-- UGGC-AGU-G -CGU-CU--U AAGC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUAU---G -AGAU-G-GG 421 -GAU-AA-CU A--------- ------UU-- A(-GAAA-)U -AGUA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------G-U CA-G--U--- ---UAA-(-- --------UU 541 UG-------- -)-UUA---- -A-UU----G AU--GAAAG- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- G--CUU---- 661 ----GUAG-- AUG---A-|G UCUGC----- -GU|----CU U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-UG) -C-CUACC-A C|-GGC-AA- UGA------- -----UA-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-U 901 AAG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CACU-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--GA-AA --)GA-UUGU AAA--AUUC| UUUU-AU-AA 1021 --AU-GAG-- GA-AUAA-GC --UUU-GUA( G----GAAA- -----U---) GACA-AA-GU 1081 ---------- -------G-A U-GA-CGUU- A-AUU-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUGU UC-GGGAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GA-UA- 1261 U-AU-AAG|U CUA--UGCAU A-AAA-UA-C CA-CAG-C(- UC-A)A-CUG -UG-G-ACC- 1321 -UAUG-UUGG A-AAC-UAUA U-GUCUA-GA GUC-----UG A-UA-GAGGA AGU-U|AGAA 1381 UU-UCUGGU- GUA-AGG(-G UGGAA)-UCU -GU-UGAU-A UC-AGAAAG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGA- -ACUUCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAC- G-CU-GU--A 1621 AAC-G-AUGC A--CA-CU-- -------U|G -GU-GU-UAA -CU------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------A -GUUAG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- -------U-A ---UAGG--- -AU----AUA 1981 -GUU-A--(- GAGA-)-UAA -U-UAUU--- CC-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCU-AU-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-U(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUC- 2281 UG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GAU-AA-G A-CU-G-CCG --GU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG CGA-A-G-C- GA-AAC-A(G 2881 -UGA)UGUG- ---------- AA-GCAAA-A CGCAU-AAAG -CA-G-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGAAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AUA-(UC -AGA-AU)-G AUA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGA- GG-AU-ACCC -GAA-G-CUA 3121 U-UAU-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-GU-AU-UU A-AGGU-AUG UUU-AG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC U(GGA-A)AG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4-LEP 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4 LEPTOSPIRA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4 LEPTOSPIRA_SUBDIVISION. ORGANISM 2.13.4 LEPTOSPIRA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4.1 LEPTOSPIRA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4.1 LEPTOSPIRA_GROUP. ORGANISM 2.13.4.1 LEPTOSPIRA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4.1.1 LPS.INTERROGANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4.1.1 LPS.INTERROGANS_SUBGROUP. ORGANISM 2.13.4.1.1 LPS.INTERROGANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.weili3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira weilii str. Worsfold, isolate WA 52. ACCESSION No information KEYWORDS No information. SOURCE Leptospira weilii str. Worsfold, isolate WA 52. ORGANISM Leptospira weilii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12677|g558938 isolate_name= Worsfold, isolate WA 52 BASE COUNT 383 a 332 c 455 g 316 t 2890 others ORIGIN 1 .......... .......... .......... ..UCGAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AU-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- CUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.weili4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira weilii str. Sarmin, isolate WB46. ACCESSION No information KEYWORDS No information. SOURCE Leptospira weilii str. Sarmin, isolate WB46. ORGANISM Leptospira weilii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12673|g558932 isolate_name= Sarmin, isolate WB46 BASE COUNT 384 a 332 c 452 g 315 t 2893 others ORIGIN 1 .......... .......... .......... ....GAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UA (--GC----- ---------- ---------- 241 --------AA -)UA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AU-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- CUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AU ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA--C-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.weili2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira weilii str. Celledoni, isolate WA 45 ATCC 43285. ACCESSION No information KEYWORDS No information. SOURCE Leptospira weilii str. Celledoni, isolate WA 45 ATCC 43285. ORGANISM Leptospira weilii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43285 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12676|g558937 isolate_name= Celledoni, isolate WA 45 isolate_name= celledoni BASE COUNT 382 a 331 c 452 g 315 t 2896 others ORIGIN 1 .......... .......... .......... ........UC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AU-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- CUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.weilii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira weilii str. Celledoni, isolate WA 45 ATCC 43285. ACCESSION No information KEYWORDS No information. SOURCE Leptospira weilii str. Celledoni, isolate WA 45 ATCC 43285. ORGANISM Leptospira weilii. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43285 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21637|g433589 isolate_name= Celledoni, isolate WA 45 isolate_name= celledoni BASE COUNT 361 a 322 c 426 g 299 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AA-C-AUCC- A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AU-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- CUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.sanro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira santarosai str. LT81, isolate SA39. ACCESSION No information KEYWORDS No information. SOURCE Leptospira santarosai str. LT81, isolate SA39. ORGANISM Leptospira santarosai. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12672|g558931 isolate_name= LT81, isolate SA39 BASE COUNT 383 a 332 c 453 g 311 t 2897 others ORIGIN 1 .......... .......... ......CCCC GGCUGCAGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUUC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--U-AG ---AUC-(-- --------AU 541 AG-------- -)-GAU---G UA-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-C--U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--U. .......... ......GC-C UUUAU-G-UC -UA--UGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.sanros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira santarosai str. Shermani 1342K ATCC 43286. ACCESSION No information KEYWORDS No information. SOURCE Leptospira santarosai str. Shermani 1342K ATCC 43286. ORGANISM Leptospira santarosai. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43286 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21649|g433588 isolate_name= Shermani 1342K BASE COUNT 369 a 321 c 424 g 299 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUUCA A--UC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--A AUCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--U-AG ---AUC-(-- --------AU 541 AG-------- -)-GAU---G UA-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-CC-U GU-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UA--UUG- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA CU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.borgp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 43292 (T). ACCESSION No information KEYWORDS No information. SOURCE Leptospira borgpetersenii str. Veldrat Bataviae 46 ATCC 43292 (T). ORGANISM Leptospira borgpetersenii. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43292 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21630|g433579 geog_source= Indonesia biol_source= Java house rat, Rattus brevicaudatus isolate_name= Veldrat Bataviae 46 BASE COUNT 369 a 327 c 430 g 297 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUCCA A-UCC-AAAG 121 C--GG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AG-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.borgp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira borgpetersenii str. 1627 Burgas, isolate BD30. ACCESSION No information KEYWORDS No information. SOURCE Leptospira borgpetersenii str. 1627 Burgas, isolate BD30. ORGANISM Leptospira borgpetersenii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12669|g558928 isolate_name= 1627 Burgas, isolate BD30 BASE COUNT 385 a 330 c 454 g 311 t 2896 others ORIGIN 1 .......... .......... .......... ..UCGAGGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC--AAG 121 C--GG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AG-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUA U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-ANNN-NN NAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.borgp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira borgpetersenii str. Hardjo bovis/Sponselee, isolate BD50. ACCESSION No information KEYWORDS No information. SOURCE Leptospira borgpetersenii str. Hardjo bovis/Sponselee, isolate BD50. ORGANISM Leptospira borgpetersenii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12670|g558929 isolate_name= Hardjo bovis/Sponselee, isolate BD50 BASE COUNT 385 a 346 c 464 g 315 t 2866 others ORIGIN 1 ........CG GGUGGCGGCC GCUCUAGCCC GGCUGCAGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC--AAG 121 C--GG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGGA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---GUC-(-- --------AU 541 AG-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGCG-- CUG---A-|G CCCGC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCGA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.noguc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira noguchii str. Fort Bragg, isolate NB36. ACCESSION No information KEYWORDS No information. SOURCE Leptospira noguchii str. Fort Bragg, isolate NB36. ORGANISM Leptospira noguchii. REFERENCE 1 AUTHORS Ralph,D. and McClelland,M. TITLE Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus JOURNAL J. Bacteriol. 176, 5982-5987 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12671|g558930 isolate_name= Fort Bragg, isolate NB36 BASE COUNT 392 a 342 c 462 g 314 t 2866 others ORIGIN 1 .....GGACG GGUGGCGGCC GCUCUAGCCC GGCUGCAGUC GACGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUNC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AU 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GG-GGG-C(- UC-A)A-CUC -CC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUNC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --C--(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UNGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.meyeri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira meyeri str. Ranarum ICF ATCC 43287. ACCESSION No information KEYWORDS No information. SOURCE Leptospira meyeri str. Ranarum ICF ATCC 43287. ORGANISM Leptospira meyeri. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43287 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21648|g433585 biol_source= kidneys of a leopard frog (Rana pipiens) isolate_name= Ranarum ICF BASE COUNT 372 a 324 c 421 g 299 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUCCA A--UC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UU-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AU 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AAUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GG-GGG-C(- UC-A)A-CUC -CC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UAA-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAC -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACC-CCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.interR 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira interrogans str. icterohaemorrhagiae RGA. ACCESSION No information KEYWORDS No information. SOURCE Leptospira interrogans str. icterohaemorrhagiae RGA. ORGANISM Leptospira interrogans. REFERENCE 1 AUTHORS Bryden,J., Gatehouse,L., Gatehouse,J.A. and Hookey,J.V. TITLE Automated PCR cycle sequencing of 16S ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z12817 legacy_attribute= biovar:sensu stricto isolate_name= icterohaemorrhagiae RGA NB: seq at beginning: CAUUGCCAAGUCC more likely to be CAUGCAAGUC BASE COUNT 365 a 319 c 418 g 294 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAU-UGCCA A-GUCCAAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCU---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AU 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAU -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.kirsch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira kirschneri str. cynopteri 3522 C. ACCESSION No information KEYWORDS No information. SOURCE Leptospira kirschneri str. cynopteri 3522 C. ORGANISM Leptospira kirschneri. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21628|g433582 isolate_name= cynopteri 3522 C BASE COUNT 369 a 326 c 423 g 299 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGUCUU--A AACA-UUCCA A-GUCCAAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GU-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AU 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAU -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.noguch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira noguchii str. Panama CZ 214 ATCC 43288 (T). ACCESSION No information KEYWORDS No information. SOURCE Leptospira noguchii str. Panama CZ 214 ATCC 43288 (T). ORGANISM Leptospira noguchii. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43288 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21635|g433586 geog_source= Panama biol_source= opossum kidney, Didelphis marsupialis isolate_name= Panama CZ 214 NB: ATCC and Bacterial Nomenclatural both say noguchii NCBI says that the species is noguchi BASE COUNT 369 a 323 c 422 g 307 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGU-G -CGUCUU--A AACA-UUCCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AACG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-AGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AU 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-CA 1021 --GGGGAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-UGUG-C-- 1201 AAG-CGUUGU UCCGGAUUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-CU--(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC UA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -UAGG-C-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-AGA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAN -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-A CCA-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.borgpe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira borgpetersenii str. Moulton, serovar canicola. ACCESSION No information KEYWORDS No information. SOURCE Leptospira borgpetersenii str. Moulton, serovar canicola. ORGANISM Leptospira borgpetersenii. REFERENCE 1 AUTHORS Fukunaga,M., Horie,I., Okuzako,N. and Mifuchi,I. TITLE Nucleotide sequence of a 16s rRNA gene for Leptospira interrogans serovar canicola strain Moulton JOURNAL Nucleic Acids Res. 18, 366-366 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X17547 isolate_name= Moulton, serovar canicola BASE COUNT 393 a 342 c 456 g 317 t 2868 others ORIGIN 1 .......... .......... .......... ...AACACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCU---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AC 541 AA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CC--UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CUC -GC-A-GCC- 1321 -UGCA-CUUG A-AAC-UAUG U-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAU -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- AAG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.interK 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira interrogans str. Kennewicki, serovar pomona. ACCESSION No information KEYWORDS No information. SOURCE Leptospira interrogans str. Kennewicki, serovar pomona. ORGANISM Leptospira interrogans. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M71241 isolate_name= Kennewicki, serovar pomona BASE COUNT 331 a 298 c 389 g 277 t 3081 others ORIGIN 1 .......... .......... .......... ....ACACNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UNAC-GC-- UGGC-GGC-G -CGU-CU--U NAAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCU---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GGAA-G--C UAAUACU-GG 481 AU-GGU---- ---------- -------C-C CG-A--G-AG ---AUC-(-- --------AC 541 NA-------- -)-GAU---U UU-UC----G GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUNN--- ---)------ ---------| -----U--U- G--CUC---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CNA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GGA A)-CCC-UNA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-N ACUAC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... ....C-UNUG U-GUCUG-GA GUU-----UG G-GA-GAGGC NAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UN)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UNA- ---C)G-GA- UUNA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -NAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UAG-GC-UUG ACA-UG|--- -------G-A ---GUGG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CCG-CU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -NU)-CCNGC AA-------- CGAG-C--GC AACCC-UN-A |-CN--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-N NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCNA-AAAU -CC-G-GUC- CCNGUUCGGA 2941 U-UGGAGUC- (UGCNAC-U- N)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 UCUUU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-AC-UA-CU A-AGGU-GAA ACU-CG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.inadai 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira inadai str. lyme ATCC 43289. ACCESSION No information KEYWORDS No information. SOURCE Leptospira inadai str. lyme ATCC 43289. ORGANISM Leptospira inadai. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43289 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21634|g433581 biol_source= skin biopsy of patient with Lyme disease isolate_name= lyme BASE COUNT 358 a 311 c 413 g 289 t 3005 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GU-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-U C-CUCC---G -AGUC-U-GG 421 -GAU-AA-CU U--------- ------UC-- C(-GAAA-)G -GAAA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-C UA-C--U-GG ---AUC-(-- --------AC 541 AG-------- -)-GAU---C UG-AU----A GG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AUUA-AG-CA 1021 --GG-GAA-- AA-AUAA-GC --A------( -----GCAA- ---------) ------U-GU 1081 ---------- -------G-A U-GA-UGGU- A-CCU-G-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CAG---GUGU G-AAA-AC-U GC-GGG-C(- UC-A)A-CCC -GU-G-GCC- 1321 -UGCA-CUUG A-AAC-UACA A-GUCUG-GA GUU-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUG-- ---------- ---------- ---------G 1501 CUC--AA-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------ACC -CUCAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- -------G-A ---UCUG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAU -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAG-AU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACC--UC-A |-CC--UUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-U AG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAN -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCUG A--GU-GGG- GA-GC-ACCC -GAA-G-UGG 3121 U......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4.1.2 LPS.BIFLEXA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4.1.2 LPS.BIFLEXA_SUBGROUP. ORGANISM 2.13.4.1.2 LPS.BIFLEXA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.sp183 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira sp. str. A-183. ACCESSION No information KEYWORDS No information. SOURCE Leptospira sp. str. A-183. ORGANISM Leptospira sp. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34261 isolate_name= A-183 BASE COUNT 410 a 330 c 428 g 320 t 2888 others ORIGIN 1 ~~~~~~~~~A AAUUGGUAGC AAUACCAGAU UUCAACACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-U-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CU--UUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)GCUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-G C-AC-UU-CU A-AGGU-GAA ACU-CG.... .......... 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.biflAa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa str. Porto. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa str. Porto. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21629|g433526 Former RDP Sids: Anco.anco Ann.ancona legacy_attribute= biovar:sensu lato ancona; salt water isolate isolate_name= Porto NB: Hookey et al. conclude this should be new species former name Ancona ancona BASE COUNT 392 a 319 c 430 g 308 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U A-AC-AUGCA A-GUC--AAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -UGG-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--GAA--- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUC- 2281 UG--UUG--C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-U AG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)G-UG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 AC--CGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-G C-AC-UU-CU A-AGGU-GAA ACU-CG-UG- AAG-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCCGUAU C(GGA-A)GG UGUCU..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.bifle2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa str. Tororo ATCC 23583. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa str. Tororo ATCC 23583. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Hookey,J.V. and Cacciapuoti,B. TITLE Characterisation of Leptospira biflexa parent and mutant strains JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23583 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26969 isolate_name= Tororo BASE COUNT 376 a 312 c 408 g 298 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... UAUC-AUCCA C-GUC-ACUC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AC -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----CUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CU--UUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)GCUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- --CAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGA-G-G C-AC-UU-CU A-AGGU-GAA ACU-CG-UG- AAG-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.bifle3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa str. Tororo, parent strain. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa str. Tororo, parent strain. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Hookey,J.V. and Cacciapuoti,B. TITLE Characterisation of Leptospira biflexa parent and mutant strains JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26970|g438112 isolate_name= Tororo, parent strain BASE COUNT 374 a 302 c 409 g 300 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......UAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G......(. ....)....U ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-G-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCUG GGGGACUUAC 1801 GCU-C---(G CAA)---G-A GUUGAAACUC -AAAGGGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGGUG-GAG CAU-GU-GGU -UUAAUU-UC G(AUGAAU-A C)GCGAAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----CUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GUUGC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(GUUG A)-GAUUUUU 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-U--A |-CU--UUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)GCUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGA-G-G C-AC-UU-CU A-AGGU-GAA ACU-CG-UG- AAG-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.biflJj 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa.. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21633|g433578 Former RDP Sids: Jeq.jeqtai legacy_attribute= biovar:sensu lato jequitaia; freshwater isolate NB: former name Jequitaia jequitaia BASE COUNT 374 a 308 c 397 g 298 t 2999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUUCA A-GUC-AAAA 121 C--GG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA-CCCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---ACAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- ---------A ---CGUG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---GG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUG- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-U-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)G-UG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAUUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCU-CGGUC- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UC -UA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.biflCc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa.. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21631|g433538 Former RDP Sids: Can.canela legacy_attribute= biovar:sensu lato canela; freshwater isolate NB: Hookey et al. conclude this distinct from other Lps spp. former name Canela canela BASE COUNT 376 a 315 c 410 g 305 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUUCA A-GUCCAUUA 121 C--GG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------GA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AUUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA-CCCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CN C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GN-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A--CC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 A-C-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACAUUG|--- -------C-A ---CGUG--- -AA----UCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---GG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--UC AA-CC-UU-A |-CU--UUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU GAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AAG-C(G 2881 -CAA)GCUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GCC- CCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUU A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UC -UA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A C-AC-UU-CU A-AGGU-GAA ACU-CG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.biflex 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira biflexa str. patoc Patoc 1. ACCESSION No information KEYWORDS No information. SOURCE Leptospira biflexa str. patoc Patoc 1. ORGANISM Leptospira biflexa. REFERENCE 1 AUTHORS Bryden,J., Gatehouse,L., Gatehouse,J.A. and Hookey,J.V. TITLE Automated PCR cycle sequencing of 16S ribosomal RNA genes JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z12821 isolate_name= patoc Patoc 1 BASE COUNT 381 a 306 c 408 g 300 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUUCA A-GUC-AAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUGG -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----CUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGG-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--UC AACCC-UU-A |-CU--UUC- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-U-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-U-C- CA-AAC-U(G 2881 -CCA)AGUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAGUC- (UNCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-N CCU-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-G C-AC-UUGCU A-AGGU-GAA ACU-CG-UG- AGG-GAGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.wolbac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira wolbachii str. CDC Biflexa ATCC 43284. ACCESSION No information KEYWORDS No information. SOURCE Leptospira wolbachii str. CDC Biflexa ATCC 43284. ORGANISM Leptospira wolbachii. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J., Gatehouse,L., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43284, CDC Biflexa ATCC 43284 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21638|g433590 isolate_name= CDC Biflexa BASE COUNT 383 a 317 c 414 g 301 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-CUC-AUAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGA- UAA--CCU-A C-CUAG---A -AGUU-G-GG 421 -GAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------A-C -G-G--U-UC ---CUG-(-- --------GU 541 AG-------- -)-CAG---G GA-UU----G GU--UAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UUAG-- AUG---G-|G UCCAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| AGUA-AG-UA 1021 --GG-GAC-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CC U-AA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GA-CU- 1261 A-AC-AAG|U CAG---GUGU G-AAA-UC-U UC-GGG-C(- UC-A)A-CUC -GA-A-ACC- 1321 -UGCA-UUUG A-AAC-UGUU A-GUCUG-GA AUC-----UG G-GA-GAGGC AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUUGCUG-- ---------- ---------- ---------G 1501 CCU--AA-GA UUGACG-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--UA-CC-- -------A|G -UU-GU-UAG -AG-G----- -U-------- 1681 -(AUU-AA)C U--------- ---------- ---------- --------CC -UCUAG-UAA 1741 CG--AA---- --CC-(UAA- ---C)G-GA- UUAA-GUAGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|--- -------C-A ---CGUG--- -AA----CUA 1981 -UGU-A--(- GAGA-)-UAC -A-UGGG--- ---------- ---CC----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CGC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---GG-U |GU-C(-GUG A)-GAUGG-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--UC AACCC-CU-A |-CC--GUG- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-GAA-AG-A A-CU-U-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-U-C- CA-AAC-U(G 2881 -CCA)AGUG- ---------- GA-GCUAA-U CUCUU-AAAA -CC-G-GUC- CCAGUUCAGA 2941 U-UGGAUUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCU-CGGUG- AAUAC-GUU- CCC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCUG A--GU-GGG- GA-GC-ACCC -GAA-G-AGG 3121 UUGUC-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A C-AC-UU-CU A-AGGU-GAA ACU-CG-UG- AGG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4.2 LEPTONEMA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4.2 LEPTONEMA_GROUP. ORGANISM 2.13.4.2 LEPTONEMA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lps.parva 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptospira parva str. H. ACCESSION No information KEYWORDS No information. SOURCE Leptospira parva str. H. ORGANISM Leptospira parva. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis to investigate the phylogeny of Leptospiraceae and related spirochaetes JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21636|g433587 legacy_attribute= incertae sedis isolate_name= H BASE COUNT 337 a 305 c 427 g 289 t 3018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GU-- UGGC-GAU-G -CGU-CU--U AAGC-AUGCA A-GUC-GACC 121 G--AU----- -----CU--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--UC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUAGG- A-A--UCU-A C-CUCG---A -AGAG-C-GG 421 -GAC-AA-CU U--------- ------UG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---ACA-(-- --------GA 541 GA-------- -)-UGU---- ---------- ----UAAA-- ---GGGCUA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UAGU---C- G--CUU---- 661 ----CGAG-- AUG---A-|G CCUGC----- -GG|----UC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- ------C-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-A-UCUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUUC| GGUA-GA-CU 1021 --GG-GAA-- GA-AGAA-CU --ACG-UUC( -----GUUGA ---------) GGGC-GU-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCA-G-UC U-GA----AG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---UGGU U-UAA-UC-U C--GGG-C(- UC-A)A-CCC -AG-A-GUC- 1321 -AGCC-UCCA A-AAC-UGGC G-AACUU-GA GUA-----CG A-UA-GGGGA UAG-C|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-GAGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUAUCUG-- ---------- ---------- ---------G 1501 AUC--GU-AA CUGACA-CUC AU-G------ -------AG- C-GAAA-GU- GC-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-UUGU A--UA-CU-- -------A|G -UU-GU-UGG -UG-G----- -U-------- 1681 -(UUC-AA)C G--------- ---------- ---------- --------CC -AUCAG-UGA 1741 CG--UC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAU 1801 GCU-C---(G CAA)---G-G GU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGAUA-C G)--CGAGAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|--- -------G-A ---UUUG--- -AC----UGG 1981 -GGU-A--(- GAGA-)-UAC -C-CCUU--- ---------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- A-)------- GG-------- ---------| CGA--U-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-A |-CC--NUN- 2281 UG--UUNC-C AU-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-N- G-NAN-GG-A A-CU-G-CCG --GU(-GA-N AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAA GGA-A-G-C- GA-AGU-C(G 2881 -UGA)GAUG- ---------- GA-GCAGA-U CNGAN-AAAG -CC-G-NUC- NCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCNG A--GU-NGG- NA-GN-NCCC -GAA-G-UGG 3121 U......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpn.illini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptonema illini str. 3055. ACCESSION No information KEYWORDS No information. SOURCE Leptonema illini str. 3055. ORGANISM Leptonema illini. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Weisburg,W.G., Tordoff,L.A., Fraser,G.J., Hespell,R.B., Stanton,T.B., Zablen,L.B., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the spirochetes JOURNAL J. Bacteriol. 173, 6101-6109 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88719|g175128 Former RDP Sids: Lps.illini isolate_name= 3055 NB: former name Leptonema -> Leptospira -> Leptonema illini BASE COUNT 391 a 367 c 478 g 290 t 2850 others ORIGIN 1 ~~~~~~~~~~ ~UAAUCUAUC GCAAGAUAGA UUCAUAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -UAAC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-GAGC 121 G--GC----- -----AG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 -------CGG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UUU-G C-CCAC---G -GAUG-G-GG 421 -GAU-AA-CC U--------- ------UU-- C(-GAAA-)G -GAAG-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C CA-U--G-GU ---UAC-(-- --------CA 541 CG-------- -)-GUA---A UU-AU----G GU--CAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--UCU---- 661 ----GUGG-- AGA---A-|G CCUGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CGCAAU-- GG-AG-(GCA A)-CUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| AACA-AA-CA 1021 --GG-GAA-- GA-A------ ---------( -----GAAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-UC U-GA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---GAGU G-AAA-AC-U GA-GGG-C(- UC-A)A-CCC -UC-A-GCC- 1321 -UGCU-UUCG A-AAC-UGGC A-GUCUG-GA GUC-----CC G-GA-GAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AC-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACG--GA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU A--GA-CC-- -------A|G -AC-GU-UGG -AG-G----- -C-------- 1681 -(AUC-AA)C C--------- ---------- ---------- --------CC -UUCAG-UGU 1741 CA--AA---- --CC-(AAA- ---C)G-GA- UUAA-GUCUA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-A ---UCAG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCCU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUG- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- G-CAC-GG-A A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAA GGA-A-G-C- GA-AGU-C(G 2881 -UGA)GAUG- ---------- GA-GCAGA-U CCGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- UA-GU-GCCC -GAA-G-UGG 3121 U-CCG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-AU-UA-UC A-AGGC-AAG AUC-GG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpn.illin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptonema illini str. 3055. ACCESSION No information KEYWORDS No information. SOURCE Leptonema illini str. 3055. ORGANISM Leptonema illini. REFERENCE 1 AUTHORS Hookey,J.V., Bryden,J. and Gatehouse,L. TITLE The use of 16S rRNA sequence analysis JOURNAL J. Gen. Microbiol. 139, 2585-2590 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21632|g433580 Former RDP Sids: Lps.illin2 isolate_name= 3055 NB: former name Leptospira illini BASE COUNT 368 a 348 c 460 g 267 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........S -UARC-GC-- UGGC-GGC-G -CGU-CU--U AAAC-AUGCA A-GUC-GAGC 121 G--GC----- -----AG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 -------CGG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UUU-G C-CCAC---G -GAUG-G-GG 421 -GAU-AA-CC U--------- ------UU-- C(-GAAA-)G -GAAG-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C CA-U--G-GU ---UAC-(-- --------CA 541 CG-------- -)-GUA---A UU-AU----G GU--CAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--UCU---- 661 ----GUGG-- AGA---A-|G CCUGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CGCAAU-- GG-AG-(GCA A)-CUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| AACA-AA-CA 1021 --GG-GAA-- GA-A------ ---------( -----GAAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-UC U-GA----AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---GAGU G-AAA-AC-U GA-GGG-C(- UC-A)A-CCC -UC-A-GCC- 1321 -UGCU-UUCG A-AAC-UGGC A-GUCUG-GA GUC-----CC G-GA-GAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -AC-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACG--GA-GA CUGACG-CUC AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU A--GA-CC-- -------A|G -AC-GU-UGG -AG-G----- -C-------- 1681 -(AUC-AA)C C--------- ---------- ---------- --------CC -UUCAG-UGU 1741 CA--AA---- --CC-(AAA- ---C)G-GA- UUAA-GUCUA C|C|G-CCU- G-GGGACUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAGG-CG -(AUGAUA-C G)--CGAAAA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-A ---CCAG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCCU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUG- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- G-CAC-GG-A A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAA GGA-A-G-C- GA-AGU-C(G 2881 -UGA)GAUG- ---------- GA-GCAGA-U CCGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- UA-GU-GCCC -GAA-G-UGG 3121 U-CCG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-AU-UA-UC A-AGGC-AAG AUC-GG-UG- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.13.4.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.13.4.3 ENVIRONMENTAL_CLONE_OS-7. ACCESSION No information KEYWORDS No information. SOURCE 2.13.4.3 ENVIRONMENTAL_CLONE_OS-7. ORGANISM 2.13.4.3 ENVIRONMENTAL_CLONE_OS-7. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS-7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04704 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT: related to Lps.illini BASE COUNT 223 a 220 c 315 g 176 t 3442 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|G CUUGC----- -GG|----NC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AAG-AAUCUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-CU-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGGC| ACUA-GA-CA 1021 --GG-GAC-- GA-A------ ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-UU G......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ......UUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UA- 1261 U-GU-AAG|U CUG---UUGU G-AAA-UA-C CG-CAG-C(- UU-A)A-CUG -CG-G-UGC- 1321 -UGCG-ACGG A-AAC-UGCA U-AUCUG-GA GUC-----CC G-GA-GAGGC AGA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UCUGCUG-- ---------- ---------- ---------G 1501 ACG--GA-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGU C--GA-CU-- -------A|G -GC-GU-UGG -UA-GG---- ---------- 1681 -(UGA-GA)G ---------- ---------- ---------- -------CCU -AUCGG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGACUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACNGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-GC-UUG ACA-UG|--- -------C-A ---CACG--- -AA----UGG 1981 -GGU-G--(- GAGA-)-CAC -C-UCAG--- CC-------- ---------- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ---------| CGU-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CU--GUG- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UN ---GAN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- A-CAC-GG-A A-CU-G-CCG --RC(-GA-C AA)-GUM-N- -NANN-N-NN 2761 N-NN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAN NGA-G-G-C- KA-ACC-U(G 2881 -C..)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14-PURPL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14 PURPLE_BACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14 PURPLE_BACTERIA. ORGANISM 2.14 PURPLE_BACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1-ALP 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1 ALPHA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1 ALPHA_SUBDIVISION. ORGANISM 2.14.1 ALPHA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1 R.RUBRUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1 R.RUBRUM_ASSEMBLAGE. ORGANISM 2.14.1.1 R.RUBRUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.1 R.RUBRUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.1 R.RUBRUM_GROUP. ORGANISM 2.14.1.1.1 R.RUBRUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.rubrum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum rubrum str. ATH 1.1.1. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum rubrum str. ATH 1.1.1. ORGANISM Rhodospirillum rubrum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M32020 ATCC 11170 (T) = NCIMB 8255 isolate_name= ATH 1.1.1; S.1 BASE COUNT 343 a 344 c 442 g 279 t 2968 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U--C (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUG-C-GG 421 -AAU-AA-UC U--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-YG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-GU 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-N-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GANC- GCG-UAG-GC -U|-GU-CU- 1261 G-AU-UAG|U CAG---AGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUU A-GACUA-GA AUC-----CG U-GA-GAGGG UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CGC--GG-UA UUGACN-NUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-CGG -GG-UA---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------UAC -CUCGG-UGU 1741 CG--NN---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AGUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CC -UA--CAAUG GGC-A-G-C- GA-CCU-C(G 2881 -CGA)GGGG- ---------- AA-GCUAA-U CUCC--AAAA -GG-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACN 3121 N-NNN-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C.. .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.rubrum3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum rubrum str. ATH 1.1.1. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum rubrum str. ATH 1.1.1. ORGANISM Rhodospirillum rubrum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30778|g494951 ATCC 11170 (T) = NCIMB 8255 isolate_name= ATH 1.1.1; S.1 BASE COUNT 339 a 345 c 453 g 269 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUG-C-GG 421 -AAU-AA-UC U--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-GU 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-CU- 1261 G-AU-UAG|U CAG---AGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUU A-GACUA-GA AUC-----CG U-GA-GAGGG UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CGC--GG-UA UUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-CGG -GG-UA---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------UAC -CUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CC -UA--CAAUG GGC-A-G-C- GA-CCU-C(G 2881 -CGA)GGGG- ---------- AA-GCUAA-U CUCC--AAAA -GG-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UAC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGUU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.rubrum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum rubrum str. ATH 1.1.1. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum rubrum str. ATH 1.1.1. ORGANISM Rhodospirillum rubrum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55497 ATCC 11170 (T) = NCIMB 8255 isolate_name= ATH 1.1.1; S.1 BASE COUNT 66 a 66 c 84 g 47 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--CUU---- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUG-C-GG 421 -AAU-AA-UC U--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.rubrum4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum rubrum.. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum rubrum. ORGANISM Rhodospirillum rubrum. REFERENCE 1 AUTHORS Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S, TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87278|g1165141 BASE COUNT 355 a 360 c 475 g 285 t 2901 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUG-C-GG 421 -AAU-AA-UC U--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-GU 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-CU- 1261 G-AU-UAG|U CAG---AGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUU A-GACUA-GA AUC-----CG U-GA-GAGGG UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CGC--GG-UA UUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-CGG -GG-UA---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------UAC -CUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CC -UA--CAAUG GGC-A-G-C- GA-CCU-C(G 2881 -CGA)GGGG- ---------- AA-GCUAA-U CUCC--AAAA -GG-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UAC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.spE12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum sp. str. E-12. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum sp. str. E-12. ORGANISM Rhodospirillum sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D15064|g633102 isolate_name= E-12 BASE COUNT 319 a 309 c 421 g 257 t 3070 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-C- (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UGGUG AGUG-GCNC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUA-C-GG 421 -AAU-AA-UC C--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCUC(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(CAA A)-CCC-UGA NNCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-GU 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -C-UGGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-CAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAA- 1321 -UGCC-UUUG A-UAC-UGUC U-AGCUU-GA AUC-----CG U-GA-GAGGG UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CGC--GG-UA UUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUU-AG AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-CGG -GG-UA---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------UAC -CUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UGAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---CACG--- -CU----AUC 1981 -UCC-A--(- GAGA-)-UGG -A-GNAU--- NN-------- ---NNN---- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NN G-)------- GG-------- ----GA---| CGU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--UUC- 2281 AG--UUGC-C AG-CACU--- ---------- ---------- ----(---UC ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-GN -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -UA--CAAUG GGU-C-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.phmetric 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum photometricum str. E-11. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum photometricum str. E-11. ORGANISM Rhodospirillum photometricum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30777|g494950 isolate_name= E-11 BASE COUNT 336 a 347 c 454 g 267 t 2972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGUA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUG---G -AGUA-C-GG 421 -AAU-AA-UC C--------- ------UU-- G(-GAAA-)C -GAGG-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-GU 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGCUGU UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-CAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAA- 1321 -UGCC-UUUG A-UAC-UGUC U-AGCUU-GA AUC-----CG U-GA-GAGGG UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CGC--GG-UA UUGACG-CUG AG-G------ -------CG- C-GAAA-AC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G AC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-CGG -GG-UA---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------UAC -CUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UGAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---CACG--- -CU----AUC 1981 -UCC-A--(- GAGA-)-UGG -A-GAGU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGU-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--UUC- 2281 AG--UUGC-C AG-CACU--- ---------- ---------- ----(---UC ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -UA--CAAUG GGU-C-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UCC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aqsp.iters 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aquaspirillum itersonii. ACCESSION No information KEYWORDS No information. SOURCE Aquaspirillum itersonii. ORGANISM Aquaspirillum itersonii. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29620|g505519 BASE COUNT 308 a 302 c 401 g 256 t 3109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-....A A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-A C-CUUG---A -AGUA-C-GG 421 -AAU-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------U 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CAAG-- ACG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GAAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AU 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 U-GU-CAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGCA A-GGCUU-GA GUC-----UG U-GA-GAGGA UGG-U|GGAA 1381 UA-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGUGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 CAC--AG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-CGG -GU-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAA -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GGAC-U- ACU----GCU 1981 -GCC-A--(- GAGA-)-UGG -C-GGCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C -UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGU-C-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- AA-GCAAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN116 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN116.. ACCESSION No information KEYWORDS No information. SOURCE clone UN116. ORGANISM clone UN116. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63598 BASE COUNT 86 a 54 c 90 g 79 t 4067 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- CUG-UAG-GU -G|-GU-GA- 1261 U-UU-AAG|U UAG---UGGU G-AAA-UC-C CA-GGG-C(- CC-A)A-CCC -UG-G-AAC- 1321 -UGCC-AUUG A-UAC-UGGA U-CGCUG-GA CCA-----CA A-UA-GAGGU AGA-U|GGAA 1381 UA-UACGGU- GUA-GAG(-G UGACA)-UUC -GU-AGAU-A UC-GUAUAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -UCUACUU-- ---------- ---------- --------GG 1501 AUU--GU-UG GUGACA-CUU AG-A------ -------GA- CGGAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GA(AUUA-G AUAC)-UCU- ---GGGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC A--UA-CU-- -------U|G -UU-GU-UGA -AU-U..... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.2 R.FULVUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.2 R.FULVUM_GROUP. ORGANISM 2.14.1.1.2 R.FULVUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mag.magnet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetospirillum magnetotacticum.. ACCESSION No information KEYWORDS No information. SOURCE Magnetospirillum magnetotacticum. ORGANISM Magnetospirillum magnetotacticum. REFERENCE 1 AUTHORS Eden,P.A., Schmidt,T.M., Blakemore,R.P. and Pace,N.R. TITLE Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA JOURNAL Int. J. Syst. Bacteriol. 41, 324-325 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58171 BASE COUNT 341 a 331 c 439 g 283 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---U -GGUG-G-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-GG- 1261 U-CA-UAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGGA C-CGCUA-GA AUC-----AC G-GA-GAGGG UAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--US-GA UUGASS-CUC AU-G------ -------UG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-UG-UUG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGA 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GACGU-- MUG----UUU 1981 -GCC-A--(- GAGA-)-UGG -U-GACUU-- G--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GA-------- -----C--G| CGU--C-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CG-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-NG -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-GCG--N NUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU-S-S-C- UA-ACU-C(G 2881 -CGA)GG-U- ---------- AUGNCUAA-U CCCU--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mag.magne2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetospirillum magnetotacticum. ACCESSION No information KEYWORDS No information. SOURCE Magnetospirillum magnetotacticum. ORGANISM Magnetospirillum magnetotacticum. REFERENCE 1 AUTHORS Schleifer,K.H., Schuler,D., Spring,S., Weizenegger,M., Amann ,R., Ludwig,W. and Kohler,M. TITLE The genus Magnetospirillum gen. nov. Description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 379-385 (1991) STANDARD No information COMMENTS BASE COUNT 352 a 346 c 455 g 290 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---U -GGUG-G-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-GG- 1261 U-CA-UAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGGA C-CGCUA-GA AUC-----AC G-GA-GAGGG UAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GACGU-- AUG----UUU 1981 -GCC-A--(- GAGA-)-UGG -U-GACUU-- G--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----C--G| CGU-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU-C-G-C- UA-ACU-C(G 2881 -CGA)GAGU- ---------- AU-GCUAA-U CCCU--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mag.spAMB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetospirillum sp. str. AMB-1. ACCESSION No information KEYWORDS No information. SOURCE Magnetospirillum sp. str. AMB-1. ORGANISM Magnetospirillum sp. REFERENCE 1 AUTHORS Burgess,G.J., Kawaguchi,R., Sakaguchi,T., Thornhill,R. and Matsunaga,T. TITLE Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences JOURNAL J. Bacteriol. 175, 6689-6694 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawaguchi,R., Burgess,G.J. and Matsunaga,T. TITLE Phylogeny and 16S rRNA sequence of Magnetospirillum sp. AMB-1, an aerobic magnetic bacterium JOURNAL Nucleic Acids Res. 20, 1140-1140 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D17514|g450310 isolate_name= AMB-1 BASE COUNT 346 a 342 c 446 g 294 t 2948 others ORIGIN 1 .......... .......... .......... ........AU AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-GU--A ACAC-AUCCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---U -GGUG-G-GG 421 -AAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-GG- 1261 U-CA-UAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGGA C-CGCUA-GA AUC-----UC G-GA-GAGGG UAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GACGU-- AUG----UUU 1981 -CCC-A--(- GAGA-)-UGG -U-GACUU-- G--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----C--G| CGU-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU-C-G-C- UA-ACU-C(G 2881 -CGA)GAGU- ---------- AU-GCUAA-U CCCU--AUAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCU-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mag.spMGT1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetospirillum sp. str. MGT-1. ACCESSION No information KEYWORDS No information. SOURCE Magnetospirillum sp. str. MGT-1. ORGANISM Magnetospirillum sp. REFERENCE 1 AUTHORS Burgess,G.J., Kawaguchi,R., Sakaguchi,T., Thornhill,R. and Matsunaga,T. TITLE Evolutionary relationships among Magnetospirillum strains inferred from phylogenetic analysis of 16S rDNA sequences JOURNAL J. Bacteriol. 175, 6689-6694 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D17515|g450311 isolate_name= MGT-1 BASE COUNT 346 a 342 c 446 g 294 t 2948 others ORIGIN 1 .......... .......... .......... ........AU AGAGUU(A-G A)U-CAU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-GU--A ACAC-AUCCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---U -GGUG-G-GG 421 -AAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-GG- 1261 U-CA-UAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCU-UUUG A-UAC-UGGA C-CGCUA-GA AUC-----UC G-GA-GAGGG UAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GACGU-- AUG----UUU 1981 -GCC-A--(- GAGA-)-UGG -U-GACUU-- G--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----C--G| CGU-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 C-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGAC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU-C-G-C- UA-ACU-C(G 2881 -CGA)GAGU- ---------- AU-GCUAA-U CCCU--AUAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCU-CGGUG- AAUAC-GUU- GCC-GGC-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GUA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mag.gryphi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Magnetospirillum gryphiswaldense str. MSR-1 DSM 6361. ACCESSION No information KEYWORDS No information. SOURCE Magnetospirillum gryphiswaldense str. MSR-1 DSM 6361. ORGANISM Magnetospirillum gryphiswaldense. REFERENCE 1 AUTHORS Schleifer,K.H., Schuler,D., Spring,S., Weizenegger,M., Amann ,R., Ludwig,W. and Kohler,M. TITLE The genus Magnetospirillum gen. nov. Description of Magnetospirillum gryphiswaldense sp. nov. and transfer of Aquaspirillum magnetotacticum to Magnetospirillum magnetotacticum comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 379-385 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 6361 isolate_name= MSR-1 BASE COUNT 353 a 346 c 453 g 291 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUUU---C -GCUG-G-GG 421 -GAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-UG- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UC- 1261 G-AU-CAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCU-UUUG A-UAC-UGUC G-AGCUU-GA AUC-----AC G-GA-GAGGG UAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---AACGU-- AUG----AUC 1981 -ACC-A--(- GAGA-)-UGG -U-GACUU-- G--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----C--G| CGU-UC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU-U-G-C- UA-ACC-C(G 2881 -CGA)GGGC- ---------- CA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2042 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2042. str. SBR2042. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2042. str. SBR2042. ORGANISM str. SBR2042. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84581|g871702 isolate_name= SBR2042 BASE COUNT 96 a 75 c 118 g 75 t 4012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -GGG-CU--A ACNC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------NA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UGU-A C-UGUU---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AACA-- AUC---A-|G CCCGC----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GCUU| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4911.. ACCESSION No information KEYWORDS No information. SOURCE clone 4911. ORGANISM clone 4911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89322 BASE COUNT 62 a 45 c 59 g 47 t 4163 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .........A A|-GCC-CA- AGA------- -----UG-CC 781 U-AG-C-CG| -G-UUU--(G -AGA)-GAAC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-GCU -(UACG)--A GCG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GUGA UAUC-GC-UU 961 U-A-GG-G-A U-GAA--G-G CG(--ACAUA --)CG-UUGU AAA--CCUA| AUGA-AU-UA 1021 --UA-UAUA- GA-------- ---------( ------UUA- ---------) ---------- 1081 ---------- ---------- U-GA-CCGU- U-UAU-A-AU U-UA--GAAG ---------U 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.molischi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum molischianum. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum molischianum. ORGANISM Rhodospirillum molischianum. REFERENCE 1 AUTHORS Mack,E.E., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Rhodospirillum sodomense, sp. nov., a Dead Sea Rhodospirillum species JOURNAL Arch. Microbiol. 160, 363-371 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59067 BASE COUNT 356 a 353 c 454 g 283 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---C -GGUG-G-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGNG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-NN-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-N-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GC-GA- 1261 U-CC-AAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCU-UUUG A-UAC-UGGG U-UGCUA-GA AUC-----AC G-GA-GAGGG UAG-G|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GGGAC-- AUC----GAC 1981 -CAG-A--(- GAGA-)-UUU -G-GUCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----N--G| UCC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCUAA-U CCCA--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.fulvum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum fulvum str. 1360 NCIMB 11762 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum fulvum str. 1360 NCIMB 11762 (T). ORGANISM Rhodospirillum fulvum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14433|g633105 NCIMB 11762 (T) = DSM 113 = ATCC 35113 = ATCC 15798 isolate_name= 1360 BASE COUNT 342 a 343 c 443 g 270 t 2978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|NUU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---C -GGUG-G-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGAG-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-CC-AAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCU-UUUG A-UAC-UGGG U-UGCUA-GA AUC-----AC G-GA-GAGGG UAG-G|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-N-GC(-G AA-G)GCGC- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGU 1741 CG--AA---- --CG-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GGGAU-- ACC----GGC 1981 -CAG-A--(- GAGA-)-UUU -G-GCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--A| UCC-GN-CCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCUAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.fulvum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum fulvum str. 1360 ATCC 15798. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum fulvum str. 1360 ATCC 15798. ORGANISM Rhodospirillum fulvum. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15798 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59065 ATCC 15798 = DSM 113 = ATCC 35113 = NCIMB 11762 (T) isolate_name= 1360 BASE COUNT 344 a 337 c 438 g 270 t 2987 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----NG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GCGC- 361 -N-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-A C-CUCU---C -GGUG-G-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGNN-- AUU---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-NN-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-N-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GC-GA- 1261 U-CC-AAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCU-UUUG A-UAC-UGGG U-UGCUA-GA AUC-----AC G-GA-GAGGG UAG-G|GNNA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUACCUG-- ---------- ---------- ---------G 1501 CCG--UC-GA UUGACG-CUC AU-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GGGAU-- ACC----GGC 1981 -CAG-A--(- GAGA-)-UUU -G-GCCN--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----N--A| UCC-CC-NCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU....... ...AC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCUAA-U CCCC--NAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGNNN- NUN-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1030 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1030. str. SBR1030. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1030. str. SBR1030. ORGANISM str. SBR1030. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84473|g871594 isolate_name= SBR1030 BASE COUNT 88 a 86 c 127 g 68 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AU-GC (--UU----- ---------- ---------- 241 --------CG -)GC-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-A C-CCUG---G -GAUG-G-GG 421 -AAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GC--C- GU-CCG---- 661 -----AGG-- AGG---G-|G CCCGC----- -GC|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G NC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR116 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35463|g529973 BASE COUNT 125 a 106 c 156 g 90 t 3899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ......U-UU 421 -CUC-GA-UA C--------- ------GU-- U(-GAA--)- --CAC-G--C UAAUACG-NA 481 AU-ACG---- ---------- ---------- ---------- -----C-(-- --------UU 541 CG-------- -)-GG----- ---------- -----AAACC ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- G--CCAGG-- 661 ----AGAA-- GAG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AC-UG 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-A-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-N-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 U-UU-AAG|U UAG---GCGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUA A-GAC-UGGA A-GACUA-GA AAA-----CG G-AA-CAGGG UAG-U|G... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.irake3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum irakense str. KA3. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum irakense str. KA3. ORGANISM Azospirillum irakense. REFERENCE 1 AUTHORS Bally,R., Simonet,P., Haurat,J. and Normand,P. TITLE Characterization of Azospirillum irakense and Azospirillum lipoferum by direct sequencing of a PCR amplified 16S rDNA gene JOURNAL Symbiosis 13, 47-53 (1992) STANDARD No information COMMENTS isolate_name= KA3 BASE COUNT 57 a 49 c 72 g 43 t 4155 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)CA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UGU-G C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GUC---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----G..... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.iraken 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum irakense str. KBC1. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum irakense str. KBC1. ORGANISM Azospirillum irakense. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29583|g505518 isolate_name= KBC1 BASE COUNT 339 a 341 c 455 g 274 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UGU-G C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GUC---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( C......... ..CGGUA-A) A-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GACUA-GA GUA-----CC G-GA-GAGGU AGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CUUG--- -AC----CGA 1981 -CCC-A--(- GAGA-)-UGG -A-UCUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-ACG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.irake2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum irakense str. 103312. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum irakense str. 103312. ORGANISM Azospirillum irakense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79737|g897667 isolate_name= 103312 BASE COUNT 319 a 313 c 416 g 265 t 3063 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .GGC-CU--A ACAC-AUGCN A-GUN-NAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GN----- ---------- ---------- 241 --------NA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--A GGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGN- A-A--UGU-G C-CCUU---U -GGUU-C-NN 421 -AAU-AA-CG U--------- ------CU-- N(-NAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GUC---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UN-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- NAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCNA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NN --)GG-UUGU AAA--GCUC| UUUN-GC-AC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-CGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GN-G-AAC- 1321 -UNCG-CUUN A-GAC-UGUG A-GACUA-GA GUA-----CC G-GA-GAGGU AGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UUN -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-UUG AG-G------ -------CN- N-NAA--GC- GU-NNN-NN- 1561 GC-NAA-CA- -GG(NUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGU C--NG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-NGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CUUG--- -AC----CGA 1981 -UGC-N--(- GAGA-)-UGC -A-UCUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GUAGC-UGCA UG|G--UG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUC A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CG-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUNN--AAAA -GC-C-AUC- UNAGUUNGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-NGC- -UAGUA-AUC 3001 NC-GGA-(UN -AGC-AC)-N NCG-CGGUG- AAUAC-GUU- NNC---G-CC UNGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCU -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- GGCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. 5 AZ DSM 4835. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. 5 AZ DSM 4835. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 4835 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29637|g505521 isolate_name= 5 AZ BASE COUNT 322 a 326 c 435 g 263 t 3030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A --GC--U--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-U---A GUUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UGU-A U-CCUU---U -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GACUA-GA GUA-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CUUG--- -AC----CGA 1981 -UGC-A--(- GAGA-)-UGC -A-UCUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C -UUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCCC....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. 4 AZ DSM 4834. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. 4 AZ DSM 4834. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 4834 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29623|g505524 isolate_name= 4 AZ BASE COUNT 338 a 338 c 453 g 265 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-U---- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UGU-A C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CG U--------- ------UU-- G(-GAAA-)C -GAAC-G--C UAAUACC-GG 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --AC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 A-CC-AAG|U CCA---GCGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGGG U-GGCUA-GA GUA-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CUUG--- -AC----CGA 1981 -UGC-A--(- GAGA-)-UGC -A-UCUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C -UUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhc.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocista sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodocista sp. ORGANISM Rhodocista sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Kuraishi,H. and Yamasato,K. TITLE Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the proteobacteria alpha group JOURNAL J. Gen. Appl. Microbiol. 38, 541-551 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12703|g484300 NB: aka Rhodospirillum sp. BASE COUNT 302 a 311 c 436 g 252 t 3075 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---G -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-NNN---- ---------- ---------- ---------- ---C---(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GGCUU-GA GGU-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCGG-UGU 1741 CG--CA---- --NN-(UNA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CCUG--- -AC----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-NNNU--- UC-------- ----U----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU-A-G-C- GA-CCU-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhc.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocista sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodocista sp. ORGANISM Rhodocista sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Kuraishi,H. and Yamasato,K. TITLE Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the proteobacteria alpha group JOURNAL J. Gen. Appl. Microbiol. 38, 541-551 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12702|g484299 NB: aka Rhodospirillum sp. BASE COUNT 300 a 313 c 437 g 250 t 3076 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~CCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---G -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-NNN---- ---------- ---------- ---------- ---C---(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GGCUU-GA GGU-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCGG-UGU 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CCUG--- -AC----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-NNNU--- UC-------- ----U----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-AG-A A-CU-G-CCG --GU(-GA-C NA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGN-A-G-C- GA-CCN-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-NC)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhc.cente2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocista centenaria.. ACCESSION No information KEYWORDS No information. SOURCE Rhodocista centenaria. ORGANISM Rhodocista centenaria. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Former RDP Sids: R.centenum NB: former name Rhodospirillum centenum BASE COUNT 325 a 352 c 473 g 264 t 2962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---G -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GN 481 AU-GUN---- ---------- ---------- ---------- ---CCN-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AGC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GGCUU-GA GGU-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GA-UA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGNAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -GC----NGC 1981 -CCC-A--(- GAGA-)-UGG -G-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGN-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG GUC-AG-CG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhc.centen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocista centenaria. ACCESSION No information KEYWORDS No information. SOURCE Rhodocista centenaria. ORGANISM Rhodocista centenaria. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Kuraishi,H. and Yamasato,K. TITLE Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the proteobacteria alpha group JOURNAL J. Gen. Appl. Microbiol. 38, 541-551 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12701|g484298 Former RDP Sids: R.centenu2 IAM 14193 (T) = ATCC 43720 NB: former name "Rhodospirillum centenum" BASE COUNT 304 a 315 c 438 g 246 t 3073 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CN -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---G -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-NNN---- ---------- ---------- ---------- ---CC--(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AGC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-UC-AAG|U CAG---GCGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG A-GAC-UGUG A-GGCUU-GA GGU-----CC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -AC-GU-UGG -G--CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCGG-UGU 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -GC----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-GNNU--- NN-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-AG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCA-C(G 2881 -CGA)GUGG- ---------- AA-GCGAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY35 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY35.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY35. ORGANISM clone PLY35. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13158|g535411 BASE COUNT 104 a 92 c 139 g 80 t 3961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-G C-CCUG---A -GGUU-C-GG 421 -AAU-AA-CG A--------- ------UU-- G(-GAAA-)C -GAUC-G--C UAAUACC-GG 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UGGG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-UU- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-AC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.amazon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum amazonense str. Y-1 DSM 2787 (T). ACCESSION No information KEYWORDS No information. SOURCE Azospirillum amazonense str. Y-1 DSM 2787 (T). ORGANISM Azospirillum amazonense. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 2787 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29616|g505515 DSM 2787 (T) = ATCC 35119 isolate_name= Y-1 BASE COUNT 322 a 320 c 452 g 275 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-G C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------C-C UG-A--U-GG ---UUG-(-- --------UG 541 GA-------- -)--GA---C UG-UC----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UG- 1261 U-UC-AAG|U CAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-CUUG A-GAC-UGAG C-GGCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AC-GU-UGG -GG-UUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AAC -UUCGG-UGU 1741 CG--CA---- --S--(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACU. .......... .......... .........G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---ACUG--- -AC----CGG 1981 -UGC-G--(- GAGA-)-CGC -A-C-UUU-- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCU-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .........U -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.amazo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum amazonense str. Y2. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum amazonense str. Y2. ORGANISM Azospirillum amazonense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79742|g897657 isolate_name= Y2 BASE COUNT 312 a 313 c 439 g 272 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCN A-GUC-GAAC 121 N--NA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U NAGU---AAC -GC-GUGGN- A-A--CCU-G C-CCUU---U -GGUU-C-GN 421 -AAU-AA-CU C--------- ------NN-- N(-GNAA-)C -UGGA-G--C UAAUACC-GG 481 AU-NAG---- ---------- -------C-C UG-A--U-GG ---UUG-(-- --------UG 541 GA-------- -)--GA---C UG-UC----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UNNCC-N A|-GCC-GN- CGA------- -----UN-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- NNG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UNCG)--N GNG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UN-NG --)GG-UUGU AAA--GCUC| UUUN-GC-AC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-U-GA G-AA--NAAN ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UG- 1261 U-UC-AAG|U CAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UNCG-CUUN A-GAC-UGAG C-GGCUN-GA GUU-----NG G-GA-GAGGU GAG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-UUN AG-G------ -------NN- N-NNA--GC- GU-NGG-GA- 1561 GN-NAA-CA- -GG(NUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NU--N 1621 AAC-G-NUGA G--UG-CU-- -------A|G -AC-GU-UGG -GG-UUN--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AAC -UUCGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---ACUG--- -AC----CGG 1981 -UGC-N--(- NAGA-)-CGC -A-U-UAU-- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGG-UN-AGA |---C|A--G 2161 GU-NN-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-N |GU-C(-GNN A)-GAUGU-A 2221 GG-G-(UUAA -GU)CCCAGC AA-------- CGAG-C--GC AACCC-CC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCU-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UNAGUUNGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- NNC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CNA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- GGCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.amazo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum amazonense str. Y-1 DSM 2787 (T). ACCESSION No information KEYWORDS No information. SOURCE Azospirillum amazonense str. Y-1 DSM 2787 (T). ORGANISM Azospirillum amazonense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 2787 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79735|g897659 DSM 2787 (T) = ATCC 35119 isolate_name= Y-1 NB: 25 N's after 681n do not fit pattern BASE COUNT 311 a 329 c 460 g 279 t 2997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-G C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------C-C UG-A--U-GG ---UUG-(-- --------UG 541 GA-------- -)--GA---C UG-UC----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GUGG 901 GGU-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCUC| UUUN-GC-AC 1021 --GU-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-U-GA G-GA--GGAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CUG 1261 U-UC-AAG|U CAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UCGG-CUUG A-GAC-UGAG C-GGCUU-GA GUU-----UC G-GA-GAGGU GAG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUU -GG-AGAU-A UU-GGGNAG- GAGA-GCGG- 1441 -U-G-GN(-G GA-G)GGGG- -NUNACUG-- ---------- -----GAGNG AUAC...... 1501 .CC--CA-UA CUNACG-CUN AG-G------ -------C-- N-NAAA-GN- ----GG-CA- 1561 GC-NAA-CN- -GG(NUUA-G -U-C)-CCU- ----GGU--G UC----CNC- G-CC-GU--G 1621 AAC-G-AUNA G--UG-CU-- -------A|G -AC-GU-UGG -GG-UUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AAC -UUCG--UGU 1741 CG--CA---- --GC-(UAA- ---C)G-C-- UNAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UN-NNAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 CGA--CA-AG CG-UNG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---ACUG--- -AC----CGG 1981 -UGC-G--(- GAGA-)-CGC -A---UUU-- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| NGG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-CCU-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- GGCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-ACG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A22L 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91445 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 89 a 69 c 111 g 75 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAA |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGM|G UAAA-GNN-- --G-UAG-GC -G|-GU-UU- 1261 A-AC-AAG|U UGG---GUGU N-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-CCCA A-GAC-UGUU U-UACUU-GA AUU-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AAUA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-CA UUGACG-CUG AG-G------ -------CG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC A--UG-CU-- -------A|G -AC-GU-UGG -AA-AC---- ---------- 1681 -(-CU-CA)G ---------- ---------- ---------- -------GUU -UCUU..... 1741 .......... .....(.AA- ---C)G-CU- CUAA-GCAUG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CA.)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC77 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68470 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 236 a 257 c 381 g 204 t 3298 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCA..... .......... .......... .....CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUGGG-GG (--UU----- ---------- ---------- 241 --------CG -)CU-CUCAA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AGC -GC-GUGGG- A-A--CCU-G C-CCUG---U -UGUG-G-GG 421 -GAU-AA-CC G--------- ------AG-- G(-GAAA-)C -UUCG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ------C-CC ---GGG-(-- --------GA 541 AA-------- -)-CUC---G GG-------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUGA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----CAAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UU- UGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... ..G-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-NACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GG- 1261 A-CC-GAG|U CGA---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AGG- 1321 -UGCG-CUGG A-GAC-UGGC C-CGCUG-GA GUU-----CG G-GA-GAGGA GCG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCUCUG-- ---------- ---------- ---------G 1501 ACC--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-NN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------A|G -AC-GU-UGG -GG-AG---- ---------- 1681 -(-CC-UG)- ---------- ---------- ---------- -------CUC -UUCGG-UGU 1741 CG--CC---- --GC-(AAA- ---C)G-CU- UUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CCGG-U- UGG----GGG 1981 -CCG-A--(- GAGA-)-UCG -G-UUCUU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CC--UGC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---GC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-GCA-GA-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.halprf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum halopraeferens str. AU4 DSM 3675. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum halopraeferens str. AU4 DSM 3675. ORGANISM Azospirillum halopraeferens. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 3675 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29618|g505517 isolate_name= AU4 BASE COUNT 314 a 324 c 445 g 253 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AUG---G-|G CCCGC----- -GC|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-CAG|U CAG---GAGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -GGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CC-- -------A|G -AC-GC-UGG -GA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -UUCGG-UGU 1741 CG--UC---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCGU-C- GCG----GNN 1981 -NGG-A--(- GAGA-)-UCC -C-ACUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--GCC- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-G A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAGUG GGA-A-G-C- GA-CGU-C(G 2881 -CGA)GGCG- ---------- AA-GCAAA-U CUCC--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-A.).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 ..UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UNGCC-GUAG G(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.halpr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum halopraeferens str. Au4. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum halopraeferens str. Au4. ORGANISM Azospirillum halopraeferens. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79731|g897666 isolate_name= Au4 BASE COUNT 302 a 312 c 423 g 258 t 3081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UNCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCNC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- -----AAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AUG---G-|G CCCGC----- -GC|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUNUCGC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-CAG|U CAG---GAGU G-AAA-GC-C C--GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -GGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(GU UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GG(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACN--CN-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UN-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NU--A 1621 AAC-G-AUGA G--UG-CC-- -------A|G -AC-GC-UGG -GA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -UUCGGAUGU 1741 CG--UC---- --GC-(UAA- ---C)G-CAA UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAC CG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-U-G-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCGU-C- GCG----GGU 1981 -GGG-A--(- GAGA-)-UCC -C-ACUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--GCC- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-G A-CC-G-NCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C NUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAGUG GGA-A-G-C- GA-CGU-C(G 2881 -CGA)GGC-- ---------- AA-G-AAA-U CUCC--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)AGGGUGCA -UGAAGU-UG -G-AU-CGC- -UAGUA-AUC 3001 GG-ANA-(UG -AAC-AU)-G CCG-CGGUG- AAUNUGUUC- CGG-GGC-UC GUUGUA---C 3061 ACACCCCGC- A--------- --NUA-UGAG A--GU-UGG- UC-UU..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Sp7 DSM 1690. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Sp7 DSM 1690. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 1690 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79739|g897663 DSM 1690 = CECT 590 = ATCC 29145 (T) = NCIMB 11860 isolate_name= Sp7 isolate_name= Sp 7 BASE COUNT 324 a 329 c 465 g 264 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-N -UGC-CU--A ACAC-AUGCN A-GUC-NNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---U -GGUU-C-GN 421 -GAU-AA-CG U--------- ------CU-- N(-NAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- -------U-C C-----N-NC ---AGA-(-- --------GA 541 GA-------- -)-UGU---G GC-C-----G GA-GUAAGAG AGAUGU---- UG-GCG---- 601 --(------- --GGGUAAG- ---)------ -----UGU-| ----GC--G- G--CCG---- 661 ----AGAG-- AGG---U-|G AGGUA----- -GU|---UGG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC--A- CGA------- -----UC-GG 781 U-AG-C-UA| -A-UCU--(G -AGA)-GGAU -GAUGA-U-- NAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU N-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCNC| UNNC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGCUN-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-NUN AG-G------ -------CG- N-NNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GN-UGG -GG-UG---- ---------- 1681 -(-NA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-NGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ANC----GGC 1981 -UCG-N--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UNAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Cdr. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Cdr. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79732|g897662 isolate_name= Cdr BASE COUNT 324 a 329 c 465 g 264 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-N -UGC-CU--A ACAC-AUGCN A-GUC-NNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---U -GGUU-C-GN 421 -GAU-AA-CG U--------- ------CU-- N(-NAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- -------U-C C-----N-NC ---AGA-(-- --------GA 541 GA-------- -)-UGU---G GC-C-----G GA-GUAAGAG AGAUGU---- UG-GCG---- 601 --(------- --GGGUAAG- ---)------ -----UGU-| ----GC--G- G--CCG---- 661 ----AGAG-- AGG---U-|G AGGUA----- -GU|---UGG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC--A- CGA------- -----UC-GG 781 U-AG-C-UA| -A-UCU--(G -AGA)-GGAU -GAUGA-U-- NAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU N-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCNC| UNNC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGCUN-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-NUN AG-G------ -------CG- N-NNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GN-UGG -GG-UG---- ---------- 1681 -(-NA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-NGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ANC----GGC 1981 -UCG-N--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UNAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. SpF94. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. SpF94. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79740|g897660 isolate_name= SpF94 BASE COUNT 324 a 329 c 465 g 264 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-N -UGC-CU--A ACAC-AUGCN A-GUC-NNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---U -GGUU-C-GN 421 -GAU-AA-CG U--------- ------CU-- N(-NAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- -------U-C C-----N-NC ---AGA-(-- --------GA 541 GA-------- -)-UGU---G GC-C-----G GA-GUAAGAG AGAUGU---- UG-GCG---- 601 --(------- --GGGUAAG- ---)------ -----UGU-| ----GC--G- G--CCG---- 661 ----AGAG-- AGG---U-|G AGGUA----- -GU|---UGG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC--A- CGA------- -----UC-GG 781 U-AG-C-UA| -A-UCU--(G -AGA)-GGAU -GAUGA-U-- NAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU N-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCNC| UNNC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGCUN-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-NUN AG-G------ -------CG- N-NNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GN-UGG -GG-UG---- ---------- 1681 -(-NA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-NGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ANC----GGC 1981 -UCG-N--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UNAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Sp7 NCIMB 11860. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Sp7 NCIMB 11860. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29617|g505516 NCIMB 11860 = DSM 1690 = CECT 590 = ATCC 29145 (T) isolate_name= Sp7 isolate_name= Sp 7 BASE COUNT 341 a 361 c 471 g 275 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNSAACCUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- -------U-C C-----C-CC ---AGA-(-- --------GA 541 GA-------- -)-UUU---G GN-NN----N NA--GAAA-- ---G------ ---------- 601 --(------- ---UWUA--- ---)------ ---------| --------C- G--CCR---- 661 ----WGAG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- ---C-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ACC----GGC 1981 -UCG-A--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brazil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Sp7 ATCC 29145 (T). ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Sp7 ATCC 29145 (T). ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29145 (T) ATCC 29145 (T) = DSM 1690 = CECT 590 = NCIMB 11860 isolate_name= Sp7 isolate_name= Sp 7 NB: addition of ~13 bases ~180 in half of cistrons BASE COUNT 338 a 360 c 459 g 276 t 2943 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUGAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUN-GCGC- 361 -A-CN-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- --------UC ---CCC-(-- --------NA 541 GA-------- -)-GCG---G R--------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCN---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGNUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AAGCNA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ACC----GGC 1981 -UCG-A--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GUG 3121 G-UGN-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG GUC-AG-CG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Sp T60 DSM 2298. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Sp T60 DSM 2298. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 2298 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79734|g897661 isolate_name= Sp T60 BASE COUNT 315 a 332 c 432 g 262 t 3035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)NC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUA---U -GGUU-C-GN 421 -GAU-AA-CG U--------- ------CU-- N(-NAAA-)C -GGAC-G--C UAACACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 C--------- -)-GGG---- ---------- ----NNAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--GCA---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----NC G--AUUA-G- GUA-G---UU 721 GG-UU-GG-( GU-AAU-GG) -C-GCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(ACCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC G-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUU -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CN- --GNAA-GG- CU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UA|--- ---------U ---CCAC-U- ACC----GGC 1981 -UCN-N--(- GAGA-)-UCG -G-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-NA-ACA |---C|N--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GC--G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UNNG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp1291 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. 129/1. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. 129/1. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79726|g897674 isolate_name= 129/1 BASE COUNT 320 a 333 c 436 g 255 t 3032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCN A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGN- A-A--CCU-G C-CUUA---U -GGUU-C-NN 421 -GAU-AA-CG U--------- ------CU-- N(-NNAA-)C -GGAC-G--C UAACACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- -----NAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCA---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUN| UNNN-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-N)A-CCU -GG-G-AAC- 1321 -UGCA-UNNG A-UAC-UGUC G-GGCUU-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-UUG AG-G------ -------CN- N-NAA--GC- GU-NGN-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)---GCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAU-U- GCC----GGU 1981 -CNG-A--(- GAGA-)-UCG -G-ACCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----NG---| AUG-NA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-AUG A)-GAUGU-A 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UNAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-NGC- -UAGUA-AUC 3001 NC-GGA-(UN -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp1292 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. 129/2. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. 129/2. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79727|g897675 isolate_name= 129/2 BASE COUNT 320 a 333 c 436 g 255 t 3032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCN A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGN- A-A--CCU-G C-CUUA---U -GGUU-C-NN 421 -GAU-AA-CG U--------- ------CU-- N(-NNAA-)C -GGAC-G--C UAACACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- -----NAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCA---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUN| UNNN-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-N)A-CCU -GG-G-AAC- 1321 -UGCA-UNNG A-UAC-UGUC G-GGCUU-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UNN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-UUG AG-G------ -------CN- N-NAA--GC- GU-NGN-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)---GCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAU-U- GCC----GGU 1981 -CNG-A--(- GAGA-)-UCG -G-ACCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----NG---| AUG-NA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-AUG A)-GAUGU-A 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UNAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-NGC- -UAGUA-AUC 3001 NC-GGA-(UN -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.brasi7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum brasilense str. Sp 81 DSM 1859. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum brasilense str. Sp 81 DSM 1859. ORGANISM Azospirillum brasilense. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 1859 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79733|g897658 isolate_name= Sp 81 BASE COUNT 318 a 339 c 445 g 260 t 3014 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---U -GGUU-C-GG 421 -GAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GG----- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUCC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-CAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCNG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-NUG AG-G------ -------CN- N-NAA--GU- -A-GGG-NA- 1561 GCNAAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGGUAG UC----CAC- G-CC-NU--A 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GC-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAU- C|N|N---U- G-GNNAGUAC 1801 GGC-C---(G CAA)---G-G UN-AAAACUC -AAA-GNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CN -(AAGCAA-C G)--CGNAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- ACC----GGC 1981 -UNN-N--(- GAGA-)-UCG -A-GCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUN-GA-ACA |---C|N--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CAA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CCG--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-C-A G-CC-AA-CC A-CGGU-CAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. F. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. F. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79736|g897672 isolate_name= F BASE COUNT 315 a 332 c 434 g 259 t 3036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GGAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCN A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGN- A-A--CCU-G C-CUUA---U -GGUU-C-NN 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CN-------- -)-GGN---- ---------- -----NAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCA---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACNGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-NCC -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCUN| UNNC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-CAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-N)A-CCU -GG-G-AAU- 1321 -AGCU-UNNN A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UN-NGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-UUN AG-G------ -------C-- C-NNAA-GC- GU-NGN-NA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NU--N 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GU-CNN -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-NNU -GUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAU-U- NUG----GGC 1981 -UUC-A--(- GAGA-)-UGN -G-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UNAGUUNGGA 2941 U-CGUACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UN-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- GGCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AA-CC A-CGGU-AAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp1375 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. 137/5. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. 137/5. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79728|g897673 isolate_name= 137/5 BASE COUNT 316 a 319 c 421 g 268 t 3052 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---U -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 C--------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCA---- 661 ----UGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) CC-GCACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUCC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -AGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACGCUUA GCUG------ ------AGGC C-GAAA---- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- -UAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UNG-AGC A-U-GU-GGU -UUAAU--CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAU-U- UUG----GGC 1981 -UUG-A--(- GAGA-)-UCA -G-GUCCU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-AUN A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 GUG-UCGCAU AAUUA----- ---------- ---------- ---U(---UC ---GAG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 GACA-CU-C- U-GGU-GN-A C-CN-C-CUG --GU(-GA-C AA)-GCC-A- GAAGG-A-AC 2761 G-GC-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-U CUUAU-G-UG -UU--GCGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGU-C(G 2881 -AGA)GAUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UGAGUUCAGA 2941 G-CGUACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGC-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CU-UU..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. PA1. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. PA1. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79738|g897671 isolate_name= PA1 BASE COUNT 315 a 330 c 419 g 261 t 3051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -NNAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGN- A-A--CCU-G C-CUUU---U -GGUU-C-NN 421 -AAU-AA-CG U--------- ------CU-- N(-NAAA-)C -NNAC-G--C UAACACC-GN 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CN-------- -)-NNN---- ---------- ----NAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----NGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(N -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUNG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GNN-AAUAUU G-GACAAU-- GG-GN-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UNUN-GN-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-CAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -AGCU-UNNG A-UAC-UGGC A-GGCUU-GA GUU-----NN G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UUN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-UUG AG-G------ -------C-- N-NNAA-GC- GU-NGG-NA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NU--N 1621 AAC-G-AUNA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)-----G UU-NAAACUC -AAA-GNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -NUAAUU-CN -(NAGCNA-C G)--CN-NGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAN-U- NUN----GGN 1981 -UCG-A--(- GAGA-)-UCG NGCUUCCU-- UC-------- ---NG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUN-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-NUN A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUNGGA 2941 U-CGUACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUACACA--- --CCA-UGGG A--GU-UGG- CU-UN-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- GGCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-C-A G-CC-GG-CC A-CGGU-AAG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. VIP Sp RG 20a ATCC 29708. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. VIP Sp RG 20a ATCC 29708. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29708 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79729|g897669 isolate_name= VIP Sp RG 20a BASE COUNT 304 a 308 c 393 g 261 t 3110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A ACAC-AUGCA A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GNGC- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GN 421 -AAU-AA-CN U--------- ------UU-- N(-NAAA-)C -GAAC-G--C UAACACC-NN 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGN---- ---------- -----AAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UN-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(N -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCUC| UUN--GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -AGCU-UNUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UUN -GU-AGAU-A UU-GGGNNG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------C-- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)-----G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAU-U- AUG----GGC 1981 -UCG-A--(- GAGA-)-UCN -G-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CN N-)------- CC-------- ----NG---| GUN-NA-ACA |---C|A--G 2161 GU-GC-UNCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GNC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(--A-C AA)-GCC-G- --A-G-A-AG 2761 G-CG-GG--A U--ACG--UC CA-AGUC-CU CAU-G-GC-U CUUAU-G-GG -UU--GCGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CCCN--AAAA -GC-C-GUC- UNAGUUNNGA 2941 U-CGCACUC- (UNCAAC-U- N)-GAGUNNG -NGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -NGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NACCN-CCC- GUC-ACA--- --CCA-UGNG A--GU-UGG- UU-UN..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. BR17. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. BR17. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Bally,R., Simonet,P., Haurat,J. and Normand,P. TITLE Characterization of Azospirillum irakense and Azospirillum lipoferum by direct sequencing of a PCR amplified 16S rDNA gene JOURNAL Symbiosis 13, 47-53 (1992) STANDARD No information COMMENTS isolate_name= BR17 NB: strain BR17 equivalent to ATCC 29709 BASE COUNT 52 a 51 c 74 g 44 t 4155 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----G..... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. VPI Sp RG6xx ATCC 29731. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. VPI Sp RG6xx ATCC 29731. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29731, VPI Sp RG6xx ATCC 29731 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79730|g897670 isolate_name= VPI Sp RG6xx BASE COUNT 304 a 307 c 410 g 263 t 3092 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GNGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GN 421 -AAU-AA-CN U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 U--------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUCA--- ---)------ ---------| --------C- G--CCN---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UN-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(N -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCUC| UUN--GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -AGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGNAA)-UUN -GG-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)NCGG- -CCAUCUN-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------C-- N-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)-----G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- AUG----GGC 1981 -UUC-A--(- GAGA-)-UGA -G-GUCUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CCCN--AAAA -GC-C-GUC- UNAGUUNNGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UNAAGU-UN -NAAU-NGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AC)-N CCG-CGGUG- NAUAC-GUU- NNC-GGG-CC UUGUA----C 3061 ANACCNCCC- GUC-ACA--- --CCA-UNNG A--GU-UGG- UU-UN..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. W03. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. W03. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Fancelli,S. TITLE Phylogeny of the genus Azospirillum based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 129, 195-200 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79741|g897668 isolate_name= W03 BASE COUNT 310 a 319 c 430 g 259 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...U-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GNGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- -------U-C C--------C ---CCA-(-- ------GAGN 541 AA-UG----- -)-UGG---G C--------G GA--GANA-- ---G------ ---------- 601 --(------- ---NNNN--- ---)------ ---------| --------C- C--CCG---- 661 ----AGAG-- A-G---G-|U UACGCGGCUC AGU|----CG G--AUUAAGG GUUAG---NN 721 GG-UN-AG-( GA-UAACGG) CC-UCUCC-A A|-GGCCUG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UN-NG --)GG-UUGU AAA--GCUC| UUN--GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -AGCU-UUUG A-UAC-UGGC A-GGCUU-GA GUU-----NC G-GA-GAGGA UGG-U|GGAA 1381 UU-NNCAGU- GUA-GAG(-G UGAAA)-UUN -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------C-- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G GCA)-----G UU-AAAACUC --AA-GGAAU UG-ACGGG-G -G-C-CC--A 1861 C-A--C--AG -GCUGC-AGA C-U-GU-GG- -UUAAUU-CG -(AAGCAA-C G)--CG-AGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- AUG----GGC 1981 -GUC-A--(- GAGA-)-UGG -C-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GNG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C YUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-CGUACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipof2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. VPI Sp 59b NCIMB 11861 (T). ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. VPI Sp 59b NCIMB 11861 (T). ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: VPI Sp 59b NCIMB 11861 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29619|g505520 NCIMB 11861 (T) = ATCC 29707 isolate_name= VPI Sp 59b BASE COUNT 333 a 346 c 476 g 277 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGGCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -AGCU-UUUG A-UAC-UGGC G-GGCUU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --CG-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- AUG----GUC 1981 GCUC-A--(- GAGA-)-UGG -C-GUCCU-- UC-------- ---AGG---- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-AGA |---G|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.lipofe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum lipoferum str. VPI Sp 59b ATCC 29707. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum lipoferum str. VPI Sp 59b ATCC 29707. ORGANISM Azospirillum lipoferum. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29707, VPI Sp 59b ATCC 29707 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59061 ATCC 29707 = NCIMB 11861 (T) isolate_name= VPI Sp 59b BASE COUNT 334 a 344 c 462 g 274 t 2962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUU-UC (--UU----- ---------- ---------- 241 --------CN -)NG-GNNC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAACACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UN-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUNA--- ---)------ ---------| --------C- G--CCG---- 661 ----AGAG-- AGG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GCC-UN- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACN)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-AC 1021 --GC-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-U-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CC- 1261 G-UU-UAG|U CAG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -AGCU-UUUG A-UAC-UGGC G-GGCNU-GA GUU-----CC G-GA-GAGGA UGG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CNAUCUG-- ---------- ---------- ---------G 1501 ACG--GA-CA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -AC-GU-CGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -UUCGG-UGU 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---CCAC-U- AUG----GUC 1981 -GYC-A--(- GAGA-)-UGG -C-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GG-A A-CC-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 G-UGN-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AA-CC A-CGGU-AAG GUC-AG-CG- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.3 ENVIRONMENTAL_CLONE_OS_O. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.3 ENVIRONMENTAL_CLONE_OS_O. ORGANISM 2.14.1.1.3 ENVIRONMENTAL_CLONE_OS_O. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_O 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04706 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT: general alpha seq is ~200 nucs.; thus, difficult to phylogenetically place BASE COUNT 46 a 54 c 61 g 42 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .....GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-SS-C CUUAU-G-GS -SU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- AA-GCC-A(G 2881 -CGA)UGGU- ---------- GC-GCCAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.4 RPL.GLOBIFORMIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.4 RPL.GLOBIFORMIS_GROUP. ORGANISM 2.14.1.1.4 RPL.GLOBIFORMIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rsc.thsulf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseococcus thiosulfatophilus str. RB-3 DSM 8511 (T). ACCESSION No information KEYWORDS No information. SOURCE Roseococcus thiosulfatophilus str. RB-3 DSM 8511 (T). ORGANISM Roseococcus thiosulfatophilus. REFERENCE 1 AUTHORS Yurkov,V., Stackebrandt,E., Holmes,A., Fuerst,J.A., Hugenholtz,P., Golecki,J., Gad'on,N., Gorlenko,V.M., Kompantseva,E.I. and Drews,G. TITLE Phylogenetic positions of novel aerobic, bacteriochlorophyll alpha-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 427-434 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8511 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72908 legacy_attribute= biovar:Yurkov strain Drews isolate_name= RB-3 BASE COUNT 337 a 336 c 472 g 270 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGA-A -UGC-UN--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--CGU-G U-CCGA---G -GGUG-G-GG 421 -GAU-AA-CG C--------- ------UG-- G(-GAAA-)C -UGGC-G--C UAAUACC-GC 481 AU-AUC---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----UG--C- G--CCC---- 661 ----AUGG-- AGC---G-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UUCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UUUC-GA-CA 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-AC- 1261 A-CA-CAG|U CAG---GCGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-GAC- 1321 -UGCG-CUUG A-UAC-AUGU G-AGCUA-GA GGA-----UG G-AA-GAGGC UCG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGAACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GA-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CU-GU--A 1621 AAC-G-AUGU U--CG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-NU-A-)- ---------- ---------- -N-------- -------UCA -CUCAG-UGU 1741 CG--UA---- --AC-(UAA- ---C)G-CG- AUAA-NCGCN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---GUCG--- -GA----CAU 1981 -CGC-A--(- GAGA-)-UGC -G-UUGGUG- UU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CGG-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-A G-CU-C-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- CA-GGU-C(G 2881 -CGA)GNCC- ---------- GA-GCGGA-U CCCA--AAAA -GC-C-GUC- UCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCU -UAA-G-CCG 3121 A-UGU-G-GC -AU-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-UC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---UAGUC- GNAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD47 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26234|g498437 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 69 c 84 g 61 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-A-G-C- UA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-ACCGA-U CCCU--AAAA -GC-C-GUC- UCAGUUUAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD52 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26239|g498443 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 69 c 85 g 61 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ....C-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-A-G-C- UA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCCGA-U CCCU--AAAA -GC-C-GUC- UCAGUUUAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-AC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC74 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68472 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 235 a 255 c 381 g 206 t 3299 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CGG-GU (--UU----- ---------- ---------- 241 --------CG -)GC-CCG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 GG-------- -)-GGU---- ---------- ----CAAA-- ---GGUC--- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ---GAC--C- G--CCU---- 661 ----GUGG-- AGG---A-|C GGUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUCC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UG- 1261 G-CA-UAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCG-CUUG A-UAC-AUGU G-GUCUU-GA GUG-----CG G-AA-GAGGG UCG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UCC--GC-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-NN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--CG-CU-- -------G|G -AU-GU-UGG -CC-GAC--- ---------- 1681 -(-CU-A-)- ---------- ---------- -G-------- -------UCG -GUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---AGCCG-- -UC----GCG 1981 -UCG-A--(- GAGA-)-UCG -G-CGUU--- C--------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- --------C| GGC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---GU ---U..--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC106 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68471 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 198 a 189 c 293 g 166 t 3530 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- U-A--UCU-A U-CCUC---G -GGUG-G-GG 421 -GAC-AA-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UG 541 AG-------- -)-GUC---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GGGG-- AGG---A-|G CCUNN----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UC- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GG-GU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAUUGA -CU-GGGC|G UAAA-GNNC- GCG-UAG-GC -G|-GU-UU- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GGC- 1321 -UGCG-UUUG A-UAC-GUGU A-GGCUU-GA GUU-----CG G-AA-GAGGG UCG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UCC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-NN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--CG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 NNC-C---(G CAA)---G-G UU-GAAACUC -AAA-G.... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rpl.globif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopila globiformis str. 7950 DSM 161. ACCESSION No information KEYWORDS No information. SOURCE Rhodopila globiformis str. 7950 DSM 161. ORGANISM Rhodopila globiformis. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 161 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59066 DSM 161 = ATCC 35887 (T) isolate_name= 7950 BASE COUNT 322 a 365 c 502 g 276 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- C-A--UCU-A U-CCCU---G -GGUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GGCGCC- ----AGG--- 601 --(------- ---GCAA--- ---)------ ----CCU--| -GGNNU--C- G--CCU---- 661 ----GGNN-- AGG---A-|G CCUGC----- -GU|----AC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -N|-GU-UU- 1261 G-UA-CAG|U CAG---GUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCU -GG-G-NGC- 1321 -UGCA-CUUG A-UAC-GUAU G-GACUU-GA GUG-----GG G-NA-GAGGG UNG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -NGACCUG-- ---------- ---------- ---------G 1501 UCC--UU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CG-CU-- -------G|G -AU-GU-UGN -GC-GGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CCG -CACAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-NG- CUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---GCAAG-- -UC----GCG 1981 -UCC-G--(- GAGA-)-CGG -G-CGUU--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G--C| UUG-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GN-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- CA-GGC-C(G 2881 -CGA)GGCN- ---------- GU-GCUGA-U CCCGA-AAAG -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-GC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CG-ACCU -UAA-G-CCG 3121 G-UGC-G-CC -AA-CCCA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GGGGGG-C-A G-NC-GA-CC A-CGGU-CGG GUU-AG-CG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gb.cerinus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gluconobacter cerinus. ACCESSION No information KEYWORDS No information. SOURCE Gluconobacter cerinus. ORGANISM Gluconobacter cerinus. REFERENCE 1 AUTHORS Sievers,M., Gaberthuel,C., Boesch,C., Ludwig,W. and Teuber,M . TITLE Phylogenetic position of Gluconobacter species as a coherent cluster separated from all Acetobacter species on the basis of 16S ribosomal RNA sequences JOURNAL FEMS Microbiol. Lett. 126, 123-126 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80775|g683559 IFO 3267 = LMG 1368 BASE COUNT 354 a 338 c 484 g 300 t 2900 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAC-AA-CU U--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-UG-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-GAC-GCAU A-GACUA-GA GGU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUA -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UUG C-A-UG|--- ---------G ---GGAGG-- -AC----GUA 1981 -CUC-A--(- GAGA-)-UGG -G-UAUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA--C| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UU ---CAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-A-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGA-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gb.asaii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gluconobacter asaii. ACCESSION No information KEYWORDS No information. SOURCE Gluconobacter asaii. ORGANISM Gluconobacter asaii. REFERENCE 1 AUTHORS Sievers,M., Gaberthuel,C., Boesch,C., Ludwig,W.. and Teuber,M . TITLE Phylogenetic position of Gluconobacter species as a coherent cluster separated from all Acetobacter species on the basis of 16S ribosomal RNA sequences JOURNAL FEMS Microbiol. Lett. 126, 123-126 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80165|g683558 IFO 3276 = LMG 1390 BASE COUNT 350 a 334 c 492 g 300 t 2900 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GUAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUAG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GG-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-CAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GGG-UAG-GC -G|-GG-UU- 1261 A-UG-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-G(- UU-A)A-CCU -GG-G-GAC- 1321 -UGGA-UUUG A-GAC-GGAU A-GACUA-GA GGU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUA -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGG A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UUG C-A-UG|--- ---------G ---GGAGG-- -AC----GUA 1981 -CUC-A--(- GAGA-)-UGG -G-UAUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA--C| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G G-U---CG-U |GU-C(-GUG A)-GACGU-U 2221 GG-G-(UUGA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UU ---CAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-CAU-G(G 2881 -CGA)CAUG- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGCG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGA-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gb.frateur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gluconobacter frateurii. ACCESSION No information KEYWORDS No information. SOURCE Gluconobacter frateurii. ORGANISM Gluconobacter frateurii. REFERENCE 1 AUTHORS Sievers,M., Gaberthuel,C., Boesch,C., Ludwig,W. and Teuber,M . TITLE Phylogenetic position of Gluconobacter species as a coherent cluster separated from all Acetobacter species on the basis of 16S ribosomal RNA sequences JOURNAL FEMS Microbiol. Lett. 126, 123-126 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82290|g683560 IFO 3264 = LMG 1365 BASE COUNT 351 a 339 c 483 g 303 t 2900 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-UG-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-GAC-GCAU U-GACUA-GA GUU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUA -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG C-A-UG|--- ---------G ---GGAGG-- -AC----GUA 1981 -CUC-A--(- GAGA-)-UGG -G-UAUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C C-)------- ---------- ----GA--C| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--AC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UU ---CAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-UGU-G(G 2881 -UGA)CACA- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGA-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gb.oxydans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gluconobacter oxydans. ACCESSION No information KEYWORDS No information. SOURCE Gluconobacter oxydans. ORGANISM Gluconobacter oxydans. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73820|g510835 DSM 3503 = ATCC 19357 BASE COUNT 350 a 341 c 485 g 303 t 2897 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GU (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAC---G -GGUG-G-GG 421 -GAC-AA-CU U--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 U-UA-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-GUGA C-GACUA-GA GUU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GA-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUU -CUCAG-UGU 1741 CG--AA---- --CG-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG C-A-UG|--- ---------G ---GGAGG-- -AC----CGG 1981 -UUC-A--(- GAGA-)-UGG -A-CCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA--C| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UU ---CAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-CAU-G(G 2881 -UGA)CAUG- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGA-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.eurpoaeu 4376 bp RNA RNA 04-DEC-1998 DEFINITION Acetobacter europaeus.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION AJ0126 8 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Acetobacter europaeus. ORGANISM Acetobacter europaeus. REFERENCE 1 (bases 1 to 1481) AUTHORS Trcek,J., Raspor,P. and Teuber,M. TITLE 16S rDNA of Acetobacter intermedius, ZIM B025 JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1481) AUTHORS Trcek,J. TITLE Direct Submission JOURNAL Submitted (09-NOV-1998) Trcek J., Biotechnical faculty, Food Science and Technology Dep., University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, SLOVENIA STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AJ012698 BASE COUNT 346 a 341 c 491 g 298 t 2900 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAGUU(U-G A)U-CMU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--S ACAC-AUGCA A-UUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UW--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|R CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CN-CAG|U CAG---AUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGG C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -UC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-A(G 2881 -CGA)UACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUG-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.interm.1 4376 bp RNA RNA 04-DEC-1998 DEFINITION Acetobacter intermedius.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION AJ0126 7 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Acetobacter intermedius. ORGANISM Acetobacter intermedius. REFERENCE 1 (bases 1 to 1480) AUTHORS Trcek,J., Raspor,P. and Teuber,M. TITLE 16S rDNA of Acetobacter intermedius, ZIM B025 JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1480) AUTHORS Trcek,J. TITLE Direct Submission JOURNAL Submitted (09-NOV-1998) Trcek J., Biotechnical faculty, Food Science and Technology Dep., University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, SLOVENIA STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AJ012697 BASE COUNT 345 a 342 c 490 g 296 t 2903 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAGUU(U-G A)U-CNU|-G 61 GCUCAG-AGC -GAAC-GN-- UGGC-GGC-A -UGC--U--N ANAC-AUGCG A-UUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAC---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GANA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAU-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGG C-GAcUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -CC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUNA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.interm.2 4376 bp RNA RNA 04-DEC-1998 DEFINITION Acetobacter intermedius.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION AJ0126 9 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Acetobacter intermedius. ORGANISM Acetobacter intermedius. REFERENCE 1 (bases 1 to 1481) AUTHORS Trcek,J., Raspor,P. and Teuber,M. TITLE 16S rDNA of Acetobacter intermedius, ZIM B025 JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1481) AUTHORS Trcek,J. TITLE Direct Submission JOURNAL Submitted (09-NOV-1998) Trcek J., Biotechnical faculty, Food Science and Technology Dep., University of Ljubljana, Jamnikarjeva 101, SI-1000 Ljubljana, SLOVENIA STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AJ012699 BASE COUNT 348 a 340 c 490 g 296 t 2902 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAGUU(U-G A)U-CMU|-G 61 GCUCAG-NGC -GAAC-GH-- UGGC-GGC-A -UGC-UW--A ACAC-AUGCA A-UUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 -------GCG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGV- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAC---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAAA- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ASUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAU-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGG C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -CC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGGgYC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACUU -AAG-C--CG 3121 G-UG--G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(G-A-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS A.interm.3 4376 bp RNA RNA 03-OCT-1997 DEFINITION Acetobacter intermedius.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION Y14694 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Acetobacter intermedius. ORGANISM Acetobacter intermedius. REFERENCE 1 (bases 1 to 1481) AUTHORS Boesch,C., Trcek,J., Tueber,M. and Sievers,M. TITLE Acetobacter intermedius, spec., is acetic acid tolerant, in contrast to Acetobacter europaeus not acetic acid dependent JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1481) AUTHORS Boesch,C. TITLE Direct Submission JOURNAL Submitted (26-AUG-1997) C. Boesch, Laboratory of Food Microbiology, ETH-Zuerich, Schmelzbergstrasse 9, CH-8092 Zuerich, SWITZERLAND STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y14694 Related sequence Y14680. BASE COUNT 349 a 344 c 491 g 296 t 2896 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~GAGUU(U-G A)U-CMU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-A U-CCAC---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGG C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -CC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.paster 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter pasteurianus str. LMD 22.1 LMG 1262. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter pasteurianus str. LMD 22.1 LMG 1262. ORGANISM Acetobacter pasteurianus. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71863|g472865 isolate_name= LMD 22.1 BASE COUNT 351 a 333 c 487 g 311 t 2894 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GU (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- U-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G CCUGC----- -GU|----UU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UA-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-GUGC A-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------A|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--CA---- --CU-(UAA- ---C)G-CG- UUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG GCGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG A-A-UG|--- ---------U ---AGAGG-- -CU----GCA 1981 -AGC-A--(- GAGA-)-UGU -U-UGUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--GAGUG GGA-A-G-C- UA-GGU-G(G 2881 -UGA)CACC- ---------- AU-GGUGA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G--C-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.aceti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter aceti. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter aceti. ORGANISM Acetobacter aceti. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74066|g537405 NCIMB 8621 (T) = CCUG 18122 = LMG 1261 = ATCC 15973 = DSM 3508 BASE COUNT 351 a 333 c 484 g 312 t 2896 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G UCUGC----- -GU|----UU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UA-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-GUGC A-GACUA-GA GUA-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CUCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUA -CUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG U-A-UG|--- ---------G ---AGAGG-- -CU----GUA 1981 -UUC-A--(- GAGA-)-UGG -A-UAUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-GAU-G(G 2881 -CGA)CAUC- ---------- GU-GCCGA-U CUCU--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.aceti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter aceti. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter aceti. ORGANISM Acetobacter aceti. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30768|g516644 BASE COUNT 336 a 318 c 463 g 293 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G CCUGC----- -GU|----UU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UA-CAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-GUGC A-GACUA-GA GUA-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CUCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUA -CUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG U-A-UG|--- ---------G ---AGAGG-- -CU----GUA 1981 -UUC-A--(- GAGA-)-UGG -A-UAUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-GAU-G(G 2881 -CGA)CAUC- ---------- GU-GCCGA-U CUCU--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Adm.methan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidomonas methanolica str. MB 58 IMET 10945 (T). ACCESSION No information KEYWORDS No information. SOURCE Acidomonas methanolica str. MB 58 IMET 10945 (T). ORGANISM Acidomonas methanolica. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30770|g516652 IMET 10945 (T) = ATCC 43581 = DSM 5432 = LMG 1668 isolate_name= MB 58 BASE COUNT 325 a 326 c 479 g 281 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GU (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AGC -GC-GUAGG- G-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CA-GGG-C(- UU-A)A-CCU -UG-G-GGC- 1321 -UGCA-UUUG A-GAC-GUGU U-GACUG-GA GUU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CUCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---GGAGG-- -CU----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-CU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---AU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -UGA)UGCU- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CAG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Adm.metha2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidomonas methanolica str. MB 58 IMET 10945 (T). ACCESSION No information KEYWORDS No information. SOURCE Acidomonas methanolica str. MB 58 IMET 10945 (T). ORGANISM Acidomonas methanolica. REFERENCE 1 AUTHORS Sievers,M., Corpataux,F., Meile,L., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information REFERENCE 2 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Revival of the species Acetobacter methanolicus (ex Uhlig et al. 1986) nom. rev. JOURNAL Syst. Appl. Microbiol. 17, 352-354 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77468|g510681 Former RDP Sids: Aba.methan IMET 10945 (T) = ATCC 43581 = DSM 5432 = LMG 1668 isolate_name= MB 58 NB: former name Acetobacter methanolicus BASE COUNT 343 a 343 c 499 g 296 t 2895 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GU (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AGC -GC-GUAGG- G-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G CCUGC----- -GU|----UC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CA-GGG-C(- UU-A)A-CCU -UG-G-GGC- 1321 -UGCA-UUUG A-GAC-GUGU U-GACUG-GA GUU-----CG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -CUCAG-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---GGAGG-- -CU----AUA 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-CU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---AU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -UGA)UGCU- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--AG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.diaztr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter diazotrophicus. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter diazotrophicus. ORGANISM Acetobacter diazotrophicus. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75618|g510678 ATCC 49037 = LMG 7603 BASE COUNT 344 a 343 c 501 g 299 t 2889 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AUG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 G-GA-CAG|U CAG---AUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUAC A-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CCC -CUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---GGAGG-- -CU----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-CU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---AU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GUGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -CGA)UGCC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CCCA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GGGGCG-C-A G-C--GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.liqfac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter liquefaciens. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter liquefaciens. ORGANISM Acetobacter liquefaciens. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75617|g510680 IFO 12388 = LMG 1382 BASE COUNT 350 a 343 c 495 g 298 t 2890 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- U-A--UCU-A U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|G CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-AU- 1261 G-GA-CAG|U CAG---AUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUCC A-AACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------G ---GGAGG-- -CU----GUA 1981 -UCC-A--(- GAGA-)-UGG -G-UAUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUC-CU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---AU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -CGA)UGCC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGCG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.hansen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter hansenii. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter hansenii. ORGANISM Acetobacter hansenii. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75620|g510679 NCIMB 8746 = LMG 1527 BASE COUNT 347 a 343 c 496 g 298 t 2892 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-UAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GA 481 CU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 U-UA-CAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGA C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GU- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -AU-GGC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UG|--- ---------C ---GGAGG-- -CU----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -CGA)UGCC- ---------- GA-GCGGA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.xylinm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter xylinum. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter xylinum. ORGANISM Acetobacter xylinum. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE Rhodopila and Acidiphilium species as a branch of acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences Phylogenetic positioning of Acetobacter, Gluconobacter, JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75619|g510818 NCIMB 11664 = LMG 1515 BASE COUNT 351 a 345 c 491 g 297 t 2892 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-C A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GG-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-A-GGC- 1321 -UGCA-UUUG A-UAC-AUGG C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -CC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-A(G 2881 -CGA)UACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CC-GA-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aba.europa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetobacter europaeus str. DES11 DSM 6160. ACCESSION No information KEYWORDS No information. SOURCE Acetobacter europaeus str. DES11 DSM 6160. ORGANISM Acetobacter europaeus. REFERENCE 1 AUTHORS Sievers,M., Ludwig,W. and Teuber,M. TITLE acidophilic bacteria in the alpha-subclass of Proteobacteria based on 16S ribosomal DNA sequences Phylogenetic positioning of Acetobacter, Gluconobacter, Rhodopila and Acidiphilium species as a branch of JOURNAL Syst. Appl. Microbiol. 17, 189-196 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6160 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21936|g472861 isolate_name= DES11 BASE COUNT 350 a 342 c 491 g 299 t 2894 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- G-A--UCU-G U-CCAU---G -GGUG-G-GG 421 -GAU-AA-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GUGG-- AGG---A-|A CCUGC----- -GU|----UC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-UAC-GUGG C-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UUUGGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GU-GAC--- ---------- 1681 -(-UU-U-)- ---------- ---------- -G-------- -------UCA -UUCAG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---GGAGG-- -CC----GUG 1981 -UCC-A--(- GAGA-)-UGG -G-CAUU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| CUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-A(G 2881 -CGA)UACC- ---------- GA-GCCGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCU -UAA-G-CCG 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-GC--A-CC A-CGGU-CGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C- UGCGGC--UG GAUCACCUCC 3361 UUUC|UG... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acc.facili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidocella facilis str. PW2 ATCC 35904 (T). ACCESSION No information KEYWORDS No information. SOURCE Acidocella facilis str. PW2 ATCC 35904 (T). ORGANISM Acidocella facilis. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35904 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79371 (bases 1 to 345) Former RDP Sids: Acdp.facil isolate_name= PW2 NB: former name Acidiphilium facilis BASE COUNT 219 a 196 c 268 g 201 t 3492 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- CUK-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GNN-NN- CKA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGM-MAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-HMA UCCA|-GCAA UGCC-GM-GU 961 G-U-GU-G-A A-GAA--G-G HM(--HH-CN --)NA-UUGU AAA--GCAC| HHUU-GG-CA 1021 --NG-GMC-U GAU------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCH-M-CA G-AA--UAAG ---------C 1141 -CCCVGCH-M ACUUC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|.....U- 1261 G-UA-CAG|U CAG---AAGU G-AAA-UU-C CU--GG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCU-UUUG A-UAC-GUGC A-AGCUA-GA GUG-----AG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--UN-AA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----RGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------A|G -AU-GU-UGG -GG-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUU -CUCAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUAA-GCACA C|A|G-CCU- R-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... ........C| CUU-CC-G-A |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-ACA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGA-A-G-C- UA-GGU-A(G 2881 -UGA)UACC- ---------- GU-GCUCA-U CUCU--AAAA -GC-C-AUC- UCAGUUCAGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUMCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acc.facil2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidocella facilis str. PW2 ATCC 35904 (T). ACCESSION No information KEYWORDS No information. SOURCE Acidocella facilis str. PW2 ATCC 35904 (T). ORGANISM Acidocella facilis. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35904 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30774|g516649 Former RDP Sids: Acdp.faci2 isolate_name= PW2 NB: former name Acidiphilium facilis BASE COUNT 343 a 317 c 455 g 292 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- A-A--UCU-A U-CCCA---G -GGUG-G-GG 421 -GAC-AA-CA G--------- ------CG-- G(-GAAA-)C -UGCU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----UGGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-AU- 1261 G-UA-CAG|U CAG---AAGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCU-UCUG A-UAC-GUGC A-AGCUA-GA GUG-----AG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUU -CUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGG-- -AC----CGG 1981 -UAC-A--(- GAGA-)-UGU -A-CUUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGA-A-G-C- UA-GGU-A(G 2881 -UGA)UACC- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-AUC- UCAGUUCAGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UAG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A G-CC-UA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acc.amnlyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidocella aminolytica str. 101 (T) JCM 8796. ACCESSION No information KEYWORDS No information. SOURCE Acidocella aminolytica str. 101 (T) JCM 8796. ORGANISM Acidocella aminolytica. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 8796 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30771|g516646 Former RDP Sids: Acdp.alyti JCM 8796 = ATCC 51361 isolate_name= 101 (T) NB: former name Acidiphilium aminolytica BASE COUNT 340 a 316 c 452 g 296 t 2972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- A-A--UCU-A U-CCAG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------CG-- G(-GAAA-)C -UGCU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----UUGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-AU- 1261 G-UA-CAG|U CAG---AAGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCU-UUUG A-UAC-GUGC A-AGCUU-GA GUG-----AG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--UU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GA-AAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UUU --UCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGG-- -CU----UGG 1981 -UAC-A--(- GAGA-)-UGU -A-UCUU--- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA--C| CUU-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C CU-CN----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGA-A-G-C- UA-GGC-G(G 2881 -UGA)CGCC- ---------- GU-GCUGA-U CUCU--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-CAG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-UA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2078 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2078. str. SBR2078. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2078. str. SBR2078. ORGANISM str. SBR2078. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84609|g871730 isolate_name= SBR2078 BASE COUNT 90 a 83 c 129 g 68 t 4006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CA (--GC----- ---------- ---------- 241 --------AA -)UG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--CGU-A U-CCUG---A -GGUG-G-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GGC-(-- --------GA 541 GA-------- -)-GCC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UGGG-- AGC---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU GAA--GUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.rubr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium rubrum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium rubrum. ORGANISM Acidiphilium rubrum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30776|g516651 BASE COUNT 335 a 319 c 468 g 291 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CAG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GAUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GAC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--UCU---- 661 ----GGGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 A-CA-UAG|U UAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUA A-UAC-AUGU A-GGCUU-GA GUG-----UG A-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---AAGAG-- -AC----GUG 1981 -CCC-A--(- GAGA-)-UGG -G-UAUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GC---| UCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-AGC-A(G 2881 -CGA)UGCU- ---------- GA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UUG 3121 A-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-AA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.angu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium angustum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium angustum. ORGANISM Acidiphilium angustum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30772|g516647 BASE COUNT 335 a 319 c 468 g 291 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CAG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GAUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GAC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--UCU---- 661 ----GGGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 A-CA-UAG|U UAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUA A-UAC-AUGU A-GGCUU-GA GUG-----UG A-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---AAGAG-- -AC----GUG 1981 -CCC-A--(- GAGA-)-UGG -G-UAUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GC---| UCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-AGC-A(G 2881 -CGA)UGCU- ---------- GA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UUG 3121 A-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-AA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.spQBP 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium sp. str. QBP. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium sp. str. QBP. ORGANISM Acidiphilium sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79395 (bases 1 to 329) isolate_name= QBP BASE COUNT 213 a 198 c 298 g 204 t 3463 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). ..UAC-G--C UAAUACC-KC 481 AU-AAG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GAC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--UCU---- 661 ----KGGK-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GK-UG-GG-( GU-AAA-GG) -C-CUACU-K A|-GCC-UN- CGA------- -----UC-AG 781 U-AG-C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UKA UCCA|-GCAA UGCC-GN-GU 961 G-G-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCCN| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-N ACU......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|A GUA---GCGU G-AAA-UU-C CU--GG-C(- UC-A)A-CCU -GG-G-GCU- 1321 -GCGU-CUG- A-UAC-UAUG U-AGCUU-GA GUG-----UG A-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACU-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -NNACCUG-- ---------- ---------- ---------G 1501 UUC--NU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--N 1621 AAC-N-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- GUAA-GCDCA C|C|G-CCU- N-GGGAGUAC 1801 GGC-G---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |...C|A--G 2161 GU-GC-UG-A UG|--CUG-- UCG-UCA|-B --U----G-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGWG-C--GC AACCC-UC-G |-CN--KUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C SUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-AGC-A(G 2881 -CGA)UGCU- ---------- NA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.angus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium angustum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium angustum. ORGANISM Acidiphilium angustum. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79365 (bases 1 to 339) BASE COUNT 225 a 211 c 299 g 203 t 3438 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(..AAN-)C -UACG-G--C UAAUACN-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----NAAA-- ---GAC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--UCU---- 661 ----UGGN-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACN-N A|-GCC-NN- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-NNA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UN(--UU-CG --)GA-UUGU AAA--GCCN| NUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCN-N ACU......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .CG-UAG-GC -G|--C-UU- 1261 A-CA-UAG|U UAG---GCGU G-AAA-UU-C CU-NGG-C(- UC-A)A-CCU -GG-G-N-C- 1321 -UGCG-UCUN A-UAC-AUGU A--GCNY-GA GUG-----UG A-AA-GAGGG UCG-U|SGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUN-- ---------- ---------- ---------G 1501 UUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--US-CU-- -------S|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --NS-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .........A |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-AGC-A(G 2881 -CGA)UGCU- ---------- NA-GCUNA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CNGUN- AAUAC-NUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.rubru 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium rubrum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium rubrum. ORGANISM Acidiphilium rubrum. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79379 (bases 1 to 383) BASE COUNT 245 a 230 c 344 g 226 t 3331 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ......GG-U -AGU----AC -GC-GUAGG- A-A--UCU-A U-CC...... .......... 421 .......... .......... .........- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ----SC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----GAAA-- ---GAC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--UCU---- 661 ----GGGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACN-N A|-GCC-NN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UNA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UN(--UU-CG --)GA-UUGU AAA--GCCN| NNUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCN-N ACUUC....( .......... .........) .......... |......... 1201 .......... UC-UGAAUGA -CU-GGGC|G UAAA-GGGN- -CG-UAG-GC -G|--C-UU- 1261 A-CA-UAG|U UAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-G-C- 1321 -UGCG-UCUA A-UAC-AUGU A-GGCUU-GA GUG-----UG A-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUN-- ---------- ---------- ---------G 1501 UUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......UUG ACA-UG|--- ---------- ----AGAG-- --C----GUG 1981 --CC-A--(- GAGA-)-UNN -N-U-U---- -C-------- ---C------ --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- A-)------- -G-------- ----GN---| NCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- U-AGA-GG-R A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-AGC-A(G 2881 -CGA)UGCU- ---------- GA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.acidop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus acidophilus. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus acidophilus. ORGANISM Thiobacillus acidophilus. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79400 (bases 1 to 340) BASE COUNT 225 a 221 c 330 g 205 t 3395 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... ....CUC--- ---------- 601 --(------- ---GUGA--- ---)------ ---------| ---GA---C- G--UCU---- 661 -----GGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-NN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-Y ACG)--GCCN -NAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCCN| NUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCG-CU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UA--CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UA-UAG|U UAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G---C- 1321 -UGCG-UCUA A-UAC-AUGC A-GGCUU-GA GUG-----UG A-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GK--GC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .........A |---C|A--G 2161 GC-GC-NGCA UG|G-CUG-- UCG-UCA|-N C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 N-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGR-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -CGA)UGCC- ---------- GA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.spC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium sp. str. C-1. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium sp. str. C-1. ORGANISM Acidiphilium sp. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30769|g516645 biol_source= mine drainage isolate_name= C-1 BASE COUNT 327 a 328 c 477 g 285 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UCGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G U-CUUU---G -GAUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UG 541 AG-------- -)-GGC---- ---------- ----CAAA-- ---GCUC--- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ---GAG--C- G--UCU---- 661 ----GAAG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUG A-UAC-GUGC U-GGCUU-GA GUA-----UG G-AA-GAGGG UCG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---AAGAG-- -AC----GUG 1981 -UCC-A--(- GAAA-)-UGG -G-CAUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----G---C| UCU-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGC-A(G 2881 -CGA)UGCC- ---------- GA-GCUGA-U CCUG--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UUG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SM2321 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK2321.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK2321. ORGANISM clone SMK2321. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78643|g509484 BASE COUNT 54 a 49 c 75 g 35 t 4163 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..GA 541 AG-------- -)-GGA---- ---------- ----CAAA-- ---GCC---- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ----NN--N- N--NUU---- 661 -----UGG-- AGC---A-|G CCUGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UG- C-A------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G U.(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.organ 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium organovorum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium organovorum. ORGANISM Acidiphilium organovorum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30775|g516650 BASE COUNT 330 a 328 c 477 g 278 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GGUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----AAGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CG- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUG A-GAC-GUGU U-GUCUU-GA GUA-----UG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGU-- -AC----CGG 1981 -UCC-A--(- GAGA-)-UGG -A-CUUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-GC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(GC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UUG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-AA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.cryp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium cryptum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium cryptum. ORGANISM Acidiphilium cryptum. REFERENCE 1 AUTHORS Kishimoto,N., Kosako,Y., Wakao,N., Tano,T. and Hiraishi,A. TITLE Transfer of Acidiphilium facilis and Acidiphilium aminolytica to the genus Acidocella gen. nov., and emendation of the genus Acidiphilium JOURNAL Syst. Appl. Microbiol. 18, 85-91 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30773|g516648 BASE COUNT 329 a 329 c 476 g 279 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GGUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GAGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CG- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUG A-GAC-GUGU U-GUCUU-GA GUA-----UG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGU-- -AC----CGG 1981 -UCC-A--(- GAGA-)-UGG -A-CUUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- UU-UG-ACCU -UAA-G-UUG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-AA-CC A-CGGU-CGG GUC-AG-AG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.crytp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium cryptum. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium cryptum. ORGANISM Acidiphilium cryptum. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79368 (bases 1 to 303) BASE COUNT 219 a 210 c 317 g 197 t 3433 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(..AAA-)C -UACG-N--C UAAUACN-GC 481 AU-GAU---- ---------- ---------- ---------- ----CC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GNN---- ---------- 601 --(------- ---NNAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GAGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUCC| NUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCN-N NCU......( .......... .........) .......... |......... 1201 .AG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CG- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-N-C- 1321 -UGCG-UCUG A-GAC-GUGU U-GUCUU-GA GUA-----UG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UN CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCN- N-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .........U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)--CCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--NUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CNUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACU AUGGC-G-GU -GA--CWGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GNC- UCWGUUCGGA 2941 U-UGCACUC- (UGCUAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUU-AUC 3001 GC-GGA-(UC -UGC-AU)-G CNG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.acido2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus acidophilus.. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus acidophilus. ORGANISM Thiobacillus acidophilus. REFERENCE 1 AUTHORS Venegas,A. JOURNAL Nucleic Acids Res. 0, 0-0 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X07839 BASE COUNT 48 a 55 c 75 g 47 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|...AG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AAGCAA---- ---------- ---------- --UG(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-A-G--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U C......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdp.cryp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidiphilium cryptum str. B-Het4. ACCESSION No information KEYWORDS No information. SOURCE Acidiphilium cryptum str. B-Het4. ORGANISM Acidiphilium cryptum. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75265|g496394 biol_source= batch bioreactor, heterotroph isolate_name= B-Het4 BASE COUNT 300 a 293 c 434 g 253 t 3096 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GGUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GAGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--GUCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CG- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUG A-GAC-GUGU U-GUCUU-GA GUA-----UG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGU-- -AC----CGG 1981 -UCC-A--(- GAGA-)-UGG -A-CCUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----G----| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS6.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS6. ORGANISM clone cOS6. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86771|g870916 BASE COUNT 302 a 295 c 435 g 257 t 3087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A U-CCUU---G -GGUG-G-GG 421 -GAC-AA-CC G--------- ------UG-- G(-GAAA-)C -UACG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GAGG-- AGG---A-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--GUCC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CG- 1261 G-CA-CAG|U CAG---GCGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UCUG A-GAC-GUGU U-GUCUU-GA GUA-----UG G-AA-GAGGG UUG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUC- G-CU-GU--A 1621 AAC-G-AUGU G--UG-CU-- -------G|G -AU-GU-UGG -GG-UGC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------CAC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- GUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AU-UUG ACA-UG|--- ---------G ---GGAGU-- -AC----CGG 1981 -UCC-A--(- GAGA-)-UGG -A-CUUU--- -C-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----G----| CUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-N |-CC--UUC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-NC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- CA-GGU-G(G 2881 -UGA)CACC- ---------- GA-GCUGA-U CUCA--NAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS T.cuprina 4376 bp RNA RNA 03-SEP-1997 DEFINITION Thiomonas cuprina subsp. was Thiobacillus cuprinus; . ACCESSION U67162 KEYWORDS . SOURCE Thiomonas cuprina subsp. was Thiobacillus cuprinus. ORGANISM Thiomonas cuprina. REFERENCE 1 (bases 1 to 1507) AUTHORS Moreira,D. and Amils,R. TITLE restriction fragment analysis of the mixotrophic thiobacilli: characterization of their phylogenetic relationships Complete nucleotide sequence of the 5S and 16S rRNA coding genes from Thiobacillus cuprinus, and low-frequency JOURNAL Unpublished STANDARD No information REFERENCE 2 (bases 1 to 1507) AUTHORS Moreira,D. and Amils,R. TITLE Direct Submission JOURNAL Submitted (19-AUG-1996) Centro de Biologia Molecular, Universidad Autinoma de Madrid, Cantoblanco, Madrid, Madrid 28049, Spain STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U67162 BASE COUNT 371 a 339 c 493 g 299 t 2874 others ORIGIN 1 ---------- ---------- ---------- ------GAUU AAGAGU(U-G A)U-CGU|-G 61 GCCUCA-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAU 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------ag cacucgg-ga (--gc----- ---------- uug------- 241 --------ca -)uc-uggg- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -----gcg-- AGUG-GCGA- 361 -U-CG-GG-A GAGU---AAU -AC-AUCGG- A-A--CAU-G C-CCUG---U -AGUG-G-GG 421 -GUU-AG-CC C--------- ------GG-- C(-GUAA-)G -CCGG-A--A UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---GUC-(-- --------au 541 ug-------- -)-GAC---- ---------- ----GAAA-- ---GCG---- ---------G 601 GG(----GAC CUUCGGG--- ---)CCU--- ---------| ----CG--C- G--CUA---- 661 ----UGGG-- GCU---G-|G CCGAA----- -UG|----GU G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-UGACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GU-C-- CAG-C|C-AC -ACUGG-G-U 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--U GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCGA|-GCAA UGCC-GC-GU 961 G-U-GA-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CC 1021 --GG-UAU-- GA-----agg cgauggcag( ------uaau a--------) cuuucgggug 1081 a--------- ---------- U-GA-CGUU- A-CGG-G-UA G-AA--CAAG ---------C 1141 -UACGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA CC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-A(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAAGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GGU(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- GAUA-CCGU- 1441 -U-G-GC(-G UA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC AA-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AGGU C--GA-CU-- -------G|G -UU-GU-UGG -AC-GG---- ---------- 1681 -(-GA-A-)- ---------- ---------- -A-------- -------CUG -UUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AUG A-UCGU-GGU -UUAAUU-CC G(AUGCAA-C G)-CGAACAA 1921 A-CCUUU-AC CUN-NC-CUU GAC-AU|--- ---------G ---UCUGG-- -AA----NNC 1981 -CGA-A--(- GAGA-)UUUG -G-GAGUG-- UC-------- ---GA----- --(AA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GA-------- ----G----| CCA-GA-ACA |---C|A--G 2161 GU-GCGUGCA UG|G-CUGUG UCA-GCU|-G C-N---GU-G |CU-G(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGUC-G--GC GGAAC-CC-U |-UG--UCA- 2281 UU--AGUU-G CU-A------ ---------- ---------- ---C(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACCGG- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGA-C-GG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCA--UAAA -AC-CGUUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- -U-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAGGG-C-C G-AU-UA-CC A-CGGU-AGG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.5 OSP.PUSILLUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.5 OSP.PUSILLUM_GROUP. ORGANISM 2.14.1.1.5 OSP.PUSILLUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.pusill 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum pusillum. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum pusillum. ORGANISM Oceanospirillum pusillum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 367 a 321 c 442 g 308 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGG 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAG---- ---|------ ACCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CRU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUCG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AG-(GAA A)-CUC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GU-GAU-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCG-U-CA A-AA--GAAG ---------U 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAA-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GA-UU- 1261 G-GA-CAG|U UGA---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -GGCC-UUCA A-UAC-UUCC A-GUCUA-GA GUC-----CG U-AA-GGGGG UGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 UAC--GG-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CAG -GA-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAU -CUUGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC NAU-UC-UUG ACA-UA|--- ---------C ---CUGU-C- GCG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACA-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AUG-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GA -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AC -UA--CAGUG GGC-A-G-C- GA-CGU-C(G 2881 -CGA)GGCG- ---------- AA-GCAAA-U CUCC--AAAA -GU-U-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGG-G-CU -AA-CCUU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGN.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MV1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. MV1. str. MV1. ACCESSION No information KEYWORDS No information. SOURCE str. MV1. str. MV1. ORGANISM str. MV1. REFERENCE 1 AUTHORS DeLong,E.F., Frankel,R. and Bazylinski,D. TITLE Multiple evolutionary origins of magnetotaxis in bacteria JOURNAL Science 259, 803-806 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06455 isolate_name= MV1 NB: IDENT: member R.rubrum/Azospirillum group BASE COUNT 338 a 303 c 420 g 293 t 3022 others ORIGIN 1 .......... .......... .......... .......... ....CN(U-G A)U-C-U|-- 61 GCUCAG-AAC -GAAC-GC-- UGGC-G-C-A -UGC-CU--A ACAC-AUGCA A-GUU-GAAC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-CC (--UU----- ---------- ---------- 241 --------CG -)G--CCG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-G C-CAAG---C -AGUG-G-GG 421 -AAU-AA-CC U--------- ------UU-- G(-GAAA-)C -GAAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----UUUG-- AUG---G-|U CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GU-GAU-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GA-UA- 1261 G-AU-UAG|U CAG---AGGU G-AAA-GC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGUU U-AUCUU-GA GUC-----CG A-GA-GAGGG UAG-U|GGAA 1381 UU-UCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-UGG -GA-UC---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GGU -CUCAG-UGG 1741 CG--CC---- --NN-(GAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------C ---CGAU-C- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GG)-UCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GG--A UG-ACG--UC -A-AGUC-CU CAUCG-G--- -UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGU-U-G-C- GA-CCU-C(G 2881 -CGA)GAGG- ---------- UA-GCCAA-U CCCU--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGNA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN NNGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.6 R.SALINARUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.6 R.SALINARUM_GROUP. ORGANISM 2.14.1.1.6 R.SALINARUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.salinarm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum salinarum. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum salinarum. ORGANISM Rhodospirillum salinarum. REFERENCE 1 AUTHORS Mack,E.E., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Rhodospirillum sodomense, sp. nov., a Dead Sea Rhodospirillum species JOURNAL Arch. Microbiol. 160, 363-371 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59069 ATCC 35394 = NCIMB 2243 BASE COUNT 331 a 363 c 470 g 248 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--A CGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGN- A-A--UCU-A C-CCUA---A -AGUC-G-GG 421 -GAU-AA-CC G--------- ------CU-- G(-GAAA-)C -GGCG-G--C UAAUACC-GN 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UAGG-- AGG---A-|G CCCNC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-NN- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GCA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCNN| NUUC-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CC- 1261 A-GC-AAG|U CAG---AAGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAG- 1321 -UGCC-CUUG A-AAC-UGCA G-GUCUU-GA GUC-----CG G-AA-GAGGA GAG-C|GCAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GG-NA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CG-CN-- -------A|G -CC-GU-UGG -GC-AAC--- ---------- 1681 -(-CU-A-)- ---------- ---------- -G-------- -------UUG -UUCAG-UGG 1741 CG--CA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCGU--- CGC----GCC 1981 -UCG-G--(- GAGA-)-CCG -A-GGCUU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACG-GA-ACA |---C|A--G 2161 GN-NN-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-U AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GC -GA--CAGAG GGA-A-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GC-GCGAA-U CUCC--AAAC -GC-C-NUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.salinar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum salinarum. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum salinarum. ORGANISM Rhodospirillum salinarum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14432|g633104 NCIMB 2243 = ATCC 35394 BASE COUNT 319 a 358 c 475 g 247 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--A CGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUA---A -AGUC-G-GG 421 -GAU-AA-CC G--------- ------CU-- G(-GAAA-)C -GGCG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UAGG-- AGG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CC- 1261 A-GC-AAG|U CAG---GGGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAG- 1321 -UGCC-CUUG A-AAC-UGCA G-GUCUU-GA GUC-----CG G-GA-GAGGA GAG-C|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GG-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CG-CU-- -------A|G -CC-GU-UGG -GC-AAC--- ---------- 1681 -(-CU-A-)- ---------- ---------- -G-------- -------UUG -UUCAG-UGG 1741 CG--CA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCGU--- CGC----GCA 1981 --CG-G--(- GAGA-)-CCG -A-GGCUU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-U AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GC -GA--CAGAG GGA-A-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GC-GCGAA-U CUCC--AAAC -GC-C-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.sodomens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum sodomense str. DS1 ATCC 51195. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum sodomense str. DS1 ATCC 51195. ORGANISM Rhodospirillum sodomense. REFERENCE 1 AUTHORS Mack,E.E., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Rhodospirillum sodomense, sp. nov., a Dead Sea Rhodospirillum species JOURNAL Arch. Microbiol. 160, 363-371 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51195 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59072 isolate_name= DS1 BASE COUNT 319 a 363 c 474 g 249 t 2971 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CN (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--A CGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCCA---A -AGUC-G-GG 421 -GAU-AA-CC G--------- ------CU-- G(-GAAA-)C -GGCG-G--C UAAUACC-GN 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AU 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AGG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-UN- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(NCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCN| UUUC-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CC- 1261 A-CC-AAG|U CAG---GGGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAG- 1321 -UGCC-CUUG A-AAC-UGAU G-GUCUU-GA GUC-----CG G-GA-GAGGA GAG-C|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GG-NA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CG-CU-- -------A|G -CC-GU-UGG -GC-AAC--- ---------- 1681 -(-CU-A-)- ---------- ---------- -G-------- -------UUG -UUCAG-UGG 1741 CG--CA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGNAU UG-ANGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCCU--- NGC----GCC 1981 -UCG-G--(- GAGA-)-CCG -A-GNCUU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----UG---| GAG-GG-AGA |---C|A--G 2161 GN-NN-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NN-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GC -GA--CAGAG GGA-A-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GC-GCGAA-U CUCC--AAAC -GC-C-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGN-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-CCG 3121 G-UGC-G-CN -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GA-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.1.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.1.7 ENV.JAP504_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.1.7 ENV.JAP504_GROUP. ORGANISM 2.14.1.1.7 ENV.JAP504_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP504 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP504.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP504. ORGANISM clone JAP504. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09570|g495497 BASE COUNT 79 a 66 c 92 g 71 t 4068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AG-AA-G CU-------- ---------- ---------- ---------- ---------- 181 ---------- ------AACC UCUGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAU GAGGUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GGC|-AG-AA AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUG-UUU -AGUG-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GAGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------G-U CU-U--C-UC ---CUC-(-- --------AU 541 UA-A------ -)-GAG--AA G--AA----G AU--UAAA-- ---GGUGGC- CUCUAU---- 601 --(------- ----ACU--- ---)------ -----AU--| -GCUAU--C- G--CUU---- 661 ----CAGG-- AUG---A-|G CCUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-CA- CAA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP604 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP604.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP604. ORGANISM clone JAP604. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09571|g495498 BASE COUNT 79 a 66 c 90 g 73 t 4068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AG-AA-G CU-------- ---------- ---------- ---------- ---------- 181 ---------- ------AACC UCUGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAU GAGGUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GGC|-AG-AA AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUG-UUU -AGUG-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GAGG-C--U UAAUACC-GC 481 AU-AAG---- ---------- -------G-U CU-U--C-UC ---CUC-(-- --------AU 541 UA-A------ -)-GAG--AA G--AA----G AU--UAAA-- ---GGUGGC- CUCUAU---- 601 --(------- ----ACU--- ---)------ -----AU--| -GCUAU--C- G--CUU---- 661 ----CAGG-- AUG---A-|G CCUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-UG) -C-CUACC-A A|-GAC-CA- CAA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP751 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP751.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP751. ORGANISM clone JAP751. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09574|g495501 BASE COUNT 86 a 69 c 87 g 65 t 4069 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AG-AA-G CU-------- ---------- ---------- ---------- ---------- 181 ---------- ------AACU UCUGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAU GAGGUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AGC|-AG-AA AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUG--CA -AGUG-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GAGG-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-U--C-AC ---UCC-(-- --------CA 541 AA-A------ -)-GAA--GA G--AA----G AU--UAAA-- ---GAUGGC- CUCCAU---- 601 --(------- ----ACU--- ---)------ -----AU--| -GCUAU--C- G--CUU---- 661 ----CAGG-- AUG---A-|G CCUGC----- -GU|----CC U--AUCA-G- UUA-G---UU 721 GA-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-CA- CAA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP750 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP750.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP750. ORGANISM clone JAP750. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09572|g495499 BASE COUNT 83 a 65 c 87 g 72 t 4069 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AG-AA-G CU-------- ---------- ---------- ---------- ---------- 181 ---------- ------AACU UCUGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAU GAGGUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AGC|-AG-AA AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUG-UUU -AGUG-G-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GAGG-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-U--U-AU ---CCC-(-- --------AA 541 AA-------- -)-GAG--GU A--AA----G AU--UAAA-- ---GAUGGC- CUCUAU---- 601 --(------- ----ACU--- ---)------ -----AU--| -GCUAU--C- A--CUU---- 661 ----CAGG-- AUG---A-|G CCUGC----- -GU|----CC U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-CA- CAA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2 RICKETTSIA_AND_OTHERS. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2 RICKETTSIA_AND_OTHERS. ORGANISM 2.14.1.2 RICKETTSIA_AND_OTHERS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.1 OCEANIC_STRAINS. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.1 OCEANIC_STRAINS. ORGANISM 2.14.1.2.1 OCEANIC_STRAINS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11934 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 90 a 43 c 76 g 70 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 A....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52172 library_source= Sargasso Sea bacterioplankton DNA geog_source= Sargasso Sea, 1-2 metres depth BASE COUNT 313 a 214 c 313 g 266 t 3270 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GUAC-GC-- UGGC-GGC-A -C-C-GU--U AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-U C-CCUU---U -GGUG-A-GG 421 -AAU-GA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-UC 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- G--CCG---- 661 ----AAGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UU- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGA-AACAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GGGA UGCC-GC-GU 961 G-A-GU-G-A A-GGAA-G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-G-AA U-AA--GAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCAG-UGU 1741 CG--CA---- --GC-(GAA- ---A)N-AU- -UAA-ACACA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGCAGA 1921 A-CCUU.... ..C-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--AC AACCC-UC-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-UGG-C UG-G...... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11951 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 75 a 32 c 60 g 60 t 4149 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA. .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11941 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 75 a 33 c 61 g 60 t 4147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-G....... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11939 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 69 a 30 c 57 g 60 t 4160 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-UAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUG....... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52280 library_source= Sargasso Sea bacterioplankton DNA biol_source= uncultivated oceanic surface water natural microbial population geog_source= Sargasso Sea BASE COUNT 313 a 220 c 313 g 264 t 3266 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GUAC-GC-- UGGC-GGC-A -C-C-NU--U ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACN)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-AC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUCUCGU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-G-AA U-AA--GAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UAG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUUA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCAG-UGU 1741 CG--CA---- --GC-(GAA- ---A)C-AU- -UAA-ACACA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AC --GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-C UG-G...... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-25 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11942 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 90 a 43 c 75 g 71 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UAG---UGGU G-AAA-UC-C CA-GUG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUUA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 A....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FL11 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone FL11.. ACCESSION No information KEYWORDS No information. SOURCE clone FL11. ORGANISM clone FL11. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10935 Former RDP Sids: env.FL5 NB: email from EFDeLong indicated that this is really FL11; BASE COUNT 387 a 282 c 377 g 325 t 3005 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AAC -GUAC-GC-- UG-C-G-C-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGA- U-CCC-G-AA U-AA--SAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UAG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUUA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-C-U- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------UUU -UCAGU-GUC 1741 GC--AG---- --GG-(A-A- ---A)C-CG- AUAA-ACACA C|C|G-CCU- G-GGGAGUAC 1801 GAC-N---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--NGNAGA 1921 A-CCUUA-CC AAC-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAACA GGA-A-G-C- AA-GAC-U(G 2881 -CGA)AGUU- ---------- AA-GCAAA-U CCCU--AAAA -GA-U-ACC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-UAC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-GU)-G CCA-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCU -UAA-G-GCA 3121 A-GGU-U-UC -AA-A..... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY43 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY43.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY43. ORGANISM clone PLY43. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S rRNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster' JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13159|g535412 amplification_primer= 3':primers 1492R amplification_primer= 5':primers 27F biol_source= seawater NB: method:PCR BASE COUNT 393 a 292 c 383 g 326 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GUAC-GC-- UGGC-GGC-A -----CU--A GCAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-A C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-G-AA U-AA--GAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------UUU -UCAGU-GUC 1741 GC--AG---- --CG-(A-A- ---A)G-CG- AUAA-ACACA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CU U-)------- CC-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UG -UU--GCGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAACA GGA-A-G-C- AA-AAC-G(G 2881 -CAA)CGUU- ---------- AA-GCAAA-U CCCG--AAAA -GA-U-ACC- UCAGUUCGGA 2941 U-UGCGCUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-GU)-G CCA-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AGGG A--GU-UGG- UU-CU-ACCU -UAA-G-GCA 3121 A-G-GUU--- ---------- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-C CCUU-GA-CC A-CGGU-AUA GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FL1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone FL1.. ACCESSION No information KEYWORDS No information. SOURCE clone FL1. ORGANISM clone FL1. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10934 BASE COUNT 369 a 266 c 365 g 298 t 3078 others ORIGIN 1 .......... .......... ......UACG ACUUGACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GUAC-GC-- UG-C-G-C-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAG 121 C--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGG- U-A--UCU-A C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-G-AA U-AA--GAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A---GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------UUU -UCAGU-GUC 1741 GC--AG---- --GG-(A-A- ---A)C-CG- AUAA-ACACA C|C|G-CCU- G-GA-AGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-CG-C AUG--CUACA AUGGC-A-AG -UA--CAAUG AGU-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--GAAA -GC-C-GGUC GUAGUCCGGA 2941 U-UGUUGUC- (UGCAAC-U- C)-GACAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AU. 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR95 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Britschgi,T.B. and Giovannoni,S.J. TITLE Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing JOURNAL Appl. Environ. Microbiol. 57, 1707-1713 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63812 Former RDP Sids: env.clon95 library_source= Sargasso Sea bacterioplankton DNA NB: IDENT: general alpha (no close relatives) BASE COUNT 366 a 264 c 355 g 305 t 3086 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--N ANAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUAC----- -GC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-G-AA U-AA--GAAG ---------G 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UGG---UGGU G-AAA-US-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCAG-UGU 1741 CG--CA---- --GC-(GAA- ---A)S-SA- -UAA-ACACA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-AC-UUG ACA-UG|--- ---------U ---UCGU-C- GCG----ACU 1981 -CUA-A--(- GAGA-)-UUA -G-AGUUU-- UC-------- ---NN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| ACG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUU- 2281 NG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UN|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A GG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAACA GGA-A-G-C- AA-GAC-U(G 2881 -CGA)AGUU- ---------- AA-GCAAA-U CCCU--AAAA -GA-U-ACC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-UAC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-GU)-G CCA-CGGUG- AAUNC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11967 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 92 a 45 c 80 g 73 t 4086 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-A-GUGU G--UG-U... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11940 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 83 a 36 c 71 g 64 t 4122 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGC- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-UAG|U UGA---UGGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUG-----UG A-UA-GAGGA AAG-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA.. ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11982 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA BASE COUNT 75 a 36 c 64 g 61 t 4140 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGC- ACG-UAG-GU -G|-GU-UA- 1261 A-GA-AAG|U UGG---UGGU G-AAA-UC-C CA-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCC-ACCA A-AAC-UUUU U-AACUA-GA GUA-----UG A-UU-GAGGU AAG-C|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-G-- AU-U...... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.49-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11987 library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA BASE COUNT 72 a 32 c 58 g 57 t 4157 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGC- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGA---UGGU G-AAA-UC-C CA-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUG-----UG A-UA-GAGGU AAG-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAA- -C........ .......... .......... .......... 1501 ......U-UA CUGAGU-CGA CU-A------ -------UG- A-CA...... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11943 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 67 a 29 c 56 g 53 t 4171 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGC- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUG-----UG A-UA-GAGGA AAG-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AACA-CCAA- 1441 -A-U-GC(-G AA-G)GCAA- -CUUUCUG.. .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.2 MITOCHONDRIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.2 MITOCHONDRIA. ORGANISM 2.14.1.2.2 MITOCHONDRIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.3 HOLOSPORA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.3 HOLOSPORA_SUBGROUP. ORGANISM 2.14.1.2.3 HOLOSPORA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hls.obtusa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Holospora obtusa.. ACCESSION No information KEYWORDS No information. SOURCE Holospora obtusa. ORGANISM Holospora obtusa. REFERENCE 1 AUTHORS Amman,R., Springer,N., Ludwig,W., Goertz,H-D. and Schleifer ,K-H. TITLE Identification in situ and phylogeny of uncultured bacterial endosymbionts JOURNAL Nature 351, 161-164 (1991) STANDARD No information COMMENTS legacy_attribute= source, W. Ludwig (6.2.93) endosymbiont_of= Paramecium caudatum BASE COUNT 402 a 316 c 446 g 319 t 2893 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-AAAC 121 G--GG----A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --U|-CC--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CUUU---U -GGAG-G-GG 421 -GAC-AA-CC G--------- ------AG-- G(-GAAA-)C -CUUG-G--C UAAUACC-GC 481 AU-AUA---- ---------- ---------- ---------- C--UUA-(-- --------GA 541 AA-------- -)-UAAG--- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----GAAG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--AUUC| UUUU-AC-UC 1021 --GU-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACG-A-GA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U GAG---AUGU U-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-GAG- 1321 -UGCG-UUUC A-AAC-UGGA A-GACUA-GA GUA-----CG G-UA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-UCAG- 1441 -A-G-GC(-G AA-A)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCC--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AC-GU-CAG -CU-U----- ---------- 1681 -(-UA-U-)- ---------- ---------- ---------- --------AA -GUUGG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-AGGACUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUU -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(UCAACA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------G ---GAGU-C- AAC----GAU 1981 -CUU-A--(- GAGA-)-UAA -G-AUUU--- UC-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----GG---| ACU-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUAU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-AG-AGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -GA--CAAAG GGA-A-G-C- GA-CGG-G(G 2881 -AGA)CCCU- ---------- GA-GCGAA-U CCUA--AAAC -GU-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CAC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-UGA- UC-UU-ACCU -GAA-A-CCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CU A-UGGU-GGG GUU-GA-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cae.caryph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caedibacter caryophila str. 221 (T). ACCESSION No information KEYWORDS No information. SOURCE Caedibacter caryophila str. 221 (T). ORGANISM Caedibacter caryophila. REFERENCE 1 AUTHORS Springer,N., Ludwig,W., Amann,R., Schmidt,H.J., Gortz,H.D. and Schleifer,K.H. TITLE Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of Paramecium caudatum JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90, 9892-9895 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71837|g436063 (bases 373 to 1695) endosymbiont_of= Paramecium caudatum isolate_name= 221 (T) BASE COUNT 370 a 333 c 480 g 313 t 2880 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCAUU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GAUGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------UU-- G(-GAAA-)C -GACA-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------C-U GG-------- ---AGA-(-- --------GC 541 C--------- -)-UCU---- ----C----C AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-AA- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCGA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UUUC-AC-CC 1021 --GU-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -U|-GU-UG- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GC-C UC-GGG-C(- UU-A)A-CCC -GA-G-AAC- 1321 -UGCG-UUUG A-UAC-UGGU U-GACUU-GA GGA-----CG A-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-UCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 CUC--GU-AU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AC-GU-UGG -GG-GG---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------CCC -UUCAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------G ---GGAU-U- AUG----GAG 1981 -AGG-A--(- GAGA-)-UUC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-UA-CU-C- U-AAA-GA-A A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG AGG-A-G-C- AA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CUUU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CAC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-UGA- UU-CA-ACCU -UAA-G-GCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-A G-CC-GA-CC A-CGGU-GGG GUC-AA-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.4 RICKETTSIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.4 RICKETTSIA_SUBGROUP. ORGANISM 2.14.1.2.4 RICKETTSIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.conor3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia conorii str. Indian Tick Typhus rickettsia. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia conorii str. Indian Tick Typhus rickettsia. ORGANISM Rickettsia conorii. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE sequencing Phylogenetic analysis of the genus Rickettsia by 16S rDNA JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36107|g535754 (bases 31 to 1444) nat_host= Rhipicephalus sanguineus from India isolate_name= Indian Tick Typhus rickettsia BASE COUNT 377 a 298 c 423 g 316 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.conor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia conorii str. Moroccan. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia conorii str. Moroccan. ORGANISM Rickettsia conorii. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36105|g535752 (bases 40 to 1427) isolate_name= Moroccan BASE COUNT 368 a 292 c 417 g 311 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ....A----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.conori 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia conorii str. IIT-586. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia conorii str. IIT-586. ORGANISM Rickettsia conorii. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12460|g529688 isolate_name= IIT-586 BASE COUNT 384 a 303 c 429 g 320 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spA167 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. A-167. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. A-167. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36100|g535747 (bases 27 to 1448) nat_host= Rhipicephalus pumilio from Astrakhan region; causes Astrakhan fever isolate_name= A-167 BASE COUNT 378 a 300 c 426 g 318 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-GU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spCDC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. ISTT CDC1. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. ISTT CDC1. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Organism information Culture collection: CDC 1 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36223|g538442 nat_host= human from Israel; causes Israeli spotted fever isolate_name= ISTT CDC1 NB: GB entry mislabeled to be Rickettsia sp. str. C9P9 BASE COUNT 383 a 304 c 430 g 323 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.parker 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia parkeri str. Maculatum 20. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia parkeri str. Maculatum 20. ORGANISM Rickettsia parkeri. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36673|g556410 (bases 29 to 1439) nat_host= Amblyomma maculatum from Mississippi isolate_name= Maculatum 20 BASE COUNT 377 a 297 c 421 g 316 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.parke2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia parkeri str. Maculatum-20. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia parkeri str. Maculatum-20. ORGANISM Rickettsia parkeri. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12461|g529689 nat_host= Amblyomma maculatum isolate_name= Maculatum-20 BASE COUNT 388 a 305 c 435 g 320 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CNA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -YGC-A--(- GAGA-)-UGC -U-UUNYU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-G AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAG G(GGA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.sibir2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sibirica str. 246. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sibirica str. 246. ORGANISM Rickettsia sibirica. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12462|g529690 isolate_name= 246 BASE COUNT 383 a 302 c 429 g 322 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-U --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- U-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---GAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.sibir3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sibirica. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sibirica. ORGANISM Rickettsia sibirica. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38628|g717164 BASE COUNT 388 a 308 c 436 g 324 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAAU --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---GAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.sibiri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sibirica str. 246. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sibirica str. 246. ORGANISM Rickettsia sibirica. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36218|g538437 nat_host= Dermacentor nuttali from Ex USSR; causes Siberian tick typhus isolate_name= 246 BASE COUNT 383 a 306 c 430 g 323 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAAU --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---GAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spHA91 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. HA-91. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. HA-91. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36219|g538438 nat_host= Haemophysalis asiaticum from Inner Mongolia isolate_name= HA-91 BASE COUNT 383 a 306 c 430 g 323 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAAU --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---GAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia africae str. ESF-5. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia africae str. ESF-5. ORGANISM Rickettsia africae. REFERENCE 1 AUTHORS Kelly,P.J., Beati,L., Mason,P.R., Mathewman,L.A., Roux,V. and Raoult,D. TITLE Rickettsia africae sp. nov., the etiological agent of African tick bite fever JOURNAL Int. J. Syst. Bacteriol. 46, 611-614 (1996) STANDARD No information REFERENCE 2 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36098|g535745 (bases 38 to 1432) nat_host= Amblyomma variegatum from Shulu Province, Ethiopia isolate_name= ESF-5; Z9-Hu (T) BASE COUNT 371 a 292 c 417 g 315 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ........AC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA UUUUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GUG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spRpcp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. S. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. S. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Eremeeva,M., Balayeva,N., Roux,V., Ignatovich,V., Kotsinjan ,M. and Raoult,D. TITLE Genomic and proteinic characterization of strain S, a Rickettsia isolated from Rhipicephalus sanguineus ticks in Armenia JOURNAL J. Clin. Microbiol. 33, 2738-2744 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25042|g777420 biol_source= ticks geog_source= Armenia nat_host= Rhipicephalus sanguineus (tick) isolate_name= S BASE COUNT 376 a 298 c 423 g 317 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA --UUUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---U -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.slovac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia slovaca str. 13-B. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia slovaca str. 13-B. ORGANISM Rickettsia slovaca. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36224|g538443 nat_host= Dermacentor marginalis from Slovakia isolate_name= 13-B BASE COUNT 384 a 302 c 427 g 319 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.honei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia honei str. JC. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia honei str. JC. ORGANISM Rickettsia honei. REFERENCE 1 AUTHORS Baird,R.W., Stenos,J., Stewart,R., Hudson,B., Lloyd,M., Aiuto ,S. and Dwyer,B. TITLE Geographic variations in Australian Spotted Fever Group Rickettsiae JOURNAL J. Clin. Microbiol. 34, 1526-1530 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17645|g600169 isolate_name= JC BASE COUNT 395 a 319 c 444 g 333 t 2885 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.TT118 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. TT-118. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. TT-118. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36220|g538439 nat_host= Ixodes or Rhipicephalus sp. from Thailand isolate_name= TT-118 BASE COUNT 384 a 305 c 429 g 320 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-GUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.peacck 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia peacockii str. Skalkaho. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia peacockii str. Skalkaho. ORGANISM Rickettsia peacockii. REFERENCE 1 AUTHORS Niebylski,M.L., Schrumpf,M.E., Burgdorfer,W., Fischer,E.R., Gage,K.L. and Schwan,T.G. TITLE Rickettsia peacockii sp. nov., a new species infecting wood ticks, Dermacentor andersoni, in western Montana JOURNAL Int. J. Syst. Bacteriol. 47 (2), 446-452 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U55820|g1777945 isolate_name= Skalkaho NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 307 a 242 c 347 g 261 t 3219 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 C-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGG...... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.ricke3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia rickettsii str. R (Bitterroot). ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rickettsii str. R (Bitterroot). ORGANISM Rickettsia rickettsii. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36217|g538436 nat_host= Dermacentor andersoni from Montana; causes Rocky Mtn spotted fever isolate_name= R (Bitterroot) BASE COUNT 383 a 307 c 429 g 321 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAA-ACG -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-CA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.ricke2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia rickettsii str. Sawtooth. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rickettsii str. Sawtooth. ORGANISM Rickettsia rickettsii. REFERENCE 1 AUTHORS Stothard,D.R., Clark,J.B. and Fuerst,P.A. TITLE fever and typhus groups of Rickettsia, and antiquity of the genus Rickettsia Ancestral divergence of Rickettsia bellii from the spotted JOURNAL Int. J. Syst. Bacteriol. 44, 798-804 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11021|g506787 nat_host= Dermacentor andersonii isolate_name= Sawtooth BASE COUNT 395 a 313 c 440 g 330 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAACUUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-CA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.ricket 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia rickettsii str. R ATCC VR-891 (T). ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rickettsii str. R ATCC VR-891 (T). ORGANISM Rickettsia rickettsii. REFERENCE 1 AUTHORS Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., Mallavia,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-891 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21293 isolate_name= R BASE COUNT 384 a 305 c 422 g 319 t 2946 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAAACUUG AGAGUU(U-N A)N-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CNC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|N CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCN -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-N-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUNUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-CA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-N--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UN-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UAG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.japoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia japonica str. YM. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia japonica str. YM. ORGANISM Rickettsia japonica. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36213|g538432 geog_source= Japan biol_source= human isolate_name= YM BASE COUNT 384 a 305 c 429 g 322 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.montan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia montana str. Ohio 83-441. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia montana str. Ohio 83-441. ORGANISM Rickettsia montana. REFERENCE 1 AUTHORS Stothard,D.R., Ralph,D.A., Clark,J.B., Fuerst,P.A. and Pretzman,C. TITLE Rickettsia amblyommii, sp. nov., isolated from the Lone Star tick, Amblyomma americanum (Ixodidae) JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11016|g506780 nat_host= Dermacentor variabilis isolate_name= Ohio 83-441 BASE COUNT 386 a 308 c 438 g 322 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--GC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GUG----AAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.monta2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia montana. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia montana. ORGANISM Rickettsia montana. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36215|g538434 nat_host= Dermacentor variabilis or D.andersoni from Ohio BASE COUNT 382 a 306 c 431 g 321 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--GC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GUG----AAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.massi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia massiliae str. Mtu1. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia massiliae str. Mtu1. ORGANISM Rickettsia massiliae. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36214|g538433 nat_host= Rhipicephalus turanicus from Camargue, France isolate_name= Mtu1 BASE COUNT 384 a 305 c 429 g 322 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.massil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia massiliae str. GS. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia massiliae str. GS. ORGANISM Rickettsia massiliae. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36106|g535753 (bases 27 to 1440) nat_host= Rhipicephalus sanguineus from Greece isolate_name= GS BASE COUNT 378 a 297 c 422 g 317 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.Bar29 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. Bar 29. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. Bar 29. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36102|g535749 (bases 13 to 1444) nat_host= Rhipicephalus sanguineus from Spain isolate_name= Bar 29 BASE COUNT 384 a 302 c 427 g 319 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.aeschl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia aeschlimanni str. Mc16. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia aeschlimanni str. Mc16. ORGANISM Rickettsia aeschlimanni. REFERENCE 1 AUTHORS Roux,V., Rydkina,E., Eremeeva,M. and Raoult,D. TITLE Citrate synthase gene comparison a new tool for phylogenetic analysis, the rickettsia paradigm JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U74757|g1658284 isolate_name= Mc16 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 381 a 303 c 426 g 318 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UAUC-GGU-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-UGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.rhicp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia rhipicephali str. 3-7-6. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rhipicephali str. 3-7-6. ORGANISM Rickettsia rhipicephali. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36216|g538435 nat_host= Rhipicephalus sanguineus from Mississippi isolate_name= 3-7-6 BASE COUNT 385 a 307 c 428 g 320 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUA-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UAA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.rhicph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia rhipicephali.. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia rhipicephali. ORGANISM Rickettsia rhipicephali. REFERENCE 1 AUTHORS Stothard,D.R., Ralph,D.A., Clark,J.B., Fuerst,P.A. and Pretzman,C. TITLE Rickettsia amblyommii, sp. nov., isolated from the Lone Star tick, Amblyomma americanum (Ixodidae) JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11019|g506784 nat_host= Rhipicephalus sanguineus BASE COUNT 390 a 306 c 433 g 322 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-AU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUA-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUNU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.amblyo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia amblyommii str. MO 85-1084. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia amblyommii str. MO 85-1084. ORGANISM Rickettsia amblyommii. REFERENCE 1 AUTHORS Stothard,D.R., Ralph,D.A., Clark,J.B., Fuerst,P.A. and Pretzman,C. TITLE Rickettsia amblyommii, sp. nov., isolated from the Lone Star tick, Amblyomma americanum (Ixodidae) JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11012|g506775 nat_host= Amblyomma americanum isolate_name= MO 85-1084 BASE COUNT 392 a 306 c 432 g 322 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGGG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUA AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --AC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUUCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGYUCUC- (UGCAAC-U- C)-GAGAGCA -URAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.helvet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia helvetica str. C9P9. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia helvetica str. C9P9. ORGANISM Rickettsia helvetica. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36212|g538431 nat_host= Ixodes ricinus from Switzerland isolate_name= C9P9 BASE COUNT 387 a 306 c 426 g 321 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -AAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)UU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-U-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-AU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCA|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spflea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. ELB agent. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. ELB agent. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Schriefer,M.E., Sacci,J.B., Jr., Dumler,S.J., Bullen,M.G. and Azad,A.F. TITLE Identification of a novel rickettsial agent infection in a patient diagnosed with murine typhus JOURNAL J. Clin. Microbiol. 32, 949-954 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L28944|g455353 cell_type= flea midgut cell isolate_name= ELB agent BASE COUNT 375 a 304 c 418 g 311 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.akari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia akari str. Hartford. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia akari str. Hartford. ORGANISM Rickettsia akari. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12458|g529686 nat_host= Allodermanyssus sanguineus isolate_name= Hartford BASE COUNT 384 a 304 c 440 g 324 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUGA ---UUGG-GG (--UU----- ---------- ---------- 241 --------UU -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-GA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-GU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--GA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CU-UUG ACA-UG|--- ---------G ---UGGU-U- GCR----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UAA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.akari2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia akari str. MK (Kaplan). ACCESSION No information KEYWORDS No information. SOURCE Rickettsia akari str. MK (Kaplan). ORGANISM Rickettsia akari. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36099|g535746 (bases 27 to 1440) nat_host= human from NewYork City; causes Rickettsialpox isolate_name= MK (Kaplan) BASE COUNT 372 a 295 c 429 g 318 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUGA ---UUGG-GG (--UU----- ---------- ---------- 241 --------UU -)CU-CCAG- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-GA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-GU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CU-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UAA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.austr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia australis str. RHS. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia australis str. RHS. ORGANISM Rickettsia australis. REFERENCE 1 AUTHORS Baird,R.W., Stenos,J., Stewart,R., Hudson,B., Lloyd,M., Aiuto,S. and Dwyer,B. TITLE Geographic variations in Australian Spotted Fever Group Rickettsiae JOURNAL J. Clin. Microbiol. 34, 1526-1530 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17644|g600168 isolate_name= RHS BASE COUNT 394 a 316 c 447 g 334 t 2885 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--UU----- ---------- ---------- 241 --------UA -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UGG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGAC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-GU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.austr3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia australis str. Phillips. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia australis str. Phillips. ORGANISM Rickettsia australis. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36101|g535748 (bases 27 to 1441) nat_host= human from Queensland, Australia;causes Queensland tick typhus isolate_name= Phillips BASE COUNT 376 a 298 c 425 g 316 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--GUU---- ---------- ---------- 241 --------UA -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.austrl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia australis str. Phillips. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia australis str. Phillips. ORGANISM Rickettsia australis. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12459|g529687 nat_host= Ixodes sp. isolate_name= Phillips BASE COUNT 386 a 309 c 436 g 322 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--GUU---- ---------- ---------- 241 --------UA -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CAA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UNCC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-CCGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.canada 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia canada str. McKeil. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia canada str. McKeil. ORGANISM Rickettsia canada. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15162|g555998 nat_host= Haemaphysalis leporispalustris isolate_name= McKeil BASE COUNT 397 a 305 c 429 g 322 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUAG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UGUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -UCAUCUA-- ---------- ---------- ---------G 1501 GCU--AU-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -GA-GA---- ---------- 1681 -(-AU-A-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AN CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-AAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.canad2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia canada str. 2678. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia canada str. 2678. ORGANISM Rickettsia canada. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36104|g535751 (bases 27 to 1440) nat_host= Haemophysalis leporispalustris from Canada isolate_name= 2678 BASE COUNT 386 a 295 c 417 g 316 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUAG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UGUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -UCAUCUA-- ---------- ---------- ---------G 1501 GCU--AU-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -GA-GA---- ---------- 1681 -(-AU-A-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-AAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.Adalbi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp.. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Werren,J.H., Hurst,G.D., Zhang,W., Breeuwer,J.A., Stouthamer ,R. and Majerus,M.E. TITLE Rickettsial relative associated with male killing in the Ladybird beetle (Adalia bipunctata) JOURNAL J. Bacteriol. 176, 388-394 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04163|g450812 nat_host= Adalia bipunctata NB: GB U04163 had 40 n's removed from 5' end of submitted sequence BASE COUNT 382 a 308 c 424 g 321 t 2941 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-AAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-C C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-CGN-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------U 1141 -CCCGNCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 NCU--AC-AA CUGACG-CUN AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CG- -GA-GA---- ---------- 1681 -(-AU-C-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCA|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- --A-G-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-GCA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.bellii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia bellii str. strains 369-C and G2D42. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia bellii str. strains 369-C and G2D42. ORGANISM Rickettsia bellii. REFERENCE 1 AUTHORS Clark,J.B. TITLE A molecular analysis of the intracellular bacteria Rickettsiae JOURNAL Thesis, Department of Molecular Genetics, The Ohio State University (1990) STANDARD No information REFERENCE 2 AUTHORS Stothard,D.R., Clark,J.B. and Fuerst,P.A. TITLE Ancestral divergence of Rickettsia bellii from the spotted fever and typhus groups of Rickettsia, and antiquity of the genus Rickettsia JOURNAL Int. J. Syst. Bacteriol. 44, 798-804 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11014|g506778 nat_host= Dermacentor variabilis isolate_name= strains 369-C and G2D42 NB: sequences from the two strains are identical BASE COUNT 397 a 321 c 447 g 336 t 2875 others ORIGIN 1 .......... .......... .......... .UCAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-UGG -GA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.belli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia bellii str. 369L42-1. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia bellii str. 369L42-1. ORGANISM Rickettsia bellii. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36103|g535750 (bases 27 to 1440) nat_host= Dermacentor variabilis from Ohio isolate_name= 369L42-1 BASE COUNT 376 a 299 c 423 g 316 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-UGG -GA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.spPAR 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia sp. str. PAR. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia sp. str. PAR. ORGANISM Rickettsia sp. REFERENCE 1 AUTHORS Chen,D., Campbell,B.C. and Purcell,A.H. TITLE A new rickettsia from pea aphid, Acyrthosiphon pisum (Harris ) JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42084|g1147763 isolate_name= PAR BASE COUNT 388 a 309 c 436 g 325 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------CUAA ---UUGG-GG (--UU----- ---------- ---------- 241 --------UG -)CU-CCAA- --UUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-UGG -GA-GA---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UCU -CUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG--A| CCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -AA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.pro.MadE 4376 bp RNA RNA 11-NOV-1998 DEFINITION Rickettsia prowazekii. str. Madrid E, complete genome; complete genome. ACCESSION AJ2352 2 AJ23 269 KEYWORDS complete genome. SOURCE Rickettsia prowazekii. str. Madrid E, complete genome. ORGANISM Rickettsia prowazekii. REFERENCE 1 (bases 1 to 279110) AUTHORS Eriksson,A.S., Winkler,H.H. and Kurland,C.G. Andersson,S.G., Zomorodipour,A., Andersson,J.O., Sicheritz-Ponten,T., Alsmark,U.C., Podowski,R.M., Naslund,A.K., TITLE mitochondria The genome sequence of Rickettsia prowazekii and the origin of JOURNAL Nature 396 (6707), 133-140 (1998) STANDARD No information REFERENCE 2 (bases 1 to 279110) AUTHORS Andersson,S.G.E. TITLE Direct Submission JOURNAL Submitted (11-NOV-1998) S.G.E. Andersson, Siv. Andersson@molbio.uu. se, Dept. of Molecular Biology, University of Uppsala, Husargatan 3, Uppsala, S-751 24, SWEDEN STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AJ235272 BASE COUNT 410 a 315 c 448 g 344 t 2859 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~aa aacugacaga AUCAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---CUAG-AG (--CU----- ---------- ---------- 241 --------CG -)CU-UUAG- --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AG-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- ACG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-UGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C- UGCGGC--UG GAUUACCUCC 3361 UUAa|aga~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.prowaz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia prowazekii str. Breinl ATCC VR-142 (alpha purple bacterium). ACCESSION No information KEYWORDS No information. SOURCE Rickettsia prowazekii str. Breinl ATCC VR-142 (alpha purple bacterium). ORGANISM Rickettsia prowazekii. REFERENCE 1 AUTHORS Mallavia,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-142 (alpha purple bacterium) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21789 isolate_name= Breinl common_name= alpha purple bacterium BASE COUNT 400 a 314 c 445 g 343 t 2874 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ AUCAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---CUAG-AG (--CU----- ---------- ---------- 241 --------CG -)CU-UUAG- --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AG-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- ACG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-UGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUUACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.typhi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia typhi str. Wilmington. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia typhi str. Wilmington. ORGANISM Rickettsia typhi. REFERENCE 1 AUTHORS Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., Mallavia ,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20499 isolate_name= Wilmington BASE COUNT 356 a 277 c 381 g 306 t 3056 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNCAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---UUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAG- --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......AU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AG-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- AUG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.typhi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia typhi str. Wilmington. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia typhi str. Wilmington. ORGANISM Rickettsia typhi. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36221|g538440 nat_host= human from North Carolina; causes murine typhus isolate_name= Wilmington BASE COUNT 383 a 299 c 429 g 329 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---UUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAG- --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AG-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- AUG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ric.typhi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rickettsia typhi str. Wilmington. ACCESSION No information KEYWORDS No information. SOURCE Rickettsia typhi str. Wilmington. ORGANISM Rickettsia typhi. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Evolutionary analysis of the Spotted Fever and thyphus [sic] groups of Rickettsia using 16S rRNA gene sequences JOURNAL Syst. Appl. Microbiol. 18, 52-61 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12463|g529691 nat_host= Pulex irritans isolate_name= Wilmington BASE COUNT 388 a 301 c 435 g 330 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAUC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA ---UUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAG- --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-A C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CU U--------- ------UU-- A(-GAAA-)U -AAAA-G--C UAAUACC-GU 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GA-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CUU-G-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UGG---AAGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCU-UUCA A-AAC-UACU A-AUCUA-GA GUG-----UA G-UA-GGGGA UGA-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -UU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-AU-CGG -AG-GA---- ---------- 1681 -(-UU-C-)- ---------- ---------- ---------- -------UCU -UUCGG-UUU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGUUA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---UGGU-U- AUG----GAU 1981 -UGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AAG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-G-UU -UA--CAGAG GGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-AA-CC A-CGGU-AAA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.5 ORIENTIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.5 ORIENTIA_SUBGROUP. ORGANISM 2.14.1.2.5 ORIENTIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Kawasaki. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Kawasaki. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38625|g717169 Former RDP Sids: Ric.tsuts9 isolate_name= Kawasaki NB: former name Rickettsia tsutsugamushi BASE COUNT 395 a 300 c 431 g 333 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 UA-A------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UUUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- AA-UAC-G(G 2881 -UAA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsut10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Shimokoshi. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Shimokoshi. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38627|g717170 Former RDP Sids: Ric.tsut10 isolate_name= Shimokoshi NB: former name Rickettsia tsutsugamushi BASE COUNT 393 a 301 c 434 g 331 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UCAG --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGUA --UUGA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GUC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 CA-A------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U UAG---GAGU G-AAA-UA-C CA-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-AGCUA-GA GUG-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GA-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------A ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACU-AU-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GA-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Kato. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Kato. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38624|g717168 Former RDP Sids: Ric.tsuts8 isolate_name= Kato NB: former name Rickettsia tsutsugamushi BASE COUNT 393 a 300 c 434 g 332 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUG-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAA UGA-U-G-C- AA-UAC-G(G 2881 -UAA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Kato. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Kato. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Ribosomal RNA sequence analysis of Rickettsia tsutsugamushi: a highly divergent member of a monophyletic genus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17258|g596029 Former RDP Sids: Ric.tsuts4 nat_host= Leptotrombidium sp. isolate_name= Kato NB: former name Rickettsia tsutsugamushi BASE COUNT 393 a 301 c 433 g 331 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CNUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUG-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- CCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAA UGA-U-G-C- AA-UAC-G(G 2881 -UAA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Karp. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Karp. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Tamura,A., Ohashi,N., Urakami,H. and Miyamura,S. TITLE Classification of Rickettsia tsutsugamushi in a new genus, Orientia gen. nov., as Orientia tsutsugamushi comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 589-591 (1995) STANDARD No information REFERENCE 2 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38623|g717166 Former RDP Sids: Ric.tsuts6 isolate_name= Karp NB: former name Rickettsia tsutsugamushi BASE COUNT 391 a 300 c 436 g 332 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Karp. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Karp. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Tamura,A., Ohashi,N., Urakami,H. and Miyamura,S. TITLE Classification of Rickettsia tsutsugamushi in a new genus, Orientia gen. nov., as Orientia tsutsugamushi comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 589-591 (1995) STANDARD No information REFERENCE 2 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Ribosomal RNA sequence analysis of Rickettsia tsutsugamushi: a highly divergent member of a monophyletic genus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17257|g596028 Former RDP Sids: Ric.tsuts3 nat_host= Leptotrombidium sp. isolate_name= Karp NB: former name Rickettsia tsutsugamushi BASE COUNT 389 a 297 c 434 g 331 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAC 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GANAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CNUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Kuroki. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Kuroki. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38626|g717167 Former RDP Sids: Ric.tsuts7 isolate_name= Kuroki NB: former name Rickettsia tsutsugamushi BASE COUNT 391 a 299 c 436 g 333 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGCA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAU 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGA UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsutsu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Gilliam. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Gilliam. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Roux,V. and Raoult,D. TITLE Phylogenetic analysis of the genus Rickettsia by 16S rDNA sequencing JOURNAL Res. Microbiol. 146, 385-396 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36222|g538441 Former RDP Sids: Ric.tsutsu nat_host= human from Japan; causes scrub typhus isolate_name= Gilliam NB: former name Rickettsia tsutsugamushi BASE COUNT 388 a 294 c 432 g 334 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-UAGUA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAU 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGG UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Gilliam. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Gilliam. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Stothard,D.R. and Fuerst,P.A. TITLE Ribosomal RNA sequence analysis of Rickettsia tsutsugamushi: a highly divergent member of a monophyletic genus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17256|g596027 Former RDP Sids: Ric.tsuts2 nat_host= Leptotrombidium sp. isolate_name= Gilliam NB: former name Rickettsia tsutsugamushi BASE COUNT 391 a 296 c 434 g 335 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-UAGUA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAU 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CNUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGG UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ort.tsuts5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Orientia tsutsugamushi str. Gilliam. ACCESSION No information KEYWORDS No information. SOURCE Orientia tsutsugamushi str. Gilliam. ORGANISM Orientia tsutsugamushi. REFERENCE 1 AUTHORS Ohashi,N., Fukuhara,M., Shimada,M. and Tamura,A. TITLE Phylogenetic position of Rickettsia tsutsugamushi and the relationship among its antigenic variants by analyses of 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 125, 299-304 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38622|g717165 Former RDP Sids: Ric.tsuts5 isolate_name= Gilliam NB: former name Rickettsia tsutsugamushi BASE COUNT 391 a 297 c 436 g 335 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAA --UGCUG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-UAGUA --UUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CCAU---C -AGUA-C-GG 421 -AAU-AA-CA U--------- ------UU-- A(-GAAA-)U -AAGU-G--C UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---CUC-(-- -------UAU 541 AA-G------ -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GCC-UG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AG-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U UAG---GAGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCC -UG-G-AAC- 1321 -UGCU-UCUA A-AAC-UGUU A-GGCUA-GA GUA-----UG G-UA-GAGGG UGA-U|GGAA 1381 UU-UCUAGU- GUA-GAG(-G UAAAA)-UUC -UU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCUG- -UCAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA --GUG-CU-- -------A|G -AU-AU-UGG -GG-GA---- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- -------UCU -UUCAG-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGAUC-C G)--CGAAAA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UG|--- ---------G ---UAGU-C- GCG----AAA 1981 -AAU-G--(- GAGA-)-CAU -U-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| ACU-AC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-A- U-AGG-AA-A A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CG-C GUG--CUACA AUGGU-A-CC -UA--CAGAG UGA-U-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CAUU--AAAA -GG-U-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-GCA--- --CCA-UGGG A--GU-CAG- UG-GU-ACCU -GAA-G-UUG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CU-AA-CC A-CGGU-AGA ACU-GG-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.6 ENVIRONMENTAL_CLONE_6811. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.6 ENVIRONMENTAL_CLONE_6811. ORGANISM 2.14.1.2.6 ENVIRONMENTAL_CLONE_6811. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.6811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 6811.. ACCESSION No information KEYWORDS No information. SOURCE clone 6811. ORGANISM clone 6811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89333 BASE COUNT 56 a 45 c 69 g 47 t 4159 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ...AUUA-G- CUA-G---UU 721 GG-CG-AG-( GU-AAU-GG) -C-CU-CC-A A|-GUC-GN- -GA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-AG --)GG-UUGU AAA--GCUG| UUUU-AC-CA 1021 --GG-CAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GC-CCGC- A-C....... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.7 EHR.RISTICII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.7 EHR.RISTICII_SUBGROUP. ORGANISM 2.14.1.2.7 EHR.RISTICII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.ristic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia risticii str. Illinois ATCC VR-986 (alpha purple bacterium). ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia risticii str. Illinois ATCC VR-986 (alpha purple bacterium). ORGANISM Ehrlichia risticii. REFERENCE 1 AUTHORS Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., Mallavia,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-986 (alpha purple bacterium) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21290 isolate_name= Illinois common_name= alpha purple bacterium BASE COUNT 382 a 322 c 456 g 338 t 2878 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUGAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAGGGC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GCCUU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--C CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-G C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--G CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AA-G-AAC- 1321 -UGCA-UUUA A-AAC-UGUG G-GACUC-GA ACG-----UG A-GA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-U- GUA----UCC 1981 -CUC-U--(- GAAG-)-GGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG AGCUA-G-C- UA-CAC-C(G 2881 -UAA)GGUG- ---------- AC-GCCAA-U CUCUU-AAAG -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(UGA-A)CC UGCGGC--UG GAUUACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.risKEN 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia risticii str. Kentucky isolate. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia risticii str. Kentucky isolate. ORGANISM Ehrlichia risticii. REFERENCE 1 AUTHORS Wen,B., Rikihisa,Y., Fuerst,P.A. and Chaichanasiriwithaya,W . TITLE Diversity of 16S rRNA genes of new Ehrlichia strains isolated from horses with clinical signs of Potomac horse fever JOURNAL Int. J. Syst. Bacteriol. 45, 315-318 (1995) STANDARD No information COMMENTS isolate_name= Kentucky isolate NB: data hand entered from paper seq. longer than it should be BASE COUNT 385 a 321 c 454 g 338 t 2878 others ORIGIN 1 .......... .......... .......... ..CUGAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAGGGC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GCCUU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--A CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-A C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--G CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AA-G-AAC- 1321 -UGCA-UUUA A-AAC-UGUG G-GACUC-GA ACG-----UG A-GA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-C- GUA----UCC 1981 -CUC-U--(- GAAG-)-GGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG AGCUA-G-C- UA-CAC-U(G 2881 -UAA)GGUG- ---------- AC-GCCAA-U CUCUU-AAAA -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(UGA-A)CC UGCGGC--UG GAUUACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.spStel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia sp.. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia sp. ORGANISM Ehrlichia sp. REFERENCE 1 AUTHORS Wen,B., Rikihisa,Y., Yamamoto,S., Kawabata,N. and Fuerst,P.A . TITLE Characterization of the SF agent, an Ehrlichia sp. isolated from the fluke Stellantchasmus falcatus, by 16S rRNA base sequence, serological, and morphological analysis JOURNAL Int. J. Syst. Bacteriol. 46, 149-154 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34280|g1002823 nat_host= Stellantchasmus falcatus (fluke) BASE COUNT 375 a 308 c 433 g 319 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CAU|-G 61 GCUCAG-AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAAGGC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GCUUU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--C CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-G C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--A CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AA-G-AAC- 1321 -UGCA-UUUA A-AAC-UGUG G-GACUC-GA ACG-----UG A-UA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-C- GUA----UCC 1981 -CUC-U--(- GAAG-)-GGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG AGCUA-G-C- UA-CAC-C(G 2881 -CAA)GGUG- ---------- AU-GCCAA-U CUCUU-AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U---AAG... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.ris081 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia risticii str. Ohio isolate 081. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia risticii str. Ohio isolate 081. ORGANISM Ehrlichia risticii. REFERENCE 1 AUTHORS Wen,B., Rikihisa,Y., Fuerst,P.A. and Chaichanasiriwithaya,W . TITLE Diversity of 16S rRNA genes of new Ehrlichia strains isolated from horses with clinical signs of Potomac horse fever JOURNAL Int. J. Syst. Bacteriol. 45, 315-318 (1995) STANDARD No information COMMENTS isolate_name= Ohio isolate 081 NB: data hand entered from paper seq. longer than it should be BASE COUNT 386 a 321 c 451 g 340 t 2878 others ORIGIN 1 .......... .......... .......... ..CUGAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAAAGC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GCUUC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--C CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-G C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--G CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AA-G-AAC- 1321 -UGCA-UUUA A-AAC-UGUG G-GACUC-GA ACG-----UG A-UA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-C- GUA----UCC 1981 -CUC-U--(- GAAG-)-AGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG AGCUA-G-C- UA-CAC-U(G 2881 -UAA)GGUG- ---------- AU-GCCAA-U CUCUU-AAAA -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(UGA-A)CC UGCGGC--UG GAUUACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.senne8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia sennetsu str. 11908. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia sennetsu str. 11908. ORGANISM Ehrlichia sennetsu. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73225 geog_source= Malaysia isolate_name= 11908 BASE COUNT 367 a 308 c 435 g 314 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAAAGC-UG (--CU----- ---------- ---------- 241 --------UG C)CA-GCUU- GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--C CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-G C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--G CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AG-G-AAC- 1321 -UGCA-UUUA A-AAC-UGCG G-GACUC-GA ACG-----UG A-GA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-C- GUA----UCC 1981 -CUC-U--(- GAAG-)-GGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG GGCUA-G-C- UA-CAC-C(G 2881 -UAA)GGUG- ---------- AU-GCAAA-U CUCCU-AAAA -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.sennet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia sennetsu str. Miyayama. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia sennetsu str. Miyayama. ORGANISM Ehrlichia sennetsu. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73219 geog_source= Japan isolate_name= Miyayama BASE COUNT 352 a 296 c 422 g 307 t 2999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ....A-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UCAAAGC-UG (--CU----- ---------- ---------- 241 --------UG C)CA-GCUU- GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--C CGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-G C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------GU-- G(-GAAA-)C -AUUG-G--G CAACACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---A------ ---------- 601 --(------- ---UUUAU-- ---)------ ---------| --------U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CC- 1261 C-GU-AAG|U UAG---GUGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AG-G-AAC- 1321 -UGCA-UUUA A-AAC-UGCG G-GACUC-GA ACG-----UG A-GA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AC-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AUA-CC-UUG ACA-UG|--- ---------U ---GGAU-C- GUA----UCC 1981 -CUC-U--(- GAAG-)-GGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-CA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -AU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AC -UA--CAAUG GGCUA-G-C- UA-CAC-C(G 2881 -UAA)GGUG- ---------- AU-GCAAA-U CUCCU-AAAA -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AGG--- --CCA-UGGG A--GU-UCA- UC-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CGGU-GGG GUG-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nric.helmn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neorickettsia helminthoeca.. ACCESSION No information KEYWORDS No information. SOURCE Neorickettsia helminthoeca. ORGANISM Neorickettsia helminthoeca. REFERENCE 1 AUTHORS Pretzman,C., Ralph,D., Stothard,D.R., Fuerst,P.A. and Rikihisa,Y. TITLE 16S rRNA gene sequence of Neorickettsia helminthoeca and its phylogenetic alignment with members of the genus Ehrlichia JOURNAL Int. J. Syst. Bacteriol. 45, 207-211 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12457|g529685 legacy_attribute= lab_host=Canis domesticus; specific_host=Nanophyetus salmincola BASE COUNT 388 a 299 c 427 g 325 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UAGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-C--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUUUGAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GCUGA AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GU--C AGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CUU-A C-CUGG---U -AGUA-G-GG 421 -AAU-AA-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--G UAAUACU-CU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UC 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUA---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUNN-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-AGAAUUA -CU-GGGC|G UAAA-GGGN- NCG-UAG-GC -G|-GU-CU- 1261 C-GU-AAG|U UAG---NNGU G-AAA-UG-G NN-NNG-C(- UU-A)A-CCU -GA-G-AAC- 1321 -UGCA-UUUA A-AAC-UGCG A-GACUC-GA ACG-----UG A-GA-GAGGG CAA-U|GGAA 1381 UU-UUUGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AAGAGG- AACG-UCAG- 1441 -G-G-GC(-G AA-A)GCGA- -UUGCCUG-- ---------- ---------- ---------G 1501 AUC--AU-AG UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|A -AA-GU-GGG -U-------- ---------- 1681 -(UAU-UU)U ---------- ---------- ---------- ---------- -AUCUG-CUU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-UC--G 1861 C-A--CA-AG CCGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACA-CC-UUG ACA-UG|--- ---------U ---NNNN-U- GUA----UCU 1981 -CCC-U--(- GAAG-)-GGG -G-AGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UA-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AGG-GA-A A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GU -GU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AU -UA--CAAUG AGCUA-G-C- UA-UAC-U(G 2881 -CAA)GGUA- ---------- AC-GCAAA-U CUUUG-AAAA -GU-U-GUC- UCAGUACGGA 2941 U-UGCCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-AAG--- --CCA-UGGA A--GU-UUA- UU-UU-ACUC -GAA-G-CUA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AU-CU A-CAGU-GGG AUA-AG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAG G(UGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.8 EHRLICHIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.8 EHRLICHIA_SUBGROUP. ORGANISM 2.14.1.2.8 EHRLICHIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.canisF 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia canis str. Florida. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia canis str. Florida. ORGANISM Ehrlichia canis. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73226 isolate_name= Florida BASE COUNT 399 a 284 c 412 g 338 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----CAAUUA UUUAUAG-CC (--UC----- ---------- ---------- 241 --------U- -)GG-CUAUA GGAAAUUG-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------CG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUA---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAC-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGAAAC-U- U)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia canis str. Oklahoma. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia canis str. Oklahoma. ORGANISM Ehrlichia canis. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73221 isolate_name= Oklahoma BASE COUNT 399 a 285 c 412 g 337 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----CAAUUA UUUAUAG-CC (--UC----- ---------- ---------- 241 --------U- -)GG-CUAUA GGAAAUUG-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------CG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUA---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAC-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGAAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.canis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia canis str. 611. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia canis str. 611. ORGANISM Ehrlichia canis. REFERENCE 1 AUTHORS Keysary,A., Waner,T., Rosner,M., Warner,C.K., Dawson,J.E., Zass,R., Biggie,K.L. and Harrus,S. TITLE The first isolation, in vitro propagation, and genetic characterization of Ehrlichia canis from a dog in Israel JOURNAL Vet. Parasitol. 62, 331-340 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26740 nat_host= Canis familiaris (beagle) isolate_name= 611 BASE COUNT 369 a 256 c 373 g 309 t 3069 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----CAAUUA UUUAUAG-CC (--UC----- ---------- ---------- 241 --------U- -)GG-CUAUA GGAAAUUG-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------CG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-S CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAC-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CCC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGAAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AC)-A CCA-CGGUG- AAUAC-GUU- CUC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.muris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia muris str. AS145 (T) ATCC VR-1411. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia muris str. AS145 (T) ATCC VR-1411. ORGANISM Ehrlichia muris. REFERENCE 1 AUTHORS Wen,B., Rikihisa,Y., Mott,J., Fuerst,P.A., Kawahara,M. and Suto,C. TITLE Ehrlichia muris sp. nov., identified on the basis of 16S rRNA base sequences and serological, morphological, and biological characteristics JOURNAL Int. J. Syst. Bacteriol. 45, 250-254 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-1411 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15527|g558447 nat_host= Eothenomys kageus (wild mouse from Japan) isolate_name= AS145 (T) BASE COUNT 396 a 289 c 406 g 337 t 2948 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---UA-GCUA CCCAUAG-CU (--UU----- ---------- ---------- 241 -------UUU -)AG-CUAUA GGUUCGCUA- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GAUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAC-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.chaff2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia chaffeensis str. 91HE17. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia chaffeensis str. 91HE17. ORGANISM Ehrlichia chaffeensis. REFERENCE 1 AUTHORS Dumler,J.S., Chen,S.-M., Asanovich,K., Trigiani,E., Popov,V .L. and Walker,D.H. TITLE Isolation and characterization of a new strain of Ehrlichia chaffeensis from a patient with nearly fatal monocytic ehrlichiosis JOURNAL J. Clin. Microbiol. 33, 1704-1711 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23503|g755877 legacy_attribute= lab_host=Canis familiaris isolate_name= 91HE17 BASE COUNT 400 a 285 c 410 g 340 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----CAAUUG CUUAUAA-CC (--UU----- ---------- ---------- 241 --------UU -)GG-UUAUA AAUAAUUG-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GAUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AGG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAU-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.chaffe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia chaffeensis str. Arkansas. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia chaffeensis str. Arkansas. ORGANISM Ehrlichia chaffeensis. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73222 isolate_name= Arkansas BASE COUNT 400 a 285 c 408 g 341 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ----CAAUUG CUUAUAA-CC (--UU----- ---------- ---------- 241 --------UU -)GG-UUAUA AAUAAUUG-- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GAUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AGG-C(- UU-A)A-CUU -UG-G-AGC- 1321 -GGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUC-C--(- UAAU-)-AGG -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.ewingi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia ewingii str. Stillwater. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia ewingii str. Stillwater. ORGANISM Ehrlichia ewingii. REFERENCE 1 AUTHORS Anderson,I.E., Greene,G.E., Jones,D.C. and Dawson,J.E. TITLE Ehrlichia ewingii sp. nov., the etiologic agent of canine granulocytic ehrlichiosis JOURNAL Int. J. Syst. Bacteriol. 42, 299-302 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73227 isolate_name= Stillwater BASE COUNT 403 a 286 c 407 g 339 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC--U--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---CAAUU-C CUAAAUA-GU (--CU----- ---------- ---------- 241 -------CUG -)AC-UAUUU AGAUAGUUG- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CC A--------- ------UU-- A(-GAAA-)U -GAUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UC-A)A-CUU -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUU-U--(- UAAC-)-AGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AAUC-AG CAC-G-GC-C CUUAU-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCAU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cow.rumina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cowdria ruminantium str. Crystal Springs (Zimbabwe) isolate. ACCESSION No information KEYWORDS No information. SOURCE Cowdria ruminantium str. Crystal Springs (Zimbabwe) isolate. ORGANISM Cowdria ruminantium. REFERENCE 1 AUTHORS Dame,J.B., Mahan,S.M. and Yowell,C.A. TITLE Phylogenetic relationship of Cowdria ruminantium, agent of heartwater to anaplasma marginale and other rickettsiales determined from 16S rRNA sequence JOURNAL Int. J. Syst. Bacteriol. 42, 270-274 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61659 isolate_name= Crystal Springs (Zimbabwe) isolate BASE COUNT 413 a 299 c 434 g 363 t 2867 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UCAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CAGUU AUUUAUA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UAUGA GUAUCUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CU A--------- ------UU-- A(-GAAA-)U -GAUA-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUU-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--AAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UC-A)A-CUU -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUU-U--(- UAAC-)-CGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCAA--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)CC UGCGGC--UG GAUUACCUCC 3361 UUUU|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cow.rumin4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cowdria ruminantium str. Ball3. ACCESSION No information KEYWORDS No information. SOURCE Cowdria ruminantium str. Ball3. ORGANISM Cowdria ruminantium. REFERENCE 1 AUTHORS Visser,E.S. and Allsopp,B.A. TITLE Genetic heterogeneity of the causative agent of heartwater JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U03777|g433133 (bases 1 to 1489) isolate_name= Ball3 BASE COUNT 412 a 295 c 428 g 354 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... C)G-ACU|-U 61 AAUAAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CAGUU AUUUAUA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UAUAA GUAUCUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CU A--------- ------UU-- A(-GAAA-)U -GAUA-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GC--UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUU-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--AAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UC-A)A-CUU -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUU-U--(- UAAC-)-CGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCAA--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cow.rumin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cowdria ruminantium str. d from Senegal stock. ACCESSION No information KEYWORDS No information. SOURCE Cowdria ruminantium str. d from Senegal stock. ORGANISM Cowdria ruminantium. REFERENCE 1 AUTHORS Van Vliet,A.H., Jongejan,F. and der Zeijst,B.A. TITLE Phylogenetic position of Cowdria ruminantium (Rickettsiales) determined by analysis of amplified 16S ribosomal DNA sequences. JOURNAL Int. J. Syst. Bacteriol. 42, 494-498 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62432 (bases 1 to 1457) isolate_name= d from Senegal stock BASE COUNT 405 a 286 c 421 g 345 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CAGUU AUUUAUA-GC (--CU----- ---------- ---------- 241 --------UG -)GC-UAUAA GUAUCUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CU A--------- ------UU-- A(-GAAA-)U -GAUA-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUU-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--AAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-AAG-C(- UC-A)A-CUU -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUU-U--(- UAAC-)-CGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCAA--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cow.rumin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cowdria ruminantium str. Omatjenne. ACCESSION No information KEYWORDS No information. SOURCE Cowdria ruminantium str. Omatjenne. ORGANISM Cowdria ruminantium. REFERENCE 1 AUTHORS Visser,E.S. and Allsopp,B.A. TITLE Genetic heterogeneity of the causative agent of heartwater JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U03776|g433132 (bases 1 to 1490) isolate_name= Omatjenne BASE COUNT 410 a 296 c 430 g 354 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... C)G-ACU|-U 61 AAUAAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----CAGUU GUUUAUA-GC (--CU----- ---------- ---------- 241 --------CG -)GU-UAUAA GUAUCUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUA-U-GG 421 -AAU-AG-CU A--------- ------UU-- A(-GAAA-)U -GAUA-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UUUU-AA-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-UA G-AA--AAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-UAG-GU -G|-GA-CU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UA-C CA-GAG-C(- UC-A)A-CUU -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCU A-GACUA-GA GGU-----CG A-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -AU-GU-GAG -GA-U----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------AU -CUUUG-UAU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UU-UUG ACA-UG|--- ---------A ---AGGU-C- GUA----UCC 1981 -CUU-U--(- UAAC-)-CGA -G-GGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-UU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AA-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAAUA GGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCAA--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AUC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AU-UU A-AGGU-UGG GUU-AG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ana.margin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaplasma marginale.. ACCESSION No information KEYWORDS No information. SOURCE Anaplasma marginale. ORGANISM Anaplasma marginale. REFERENCE 1 AUTHORS Weisburg,W.G., Barns,S.M., Pelletier,D.A. and Lane,D.J. TITLE 16S ribosomal DNA amplification for phylogenetic study JOURNAL J. Bacteriol. 173, 697-703 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60313 amplification_primer= 3':primer (r) comp to ggctggatcacctcctt amplification_primer= 5':primer (f) agagtttgatcctggctcag NB: PCR primers removed BASE COUNT 369 a 304 c 458 g 325 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CCG UAUACGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCGUG UAUGG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ----CC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UA-C CA-GGG-C(- UU-A)A-CCC -UG-G-GGC- 1321 -UGCU-UUUA A-UAC-UGCA G-GACUA-GA GUC-----CG G-AA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GG-C----- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- --------GC -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AGGC-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-AGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GCC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAAUA GGU-U-G-C- AA-CGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGUAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.bovis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia bovis.. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia bovis. ORGANISM Ehrlichia bovis. REFERENCE 1 AUTHORS Visser,E.S. and Allsopp,B.A. TITLE Genetic heterogeneity of the causative agent of heartwater JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U03775|g433131 BASE COUNT 387 a 311 c 468 g 343 t 2867 others ORIGIN 1 .......... .......... .......... .GUCGACAAC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------UUG UUCUCGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGAG AACAA----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-AG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAG-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----CAUG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GU -G|-GU-UU- 1261 G-GU-UAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUG-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -AU-GU-GGG -GG-U----- ---------- 1681 -(-UU-UU)- ---------- ---------- ---------- --------AC -CUCCG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------A ---AGAU-U- AGA----UCC 1981 -UCC-U--(- UAAC-)-AGG -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| GUC-UU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- U-AAG-GG-A A-CU-G-CCA --GU(-GG-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAU-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -UAA)GGCU- ---------- GA-GCUAA-U CCGUC-AAAA -GU-C-AUC- UUAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(UGA-A)CC UGCAGA--AG GAUCAAGCUU 3361 GGAU|CC~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.platys 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia platys.. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia platys. ORGANISM Ehrlichia platys. REFERENCE 1 AUTHORS Anderson,B.E., Greene,C.E., Jones,D.C. and Dawson,J.E. TITLE Ehrlichia ewingii sp. nov., the etiologic agent of canine granulocytic ehrlichiosis JOURNAL Int. J. Syst. Bacteriol. 42, 299-302 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M82801 BASE COUNT 366 a 296 c 441 g 326 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------UUU UUGUCGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGAU AAAAA----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-G-- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUC-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-CG---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UGU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG GC-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-G A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AGC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia sp.. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia sp. ORGANISM Ehrlichia sp. REFERENCE 1 AUTHORS Chen,S.-M., Dumler,S.J., Bakken,J.S. and Walker,D.H. TITLE Identification of a granulocytotropic Ehrlichia species as the etiologic agent of human disease JOURNAL J. Clin. Microbiol. 32, 589-595 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02521|g408455 geog_source= Gordon, WI biol_source= 78 yr.-old male county maintenance worker BASE COUNT 374 a 295 c 434 g 330 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAU UCUUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAA GAAUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUA-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-UU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UAU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.spCans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia sp. str. rosa. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia sp. str. rosa. ORGANISM Ehrlichia sp. REFERENCE 1 AUTHORS Johansson,K., Pettersson,B., Uhlen,M., Gunnarsson,A., Malmqvist,M. and Olsson,E. TITLE Identification of the causative agent of granulocytic ehrlichiosis in Swedish dogs and horses by direct solid phase sequencing of PCR products from the 16S rRNA gene JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10873|g532729 nat_host= Canis familiaris isolate_name= rosa NB: BP_388 primer binding site 286..307 BP_390B primer binding site complement(842..864) BASE COUNT 372 a 288 c 434 g 329 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAU UCUUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAA GAAUAG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUA-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-UU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UAU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.phagOS 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia phagocytophila str. OS (Old Sourhope). ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia phagocytophila str. OS (Old Sourhope). ORGANISM Ehrlichia phagocytophila. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73220 geog_source= Scotland isolate_name= OS (Old Sourhope) BASE COUNT 376 a 293 c 434 g 329 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAU UCUUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAA GAAUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUA-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-UU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UAU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.phagFG 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia phagocytophila str. FG (feral goat). ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia phagocytophila str. FG (feral goat). ORGANISM Ehrlichia phagocytophila. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73224 geog_source= Scotland isolate_name= FG (feral goat) BASE COUNT 376 a 293 c 434 g 329 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAU UCUUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAA GAAUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUA-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-UU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UAU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ehr.equi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ehrlichia equi.. ACCESSION No information KEYWORDS No information. SOURCE Ehrlichia equi. ORGANISM Ehrlichia equi. REFERENCE 1 AUTHORS Anderson,B.E., Dawson,J.E., Jones,D.C. and Wilson,K.H. TITLE Ehrlichia chaffeensis, a new species associated with human ehrlichiosis JOURNAL J. Clin. Microbiol. 29, 2838-2842 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73223 geog_source= California biol_source= blood of infected host animal BASE COUNT 376 a 294 c 434 g 328 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -AGC-UC--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------UUAU UCUUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAA GAAUAA---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-G--G UAAUACU-GU 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------U 1141 -CCCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-UC- 1261 G-GU-AAG|U UAA---AGGU G-AAA-UG-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCU-UUUA A-UAC-UGCC A-GACUA-GA GUC-----CG G-GA-GAGGA UAG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|A -AU-GU-GGG -GA-UU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------UAU -CUCUG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AGAU-U- AGA----UCC 1981 -UUC-U--(- UAAC-)-GGA -A-GGGC--- GC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GG-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AG CAC-G-GC-C CUUAU-G-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAUA GGU-U-G-C- AA-UGU-C(G 2881 -CAA)GGCU- ---------- GA-GCUAA-U CCGU--AAAA -GU-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- CU-UA-ACUC -GAA-G-CUG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-AU-UU A-AGGU-UGG GUC-AG-UG- ACU-AGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.2.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.2.9 WOLBACHIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.2.9 WOLBACHIA_SUBGROUP. ORGANISM 2.14.1.2.9 WOLBACHIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Sitoor 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Campbell,B.C., Bragg,T.S. and Turner,C. TITLE Phylogeny of symbiotic bacteria of four weevil species (Curculionidae:Coleoptera) based on analysis of ribosomal DNA JOURNAL Insect Biochem. Molec. Biol. 22, 415-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85268 endosymbiont_of= Sitophilus oryzae BASE COUNT 397 a 307 c 445 g 336 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GU- AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----AAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GU-GAG-- GA-A-GG-CG --GUG-GCG( U----UAAUA -----G---) CGCC-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-C- --AA--GAAG ---------C 1141 -ACUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CUGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UG-GCC--- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GGC-A--(- GAAA-)-UGC -C-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGG |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AC CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CCCU--AAAA -AA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A C-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGG-A)A. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11965 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 61 a 37 c 66 g 57 t 4155 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGAU-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-UAG-GC -U|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCA-UCCA A-AAC-UACA U-UUCUU-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAGG- AACC-ACAG- 1441 -U-G-GC(-G AA-G)GCA-- -CUCUCUG-- ---------- ---------- ---------G 1501 -CC--AA-UU C-GACG-CUG GA........ .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Ricket 4376 bp RNA RNA 02-JUL-1998 DEFINITION unclassified endosymbiont.. ACCESSION No information KEYWORDS No information. SOURCE unclassified endosymbiont. ORGANISM unclassified endosymbiont. REFERENCE 1 AUTHORS Sironi,M., Bandi,C., Sacchi,L., Di Sacco,B., Damiani,G. and Genchi,C. TITLE Molecular evidence of a closer relative of the arthropod endosymbiont Wolbachia in a filarial worm JOURNAL Mol. Biochem. Parasitol. 74, 223-228 (1905) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49261|g1177611 symbiont_of= unclassified endosymbiont BASE COUNT 387 a 259 c 394 g 341 t 2995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUA-UAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAGU GUAGC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU A--------- ------CU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ASUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GA-GC-(GGA A)-GCU-UGA UCCA|-GCUA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUC-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- ACG-UAG-GC -U|-GG-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UU-C CA-AAG-C(- UU-A)A-CUU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU G-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------UG- C-GAAA-SG- UG-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UGU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-U- AUG----CCU 1981 -GUU-C--(- GNAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GY AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UG ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-U(G 2881 -UGA)GGCU- ---------- AA-GCUAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UCA-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UU-AU-UG A-AAGU-GGG AUN-AG-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Rhcyco 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Campbell,B.C., Bragg,T.S. and Turner,C. TITLE Phylogeny of symbiotic bacteria of four weevil species (Curculionidae:Coleoptera) based on analysis of ribosomal DNA JOURNAL Insect Biochem. Molec. Biol. 22, 415-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85267|g175827 endosymbiont_of= Rhinocyllus conicus BASE COUNT 412 a 288 c 412 g 352 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCCC| UUUC-GG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAC |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -U|-GG-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AAG-C(- UC-A)A-CUU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-ACCUA-GA GAU-----UG A-AA-CAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G----| AUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CUA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGC C--CU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGG-A)A. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61767 biol_source= from Aedes albopictus BASE COUNT 195 a 113 c 187 g 162 t 3719 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GGAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UNA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCU-UUUA A-AAC-UGCU A-ACCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasog2 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84690 symbiont_of= incompatibility symbiont of Nasonia giraulti NB: IDENT:Wlb.pipien relative BASE COUNT 342 a 244 c 349 g 293 t 3148 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .CUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN --|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-GCA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-GG-UG- ACU-GGAG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasol1 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84691 symbiont_of= incompatibility symbiont of Nasonia longicornis NB: IDENT:Wlb.pipien relative BASE COUNT 401 a 278 c 399 g 340 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- CGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GCC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NN-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- UA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN --|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-GCA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-GG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasov3 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84688 symbiont_of= incompatibility symbiont of Nasonia vitripennis NB: IDENT:Wlb.pipien relative BASE COUNT 400 a 277 c 401 g 340 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NN-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN --|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-GA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCCAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-GCA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-GG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61771 biol_source= from Ephestia cautella BASE COUNT 198 a 113 c 183 g 161 t 3721 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CC----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G NNG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG A......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spdmw 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Bourtzis,K., Nirgianaki,A., Onyango,P. and Savakis,C. TITLE A prokaryotic dnaA sequence in Drosophila melanogaster: Wolbachia infection and cytoplastic incompatibility among laboratory strains JOURNAL Insect Mol. Biol. 3, 131-142 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z28983|g435171 legacy_attribute= biovar:clones dmw165,dmw168,dmw1611,dmw1614,dmw1615,dmw1616,dmw1618 NB: 'CG' at 384-5r changed to 'SS' BASE COUNT 271 a 163 c 244 g 216 t 3482 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...UUGU-AG (--CC----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-SS--UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------A ---AAAU-C- AUA----CCU 1981 -AUU-C..(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDsH 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Vautrin,D. and Solignac,M.P. TITLE Molecular identification of Wolbachia, the agent of cytoplasmic incompatability in Drosophila simulans, and variability in relation to host mitochondrial types JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. 247, 163-168 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64265 geog_source= Hawaii biol_source= adult Dros. simulans isofemale BASE COUNT 246 a 142 c 228 g 197 t 3563 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... AUAUUGU-AG (--CC----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDmel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Holden,P.R., Jones,P. and Brookfield,J.F. TITLE Evidence for a Wolbachia symbiont in Drosophila melanogaster JOURNAL Genet. Res. 62, 23-29 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S65784|g425398 biol_source= from Drosophilia melanogaster NB: This sequence comes from Fig. 5. BASE COUNT 67 a 33 c 50 g 54 t 4172 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ......GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U AC.)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDsec 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Giordano,R., O'Neill,S.L. and Robertson,H.M. TITLE Wolbachia infections and the expression of cytoplasmic incompatibility in Drosophila sechellia and D. mauritiana JOURNAL Genetics 140, 1307-1317 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17059|g1054881 biol_source= from Drosophila sechellia BASE COUNT 402 a 276 c 399 g 350 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAU -GAAC-UG-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CC----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAA-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AUG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-UA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GG(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------GG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-U- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG U-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAU-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UU -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 UCACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-CGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-GG-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61769 geog_source= Hawaii biol_source= Drosophila simulans BASE COUNT 194 a 108 c 183 g 157 t 3734 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CC----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Mscfu 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwer,J.A.J., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02882|g862345 symbiont_of= Muscifidurax uniraptor BASE COUNT 403 a 283 c 411 g 346 t 2933 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AGA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-GA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAACU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-U- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| GUU-UC-ACA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-U- U-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GC -UA--CAAUG GGC-U-G-C- AA-AGUGC(G 2881 -CGA)GGCU- ---------- AA-GCCAA-U CCCUU-AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-CGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61770 geog_source= Riverside biol_source= Drosophila simulans BASE COUNT 191 a 104 c 175 g 153 t 3753 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U.....(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDsC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Vautrin,D. and Solignac,M.P. TITLE Molecular identification of Wolbachia, the agent of cytoplasmic incompatability in Drosophila simulans, and variability in relation to host mitochondrial types JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. 247, 163-168 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64264 geog_source= Cortona, Italy biol_source= Drosophila simulans BASE COUNT 246 a 141 c 228 g 198 t 3563 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spEkue 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250, 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65671|g510555 biol_source= from Ephestia kuehniella BASE COUNT 243 a 141 c 225 g 193 t 3574 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUAGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GN-------- ---------( ------NAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.sp81 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp. str. 81. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. str. 81. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F. and Solignac,M. TITLE Evolution of single and double Wolbachia symbioses during speciation in the Drosophila simulans complex JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92 (14), 6389-6393 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80977|g854631 isolate_name= 81 BASE COUNT 243 a 140 c 227 g 195 t 3571 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spAphy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Zchori-Fein,E., Faktor,O., Zeiden,M., Gottlieb,Y., Czosnek,H. and Rosen,D. TITLE Parthenogenesis inducing microorganisms in Aphytis (Hymenoptera: Aphelinidae) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87406|g895915 biol_source= from Aphytis lingnanensis BASE COUNT 270 a 166 c 243 g 217 t 3480 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...UUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GK-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA GCAA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCR-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 CC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C..(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spAph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Zchori-Fein,E., Faktor,O., Zeiden,M., Gottlieb,Y., Czosnek,H. and Rosen,D. TITLE Parthenogenesis inducing microorganisms in Aphytis (Hymenoptera: Aphelinidae) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87407|g895916 biol_source= from Aphytis diaspidis BASE COUNT 270 a 164 c 246 g 217 t 3479 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...UUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C..(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasov2 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84687 symbiont_of= incompatibility symbiont of Nasonia vitripennis NB: IDENT:Wlb.pipien relative BASE COUNT 404 a 272 c 396 g 345 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NN-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN --|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -AGCU-UUUA A-AAC-UGCU A-AUCUA-GA GAU-----UG A-GA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-GU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------ACU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AGAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-A-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- A--GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACC-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasog1 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84689 symbiont_of= incompatibility symbiont of Nasonia giraulti NB: IDENT:Wlb.pipien relative BASE COUNT 400 a 266 c 389 g 343 t 2978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU GUACUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- GGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-AGU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NN-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UA-UG --)GG-UUGU AAA--GCUG| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN -U|-GA-UU- 1261 A-GU-AAG|U UAA---AAGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UC-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCCAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-CGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spPorc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250 (1328), 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65673|g510557 geog_source= St. Honorat Island, France biol_source= Porcellio dilatatus petiti BASE COUNT 244 a 137 c 221 g 201 t 3573 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAU----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -UGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UG G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGC-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GA-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUA-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.symArm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods. JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250, 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65669|g450561 geog_source= Niort, France biol_source= Armadillidium vulgare BASE COUNT 244 a 138 c 223 g 198 t 3573 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-ACGGU AUAAU----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAU-AG) -C-UUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCUA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GA-CU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UGUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasol2 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84692 symbiont_of= incompatibility symbiont of Nasonia longicornis NB: IDENT:Wlb.pipien relative BASE COUNT 408 a 269 c 392 g 350 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UN-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-NN -U|-GA-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-NC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-CC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UC-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 GUGA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spLaod 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250 (1328), 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65672|g510556 geog_source= Ishigaki Island, Japan biol_source= Laodelphax striatellus BASE COUNT 243 a 138 c 225 g 197 t 3573 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GGA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--UA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62248 biol_source= from Hypera postica BASE COUNT 209 a 115 c 198 g 168 t 3686 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU NUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Nasov1 4376 bp RNA RNA 02-JUL-1998 DEFINITION incompatibility symbiont. ACCESSION No information KEYWORDS No information. SOURCE incompatibility symbiont. ORGANISM incompatibility symbiont. REFERENCE 1 AUTHORS Breeuwer,J.A.J., Stouthamer,R., Barns,S.M., Pelletier,D.A., Weisburg,W.G. and Werren,J.H. TITLE Phylogeny of cytoplasmic incompatibility microorganisms in the parasitoid wasp genus Nasonia (Hymenoptera: Pteromalidae) based on 16S ribosomal DNA sequences JOURNAL Insect Mol. Biol. 1, 25-36 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84686 symbiont_of= incompatibility symbiont of Nasonia vitripennis NB: IDENT:Wlb.pipien relative BASE COUNT 407 a 272 c 396 g 350 t 2951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-NGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Bangor 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Campbell,B.C., Bragg,T.S. and Turner,C. TITLE Phylogeny of symbiotic bacteria of four weevil species (Curculionidae:Coleoptera) based on analysis of ribosomal DNA JOURNAL Insect Biochem. Molec. Biol. 22, 415-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85266 endosymbiont_of= Bangasternus orientalis BASE COUNT 366 a 249 c 364 g 316 t 3081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... ...UCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-C-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGAGC-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G----| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UGA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62247 biol_source= from Tribolium confusum BASE COUNT 200 a 112 c 185 g 164 t 3715 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -GAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GUCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G...... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.sp85 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp. str. 85. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. str. 85. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F. and Solignac,M. TITLE Evolution of single and double Wolbachia symbioses during speciation in the Drosophila simulans complex JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92 (14), 6389-6393 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80978|g854632 isolate_name= 85 BASE COUNT 246 a 140 c 223 g 195 t 3572 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAACUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.sp89 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp. str. 89. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. str. 89. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F. and Solignac,M. TITLE Evolution of single and double Wolbachia symbioses during speciation in the Drosophila simulans complex JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92 (14), 6389-6393 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80979|g854633 isolate_name= 89 BASE COUNT 246 a 139 c 223 g 196 t 3572 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAACUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spTrib 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250 (1328), 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65674|g510558 geog_source= Bordeaux, France biol_source= Tribolium cunfusum BASE COUNT 244 a 139 c 223 g 195 t 3575 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GN-------- ---------( ------NAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDsN 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Vautrin,D. and Solignac,M.P. TITLE Molecular identification of Wolbachia, the agent of cytoplasmic incompatability in Drosophila simulans, and variability in relation to host mitochondrial types JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. 247, 163-168 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64267 geog_source= Noumea, New Caledonia biol_source= adult Dros. simulans isofemale BASE COUNT 247 a 140 c 226 g 199 t 3564 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAACUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDsM 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Vautrin,D. and Solignac,M.P. TITLE Molecular identification of Wolbachia, the agent of cytoplasmic incompatability in Drosophila simulans, and variability in relation to host mitochondrial types JOURNAL Philos. Trans. R. Soc. Lond., B, Biol. Sci. 247, 163-168 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64266 geog_source= Mont D'Ambre, Madagascar biol_source= adult Dros. simulans isofemale BASE COUNT 244 a 137 c 219 g 196 t 3580 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-.U----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UGAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG........ .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS and Mouches,C. Bensaadi-Merchermek,N., Salvado,J.-C., Cagnon,C., Karama,S. TITLE operon of Wolbachia pipientis, a prokaryotic parasite of insect gonads Characterization of the unlinked 16S rDNA and 23S-5S rRNA JOURNAL Genes 165, 81-86 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23709|g1173499 biol_source= from Culex pipiens or Ephestia cautella NB: seq. from C.pipiens or E.cautella identical BASE COUNT 431 a 287 c 418 g 375 t 2865 others ORIGIN 1 .......... .......... .......... ....AAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-CUACC-A A|-GGU-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)G-GU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------C-- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -GA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGG----AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------A ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCA-GUAG G(GGA-A)UC UGCAGC--UG GAUUACCUCC 3361 UUAG|GCUUU GUACGUAA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipien 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS O'Neill,S.L., Giordano,R., Colbert,A.M.E., Karr,T.L. and Robertson,H.M. TITLE 16S rRNA phylogenetic analysis of the bacterial endosymbionts associated with cytoplasmic incompatibility in insects JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 2699-2702 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61768 geog_source= Champaign IL biol_source= Culex pipiens NB: PCR primers not incl. in seq. BASE COUNT 382 a 252 c 366 g 325 t 3051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-CUACC-A A|-GGU-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -GA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------A ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGC-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.pipie8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia pipientis.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia pipientis. ORGANISM Wolbachia pipientis. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250 (1328), 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65670|g510553 BASE COUNT 244 a 138 c 224 g 197 t 3573 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-CUACC-A A|-GGU-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -GA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spDmau 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Giordano,R., O'Neill,S.L. and Robertson,H.M. TITLE Wolbachia infections and the expression of cytoplasmic incompatibility in Drosophila sechellia and D. mauritiana JOURNAL Genetics 140, 1307-1317 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17060|g1054882 biol_source= from Drosophila mauritiana BASE COUNT 408 a 275 c 395 g 347 t 2951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-G GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GACA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-G-CA G-AA--GAGG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-AUCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-AG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CCAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.spTric 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia sp.. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia sp. ORGANISM Wolbachia sp. REFERENCE 1 AUTHORS Rousset,F., Bouchon,D., Pintureau,B., Juchault,P. and Solignac,M. TITLE Wolbachia endosymbionts responsible for various alterations of sexuality in arthropods JOURNAL Proc. R. Soc. Lond., B, Biol. Sci. 250 (1328), 91-98 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65675|g510559 geog_source= San Miguel Island, Acores biol_source= Trichogramma cordubensis BASE COUNT 244 a 139 c 224 g 196 t 3573 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 U--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr6 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02888|g862351 symbiont_of= Trichogramma deion isolate_name= South Dakota isolate BASE COUNT 406 a 275 c 401 g 357 t 2937 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC--GC-A -GG--CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUGUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA -)--CG-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UUA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-G-AG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------GC- C-GAAG-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG GC-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C C)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02884|g862347 symbiont_of= Trichogramma deion isolate_name= Texas isolate BASE COUNT 405 a 271 c 398 g 351 t 2951 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC--U--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUAUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGAU AUAGC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 U--------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA C)-G---UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------GC- C-GAAG--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-C-U- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG GC-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UC-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-G-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GG-C- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UU-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -UA-AC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr4 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02886|g862349 symbiont_of= Trichogramma deion isolate_name= Mountain Center, CA isolate BASE COUNT 394 a 266 c 379 g 340 t 2997 others ORIGIN 1 .......... .......... .......... .........U AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUGUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GN-U NAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GC--UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -C-UGGCU-A ACUC--GUG( CCA--GC... .........) .......... |......... 1201 .......... .......... ....GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UC-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)GCCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr1 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02883|g862346 symbiont_of= Trichogramma cordubensis isolate_name= Spain isolate BASE COUNT 407 a 274 c 401 g 353 t 2941 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUGUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--G-CC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-CG 1021 --AG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CU G-AA--GAAG ---------U 1141 --CUGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGA G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- C--------- ----GC--G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)CGCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CN---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GNAAG-G-A G-UU-AU-UU A-ANGU-GGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr5 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02887|g862350 symbiont_of= Trichogramma deion isolate_name= Bautista Canyon isolate BASE COUNT 405 a 272 c 394 g 351 t 2954 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-NC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUGUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)CGCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-UU-AU-UU A-AAGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Trgr3 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Stouthamer,R., Breeuwert,J.A., Luck,R.F. and Werren,J.H. TITLE Molecular identification of microorganisms associated with parthenogenesis JOURNAL Nature 361, 66-68 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L02885|g862348 symbiont_of= Trichogramma pretiosum isolate_name= Mexico isolate BASE COUNT 392 a 262 c 376 g 337 t 3009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAU -GAAC-NN-- NNNC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUGUUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGGU AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- A-A--UCU-A C-CUAG---U -AGUA-C-GG 421 -AAU-AA-UU G--------- ------UU-- G(-GAAA-)C -GGCA-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-UA 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-NNN-UGA UCCA|-GCCA UGCC-GC-AU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-AG-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-CA G-AA--GAAG ---------U 1141 -CCUGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-AGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -U|-GG-UU- 1261 A-AU-AAG|U UAA---AAGU G-AAA-UC-C CG-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCU-UUUA A-AAC-UAUU A-GCCUA-GA GAU-----UG A-AA-GAGGA UAG-A|GGAA 1381 UU-CCUGAU- GUA-GAG(-G UAAAA)-UUC -GU-AAAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUAUCUG-- ---------- ---------- ---------G 1501 UUC--AA-AU CUGACG-CUG AA-G------ -------CG- C-GAAG-GN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|A -AU-AU-GGG -AA-G----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------CU -UUCUG-UAU 1741 UA--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG NNNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC ACU-UC-UUG ACA-UG|--- ---------G ---AAAU-C- AUA----CCU 1981 -AUU-C--(- GAAG-)-GGA -U-AGGGU-- -C-------- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CC-------- ----G---G| AUU-UU-ACA |---C|A--A 2161 GC-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-UA-CU-U- U-AAG-GA-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GA -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UC -UA--CAAUG GGU-U-G-C- AA-GGUGC(G 2881 -CAA)NNCU- ---------- AA-GCUAA-U CCCU--AAAA -GA-C-AUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACG--- --CCA-UGGG A--AU-UGG- UU-UC-ACUC -GAA-G-CUA 3121 A-UGG-C-CU -AA....... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.3 RHODOBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.3 RHODOBACTER_GROUP. ORGANISM 2.14.1.3 RHODOBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.3.1 RHODOBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.3.1 RHODOBACTER_SUBGROUP. ORGANISM 2.14.1.3.1 RHODOBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.6511 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 6511.. ACCESSION No information KEYWORDS No information. SOURCE clone 6511. ORGANISM clone 6511. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89331 BASE COUNT 67 a 52 c 65 g 40 t 4152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 ....G-GG-( GUAAACAGG) ACACUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU AAGACAAU-- AG-G--(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CU 1021 --GU-G---- ---------- ---------( -------AA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GC A-AA--GAAC ---------C 1141 -CC-----AA A........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.8a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 8a.. ACCESSION No information KEYWORDS No information. SOURCE clone 8a. ORGANISM clone 8a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89298 BASE COUNT 63 a 51 c 74 g 49 t 4139 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|GGCC-UA- CGA------- -----UC-UA 781 U-AG--CUG| -G-UUU--(U -AGA)-GGAU ----G--U-- CAG-C|A-AC -ACUGG-G-A 841 (GUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-AGCAGU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC---- UCUA|-GCCA UGCC-GC-GA 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CU 1021 --GU-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GC A-AA--CACA .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5211 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5211.. ACCESSION No information KEYWORDS No information. SOURCE clone 5211. ORGANISM clone 5211. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89325 BASE COUNT 61 a 54 c 73 g 52 t 4136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ...AUUA-G- GAU-G---UU 721 GG-UG-GG-( GU---C-GG) -C-CU-CC-A A|-GCC-U-- C-A------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CU 1021 --GU-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GU A-AA--GAAA ---------C 1141 UCCCGGCUCA A........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.10a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 10a.. ACCESSION No information KEYWORDS No information. SOURCE clone 10a. ORGANISM clone 10a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89272 BASE COUNT 63 a 48 c 71 g 49 t 4145 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .....UA--- GUA-G---UU 721 GG-UG-G--( GU-AAC--G) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAUAG GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG -G)GG-UCGU AAA--GCUC| UUUC-GC-CU 1021 --GU-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GU A-AA--GAAA .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.47a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 47a.. ACCESSION No information KEYWORDS No information. SOURCE clone 47a. ORGANISM clone 47a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89293 BASE COUNT 57 a 44 c 61 g 46 t 4168 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .U-AAU-GG) -C-CUACC-A A|-GUC-U-- CG-------- -----UC-UU 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACN)--NNNN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGC AAA--GCUC| UUUC-GC-CU 1021 --GU-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GU A-AA--GAAA .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAC-1.. ACCESSION No information KEYWORDS No information. SOURCE clone GAC-1. ORGANISM clone GAC-1. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007249 BASE COUNT 93 a 85 c 125 g 70 t 4003 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--UN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -NCUA-U-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-AU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----NC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-N-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-NCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-NCGU AAA--GCU.| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAC8 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAC-8.. ACCESSION No information KEYWORDS No information. SOURCE clone GAC-8. ORGANISM clone GAC-8. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007253 BASE COUNT 89 a 86 c 121 g 72 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUA-U-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-AU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAC3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAC-3.. ACCESSION No information KEYWORDS No information. SOURCE clone GAC-3. ORGANISM clone GAC-3. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007251 BASE COUNT 101 a 90 c 128 g 81 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -UCUA-A-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.algic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter algicola str. ML4 ATCC 51441. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter algicola str. ML4 ATCC 51441. ORGANISM Roseobacter algicola. REFERENCE 1 AUTHORS Lafay,B., Ruimy,R., de Traubenberg,C.R., Breittmayer,V., Gauthier,M.J. and Christen,R. TITLE Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima JOURNAL Int. J. Syst. Bacteriol. 45, 290-296 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51441 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78313|g984167 Former RDP Sids: Ros.algoc2 isolate_name= ML4 NB: former name Roseobacter algocolus BASE COUNT 331 a 321 c 412 g 273 t 3039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -ACUG-C-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CN-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UN-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -CU----ACA 1981 -UCG-A--(- GAGA-)-UCG -A-UGGU--- CC-------- ---------- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- ---------- ----GA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CCU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCC 3121 G-UGC-G-CC -AA-CCU--- ---------- ---------- -----(---- -UUC.....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.algic3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter algicola str. FF2 ATCC 51442. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter algicola str. FF2 ATCC 51442. ORGANISM Roseobacter algicola. REFERENCE 1 AUTHORS Lafay,B., Ruimy,R., de Traubenberg,C.R., Breittmayer,V., Gauthier,M.J. and Christen,R. TITLE Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima JOURNAL Int. J. Syst. Bacteriol. 45, 290-296 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51442 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78314|g984168 Former RDP Sids: Ros.algoc3 isolate_name= FF2 NB: former name Roseobacter algocolus BASE COUNT 336 a 328 c 423 g 274 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -ACUG-C-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -CU----ACA 1981 -UCG-A--(- GAGA-)-UCG -A-UGGU--- CC-------- ---------- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- ---------- ----GA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CCU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCC 3121 G-UGC-G-CC -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CG-GA-CC A-CGGU-G.. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.algico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter algicola str. T-FF3 ATCC 51440 (T). ACCESSION No information KEYWORDS No information. SOURCE Roseobacter algicola str. T-FF3 ATCC 51440 (T). ORGANISM Roseobacter algicola. REFERENCE 1 AUTHORS Lafay,B., Ruimy,R., de Traubenberg,C.R., Breittmayer,V., Gauthier,M.J. and Christen,R. TITLE Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima JOURNAL Int. J. Syst. Bacteriol. 45, 290-296 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51440 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78315|g984169 Former RDP Sids: Ros.algoco isolate_name= T-FF3 NB: former name Roseobacter algocolus BASE COUNT 334 a 324 c 417 g 273 t 3028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -ACUG-C-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -CU----ACA 1981 -UCG-A--(- GAGA-)-UCG -A-UGGU--- CC-------- ---------- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- ---------- ----GA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CCU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCC 3121 G-UGC-G-CC -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAC2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAC-2.. ACCESSION No information KEYWORDS No information. SOURCE clone GAC-2. ORGANISM clone GAC-2. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007250 BASE COUNT 100 a 88 c 125 g 82 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCAG---A -UCUA-A-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAU---- 661 ----UUGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-C.... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-5.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-5. ORGANISM clone GAI-5. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007256 biol_source= coastal seawater BASE COUNT 116 a 104 c 140 g 91 t 3925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGA. |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Prntla 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Ashen,J.B. and Goff,L.J. TITLE Molecular identification of a bacterium inducing gall formation on the marine red alga: Prionitis lanceolata JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37762|g1145296 symbiont_of= Prionitis lanceolata gall BASE COUNT 365 a 342 c 447 g 309 t 2913 others ORIGIN 1 .......... .......... .......... ..GGGGGAUC CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---G -UCUA-C-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------CU 541 UC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAC---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GAA A)---CGUGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAN |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -N|-GA-CU- 1261 A-UU-AAG|U GAG---GGGU G-AAA-UN-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UCUC A-UAC-UGGU A-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(UUA-UA)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAA-CUC -AAA-GGAAU UG-ACGGG-G -G-------G 1861 CCA--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -AC----AAC 1981 -UCG-A--(- GAGA-)-UCG -A-UAGU--- UC-------- ---CU----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GG-------- ----GA---| CAC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- -UUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(AC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CA-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCA-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|UGGAU CCACU..... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.litora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter litoralis. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter litoralis. ORGANISM Roseobacter litoralis. REFERENCE 1 AUTHORS Lafay,B., Ruimy,R., de Traubenberg,C.R., Breittmayer,V., Gauthier,M.J. and Christen,R. TITLE Roseobacter algicola sp. nov., a new marine bacterium isolated from the phycosphere of the toxin-producing dinoflagellate Prorocentrum lima JOURNAL Int. J. Syst. Bacteriol. 45, 290-296 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78312|g984170 BASE COUNT 345 a 324 c 419 g 281 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAC ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U AUA---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUAU A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-GCGU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-CCA 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GG-CC A-CGGU-AGG AUC....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter denitrificans str. OCh 114. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter denitrificans str. OCh 114. ORGANISM Roseobacter denitrificans. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the some purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59063 isolate_name= OCh 114 BASE COUNT 352 a 325 c 427 g 289 t 2983 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCNU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(N -AGA)-GGAC ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UCUA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-NNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --NC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCN-A--(- GAGA-)-UCG -G-GNGU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-N NUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-U-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UNG- UU-CU-ACCC -GAA-G-ACG 3121 U-CGC-G-CU -AA-CCN--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GG-CC A-CGGU-AGG AUC-AG-CG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.denit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter denitrificans str. OCh 114. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter denitrificans str. OCh 114. ORGANISM Roseobacter denitrificans. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A.J., Sly,L.I., Moore,C.J. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96746 isolate_name= OCh 114 BASE COUNT 326 a 286 c 387 g 264 t 3113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-G-C-A --GC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -GGAGCGGCG GACG------ ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CN--(-- ---------U 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAC ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GAUAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG--AU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)ACCCU -CG-G-AAC- 1321 -UGCCCUCUA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCAA-U- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG AGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-GCGU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CGG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-UA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-U-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ros.denit3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseobacter denitrificans str. OCh 114. ACCESSION No information KEYWORDS No information. SOURCE Roseobacter denitrificans str. OCh 114. ORGANISM Roseobacter denitrificans. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A., Sly,L.I., Moore,C. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01784 isolate_name= OCh 114 NB: No difference in this sequence and that for Ros.denit2 BASE COUNT 326 a 286 c 387 g 264 t 3113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-G-C-A --GC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -GGAGCGGCG GACG------ ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CN--(-- ---------U 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAC ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GAUAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG--AU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U UAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)ACCCU -CG-G-AAC- 1321 -UGCCCUCUA A-AAC-UCCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCAA-U- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG AGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-GCGU--- UC-------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CGG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-UA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-U-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI37 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-37.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-37. ORGANISM clone GAI-37. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007260 biol_source= coastal seawater BASE COUNT 94 a 86 c 121 g 78 t 3997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CN (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--UAU-A C-CCUU---C -ACUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.LFR 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. LFR. str. LFR. ACCESSION No information KEYWORDS No information. SOURCE str. LFR. str. LFR. ORGANISM str. LFR. REFERENCE 1 AUTHORS Ledyard,K.M., Delong,E.F. and Dacy,J. TITLE Characterization of a DMSP-degrading bacterial isolate from the Sargasso Sea JOURNAL Arch. Microbiol. in press (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15345 isolate_name= LFR BASE COUNT 316 a 293 c 397 g 262 t 3108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A--C (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--UGU-A C-CCUU---C -ACUU-C-GG 421 -AAU-AG-UC C--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAURCC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---A-|G CCCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-GC UAAA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-GA-AAG|C UUG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UAUC A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -GG-GG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------C-- -UUCGG-UGU 1741 CA--CA---- ---C-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G .......... 1861 ......A-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UCGG--- ACC----G-C 1981 -UGG-A--(- GAGA-)-UCC -A-GUUU--- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- -UUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -AA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI26 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-26.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-26. ORGANISM clone GAI-26. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007258 biol_source= coastal seawater BASE COUNT 93 a 89 c 122 g 76 t 3996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UCGU AAA---CUC| UUUC-GC-UA 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.liEE36 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EE-36. str. EE-36. ACCESSION No information KEYWORDS No information. SOURCE str. EE-36. str. EE-36. ORGANISM str. EE-36. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment JOURNAL Int. J. Syst. Bacteriol. 47, 773-780 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58348|g1718224 biol_source= lignin enrichment culture isolate_name= EE-36 BASE COUNT 70 a 85 c 94 g 74 t 4053 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .........C A-U-GU-GGU -UUNAUU-CG -(ACGCAA-C G)--CNCAGA 1921 G-CCUUA-NC AAC-CC-UUG ACN-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-GCGU--- UC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CGC-ANGUGA |---C|N--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-U-GUC- UC........ 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.36 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 36 str. 36 (Nielsen). ACCESSION No information KEYWORDS No information. SOURCE str. 36 str. 36 (Nielsen). ORGANISM str. 36. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS isolate_name= 36 (Nielsen) NB: helix at 208r missing; gels reread to confirm BASE COUNT 339 a 338 c 434 g 283 t 2982 others ORIGIN 1 .......... .......... .......... .GUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGN- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UGU-G C-CCUU---C -UGUU-G-AG 421 -GAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACU-CG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAA--- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- ----GG---- 661 ----AAGG-- AUC---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GNG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GN -AAA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-N-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-N-UAC- 1321 -UGCC-UCCA A-AAC-UAUC A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-NNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 CCCN-A--(- GAGA-)-UCG -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----NN---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCU -GAA-G-GCC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG. .......... 3301 .......... GUAA-CAAGN N......... .(.GA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sag.stllat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sagittula stellata str. E-37. ACCESSION No information KEYWORDS No information. SOURCE Sagittula stellata str. E-37. ORGANISM Sagittula stellata. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment JOURNAL Int. J. Syst. Bacteriol. 47, 773-780 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58356|g1718230 isolate_name= E-37 BASE COUNT 334 a 329 c 429 g 277 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UAU-G C-CCUU---C -UGUU-G-AG 421 -GAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACU-CG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAA--- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- ----GG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU -AAA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UCCA A-AAC-UAUC A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GAGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AANACUC -ACA-GGAAU UG-ACGGC-G -G-C-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGGAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CUU- 2281 AG--UUGG-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCC --GA(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUGA AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCU -GAC-G-UCC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G---AANUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.37SW2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 37SW-2.. ACCESSION No information KEYWORDS No information. SOURCE clone 37SW-2. ORGANISM clone 37SW-2. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment JOURNAL Int. J. Syst. Bacteriol. 47, 773-780 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58355|g1718234 biol_source= seawater BASE COUNT 72 a 64 c 86 g 57 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... ......U-CG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAA--- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- ----GG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--N-G CC(--UU-AG --)GG-UCGU AAA--GCAC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU -AAA--GAAA ---------C 1141 -CCCG..... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.37SW1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 37SW-1.. ACCESSION No information KEYWORDS No information. SOURCE clone 37SW-1. ORGANISM clone 37SW-1. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Sagittula stellata gen. nov., sp. nov., a lignin-transforming bacterium from a coastal environment JOURNAL Int. J. Syst. Bacteriol. 47, 773-780 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58354|g1718233 biol_source= seawater BASE COUNT 71 a 63 c 84 g 55 t 4103 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAA--- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- ----UG---- 661 ----AAGG-- -NC---A-|G CCCGC----- -GU|----CN G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-NA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-N 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCAC| UUUC-GC-CA 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCU-G-GU -AAA--GAAA ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.AG33 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. AG33. str. AG33. ACCESSION No information KEYWORDS No information. SOURCE str. AG33. str. AG33. ORGANISM str. AG33. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79374 (bases 1 to 294) isolate_name= AG33 BASE COUNT 185 a 186 c 253 g 170 t 3582 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... G--AUKW-K- GUA-K---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACD-D A|-GCU-KN- CGA------- -----UC-UA 781 U-AG-C-UK| -G-WWW--(G -AGA)-GGAU ----GA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGD-C-UCC -(UAYG)--G GAG-KC-AG- C-A---GY-G 901 GGK-AAUCUU A-GACMAU-- GG-GC-(GCA A)-GCC-UNA UCUA|-GCCA UGCC-GN-RU 961 G-A-GU-G-A U-KAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUN| NUUC-RC-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-A-GK R-AA--GAAA ---------C 1141 -CCCGGCR-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ........GC -G|-GA-UC- 1261 A-GW-AA-|G UUG---GGGU G-AAA-UC-C CK-GKG-C(- UC-A)A-CCU -CD-D-DAC- 1321 -UGCC-UCUD A-AAC-UCCU G-G-CUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GDAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UR-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UR)- ---------- ---------- ---------- -------SUD -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGD-D---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......G-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUDA -GU)-CCGGC AA-------- CGAG-C--GC DACCC-DC-D |-UC--UUC- 2281 DG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-A A-CU-G-CCC --GU(-GA-U DA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -N-AGUC-CU NNU-G-GC-C CUURC-G-GG -UU--GGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGU-G-CC -UA--CNGUG GGU------- --------(- 2881 ----)----- ---------- -----UWA-U YCCC--AAAA -GG-C-AUC- UCNGUUCGGA 2941 U-UGUCGUC- (UGCNAC-U- Y)-GACGGCA -UGAAGU-CG -GAAU-CGC- -UAGUW-AUC 3001 GC-GUA-(AC -NGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.NF18 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. NF18. str. NF18. ACCESSION No information KEYWORDS No information. SOURCE str. NF18. str. NF18. ORGANISM str. NF18. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79392 (bases 1 to 318) isolate_name= NF18 BASE COUNT 199 a 192 c 263 g 167 t 3555 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 GG-UG-GG-( GU-AAN-GG) -C-CYACN-N A|-GCN-NN- CGA------- -----UC-CN 781 U-RG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACYGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GY-G 901 GGG-AAUCCU A-GACNAU-- UG-GG-(GCA A)-CCC-NNA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU NAA--GCUN| NUUC-GC-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-A-GU N-AA--GAAN ---------C 1141 -CCCGGCU-N ACUCC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ......G-GC -G|-GA-UU- 1261 G-GA-AAG|U UGG---GGGU N-AAA-UC-C NK-GGG-C(- UC-A)A-CCU -CG-G-NAC- 1321 -UGCC-KNNN A-AAC-UCCC A-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CKCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--R 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UN-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CN--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- K-GGGAGUAC 1801 GGU-N---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| ........GA |---C|A--G 2161 GU-GC-UNCA UG|G-CNG-- UCG-UCA|-G C-N---NG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-US--UUC- 2281 AG--UUGC-C AG-CNG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CR-CU-C- U-GGA-GR-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--US -A-AGUC-CU GAU-G-GN-C UUACG---GG -UK--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCNN--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCNA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI33 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-33.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-33. ORGANISM clone GAI-33. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF010286 biol_source= coastal seawater BASE COUNT 96 a 89 c 123 g 79 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--G-UC| UUUC-GC-C. 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.307 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 307. str. 307. ACCESSION No information KEYWORDS No information. SOURCE str. 307. str. 307. ORGANISM str. 307. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14583|g975736 isolate_name= 307 BASE COUNT 350 a 325 c 425 g 288 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -CGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--C------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---C -UCUA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCUA|-GCGA URCC-GC-GU 961 G-U-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCAC| UUUC-GC-CA 1021 --AG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CUU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 A-AU-AAG|U UAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGUU A-GUCUU-GA GUU-----CG A-GA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-UGG -GG-GG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CCC -UUCAG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGUG--- -CU----AUA 1981 -UCC-A--(- GAGA-)-UGG -A-UAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----GA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCC --GU(-GA-U AA)-GCG-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI3b 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-3b.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-3b. ORGANISM clone GAI-3b. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007255 biol_source= coastal seawater BASE COUNT 92 a 86 c 122 g 79 t 3997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........GC -GAAC-GC-- UGGC-GGC-A -CGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A U-NGA--G-G UC(--UU-AG --)GA-UCGU AAA--G-UC| UUUC-GC-C. 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.EE36_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EE-36. str. EE-36. ACCESSION No information KEYWORDS No information. SOURCE str. EE-36. str. EE-36. ORGANISM str. EE-36. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007254 biol_source= lignin enrichment culture isolate_name= EE-36 BASE COUNT 104 a 88 c 122 g 85 t 3977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UCGU AAA--GCAC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGC......) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI21 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-21.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-21. ORGANISM clone GAI-21. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007257 biol_source= coastal seawater BASE COUNT 95 a 84 c 118 g 80 t 3999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A UNGAA--G-G UC(--UU-AG --)GA-UCGU AAA--GCAC| UUUC-GC-C. 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR83 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Britschgi,T.B. and Giovannoni,S.J. TITLE Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing JOURNAL Appl. Environ. Microbiol. 57, 1707-1713 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63810 Former RDP Sids: env.clon83 library_source= Sargasso Sea bacterioplankton DNA NB: IDENT:Rhodobacter/Roseobacter group BASE COUNT 318 a 288 c 388 g 274 t 3108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--N ANAC-AUGCA A-GUC-GAKC 121 G--C------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GAG--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CG 1021 --U--G-U-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-UA A-AG--AAAC ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 A-GU-CAG|U CAG---AGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGCU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 AUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -UC-GU-CGG -AA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -UUCGG-UGA 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---CGUC--- -GC----GGA 1981 -UCC-A--(- GAGA-)-UGG -A-UCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CN-------- -----U---| GAC-AG-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGAAAC-U- C)-GACCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI15 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-15.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-15. ORGANISM clone GAI-15. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF010285 biol_source= coastal seawater BASE COUNT 98 a 86 c 124 g 80 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-ANC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----AA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AANCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--G-UC| UUUC-G.... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3011 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3011.. ACCESSION No information KEYWORDS No information. SOURCE clone 3011. ORGANISM clone 3011. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89309 BASE COUNT 54 a 49 c 69 g 49 t 4155 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ...AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-U-- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-C-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CU 1021 --GU-GAA-- GA-------- ---------( ------UUN. ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......UG( CCC--GCAGC A........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR122 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35465|g529974 BASE COUNT 185 a 169 c 219 g 149 t 3654 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 ...GU-AG-( GU-AAC--G) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG C-UAC-UGUU A-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GA--C 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ...ACG--UC -A-AGUC-CU CAU-G-GC-- -UUAC-G-GA -U----GGC- 2821 U-ACA-CA-C GUGUGCUACA AUGGC---GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-C CCC---AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(-C -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAC5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAC-5.. ACCESSION No information KEYWORDS No information. SOURCE clone GAC-5. ORGANISM clone GAC-5. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007252 BASE COUNT 99 a 89 c 129 g 83 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---C -UCUA-A-GG 421 -AAU-AG-CC U--------- ------CU-- G(-GAAA-)C -GGAG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC--G-CC 1021 --AG-AGAU- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.GAI36 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone GAI-36.. ACCESSION No information KEYWORDS No information. SOURCE clone GAI-36. ORGANISM clone GAI-36. REFERENCE 1 AUTHORS Gonzalez,J.M. and Moran,M.A. TITLE Numerical dominance of a group of marine bacteria in the alpha-subclass of class Proteobacteria in coastal seawater JOURNAL Appl. Environ. Microbiol. 63, 4237-4242 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF007259 BASE COUNT 100 a 90 c 129 g 81 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---C -UCUA-A-GG 421 -AAU-AG-CC U--------- ------CU-- G(-GAAA-)C -GGAG-A--G UAAUACC-UU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCAC| UUUC--G-CC 1021 --AG-AGAU- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.alcalp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus alcaliphilus str. TK 1015 JCM 7364 (T). ACCESSION No information KEYWORDS No information. SOURCE Paracoccus alcaliphilus str. TK 1015 JCM 7364 (T). ORGANISM Paracoccus alcaliphilus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 7364 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32238|g514978 Former RDP Sids: Par.alkalp JCM 7364 (T) = NCIMB 13180 = ATCC 51199 isolate_name= TK 1015 BASE COUNT 336 a 330 c 440 g 279 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---C -UCUA-C-GG 421 -AAU-AG-UC U--------- ------CG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 A-GC-AAG|U UAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUA A-AAC-UGUU G-AUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---CAGG--- ACC-----GC 1981 -CGG-A--(- GAGA-)-UUC -G-GUUU--- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CCU-GU-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK735 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK735.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK735. ORGANISM clone SMK735. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78652|g509493 BASE COUNT 57 a 45 c 76 g 46 t 4152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------...U 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---A-|G UCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG..... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.amvora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus aminovorans str. DM-82 JCM 7685 (T). ACCESSION No information KEYWORDS No information. SOURCE Paracoccus aminovorans str. DM-82 JCM 7685 (T). ORGANISM Paracoccus aminovorans. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 7685 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32240|g514980 JCM 7685 (T) = ATCC 49632 isolate_name= DM-82 BASE COUNT 336 a 331 c 443 g 275 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 A-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUU G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---CAGG--- ACA-----GC 1981 -CGG-A--(- GAGA-)-UUC -G-GUCU--- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CCU-GU-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.thcyan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus thiocyanatus str. THI 011. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus thiocyanatus str. THI 011. ORGANISM Paracoccus thiocyanatus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32242|g514982 IAM 12816 (T) = IFO 14569 isolate_name= THI 011; 1-8A BASE COUNT 330 a 335 c 448 g 268 t 2995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AACG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 U-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UACG G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CDAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---CAGG--- ACC-----GC 1981 -CCG-A--(- GAGA-)-UCG -G-GUUU--- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CCU-GU-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-C-A G-CG-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.amphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus aminophilus str. DM-15 JCM 7686 (T). ACCESSION No information KEYWORDS No information. SOURCE Paracoccus aminophilus str. DM-15 JCM 7686 (T). ORGANISM Paracoccus aminophilus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 7686 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32239|g514979 JCM 7686 (T) = ATCC 49673 isolate_name= DM-15 BASE COUNT 344 a 330 c 436 g 275 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CAU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U UGG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC A-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---UAGG--- ACA-----AC 1981 -UCC-A--(- GAGA-)-UGG -A-GCUU--- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA---| CCU-AU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AUG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CG-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K5.. ACCESSION No information KEYWORDS No information. SOURCE clone K5. ORGANISM clone K5. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91520|g987795 BASE COUNT 88 a 69 c 114 g 70 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGS|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U UGG---GGGU GGAAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC A-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAA -UUC-G-UGA 1741 CA--CA---- ---C-(UAA- ---C)G-GA- UUAA-GCAUU C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus denitrificans. ORGANISM Paracoccus denitrificans. REFERENCE 1 AUTHORS Ludwig,W., Mittenhuber,G. and Friedrich,C.G. TITLE denitrificans Transfer of Thiosphaera pantotropha to Paracoccus JOURNAL Int. J. Syst. Bacteriol. 43, 363-367 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69159 NB: pro synon. Thiosphaera pantotropha BASE COUNT 346 a 352 c 469 g 286 t 2923 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-GCG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CAGG--- ACC-----GG 1981 -CCC-G--(- GAGA-)-CGG -G-UCUU--- UC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CG-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUNN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.denit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus denitrificans. ORGANISM Paracoccus denitrificans. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure is a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13480|g461293 IAM 12479 (T) = IMET 10380 = DSM 56 = ATCC 17741 = NCIMB 11627 NB: stretch of N's removed after position 220r, 465r & 1278r BASE COUNT 289 a 269 c 373 g 237 t 3208 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-GCG---- ---------- ---------- ---------- ---NNN-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..CCA---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UNA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU NAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 G-GA-AAG|U UNN---GGGU G-AAA-UN-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GUCUG-G. .......... .......... .AG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(CAU-GN)- ---------- ---------- ---------- -------CUC -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------C ---CAGG--- AC.----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....A---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCCA-AAAN -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.versu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus versutus. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus versutus. ORGANISM Paracoccus versutus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32243|g514976 IAM 12814 (T) = IFO 14567 = ATCC 25364 = CCM 2505 = DSM 582 BASE COUNT 329 a 335 c 448 g 270 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-GCG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG AGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CAGG--- ACC-----GG 1981 -CCC-G--(- GAGA-)-CGG -G-UCUU--- UN-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CG-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.versu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus versutus. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus versutus. ORGANISM Paracoccus versutus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32244|g514977 IAM 12815 = IFO 14568 = ATCC 27793 BASE COUNT 328 a 336 c 448 g 270 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-GCC---- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CAGG--- ACC-----GG 1981 -CCC-G--(- GAGA-)-CGG -G-UCUU--- UN-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CG-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.versut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus versutus. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus versutus. ORGANISM Paracoccus versutus. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79429 (bases 1 to 299) Former RDP Sids: Thb.versut ATCC 25364 = IFO 14567 = IAM 12814 (T) = CCM 2505 = DSM 582 NB: former name Thiobacillus versutus BASE COUNT 226 a 213 c 304 g 190 t 3443 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)..GG---- ---------- ----G-AA-- ---GA----- ---------- 601 --(------- ----UUA--- ---)------ ---------| -----U---- G--CC----- 661 ----AAG--- AUU---A-|G -CCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-M A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACGAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-G..( .......... .........) .......... |....G-G-- 1201 GCN-AGCGUG UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UU-C -G-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GNCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(GG UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- ARCA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(GCA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... ......A|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-U CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(AC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCG-GGC-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.kocuri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus kocurii str. B JCM 7684 (T). ACCESSION No information KEYWORDS No information. SOURCE Paracoccus kocurii str. B JCM 7684 (T). ORGANISM Paracoccus kocurii. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Paracoccus thiocyanatus sp. nov., a new species of thiocyanate-utilizing facultative chemolithotroph, and transfer of Thiobacillus versutus to the genus Paracoccus as Paracoccus versutus comb. nov. with the emendation of the genus JOURNAL Microbiology 141, 1469-1477 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 7684 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32241|g514981 (bases 1 to 1385) JCM 7684 (T) = ATCC 49631 isolate_name= B BASE COUNT 326 a 342 c 452 g 265 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-UC C--------- ------CG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 A-GC-AAG|U UAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUA A-GAC-UGUU G-AUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CAGG--- ACC-----GC 1981 -UCG-G--(- GAGA-)-CCG -A-GCUU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUC- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GCC 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Par.solven 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paracoccus solventivorans. ACCESSION No information KEYWORDS No information. SOURCE Paracoccus solventivorans. ORGANISM Paracoccus solventivorans. REFERENCE 1 AUTHORS Siller,H., Rainey,F.A., Stackebrandt,E. and Winter,J. TITLE Isolation and characterization of a new gram-negative, acetone-degrading, nitrate-reducing bacterium from soil, Paracoccus solventivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1125-1130 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y07705|g1666666 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 337 a 337 c 451 g 279 t 2972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AUC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUA-C-GG 421 -AAU-AG-UC C--------- ------UG-- G(-GAAA-)C -UGGG-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-G-CA G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGA-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUCA A-AAC-UAUC G-GUCUG-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CCGG--- ACA-----GC 1981 -UCC-A--(- GAGA-)-UGG -A-GUCU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CCG-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CCC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GUG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GACGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAC-G-GNC 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-GA-CC A-CGGU-AGG AUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.veldkam 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter veldkampii. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter veldkampii. ORGANISM Rhodobacter veldkampii. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the new genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16421 Former RDP Sids: Rb.veltkam NB: former name Rhodobacter veltkampii BASE COUNT 336 a 332 c 443 g 275 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CG-GGG-C(- UC-U)A-CCU -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UCUC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAA -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---GUAU--- CGC----GGA 1981 -ACC-A--(- GAGA-)-UGG -U-UCUU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UU--CUN- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---N(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-AA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-CU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGNGG-C-A G-CU-GG-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.veldka2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter veldkampii. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter veldkampii. ORGANISM Rhodobacter veldkampii. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13477|g461298 NB: stretch of N's removed after position 220r, 465r & 1278r BASE COUNT 304 a 280 c 386 g 243 t 3163 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G...... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)...G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -UCAU-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------UU 541 NG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UN| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GG-GAA-- GA-------- ---------( ------UNA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GC G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-GA-AAG|U UGG---NGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UCCA A-AAC-UCCC A-GUCUU-GA GNU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-UG---- ---------- 1681 -(CAU-GN)- ---------- ---------- ---------- -------CAA -UUCGG-UGA 1741 CA--CA---- --GC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|N-NNN- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ANGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UG|--- ---------G ---GUAU--- C..----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUA-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-UU--CUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-GGG-AA-A A-CU-G-CCG --GU(-GA-U NA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCCA-AAAN -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -NGC-AU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2070 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2070. str. SBR2070. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2070. str. SBR2070. ORGANISM str. SBR2070. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84602|g871723 isolate_name= SBR2070 BASE COUNT 89 a 79 c 124 g 75 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGG-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUU---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -N-CUACC-A A|-GCC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SW2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SW2. str. SW2. ACCESSION No information KEYWORDS No information. SOURCE str. SW2. str. SW2. ORGANISM str. SW2. REFERENCE 1 AUTHORS Ehrenreich,A. and Widdel,F. TITLE Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism JOURNAL Appl. Environ. Microbiol. 60, 4517-4526 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78717|g535245 isolate_name= SW2 BASE COUNT 350 a 323 c 428 g 283 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUCGA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-U--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---C---(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGG--C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-GA-AAG|U UGG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUCA A-AAC-UCCC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUCGG-UGA 1741 CA--CA---- ---C-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CAGU--- GAC----CGU 1981 -UCC-A--(- GAGA-)-UGG -U--CCUU-- UC-------- ---UC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- ----GA--C| ACU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCAA-AAAG -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G--UG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AG-AGG-C-A G-CC-AA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UACUC-GA.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2045 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2045. str. SBR2045. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2045. str. SBR2045. ORGANISM str. SBR2045. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84583|g871704 isolate_name= SBR2045 BASE COUNT 89 a 80 c 124 g 73 t 4010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGN-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------CU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- U-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-G-AC-G-A U-GAA--G-G NC(--UU-AG --)GG-UUGU AAA--GUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.capsul4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 (T). ORGANISM Rhodobacter capsulatus. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11166 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16428 ATCC 11166 (T) = NCIMB 8254 = ATCC 17015 isolate_name= ATH 2.3.1 isolate_name= ATH 3.2.1 BASE COUNT 343 a 333 c 439 g 271 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-GUCUU-GA GGN-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGAAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---AGAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-CGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A GG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGC------- --------(- 2881 ----)----- ---------- -----CAA-U CCCA--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AA)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- GU-CU-ACCC -UAA-G-AAG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CC-AG-CC A-CGGU-AGG CUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.capsul3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus str. ATH 2.3.1 ATCC 11166 (T). ORGANISM Rhodobacter capsulatus. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11166 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13474|g461295 ATCC 11166 (T) = NCIMB 8254 = ATCC 17015 isolate_name= ATH 2.3.1 isolate_name= ATH 3.2.1 NB: stretch of N's removed after position 87r,220r,466r,557r,566r,1278r BASE COUNT 307 a 283 c 378 g 242 t 3166 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GNG( CCA--GCAGC CGCGGUA-A) U-A-C-G... |......... 1201 .......... ....GAAUUA -CU-GG..|. .......... .......... ..|....... 1261 ........|. .......GGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-GUCUU-GA GGN-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- -C-------- -------NCU -GUCGG-UGA 1741 CA--CA---- --NC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGAAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------G ---AGAU-C. ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .U-------- ----GG---| AUC-UU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A GG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGC------- --------(- 2881 ----)----- ---------- -----CNAAU CCCAA-AAAN -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AA)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.capsul2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter capsulatus str. B10 ATCC 33303. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus str. B10 ATCC 33303. ORGANISM Rhodobacter capsulatus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33303 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34129 isolate_name= B10 BASE COUNT 343 a 330 c 423 g 275 t 3005 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-G..( ........GC CGCGGUA-A) U-A-C-G... |......... 1201 .......... ....GAAUUA -CU-G...|. .......... .......... ..|....... 1261 ........|. ..G---NGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-GUCUU-GA GGN-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGA 1741 CA--CA---- ---C-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGAAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---AGAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A GG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGC------- --------(- 2881 ----)----- ---------- -----CAA-U CCCA--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AA)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- GU-CU-ACCC -UAA-G-AAG 3121 G-UGC-G-CC -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- NGGAGG-C-A G-CN-AG-CC A-CGGU-AGG CAC-AG-GN- NGG....... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.capsula 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter capsulatus str. B10 ATCC 33303. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus str. B10 ATCC 33303. ORGANISM Rhodobacter capsulatus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33303 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60671 isolate_name= B10 BASE COUNT 343 a 330 c 417 g 275 t 3011 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-G..( .........C CGCGGUA-A) U-A-C-G... |......... 1201 .......... .....AAUUA -CU-G...|. .......... .......... ..|....... 1261 ........|. ......NGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-GUCUU-GA GGN-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGA 1741 CA--CA---- ---C-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGAAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---AGAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A GG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGC------- --------(- 2881 ----)----- ---------- -----CAA-U CCCA--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AA)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- GU-CU-ACCC -UAA-G-AAG 3121 G-UGC-G-CC -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- NGGAGG-C-A G-CN-AG-CC A-CGGU-AGG CAC-AG.... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U..~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.capsul5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter capsulatus str. C5. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter capsulatus str. C5. ORGANISM Rhodobacter capsulatus. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16427 isolate_name= C5 BASE COUNT 342 a 333 c 436 g 275 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 NG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(N -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 A-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------G ---AGAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-UC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---N(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGC------- --------(- 2881 ----)----- ---------- -----CAA-U CCCA--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- GU-CU-ACCC -UAA-G-AUG 3121 G-UGC-G-CC -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CC-AG-CC A-CGGU-AGG CUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.blastic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter blastica. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter blastica. ORGANISM Rhodobacter blastica. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16429 Former RDP Sids: Rps.blasti ATCC 33485 (T) = NCIMB 11576 = DSM 2131 NB: former name Rhodopseudomonas blastica BASE COUNT 332 a 332 c 448 g 276 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCCU-C-GG 421 -AAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GU-GG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-A-AA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCUC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---GUAU--- CGC----GGG 1981 -GCC-A--(- GAGA-)-UGG -U-CCUU--- UN-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CU-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GG-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GGCGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- GU-UU-ACCC -GAC-G-ACG 3121 G-UGC-G-CU -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GG-CC A-CGGU-AGG CUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.blasti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter blastica. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter blastica. ORGANISM Rhodobacter blastica. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13478|g461294 Former RDP Sids: Rps.blast2 NCIMB 11576 = ATCC 33485 (T) = DSM 2131 NB: stretch of N's removed after position 87r, 220r, 465r & 1278r former name Rhodopseudomonas blastica BASE COUNT 312 a 296 c 403 g 252 t 3113 others ORIGIN 1 .......... .......... .......... .....ACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCUA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GU-GG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCC-C-AA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -CA-AG---- ---------- 1681 -(CAU-GN)- ---------- ---------- ---------- -------CUU -GUCGG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UG|--- ---------G ---GUAU--- CG.----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUA-CC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-GGA-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCAA-AAAN -GC-C-AUC- UCAGUUCGGA 2941 U-UGUCGUC- (UGCAAC-U- C)-GGCGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN8c 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN8c.. ACCESSION No information KEYWORDS No information. SOURCE clone JN8c. ORGANISM clone JN8c. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69273|g1177277 BASE COUNT 84 a 65 c 107 g 66 t 4054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-AC- 1261 A-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCU G-UUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GU-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUA -UUC-G-UGA 1741 CA--CA.... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SM2352 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK2352.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK2352. ORGANISM clone SMK2352. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78644|g509485 BASE COUNT 77 a 62 c 102 g 59 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-G..... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SM1973 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK1973.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK1973. ORGANISM clone SMK1973. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78637|g509478 BASE COUNT 83 a 68 c 107 g 64 t 4054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ......GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--N- N--CCU---- 661 ----UUGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.azofrmn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter azotoformans str. KA25. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter azotoformans str. KA25. ORGANISM Rhodobacter azotoformans. REFERENCE 1 AUTHORS Hiraishi,A., Keigo,M. and Ueda,Y. TITLE Molecular genetic analyses of Rhodobacter azotoformans sp. nov. and related species of phototrophic bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D70846|g1015334 isolate_name= KA25 BASE COUNT 339 a 330 c 442 g 275 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------NG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-G C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCUC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U UCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.azofrm2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter azotoformans str. SA16. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter azotoformans str. SA16. ORGANISM Rhodobacter azotoformans. REFERENCE 1 AUTHORS Hiraishi,A., Keigo,M. and Ueda,Y. TITLE Molecular genetic analyses of Rhodobacter azotoformans sp. nov. and related species of phototrophic bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D70847|g1015335 isolate_name= SA16 BASE COUNT 339 a 330 c 442 g 275 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------NG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-G C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 NG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 G-GA-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCUC A-GUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U UCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.sphaer3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter sphaeroides str. IL106. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides str. IL106. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16424 isolate_name= IL106 BASE COUNT 340 a 335 c 440 g 273 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC G-AUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G--CG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.sphaer2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter sphaeroides. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16425 BASE COUNT 339 a 334 c 441 g 275 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC G-AUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.sphrrnC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS Dryden,S.C. and Kaplan,S. TITLE operons of Rhodobacter sphaeroides Localization and structural analysis of the ribosomal RNA JOURNAL Nucleic Acids Res. 18, 7267-7277 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17023 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53855 ATCC 17023 = NCIMB 8287 (T) = NCIMB 8253 = ATCC 14690 = ATCC 11167 isolate_name= ATH 2.4.1 BASE COUNT 357 a 353 c 463 g 293 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC G-AUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.sphrrnA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS Dryden,S.C. and Kaplan,S. TITLE operons of Rhodobacter sphaeroides. Localization and structural analysis of the ribosomal RNA JOURNAL Nucleic Acids Res. 18, 7267-7277 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17023 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53853 ATCC 17023 = NCIMB 8287 (T) = NCIMB 8253 = ATCC 14690 = ATCC 11167 isolate_name= ATH 2.4.1 BASE COUNT 357 a 353 c 463 g 293 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC G-AUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rb.sphrrnB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ACCESSION No information KEYWORDS No information. SOURCE Rhodobacter sphaeroides str. ATH 2.4.1 ATCC 17023. ORGANISM Rhodobacter sphaeroides. REFERENCE 1 AUTHORS Dryden,S.C. and Kaplan,S. TITLE Localization and structural analysis of the ribosomal RNA operons of Rhodobacter sphaeroides. JOURNAL Nucleic Acids Res. 18, 7267-7277 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17023 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53854 ATCC 17023 = NCIMB 8287 (T) = NCIMB 8253 = ATCC 14690 = ATCC 11167 isolate_name= ATH 2.4.1 BASE COUNT 357 a 353 c 463 g 293 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-UC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GAUC| UUUC-AG-GU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-GA-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UCCC G-AUCUU-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------G ---CGAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CC -AA-CCUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CC-GA-CC A-CGGU-AGG AUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.3.2 RHODOVULUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.3.2 RHODOVULUM_SUBGROUP. ORGANISM 2.14.1.3.2 RHODOVULUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.MB253 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sp. str. MB253. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sp. str. MB253. ORGANISM Rhodovulum sp. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Isolation and characterization of Rhodovulum strictum sp. nov. and some other purple nonsulfur bacteria from colored blooms in tidal and seawater pools JOURNAL Int. J. Syst. Bacteriol. 45, 319-326 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32245|g514985 isolate_name= MB253 BASE COUNT 333 a 333 c 442 g 281 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -ACUA-C-GG 421 -AAU-AG-UC C--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---GUU---- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UUUC-GC-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GG-CU- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC A-GCCUG-GA GGU-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- GUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CUGU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCC---AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCUG-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C AGGGGG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.adria2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum adriaticum. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum adriaticum. ORGANISM Rhodovulum adriaticum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13476|g461297 ATCC 35885 (T) = BN 721 = DSM 2781 NB: stretch of N's removed after position 220r,1279r genbank entry has org. name as Rhodobacter adriaticus BASE COUNT 296 a 268 c 365 g 240 t 3207 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)...C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -ACUA-C-GG 421 -AAU-AG-UC C--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G..GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UUUC-GC-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-GU A-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .C-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GG-CU- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UN-C CA-GGG-C(- UC-A)A-CCC -UN-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC A-GCCUU-GA GGU-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)N ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- GUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------C ---CUGU--- C..----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| ACA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCAA-AAAN -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.adriat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum adriaticum. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum adriaticum. ORGANISM Rhodovulum adriaticum. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16418 Former RDP Sids: Rb.adriati DSM 2781 = BN 721 = ATCC 35885 (T) NB: former name Rhodobacter adriaticus BASE COUNT 332 a 333 c 441 g 285 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUA-C-GG 421 -AAU-AG-UC C--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UUUC-GC-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-GU A-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GG-CU- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UCUG A-UAC-UGGC A-GCCUG-GA GGU-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- GUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CUGU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CUCU--AAAA -AC-U-GUC- UCUGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCUG-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C AGGAGG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.euryhl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum euryhalinum str. KA-65 DSM 4868 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum euryhalinum str. KA-65 DSM 4868 (T). ORGANISM Rhodovulum euryhalinum. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 4868 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16426|g303815 Former RDP Sids: Rb.euryhal biol_source= shallow saline waters isolate_name= KA-65 NB: former name Rhodobacter euryhalinus BASE COUNT 341 a 328 c 439 g 275 t 2993 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(N -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UCNA A-AAC-UACC A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---GUAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG--A----- ---------- ---------- ---N(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CNCC--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCUG-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C AGGAGG-C-A G-CC-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.euryh2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum euryhalinum str. KA-65 DSM 4868 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum euryhalinum str. KA-65 DSM 4868 (T). ORGANISM Rhodovulum euryhalinum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 4868 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13479|g461299 biol_source= shallow saline waters isolate_name= KA-65 NB: stretch of N's removed after position 87r,220r,466r,1278r former name Rhodobacter euryhalinus BASE COUNT 293 a 260 c 350 g 231 t 3242 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCAA---A -GGUA-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-A--G UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..CCU---- 661 ----UUGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|..A-UU- 1261 G-GA-AAG|U UGG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-ACCA A-AAC-UACC A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-... .......... 1561 .......... ...(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -GC-AG---- ---------- 1681 -(-CA-UG)N ---------- ---------- ---------- -------CUG -UUCGG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UG|--- ---------U ---GUAU--- CG.----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUA-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCCA-AAAN -GC-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.MB-G2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sp. str. MB-G2. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sp. str. MB-G2. ORGANISM Rhodovulum sp. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16419|g303818 Former RDP Sids: Rb.spMB-G2 isolate_name= MB-G2 NB: former name Rhodobacter sp. BASE COUNT 334 a 336 c 441 g 276 t 2989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUGGG- A-A--CGU-G C-CCUU---C -UGUG-C-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-G--G UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -AC-GU-CGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGU 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UG|--- ---------U ---GUAU--- CGC----GGU 1981 -UCC-A--(- GAGA-)-UGG -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -UUUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.sulfi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sulfidophilus str. TW13. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sulfidophilus str. TW13. ORGANISM Rhodovulum sulfidophilus. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16422 Former RDP Sids: Rb.sulfid3 isolate_name= TW13 NB: former name Rhodobacter sulfidophilus 2 base differences with Rhv.sulfi4: 552n C/U; 573 G/U BASE COUNT 335 a 330 c 441 g 282 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGU A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.sulfid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sulfidophilum str. W4 DSM 1374. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sulfidophilum str. W4 DSM 1374. ORGANISM Rhodovulum sulfidophilum. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 1374 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16423|g303812 Former RDP Sids: Rb.sulfido DSM 1374 = LMG 5202 = ATCC 35886 (T) isolate_name= W4 NB: former name Rhodobacter sulfidophilus BASE COUNT 335 a 330 c 441 g 282 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGU A-GUCUA-GA GGU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.R2102 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone R2102.. ACCESSION No information KEYWORDS No information. SOURCE clone R2102. ORGANISM clone R2102. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89362 BASE COUNT 56 a 49 c 64 g 40 t 4167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .U-AAU-GG) -C-CUACC-A A|--CC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GGCGU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( -----ACAAG ---------) ---------- 1081 ---------- ---------- U-GA-CG--- A-GCG-A-CU G......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.sulfi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sulfidophilum str. TW13. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sulfidophilum str. TW13. ORGANISM Rhodovulum sulfidophilum. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16422 isolate_name= TW13 NB: 2 base differences with Rhv.sulfi3: 552n U/C; 573 U/G BASE COUNT 335 a 330 c 440 g 284 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.sulfi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sulfidophilum str. W12 DSM 2351. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sulfidophilum str. W12 DSM 2351. ORGANISM Rhodovulum sulfidophilum. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 2351 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16430|g303813 Former RDP Sids: Rb.sulfid2 isolate_name= W12 NB: former name Rhodobacter sulfidophilus BASE COUNT 337 a 331 c 438 g 283 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(A -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UCUG A-UAC-UGGU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UUUC-C--(- GAGA-)-GGA -AUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.sulfi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sulfidophilum str. W-4 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sulfidophilum str. W-4 (T). ORGANISM Rhodovulum sulfidophilum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Hirata,A. and Yamasato,K. TITLE Is intracytoplasmic membrane structure a generic criterion? It does not coincide with phylogenetic interrelationships among phototrophic purple nonsulfur bacteria JOURNAL Arch. Microbiol. 160, 358-362 (1993) STANDARD No information REFERENCE 2 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria alpha group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13475|g461296 isolate_name= W-4 (T) NB: stretch of N's removed after position 220r,1278r former name Rhodobacter sulfidophilus BASE COUNT 312 a 280 c 396 g 258 t 3130 others ORIGIN 1 .......... .......... .......... .....ACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA..... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .).G-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-NN- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UN-N CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)N ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --NN-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------C ---UGAU--- C..----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-N-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCU--AAAA -NG-CUGUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.MB263 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sp. str. MB263. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sp. str. MB263. ORGANISM Rhodovulum sp. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Isolation and characterization of Rhodovulum strictum sp. nov. and some other purple nonsulfur bacteria from colored blooms in tidal and seawater pools JOURNAL Int. J. Syst. Bacteriol. 45, 319-326 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32246|g514986 isolate_name= MB263 BASE COUNT 334 a 332 c 440 g 283 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UACC-C--(- GAGA-)-GGG -UUUCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhv.MB2602 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodovulum sp. str. MB260. ACCESSION No information KEYWORDS No information. SOURCE Rhodovulum sp. str. MB260. ORGANISM Rhodovulum sp. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Intrageneric structure of the genus Rhodobacter: Transfer of Rhodobacter sulfidophilus and related marine species to the genus Rhodovulum gen. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 15-23 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16420|g529094 isolate_name= MB260 BASE COUNT 335 a 335 c 436 g 281 t 2989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GANC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- ANCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUGGG- A-A--CGU-G C-CCUU---C -UCUG-C-GG 421 -AAU-AG-GC U--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(A -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -UC-GU-CGG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGA 1741 CA--CA---- --CC-(UAA- ---C)G-GA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---UGAU--- CGC----GGU 1981 UACC-C--(- GAGA-)-GGG -UUCCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-A |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AG-A A-CU-G-CCG --AU(-GA-U AA)-GUC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCC--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(AC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGG-GG-C-A G-CU-GG-CC A-CGGU-AAG CUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.4 HYPHOMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.4 HYPHOMONAS_GROUP. ORGANISM 2.14.1.4 HYPHOMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.MCS18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MCS18. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MCS18. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83809 isolate_name= MCS18 BASE COUNT 293 a 269 c 366 g 253 t 3195 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-N A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AG-CC C--------- ------UG-- G(-GAAA-)C -UGGG-U--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---NNC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--AUUC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......C-C CA-GGG-C(- UC-N)N-CCU -UG-G-AAU- 1321 -UGCC-UNUG A-AAC-UGUC A-GUCUU-GA GUU-----CA G-GA-GAGGU GAG-C|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------AG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -UU-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUN -GUUGG-UGA 1741 CG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---CGAU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----NG---| AUC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--ACU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGU-GG-G A-CC-G-CCG --GU(-GUGN CA)NGCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAGAG AGC------- --------(- 2881 ----)----- ---------- -----UNA-U CUCU--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.MCS6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MCS6. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MCS6. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83811 isolate_name= MCS6 BASE COUNT 320 a 290 c 403 g 275 t 3088 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACCUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------N-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-U--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---NNC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UN- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--AUUC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GA-UU- 1261 G-AU-AAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UNUG A-AAC-UGUC A-GUCUU-GA GUU-----CA G-GA-GAGGU GAG-C|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------AG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -UU-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUUGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---CGAU-C- GCG----GAU 1981 -CGC-A--(- GAGA-)-UGC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----NG---| AUC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--ACU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGU-GG-G A-CC-G-CCG --GU(-GU-C AA)-NCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACM AUGGC-A-GU -GA--CAGAG AGC------- --------(- 2881 ----)----- ---------- -----UNA-U CUCU--NAAA -AC-U-GUC- UCMGUUCGGA 2941 U-UGUCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.MCS10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MCS10. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MCS10. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83807 isolate_name= MCS10 BASE COUNT 338 a 325 c 432 g 293 t 2988 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACNC-NUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UG (--CU----- ---------- ---------- 241 --------UG -)CA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUAU---U -GGUU-C-GG 421 -AAU-AG-CC C--------- ------CG-- G(-GAAA-)C -UGGG-U--U UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AUAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-UN- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-RG- C-A---GU-G 901 AGG-AAUCUU G-GANAAU-- GG-GG-(GAA A)-CCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--AUUC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GA-UU- 1261 G-GU-CAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UNUG A-UAC-UGCC A-GUCUU-GA GUU-----CG G-GA-GAGGU GAG-C|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -UU-GU-CUG -GC-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUG -UUAGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---CAAU-C- GCG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----RG---| AUU-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CC-G-CCG --GU(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAGAG AGC------- --------(- 2881 ----)----- ---------- -----UNA-U CUCU--AAAA -AC-U-GUC- UCAGUUCGGA 2941 U-UGUCUUC- (UGCAAC-U- C)-GAAGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-UGGG A--GU-UNG- UU-CU-ACCC -GAA-G-AUG 3121 G-UGC-G-CU -NA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-AG-CC A-CGGU-AGG AUC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hir.baltic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hirschia baltica. ACCESSION No information KEYWORDS No information. SOURCE Hirschia baltica. ORGANISM Hirschia baltica. REFERENCE 1 AUTHORS Wolters,J. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52909 IFAM 1418 = DSM 5838 (T) = ATCC 49814 BASE COUNT 359 a 306 c 415 g 297 t 2999 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..AACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GCAG- 361 -A-CG-GG-U NAGU---AAC -GC-GUGGG- AAA--CGU-G C-CUUU---C -UCUA-C-GG 421 -AAU-AG-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---C-C-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAAG-- AUC---G-|G UCCGC----- -GU|----UA G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UUUC-AC-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 A-GU-AAG|U AAG---AGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCU A-GUCUA-GA GGA-----UA G-GA-GAGGU CAG-U|GGAA 1381 UA-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGUGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNACUG-- ---------- ---------- ---------G 1501 ACU--AU-UU CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -UU-GU-CAG -CA-AG---- ---------- 1681 -(-NN-NN)- ---------- ---------- ---------- -------NUU -GUUGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC CAC-CN-UUG ACA-UC|--- ---------C ---UAUG--- -CU----NAC 1981 -UCC-A--(- GAGA-)-UGG -A-GUA---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CAU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- -CG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UC-A |-UC--UCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCC --GA(-GU-C AA)-UCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-N-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGA------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGC-N-UN ---------- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.17a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 17a.. ACCESSION No information KEYWORDS No information. SOURCE clone 17a. ORGANISM clone 17a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89279 BASE COUNT 58 a 48 c 69 g 53 t 4148 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|....CU U--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UG-------- -----UC-AA 781 U-AG-C-UG| CA-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUCUU G-CACAAU-- GG-AG-(GAA A)-CUC-UCA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUC-GUUCG 1021 G-GG-GAA-- NA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGUC A-CCC..... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hym.spMHS3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hyphomonas sp. str. MHS3. ACCESSION No information KEYWORDS No information. SOURCE Hyphomonas sp. str. MHS3. ORGANISM Hyphomonas sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phyogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83812 isolate_name= MHS3 BASE COUNT 343 a 306 c 418 g 295 t 3014 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--AC----- ---------- ---------- 241 --------AU -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUA-C-GG 421 -AAU-AG-CU C--------- ------UU-- G(-GAAA-)C -GAGU-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--AUUC| UUUC-GC-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-GU A-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA A-GUCUG-GA GUU-----CA G-GA-GAGGU UAG-C|GGAA 1381 UA-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGUGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA C--AG-CU-- -------A|G -UU-GU-UGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GG-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGA------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCAGUUCAGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACNNNGCCC- GUC-ANA--- --UCA-UGGG A--AU-UGG- CU-CU-ACNN -GAA-G-ACG 3121 C-UGU-G-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hym.jannas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hyphomonas jannaschiana str. VP-1 ATCC 33882. ACCESSION No information KEYWORDS No information. SOURCE Hyphomonas jannaschiana str. VP-1 ATCC 33882. ORGANISM Hyphomonas jannaschiana. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33882 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83806 isolate_name= VP-1 BASE COUNT 332 a 295 c 404 g 277 t 3068 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGY-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--AY----- ---------- ---------- 241 --------AU -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GNNG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUA-C-GG 421 -AAU-AG-CU C--------- ------UU-- G(-GAAA-)C -GAGU-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CNN-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-NN- CGA------- -----UC-UA 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--NU-AG --)GG-UUGU AAA--AUUC| UUUC-GC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GN N-AA--GAAG ---------C 1141 -CCCGGCU-N ACUUC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-NAC- 1321 -UGCA-UUUG A-AAC-UGGA A-GUCUG-GA GUU-----CA G-GA-GAGGU UAG-C|GGAA 1381 UA-CCGAGU- GUA-GAG(-G UNAAA)-UUC -GU-AGAU-A UU-CGGUGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNAACUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------UG- C-NNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA C--AG-CU-- -------N|G -UU-GU-UGG -CA-GG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CCN -GUCGG-UGA 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GCUGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GNU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----NG---| AUC-GG-NGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-N 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CN-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GG-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-CU CAU-N-NN-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -GA--CAAUG GGA------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GC-U-GUC- UCNGUUCAGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC....... ..GUA----C 3061 ACACNGNNC- GNN-ACA--- --UCA-UGGG A--AU-NNG- CU-CU-ACNN -GAA-G-ACG 3121 C-UNU-G-CU -NA-C----- ---------- ---------- -----(---- -UUNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1094 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1094. str. SBR1094. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1094. str. SBR1094. ORGANISM str. SBR1094. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84522|g871643 isolate_name= SBR1094 BASE COUNT 93 a 83 c 121 g 67 t 4012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGG-GU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUU-C-GG 421 -AAU-AU-UC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G CAAUGCC-GA 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2040 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2040. str. SBR2040. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2040. str. SBR2040. ORGANISM str. SBR2040. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84579|g871700 isolate_name= SBR2040 BASE COUNT 91 a 84 c 119 g 68 t 4014 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -GGN-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUU-C-GG 421 -AAU-AU-UC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G CAAUGCC-GA 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1111 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1111. str. SBR1111. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1111. str. SBR1111. ORGANISM str. SBR1111. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84537|g871658 isolate_name= SBR1111 BASE COUNT 94 a 85 c 119 g 67 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... AGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUU-C-GG 421 -AAU-AU-UC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G CAAUGCC-GA 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1010 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1010. str. SBR1010. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1010. str. SBR1010. ORGANISM str. SBR1010. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84455|g871576 isolate_name= SBR1010 BASE COUNT 90 a 85 c 119 g 68 t 4014 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -GGC-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCNG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GCUU-C-GG 421 -AAU-AU-UC C--------- ------CG-- G(-GAAA-)C -UGGG-A--G CAAUGCC-GA 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A A|-GCC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--ACUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.5 ENV.SAR102_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.5 ENV.SAR102_GROUP. ORGANISM 2.14.1.5 ENV.SAR102_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK6.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK6. ORGANISM clone SMK6. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78651|g509492 BASE COUNT 59 a 57 c 64 g 45 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........C- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -ACUG-C-GG 421 -AAC-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------G ---UCU-(-- ---------C 541 CC-------- -)-GGA---C ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR102 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35460|g529971 library_source= Sargasso Sea bacterioplankton DNA BASE COUNT 331 a 292 c 397 g 276 t 3080 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--C AGAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U UAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -AGUA-C-GG 421 -AAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------A 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UA G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGCCGA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GU A-AA--GAAA ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-U-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUU A-AUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -UN-GU-UGG -AG-AG---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------CUC -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---GGAG--- UUU----GGU 1981 UAUC-A--(- GAGA-)-UGA -U-UCCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUC-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-A A-CU-G-CCU --GG(-GA-U GA)-CCA-G- -GAGG-A-AG 2761 G-CG-AGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAAG GGA-A-G-C- AA-UAG-G(G 2881 -CAA)CCUG- ---------- GA-GC-AA-A UCCCA-AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6 SPHINGOMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6 SPHINGOMONAS_GROUP. ORGANISM 2.14.1.6 SPHINGOMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.1 SPH.YANOIKUYAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.1 SPH.YANOIKUYAE_SUBGROUP. ORGANISM 2.14.1.6.1 SPH.YANOIKUYAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae.. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Wang,Y. and Lau,P.C.K. TITLE Sequence and expression of an isocitrate dehydrogenase-encoding gene from a polycyclic aromatic hydrocarbon oxidizer, Sphingomonas yanoikuyae B1 JOURNAL Gene in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37525|g1052981 BASE COUNT 351 a 324 c 438 g 293 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spQ1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. Q1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. Q1. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87167 isolate_name= Q1 BASE COUNT 360 a 333 c 450 g 298 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGC-U-CCC -(UACG)--G GAG-GC-NG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spSS3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. SS3 DSM 6432. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. SS3 DSM 6432. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6432 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87165 isolate_name= SS3 BASE COUNT 361 a 332 c 449 g 298 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-U--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-RG-( GU-AAA-GG) -C-YCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. B1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. B1. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Nohynek,L.J. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94099|g1150635 isolate_name= B1 BASE COUNT 359 a 332 c 448 g 297 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae.. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Wang,Y. and Lau,P.C.K. TITLE Sequence and expression of an isocitrate dehydrogenase-encoding gene from a polycyclic aromatic hydrocarbon oxidizer, Sphingomonas yanoikuyae B1 JOURNAL Gene in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37524|g1052980 BASE COUNT 356 a 330 c 446 g 298 t 2946 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13946|g870813 Former RDP Sids: Crb.lividm IFO 15163 = NCTC 10590 = IAM 14225 biol_source= Psychotria nairobiensis roots NB: former name Chromobacterium lividum BASE COUNT 344 a 318 c 419 g 285 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-N-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|NGAA 1381 UU-CCGAGU- NUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GG-A-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UNAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae str. B1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae str. B1. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Khan,A.A., Wang,R.-F., Cao,W.W., Franklin,W. and Cerniglia,C .E. TITLE Reclassification of apolycyclic aromatic hydrocarbon-metabolizing bacterium, Beijerinckia sp. strain B1, as Sphingomonas yanoikuyae by fatty acid analysis, protein pattern analysis, DNA-DNA hybridization, and 16S ribosomal DNA sequencing JOURNAL Int. J. Syst. Bacteriol. 46, 466-469 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85023|g706837 isolate_name= B1 BASE COUNT 361 a 333 c 454 g 297 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13728|g456234 BASE COUNT 351 a 330 c 438 g 296 t 2961 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCCC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C UG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CACA-GUG GGU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Moore,E.R.B., Wittich,R.M., Fortnagel,P. and Timmis,K.N. TITLE 16S ribosomal RNA gene sequence characterization and phylogenetic analysis of a dibenzo-p-dioxin degrading isolate within the new Genus Sphingomomas JOURNAL Lett. Appl. Microbiol. 17, 115-118 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72725 NB: method:PCR-amplified DNA BASE COUNT 327 a 302 c 407 g 269 t 3071 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GG-- UGGC-GGN-A -UGN-CN--N NNAC-NUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACURG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAR A)-GCC-UGA UCCA|NGCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-N-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGANA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--NN-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GNG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-C.). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-NCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-NC-GA-CC A-CAGC-GGG UUU-AG-CR- ACU-GGNG-U 3301 G---AAGUC- GUAA-CAAGG NNGCC-GNAG G(GGA-A)CC UGNNGC--UG GAUCANCUCN 3361 AA..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S56777 LMG 11252 (T) = CCUG 28380 geog_source= Copenhagen biol_source= human BASE COUNT 72 a 61 c 81 g 54 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G -AG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.yanoi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas yanoikuyae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas yanoikuyae. ORGANISM Sphingomonas yanoikuyae. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16145 BASE COUNT 362 a 331 c 454 g 299 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-AGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CAG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUUGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GGAN A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GGAGG ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- UCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spCFO6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. CFO6. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. CFO6. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Feng,X.H, Kahn,M.L., Ou,L.T. and Ogram,A.V. TITLE Phylogenetic analysis of the carbofuran-degrading bacterium CFO6 JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U52146|g1277181 geog_source= Puyallup, WA biol_source= soil isolate_name= CFO6 BASE COUNT 362 a 333 c 455 g 301 t 2925 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-GAC-UGGA U-UGCUU-GA AUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--GG-CA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-CUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------AGU -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAG-U- AUG----GAU 1981 -UGU-G--(- GAGA-)-CAC -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.chlor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas chlorophenolica str. SR3. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas chlorophenolica str. SR3. ORGANISM Sphingomonas chlorophenolica. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87162 isolate_name= SR3 BASE COUNT 350 a 330 c 449 g 293 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GN-(GNN A)-NCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUY-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GUG-C(- UC-A)A-CAC -CG-G-AAC- 1321 -UGCC-CUUG A-GAC-UGGA U-UGCUU-GA AUC-----AC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--UG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GYG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.chloro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas chlorophenolica. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas chlorophenolica. ORGANISM Sphingomonas chlorophenolica. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87161 BASE COUNT 355 a 334 c 456 g 296 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GY-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GUG-C(- UC-A)A-CAC -CG-G-AAC- 1321 -UGCC-CUUG A-GAC-UGGA U-UGCUU-GA AUC-----AC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--UG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spSS86 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. SS86. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. SS86. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16148 isolate_name= SS86 BASE COUNT 352 a 339 c 463 g 294 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GUG-C(- UC-A)A-CAC -CG-G-AAC- 1321 -UGCC-CUUG A-GAC-UGGA U-UGCUU-GA AUC-----AC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--UG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-CGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CGU -UUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GGAN A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G--U -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG G......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.flava 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas flava. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas flava. ORGANISM Sphingomonas flava. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87163 NB: ATCC 39723? instead of ATCC 29723 BASE COUNT 348 a 331 c 452 g 295 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......ARC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GU--- AGUG-GCRC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GAC---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 UA-A------ -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GUG-C(- UC-A)A-CAC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUU-GA AUC-----AC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--UG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAG-U- GUG----GAU 1981 -UGU-G--(- GAGA-)-CAC -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-CCG-U(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.flava2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas flava str. RA2 DSM 8671. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas flava str. RA2 DSM 8671. ORGANISM Sphingomonas flava. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 8671 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87164 isolate_name= RA2 BASE COUNT 349 a 332 c 453 g 294 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GAC---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 UA-A------ -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GUG-C(- UC-A)A-CAC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUU-GA AUC-----AC G-GA-GAGGU GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCACUG-- ---------- ---------- ---------G 1501 ACG--UG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAG-U- GUG----GAU 1981 -UGU-G--(- GAGA-)-CAC -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-CCG-U(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GNAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.DhA_33 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. DhA-33. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. DhA-33. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Mohn,W.W. JOURNAL Appl. Environ. Microbiol. 61(6) in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22538|g862661 (bases 1 to 346) isolate_name= DhA-33 BASE COUNT 181 a 178 c 233 g 141 t 3643 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------UU-- G(-GAAA-)C -GGAC-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GA... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhz.spWI4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizomonas sp. str. WI4. ACCESSION No information KEYWORDS No information. SOURCE Rhizomonas sp. str. WI4. ORGANISM Rhizomonas sp. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S57491 isolate_name= WI4 BASE COUNT 69 a 64 c 82 g 52 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----CA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)---CCC -AGA-C-UCC -(UACG)--- GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis.. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37341|g1051193 BASE COUNT 350 a 327 c 448 g 300 t 2951 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UU-GG-( GU-AAA-GG) -C-UGACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-GAC-UGGA U-UGCUU-GA ACA-----UC G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACG--AU-UG UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -AG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- GA-CCA-U(G 2881 -CGA)GUGG- ---------- AA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis.. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Nohynek,L.J. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94100|g1150617 BASE COUNT 350 a 326 c 448 g 296 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CG U--------- ------CG-- G(-GAAA-)C -UGAC-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UU-GG-( GU-AAA-GG) -C-UGACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-GAC-UGGA U-UGCUU-GA ACA-----UC G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACG--AU-UG UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GG-UGC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------CAU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- GA-CCA-U(G 2881 -CGA)GUGG- ---------- AA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.2 ZYM.MOBILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.2 ZYM.MOBILIS_SUBGROUP. ORGANISM 2.14.1.6.2 ZYM.MOBILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.UN1F1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. UN1F1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. UN1F1. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37345|g1051197 isolate_name= UN1F1 BASE COUNT 349 a 331 c 442 g 298 t 2956 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A--C (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUA-GA AUC-----UU G-GA-GAGGC GGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CUGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UGG -GA-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- CA-CUC-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-CGUUCUC- (UGCAAC-U- C)-GAGAGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -CGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spHH69 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. HH69 DSM 7135. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. HH69 DSM 7135. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Moore,E. TITLE Genetic and serological evidence for the recognition of four pentachlorophenol-degrading bacterial strains as a species of the genus Sphingomonas JOURNAL Syst. Appl. Microbiol. 18, 539-548 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 7135 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87166 isolate_name= HH69 BASE COUNT 320 a 309 c 404 g 274 t 3069 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......ACU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUA-C-GG 421 -AAU-AA-CN C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GU 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-N 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAR A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGRG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U YAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAY- 1321 -UGCC-UUUR A-GAC-UGGA U-UGCUW-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-G--CUC -GGGCAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UNNU... ...----... 1981 ....-...(- GAGA.).... .......U.. UCG....... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 ...GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AK-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-R A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-W-G-C- AA-YCC-Y(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GY-GGA-(UC -AGN-AU)-U CCS-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGUCC- GUC-ACW--- --CCA-UGGG A--GU-UNG- AU-US-ACUC -GAA-G-GCR 3121 C-UCC-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCCA....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.UN1F2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. UN1F2. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. UN1F2. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37346|g1051198 isolate_name= UN1F2 BASE COUNT 350 a 326 c 442 g 290 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--U------ ---------- ---------- 241 ---------G -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-NA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAN-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ANG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-G--CUG -GGGCAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----GAU 1981 -UUC-A--(- GAGA-)-UGA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-A-G-C- AA-CCG-C(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC CUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 C-UGC-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-GU-GA-CC A-CGGU-GGG NUU-AG-AG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.C7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. C7. str. C7. ACCESSION No information KEYWORDS No information. SOURCE str. C7. str. C7. ORGANISM str. C7. REFERENCE 1 AUTHORS Govindaswami,M., Schmidt,T.M., White,D.C. and Loper,J.C. TITLE Phylogenetic analysis of a bacterial aerobic degrader of azo dyes JOURNAL J. Bacteriol. 175, 6062-6066 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22759 isolate_name= C7 BASE COUNT 351 a 324 c 438 g 295 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......UAC -GAAC-GC-- UGGC-GGC-A -UGC--U--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GGCU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-G-G-C(- UC-A)A-CCC -C--G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-G--CCG -GGGCAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----GAU 1981 -UUC-A--(- GAGA-)-UGA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAG--A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-CCG-U(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 C-UGC-G-UU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGA-C-A G-GU-GA-CC A-CGGU-GGG UUU-AG-AG- ACU-GGGG-U 3301 G---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spBN6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. BN6. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. BN6. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Nohynek,L.J. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94098|g1150636 isolate_name= BN6 BASE COUNT 357 a 331 c 450 g 300 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -UGAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-UGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-G--UCC -GGGCAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGU -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----GAU 1981 -UUC-A--(- GAGA-)-UGA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-CCG-U(G 2881 -CGA)GCGG- ---------- UA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--UU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 C-UGC-G-UU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGA-C-A G-GU-GA-CC A-CGGU-GGG UUU-AG-AG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spSYK6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. SYK6. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. SYK6. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16149 isolate_name= SYK6 BASE COUNT 359 a 333 c 455 g 298 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGGA U-AGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------AAU -UCGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GGAN A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-A-G-C- UA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG AUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spA175 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. A175. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. A175. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Nohynek,L.J. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94101|g1150616 isolate_name= A175 BASE COUNT 353 a 337 c 454 g 296 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-NCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-N C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GU 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- U--CCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GN- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 G-GU-AAG|U UAG---AGGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAU- 1321 -AGCC-UUUA A-GAC-UGUC U-CGCUU-GA ACG-----UC G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACG--AC-UG UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G CUU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU---)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGG..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spRW1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. RW1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. RW1. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Moore,E.R.B., Wittich,R.M., Fortnagel,P. and Timmis,K.N. TITLE 16S ribosomal RNA gene sequence characterization and phylogenetic analysis of a dibenzo-p-dioxin degrading isolate within the new Genus Sphingomomas JOURNAL Lett. Appl. Microbiol. 17, 115-118 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72723 isolate_name= RW1 NB: method:PCR-amplified DNA BASE COUNT 328 a 316 c 417 g 273 t 3042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUA-C-GG 421 -AAU-AA-CU C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GU 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U UAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUA A-GAC-UGCA U-CGCUU-GA ACG-----UC G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACG--AC-UG UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-RU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-GU-UUG ACA-U-|--- ---------C ---CUAG-U- AUG----GAU 1981 -CGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---C... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ....CG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CUCC-AAAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GNN 3121 N-NNN-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK271 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK271.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK271. ORGANISM clone SMK271. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78646|g509489 BASE COUNT 63 a 51 c 62 g 50 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .....GCGC- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGG- A-A--UAU-G C-CUUU---U -GGUA-C-GG 421 -AAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GU 481 AU-GG----- ---------- ---------- ---------- ---UCC-(-- --------CU 541 UC-------- -)-GGG---- ---------- ----UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAAG-- AUU---A-|G CCCGC----- -AC|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zym.mobilp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zymomonas mobilis subsp. pomaceae ATCC 29192. ACCESSION No information KEYWORDS No information. SOURCE Zymomonas mobilis subsp. pomaceae ATCC 29192. ORGANISM Zymomonas mobilis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information BASE COUNT 368 a 320 c 442 g 300 t 2946 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NGAACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CUUC---A -GGUA-C-GG 421 -AAU-AA-CU A--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-GAC---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGUU A-GACUA-GA ACA-----UA G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 UCU--AU-AG UUGACG-CUG AG-G------ -------UA- C-NNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UAU -CUGGG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UGAU-C- GCG----GGG 1981 -AGU-G--(- GAGA-)-CAC -A-CCCUU-- UC-------- ---AG----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAA-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGU-C-G-C- AA-GCC-U(G 2881 -CAA)AGGU- ---------- AA-GCUAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 C-UGC-A-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-U-A G-GC-GA-CC A-CGGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zym.mobili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zymomonas mobilis subsp. mobilis ATCC 10988. ACCESSION No information KEYWORDS No information. SOURCE Zymomonas mobilis subsp. mobilis ATCC 10988. ORGANISM Zymomonas mobilis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS ATCC 10988 = NCIMB 8938 (T) = NRRL B-806 BASE COUNT 372 a 320 c 440 g 299 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NGAACUUG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CUUC---A -GGUA-C-GG 421 -AAU-AA-CU A--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-GAC---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-NGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-GAC-UGUU A-GACUA-GA ACA-----UA G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 UCU--AU-AG UUGACG-CUG AG-G------ -------UA- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UAU -CUGGG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UGAU-C- GCG----GAA 1981 -AGU-G--(- GAGA-)-CAC -A-UUCUU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CC--UCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGA-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGC-C-G-C- AA-GCC-U(G 2881 -CAA)AGGU- ---------- UA-GCUAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-GGG UUU-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD26 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26213|g498414 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 70 c 81 g 61 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-UCU-C(G 2881 -CAA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.3 SPG.PAUCIMOBILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.3 SPG.PAUCIMOBILIS_SUBGROUP. ORGANISM 2.14.1.6.3 SPG.PAUCIMOBILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.asacch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas asaccharolytica str. Y-345 IFO 15499 (T). ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas asaccharolytica str. Y-345 IFO 15499 (T). ORGANISM Sphingomonas asaccharolytica. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28573|g862615 (bases 1 to 202) biol_source= apple tree roots isolate_name= Y-345 BASE COUNT 156 a 144 c 202 g 127 t 3747 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 ......GG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... ......CAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA -UGGC-G-AC -UA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pruni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas pruni str. Y-250 IFO 15498 (T). ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas pruni str. Y-250 IFO 15498 (T). ORGANISM Sphingomonas pruni. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28570|g862612 (bases 1 to 202) biol_source= Prunus persica roots isolate_name= Y-250 BASE COUNT 155 a 143 c 203 g 128 t 3747 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 ......GG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... ......CAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA -UGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.mali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas mali str. Y-347 IFO 15500 (T). ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas mali str. Y-347 IFO 15500 (T). ORGANISM Sphingomonas mali. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28576|g862618 (bases 1 to 202) biol_source= apple tree roots isolate_name= Y-347 BASE COUNT 155 a 143 c 204 g 127 t 3747 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 ......GG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... ......CAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA -UGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.subvib 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter subvibrioides str. CB81. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter subvibrioides str. CB81. ORGANISM Caulobacter subvibrioides. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83797 isolate_name= CB81 BASE COUNT 348 a 333 c 443 g 293 t 2959 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---RAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU C--------- ------GC-- C(-GAAA-)G -GCGU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--NNU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-GC-GA-CC A-CGGU-GGG CUU-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.truepr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas trueperi. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas trueperi. ORGANISM Sphingomonas trueperi. REFERENCE 1 AUTHORS Kampfer,P., Denner,E.B., Meyer,S., Moore,E.R. and Busse,H.J . TITLE Classification of 'Pseudomonas azotocolligans' Anderson 1955, 132, in the genus Sphingomonas as Sphingomonas trueperi sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (2), 577-583 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97776|g2108335 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 357 a 344 c 458 g 301 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CUUG---G -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -GGC-A--(- GAGA-)-UGC -C-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-AC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-U- U-AAA-GU-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CUCA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GAGAGG-C-A G-GC-GA-CC A-CGGU-GGG CUU-AG-CG- ACU-GGGG-U 3301 G---AANUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.BF14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter sp. str. BF14 ?. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter sp. str. BF14 ?. ORGANISM Blastobacter sp. REFERENCE 1 AUTHORS Hugenholtz,P., Gwilliam,H.G. and Fuerst,J.A. TITLE Phylogenetic characterization of bacterial communities which colonize and form a biofilm on cooling coil fins in an air-handling system JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z23157|g951309 isolate_name= BF14 ? BASE COUNT 357 a 339 c 449 g 298 t 2933 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U AAG---AGGU G-AAA-GC-C UG-GUG-C(- UC-A)A-CAC -CA-G-AAC- 1321 -UGCC-UUUU A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCG-G--(- GAGA-)-CCG -A-UCUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-UCC-C(G 2881 -CAA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.adhae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas adhaesiva. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas adhaesiva. ORGANISM Sphingomonas adhaesiva. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16146 BASE COUNT 350 a 339 c 461 g 290 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- NN-------- ---NN----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GGAN A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-UCC-A(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-GC-GA-CC A-CGGU-GGG CUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.adhaes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas adhaesiva. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas adhaesiva. ORGANISM Sphingomonas adhaesiva. REFERENCE 1 AUTHORS Moore,E.R.B., Wittich,R.M., Fortnagel,P. and Timmis,K.N. TITLE 16S ribosomal RNA gene sequence characterization and phylogenetic analysis of a dibenzo-p-dioxin degrading isolate within the new Genus Sphingomomas JOURNAL Lett. Appl. Microbiol. 17, 115-118 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72720 NB: method:PCR-amplified DNA BASE COUNT 321 a 324 c 416 g 279 t 3036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -SNAN-NC-- UGGC-VGG-A -UGC-CU--R ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GS-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CS-SG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--S- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G NAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CC G-GA-GAGGU GAU-U|GGAA 1381 UU-CCRAGU- GUA-GAN(-G UGANA)-UUC -GC-GGAU-A UU........ .......... 1441 .......(.. ....)..... .......G-- ---------- ---------- ---------G 1501 NCC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GNG-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GN-CAC--- ---------- 1681 -(-NN-G-)- ---------- ---------- -N-------- -------UGU -UNGGN-UGN 1741 CG--CA---- --GN-(NAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-NNGAGUAC 1801 GGC-C---(N NNN)---N-N UN-AANACUC -AAA-GGAAU UG-ACGG... .......... 1861 .......... .......... .......... .........G -(ANGNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AAGGC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGUG GGC-U-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCS-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- RU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CY -AA-CCYR-- ---------- ---------- -----(---- -SCAR----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------W RGGARG-C-N G-GC-GA-CC A-CGGU-GGG UUC-AG-MG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.sangui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sanguis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sanguis. ORGANISM Sphingomonas sanguis. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13726|g456232 BASE COUNT 342 a 335 c 442 g 287 t 2970 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GN-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CN N--------- ------NN-- N(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUC--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGAAGG-C-A G-GC-GACCC A-CGGU-GGG UU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.ppauci 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas parapaucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas parapaucimobilis. ORGANISM Sphingomonas parapaucimobilis. REFERENCE 1 AUTHORS Moore,E.R.B., Wittich,R.M., Fortnagel,P. and Timmis,K.N. TITLE 16S ribosomal RNA gene sequence characterization and phylogenetic analysis of a dibenzo-p-dioxin degrading isolate within the new Genus Sphingomomas JOURNAL Lett. Appl. Microbiol. 17, 115-118 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72721 NB: method:PCR-amplified DNA BASE COUNT 309 a 310 c 391 g 265 t 3101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GANY-GC-- UGNC-GUC-A -UGC-CU--A ACAY-AUNCA A-NUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|UUU--- AGUG-GCGC- 361 -A-CG-GG-U CCGU---AAC -KC-GUGGG- A-A--UCU-G C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 GA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GW|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--NCCC -AGU-C-UCC .(....)... .......... ..A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUYG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-NGN-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -NU-GU-CCG -GG-CAC--- ---------- 1681 -(-UN-K-)- ---------- ---------- -N-------- -------USC -UUG...... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... ........GC A-U-GU-GGU -UUANUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AYU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-YCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-NC-GA-CC A-NGNU-GGN GUC-AG-CG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.ppauc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas parapaucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas parapaucimobilis. ORGANISM Sphingomonas parapaucimobilis. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13724|g456230 NB: nucs beyond 1465r removed; bad sequence BASE COUNT 343 a 332 c 435 g 288 t 2978 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG--A--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CN N--------- ------NN-- N(-GAAA-)C -GGCU-G--C UAAUACC-UG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 UA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CCGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.paucim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Moore,E.R.B., Wittich,R.M., Fortnagel,P. and Timmis,K.N. TITLE 16S ribosomal RNA gene sequence characterization and phylogenetic analysis of a dibenzo-p-dioxin degrading isolate within the new Genus Sphingomomas JOURNAL Lett. Appl. Microbiol. 17, 115-118 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72722 ATCC 29837 (T) = DSM 1098 = NCTC 11030 = NCPPB 3838 = CCUG 6518 = LMG 1227 (T) NB: method:PCR-amplified DNA BASE COUNT 312 a 326 c 387 g 277 t 3074 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNNN-NGC-A -UGC-CU--N ACAC-AUGCA A-GUC-NAAC 121 N--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAU -GC-GUNNN- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-NAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 AA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-N-A 841 (CUGA-GN-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-NNCAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCNN UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG N-)GG-UUGU NNN--GCUC| UUUU-AC-CC 1021 --GG-GNA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-N-NA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGN N-NAA-UG-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUU A-GAC-UGCA U-YGCUU-NA AUC-----CA G-GA-GAGG- CAG..|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .U-GGN-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-NNNAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGNUGN-AGC A-U-GU-GGU -UUAAUU-CG N(AAGCAA-C G)--CGCGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- NG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|NG C-U---CNGU |GU-C(NGUG A)NGAUGUNU 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G. .......... 2761 .......... UG-ACG--UC -A-AGUC-CU CAU-G-GCNC CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC-AAAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Former RDP Sids: F.devorans ATCC 10829 = NRRL B-54 NB: former name "Flavobacterium" devorans BASE COUNT 353 a 333 c 443 g 287 t 2960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UAGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UA| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UNC -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--NU-AG --)GG-UUGU AAA--GCUN| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-NU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGACUG-- ---------- ---------- ---------G 1501 ACU--GG-NA UUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GN-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--NUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CU UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20776|g677941 (bases 1 to 1231) complement ATCC 29837 (T) = DSM 1098 = NCTC 11030 = NCPPB 3838 = CCUG 6518 = LMG 1227 (T) BASE COUNT 301 a 284 c 384 g 256 t 3151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NNA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|N-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--ACAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13725|g456231 BASE COUNT 352 a 331 c 435 g 291 t 2967 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GN-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CN N--------- ------NN-- N(-GAAA-)C -GGCU-G--C UAAUACC-UG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------CG 541 UA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- AA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--A| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA-CC A-CGGU-GGA UUN-AG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37337|g1051189 ATCC 29837 (T) = DSM 1098 = NCTC 11030 = NCPPB 3838 = CCUG 6518 = LMG 1227 (T) BASE COUNT 347 a 337 c 443 g 287 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CGG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC-AAAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUGUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA-CC A-CGGU-GGG UUC-AG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16144 BASE COUNT 355 a 342 c 457 g 291 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-GAC-UGCA U-CGCUU-GA AUC-----CA G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---UAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GGAN A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--CC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGUG GGC-A-G-C- GA-CCC-U(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CCCC--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 U-UGC-G-CC -AA-CCUA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAAG-C-A G-GC-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.pauci4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas paucimobilis. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas paucimobilis. ORGANISM Sphingomonas paucimobilis. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S56776 LMG 1227 (T) = DSM 1098 = NCTC 11030 = NCPPB 3838 = ATCC 29837 (T) = CCUG 6518 BASE COUNT 69 a 63 c 82 g 53 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GCCU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------GC 541 GA-------- -)-GAU---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAGG-- AUG---A-|G CCCGU----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(- -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--- GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.4 RHZ.SUBERIFACIENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.4 RHZ.SUBERIFACIENS_SUBGROUP. ORGANISM 2.14.1.6.4 RHZ.SUBERIFACIENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhz.subfa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizomonas suberifaciens. ACCESSION No information KEYWORDS No information. SOURCE Rhizomonas suberifaciens. ORGANISM Rhizomonas suberifaciens. REFERENCE 1 AUTHORS Takeuchi,M., Sawada,H., Oyaizu,H. and Yokota,A. TITLE Phylogenetic evidence for Sphingomonas and Rhizomonas as nonphotosynthetic members of the alpha-4 subclass of the Proteobacteria JOURNAL Int. J. Syst. Bacteriol. 44, 308-314 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13737|g487921 IFO 15211 (T) = NCPPB 3629 = ATCC 49355 BASE COUNT 360 a 324 c 434 g 297 t 2961 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-AAC-UAGA U-AGCUA-GA AUC-----UG G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AG-AA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CUG -GG-UUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AAC -UUAGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-U---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AAA-GG-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- UA-ACU-C(G 2881 -CGA)GAGU- ---------- AU-GCUAA-U CUCU--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GG-GA-CC A-CG---GUG GGU-U..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhz.subfac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizomonas suberifaciens str. CA1T. ACCESSION No information KEYWORDS No information. SOURCE Rhizomonas suberifaciens str. CA1T. ORGANISM Rhizomonas suberifaciens. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S57495 isolate_name= CA1T BASE COUNT 73 a 61 c 76 g 52 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)CG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GA 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-G-AU ----GA-U-- CAG-C|C-AC -ACUGG---A 841 (CUGA-GA-C ACG)----CC -AGA-C-UC- -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK270 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK270.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK270. ORGANISM clone SMK270. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78645|g509487 BASE COUNT 94 a 76 c 112 g 78 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GC-U---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GN----- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AC- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)--CG-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)G--UUGU -AA--GCUC| UUUN-AC-CA 1021 ---G-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CGU-A-GA U-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD23 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26210|g498411 library_source= unidentified soil bacterium from paddy field BASE COUNT 67 a 69 c 79 g 60 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-UC--UUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2032 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2032. str. SBR2032. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2032. str. SBR2032. ORGANISM str. SBR2032. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84571|g871692 isolate_name= SBR2032 BASE COUNT 93 a 82 c 117 g 71 t 4013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--G ACNC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -NC-GUGGG- A-A--UCU-G C-CCUU---A -GGUA-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GU 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UC 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G NC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.natatr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter natatorius. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter natatorius. ORGANISM Blastobacter natatorius. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Syst. Appl. Microbiol. 17, 51-57 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73043|g505527 ATCC 35951 = ACM 2507 BASE COUNT 359 a 343 c 439 g 300 t 2935 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UU 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-N CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-NC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGA U-GGCUU-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 AC-CCA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|A -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------GAC -UUGGG-UGG 1741 CG--CA---- --NC-(UUA- ---C)C-CA- UUAA-GUUAU C|C|N-CCU- G-GGGAGUAC 1801 GGU-C---(C CCA)---G-A UU-AAAACUC -CAA-GGGAU UG-GCGGG-G -G-C-CU--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGG -UUAAUU-CG -(AAACCA-C G)--CGCAGA 1921 A-CCUUA-CC ANC-GU-UUG ACA-UG|--- ---------U ---CUAG-U- AUG----UUU 1981 -CCC-A--(- GAGA-)-UGG -G-GGACU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(GUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-UC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG AGC-A-G-C- UA-GAU-C(G 2881 -CGA)GAUC- ---------- AU-GCUAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GCAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spB477 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. B477. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. B477. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20772|g677937 isolate_name= B477 BASE COUNT 139 a 136 c 167 g 131 t 3803 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......A-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------AAC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------U ---CUAG-U- AUG----UUU 1981 -CCC-A--(- GAGA-)-UGG -G-UUACU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CUA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-A A-CC-G-CCG --GU(-GA-U AA)-NCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG AGC-A-G-C- UA-GAU-C(G 2881 -CGA)GAUC- ---------- AU-GCUAA-U CUCN--CAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B274 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B274. str. B274. ACCESSION No information KEYWORDS No information. SOURCE str. B274. str. B274. ORGANISM str. B274. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13132|g495579 isolate_name= B274 BASE COUNT 56 a 71 c 78 g 44 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .UGGC-G-GU -GA--CAGUG GGC-A-G-C- CA-CUA-C(G 2881 -CGA)GUAG- ---------- GA-GCUAA-U CCCC--AAAA -GC-C-GUC- UCCGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-GC- 3121 --UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-GGG AUNCAGCAG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.5 SPG.SUBARCTICA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.5 SPG.SUBARCTICA_SUBGROUP. ORGANISM 2.14.1.6.5 SPG.SUBARCTICA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.subar3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas subarctica str. NKF1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas subarctica str. NKF1. ORGANISM Sphingomonas subarctica. REFERENCE 1 AUTHORS Nohynek,L.J., Nurmiaho-Lassila,E.L., Suhonen,E.L., Busse,H.J ., Mohammadi,M., Hantula,J., Rainey,F. and Salkinoja-Salonen ,M.S. TITLE Description of chlorophenol-degrading Pseudomonas sp. strains KF1, KF3 and NKF1 as a new species of Sphingomonas, Sphingomonas subarctica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 1042-1055 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94104|g1150633 isolate_name= NKF1 BASE COUNT 354 a 330 c 451 g 297 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UAC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------C ---CGGU-C- GCG----GAU 1981 -UUG-G--(- GAGA-)-CCA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.subarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas subarctica str. KF1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas subarctica str. KF1. ORGANISM Sphingomonas subarctica. REFERENCE 1 AUTHORS Nohynek,L.J., Nurmiaho-Lassila,E.L., Suhonen,E.L., Busse,H.J ., Mohammadi,M., Hantula,J., Rainey,F. and Salkinoja-Salonen ,M.S. TITLE Description of chlorophenol-degrading Pseudomonas sp. strains KF1, KF3 and NKF1 as a new species of Sphingomonas, Sphingomonas subarctica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 1042-1055 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94102|g1150627 isolate_name= KF1 BASE COUNT 354 a 330 c 451 g 297 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UAC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------C ---CGGU-C- GCG----GAU 1981 -UUG-G--(- GAGA-)-CCA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.subar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas subarctica str. KF3. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas subarctica str. KF3. ORGANISM Sphingomonas subarctica. REFERENCE 1 AUTHORS Nohynek,L.J., Nurmiaho-Lassila,E.L., Suhonen,E.L., Busse,H.J ., Mohammadi,M., Hantula,J., Rainey,F. and Salkinoja-Salonen ,M.S. TITLE Description of chlorophenol-degrading Pseudomonas sp. strains KF1, KF3 and NKF1 as a new species of Sphingomonas, Sphingomonas subarctica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 1042-1055 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94103|g1150628 isolate_name= KF3 BASE COUNT 354 a 330 c 451 g 297 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UAC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------C ---CGGU-C- GCG----GAU 1981 -UUG-G--(- GAGA-)-CCA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.UN1P1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. UN1P1. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. UN1P1. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37347|g1051199 isolate_name= UN1P1 BASE COUNT 350 a 329 c 445 g 295 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GAG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGN- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-NA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UAC -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------C ---CGGU-C- GCG----GAU 1981 -UUG-G--(- GAGA-)-CCA -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-UCUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.rosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas rosa. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas rosa. ORGANISM Sphingomonas rosa. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13945|g870812 Former RDP Sids: Ag.rhizog3 IFO 15208 (T) = NCPPB 2661 = IAM 14222 NB: former name Agrobacterium rhizogenes BASE COUNT 344 a 317 c 417 g 283 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-AC- 1261 A-UC-AAG|U CAG---GGGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UAGU G-UACUA-GA AUC-----UU G-GA-GAGGC GGG-U|GGAA 1381 UU-CCGAGU- NUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCGNUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------UGC -UUGGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UCAU-C- GCG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUN GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUNU- ---------- NA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spB522 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. B522. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. B522. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20774|g677939 isolate_name= B522 BASE COUNT 135 a 143 c 174 g 124 t 3800 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... ......UA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GU-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGA -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spB695 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. B695. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. B695. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20755|g677935 (bases 1 to 1194) complement isolate_name= B695 BASE COUNT 303 a 272 c 371 g 246 t 3184 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-AGCUG-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 NC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|A -CU-GU-CCG -GU-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGA -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AG-GU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spF199 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. F199. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. F199. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20756|g677936 (bases 1 to 1194) complement isolate_name= F199 BASE COUNT 302 a 271 c 371 g 247 t 3185 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGGG-- AUG---A-|N CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-AGCUG-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GU-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGA -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--C 1861 C-A--CA-AG CGGUGG-ACG A-U-GU-GGU -UUAAUU-GG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AG-GU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-UGA |---C|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.spB478 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas sp. str. B478. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas sp. str. B478. ORGANISM Sphingomonas sp. REFERENCE 1 AUTHORS Fredrickson,J.K., Balkwill,D.L., Drake,G.R., Romine,M.F., Ringelberg,D.B. and White,D.C. TITLE Aromatic-degrading Sphingomonas isolates from the deep subsurface JOURNAL Appl. Environ. Microbiol. 61, 1917-1922 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20773|g677938 isolate_name= B478 BASE COUNT 132 a 140 c 172 g 124 t 3808 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... ......UA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGU -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----AUC 1981 -ACA-A--(- GAGA-)-UUG -U-GAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G N-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAN -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CC-G-CCG --GU(-GA-U AA)-NCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(N 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.capsu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas capsulata. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas capsulata. ORGANISM Sphingomonas capsulata. REFERENCE 1 AUTHORS Oyaizu,H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16147 BASE COUNT 360 a 334 c 456 g 293 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UU 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUG-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GGCA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGU -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----AUA 1981 -UCG-A--(- GAGA-)-UCG -A-UA-GU-- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- UAAAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GA-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACUC -GAA-G-GCG 3121 U-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.capsul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas capsulata. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas capsulata. ORGANISM Sphingomonas capsulata. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59296 Former RDP Sids: F.capsulat ATCC 14666 = JCM 7508 (T) = NCIMB 9890 = DSM 31096 = IFO 12533 = DSM 30196 = CCUG 17697 = LMG 2830 (T) biol_source= stocked distilled water NB: former name: "Flavobacterium" capsulatum BASE COUNT 346 a 331 c 445 g 290 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNACCUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UU 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GNU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-UA- 1261 C-UC-AAG|U CAG---AGGU G-AAA-GC-G CG-GGG-C(- UC-A)A-CCC -CG-N-NAC- 1321 -UGCC-UUUG A-AAC-UAGG U-GACUG-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGU -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---CGCG--- -CU----AUA 1981 -UCG-A--(- GAGA-)-UCG -A-UNNGU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GG-NGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CN NUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACNC -GAA-G-GCG 3121 U-UGA-N-CU -AA-CCC--- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CAGU-GGG UUU-AG-CG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.capsu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas capsulata. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas capsulata. ORGANISM Sphingomonas capsulata. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S56775 LMG 2830 (T) = JCM 7508 (T) = NCIMB 9890 = DSM 31096 = ATCC 14666 = IFO 12533 = DSM 30196 = CCUG 17697 biol_source= stocked distilled water BASE COUNT 70 a 62 c 81 g 55 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUU-C-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UU 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G -AG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.6 SPG.ADHAESIVA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.6 SPG.ADHAESIVA_SUBGROUP. ORGANISM 2.14.1.6.6 SPG.ADHAESIVA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1109 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1109. str. SBR1109. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1109. str. SBR1109. ORGANISM str. SBR1109. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84535|g871656 isolate_name= SBR1109 BASE COUNT 95 a 80 c 118 g 74 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-NU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2017 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2017. str. SBR2017. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2017. str. SBR2017. ORGANISM str. SBR2017. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84561|g871682 isolate_name= SBR2017 BASE COUNT 96 a 81 c 117 g 74 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------GU 541 AA-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.RB2256 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RB2256. str. RB2256. ACCESSION No information KEYWORDS No information. SOURCE str. RB2256. str. RB2256. ORGANISM str. RB2256. REFERENCE 1 AUTHORS Schut,F., Olsen,J.L., Stam,W.T. and Prins,R.A. TITLE Species-specific detection of bacteria in natural seawater populations using 16S rRNA probes: investigation and characterization of the marine ultramicrobacterium, strain RB2256 JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11041|g508702 isolate_name= RB2256 BASE COUNT 199 a 149 c 225 g 152 t 3651 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-AC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GAC-(-- --------UU 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC -GCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CA-GUG-C(- UC-A)A-CAC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGGA A-AACUU-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN9c 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN9c.. ACCESSION No information KEYWORDS No information. SOURCE clone JN9c. ORGANISM clone JN9c. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69274|g1177278 BASE COUNT 83 a 55 c 97 g 66 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGAG-C-- 1201 UA--CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 U-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GUG-C(- UC-A)--CAC -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGGC A-AACUU-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGN- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- GACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--RG-UA WUGACN-NUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CUG -GG--UC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.macgol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas macrogoltabidus. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas macrogoltabidus. ORGANISM Sphingomonas macrogoltabidus. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13723|g456229 BASE COUNT 355 a 329 c 430 g 296 t 2966 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCCC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU U--------- ------AG-- A(-GAAA-)U -NNGU-G--C UAAUACC-GN 481 AU-AAU---- ---------- ---------- ---------- ---GAC-(-- --------NN 541 CG-------- -)-GUC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -UGCC-UUUG A-AAC-UGGA A-AACUU-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-CC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AAC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UGAU-C- GCG----GAU 1981 -UAG-A--(- GAGA-)-UCU -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-CCG-G(G 2881 -CGA)GGGC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 A-UGC-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-CU-GA-CC A-CCGU-GGG UC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.adhae3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas adhaesiva. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas adhaesiva. ORGANISM Sphingomonas adhaesiva. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13722|g456228 BASE COUNT 361 a 331 c 429 g 294 t 2961 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCCC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-AAC-UGGA A-AACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCAG- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UGAU-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-CCU-C(G 2881 -CGA)GAGG- ---------- UA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GCA 3121 G-UGC-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-CU-GA-CC A-CAGU-GGG UC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spg.terrae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphingomonas terrae. ACCESSION No information KEYWORDS No information. SOURCE Sphingomonas terrae. ORGANISM Sphingomonas terrae. REFERENCE 1 AUTHORS Takeuchi,M., Kawai,F., Shimada,Y. and Yokota,A. TITLE Taxonomic study of polyethylene glycol-utilizing bacteria: emended description of the genus Sphingomonas sanguis of Sphingomonas macrogoltabidus sp. nov., Sphingomonas sanguis sp. nov. and Sphingomonas terrae sp. nov JOURNAL Syst. Appl. Microbiol. 16, 228-238 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13727|g456233 NB: nucs beyond 1453 removed; abberant sequence BASE COUNT 346 a 326 c 432 g 292 t 2980 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---G -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -AGCC-UUUG A-AAC-UGGA A-AGCUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 ACU--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UGAG-C- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UU-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- AA-CCU-C(G 2881 -CGA)GAGG- ---------- UA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-GCC 3121 C-AGA-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s24 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s24. str. s24. ACCESSION No information KEYWORDS No information. SOURCE str. s24. str. s24. ORGANISM str. s24. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69328|g1181111 isolate_name= s24 BASE COUNT 94 a 68 c 107 g 72 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 C-CC-AAG|U CAG---AGGU G-AAA-UN-N CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-AAC-UAUG U-AACUA-GA AUC-----UU G-GA-GAGGU CAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GC-UAG -GG-CCC--- ---------- 1681 -(-AC-A-)- ---------- ---------- -G-------- -------GGC -UUUGG-UGG 1741 CG--CA---- --C--(UAA- ---C)G-CA- UUAA-GUUAU C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B713 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B713. str. B713. ACCESSION No information KEYWORDS No information. SOURCE str. B713. str. B713. ORGANISM str. B713. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13142|g495584 isolate_name= B713 BASE COUNT 59 a 67 c 71 g 44 t 4135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .UA--CAAAG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-CCGUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG AUNCAG-CG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B615 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B615. str. B615. ACCESSION No information KEYWORDS No information. SOURCE str. B615. str. B615. ORGANISM str. B615. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13134|g495581 isolate_name= B615 BASE COUNT 178 a 165 c 203 g 137 t 3693 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...A-UGCC- 361 -A-CG-AA-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUU-C-GN 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----NAGG-- AUG---A-|G CCCGC----- -GU|----AG .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... ..G-GA-AA- G-G---AA-G 901 GGN-AAAGUG G-GCCAAU-- GG-GC-(GAA A)-GCC-AAU UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------GAA- ---------) ---------- 1081 ---------- ---------- U-GA-CNGU- A-CCU-G-GA G-AA--UGAG ---------C 1141 -UCCGGCU-N ACUCC-GUG( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... ....CGAAG- AACA-CCAG- 1441 -U---GC(-A AA-G)GCAA- -CUGACUG-- ---------- ---------- ---------G 1501 ACA--AG-UA CUUACG-CUC AG-G------ -------UA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CAC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -G-------- -------UGU -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... ..G--CANAG GGC-A-G-C- AA-CCU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCCG UCUCACA--- --CCA-UGGG A--GU-UGU- -U-UC-ACCC -UAA-G-GCA 3121 G-UGC---CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B712 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B712. str. B712. ACCESSION No information KEYWORDS No information. SOURCE str. B712. str. B712. ORGANISM str. B712. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13141|g495583 isolate_name= B712 BASE COUNT 55 a 69 c 78 g 46 t 4128 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .UGGC-G-GU -G---CAGUG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCCGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG AUCCAG-CG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B707 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B707. str. B707. ACCESSION No information KEYWORDS No information. SOURCE str. B707. str. B707. ORGANISM str. B707. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13139|g495582 isolate_name= B707 BASE COUNT 53 a 66 c 65 g 42 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... ..A--CAGUG GGC-A-G-C- AA-ACU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCNAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCCCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -CAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCAAGG-C-A G-CU-GA-CC A-CGGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1103 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1103. str. SBR1103. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1103. str. SBR1103. ORGANISM str. SBR1103. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84530|g871651 isolate_name= SBR1103 BASE COUNT 98 a 79 c 113 g 77 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGN-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1110 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1110. str. SBR1110. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1110. str. SBR1110. ORGANISM str. SBR1110. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84536|g871657 isolate_name= SBR1110 BASE COUNT 97 a 87 c 114 g 70 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-G-GG| -G-UGU--(G -AGA)-GCAC ----GA-C-- CCC-C|C-AC -AAGGA-C-A 841 (CUGA-GA-C ACG)--GGUC -CUA-C-ACC -(UACG)--G GUG-GC-AG- C-A---AC-U 901 GGG-AAUCUU G-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1106 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1106. str. SBR1106. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1106. str. SBR1106. ORGANISM str. SBR1106. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84533|g871654 isolate_name= SBR1106 BASE COUNT 99 a 79 c 112 g 77 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-NU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2056 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2056. str. SBR2056. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2056. str. SBR2056. ORGANISM str. SBR2056. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84591|g871712 isolate_name= SBR2056 BASE COUNT 98 a 79 c 113 g 78 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1045 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1045. str. SBR1045. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1045. str. SBR1045. ORGANISM str. SBR1045. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84488|g871609 isolate_name= SBR1045 BASE COUNT 97 a 76 c 114 g 78 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G NC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2021 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2021. str. SBR2021. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2021. str. SBR2021. ORGANISM str. SBR2021. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84564|g871685 isolate_name= SBR2021 BASE COUNT 94 a 81 c 113 g 76 t 4012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -UGC-UU--N ACNC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---C -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-NAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1018 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1018. str. SBR1018. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1018. str. SBR1018. ORGANISM str. SBR1018. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84462|g871583 isolate_name= SBR1018 BASE COUNT 96 a 80 c 114 g 77 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -GGC-UU--A ACCC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.7 ERB.LONGUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.7 ERB.LONGUS_SUBGROUP. ORGANISM 2.14.1.6.7 ERB.LONGUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppb.neust2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyrobacter neustonensis. ACCESSION No information KEYWORDS No information. SOURCE Porphyrobacter neustonensis. ORGANISM Porphyrobacter neustonensis. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A., Sly,L.I., Moore,C. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01785|g175676 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 334 a 305 c 407 g 289 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GANC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--CUU---- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CAU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-NG| -G-NCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UCA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGGNGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-- CG-GGG-C(- UC-N)--CCC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGGG A-AGCUN-GA AUC-----NU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUUC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGU -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UN-AAANCUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------U ---AGGA--- CGU----ACU 1981 -UCU-G--(- GAGA-)-CAG -A-UUUC--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -UA--CAGUG GGC-A-G-C- UA-UUC-C(G 2881 -CAA)GGAU- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UN-ACCC -GAA-G-GCA 3121 G-UNN-G-CU -NN-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppb.neusto 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyrobacter neustonensis. ACCESSION No information KEYWORDS No information. SOURCE Porphyrobacter neustonensis. ORGANISM Porphyrobacter neustonensis. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A.J., Sly,L.I., Moore,C.J. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96745 BASE COUNT 334 a 305 c 407 g 289 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GANC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--CUU---- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CAU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-NG| -G-NCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UCA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGGNGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-- CG-GGG-C(- UC-N)--CCC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGGG A-AGCUN-GA AUC-----NU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUUC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGU -UUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UN-AAANCUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------U ---AGGA--- CGU----ACU 1981 -UCU-G--(- GAGA-)-CAG -A-UUUC--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -UA--CAGUG GGC-A-G-C- UA-UUC-C(G 2881 -CAA)GGAU- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UN-ACCC -GAA-G-GCA 3121 G-UNN-G-CU -NN-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppb.tepida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyrobacter tepidarius str. OT3. ACCESSION No information KEYWORDS No information. SOURCE Porphyrobacter tepidarius str. OT3. ORGANISM Porphyrobacter tepidarius. REFERENCE 1 AUTHORS Hanada,S., Kawase,Y., Hiraishi,A., Takaichi,S., Matsuura,K., Shimada,K. and Nagashima,K.V. TITLE Porphyrobacter tepidarius sp. nov., a moderately thermophilic aerobic photosynthetic bacterium isolated from a hot spring JOURNAL Int. J. Syst. Bacteriol. 47 (2), 408-413 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84429|g2116729 isolate_name= OT3 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 361 a 335 c 424 g 306 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--A------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-NCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGNG- A-A--CCU-G C-CCUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-AC-AN- C-A---GU-G 901 GGG-AAUANU G-GACAAU-- GG-GC-(GAA A)-NCC-UGA UCCA|-ACAA U-CC-GC-GU 961 G-A-GU-G-A U-GAA--G-C CC(--UU-AG --)GG-UUUU AAA--GCUC| UUUU-AC-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UNCC-CUUG A-AAC-UGGA G-AGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-U------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- -G-------- -------AAC -UUGGG-UGG 1741 CN--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(N CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----ACU 1981 -UCU-G--(- GAGA-)-CAG -A-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-N-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UC -UA--CAGUG GGC-A-G-C- UA-UUC-C(G 2881 -CAA)GGAU- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UNCAAC-U- C)-GAGGGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGC-UC UUGUA----C 3061 ACACCGUCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-UC-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-GGG UUC-AG-NG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGNC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erm.ramosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythromicrobium ramosum str. E5 Yurkov strain Drews DSM 8510 (T). ACCESSION No information KEYWORDS No information. SOURCE Erythromicrobium ramosum str. E5 Yurkov strain Drews DSM 8510 (T). ORGANISM Erythromicrobium ramosum. REFERENCE 1 AUTHORS Yurkov,V., Stackebrandt,E., Holmes,A., Fuerst,J.A., Hugenholtz,P., Golecki,J., Gad'on,N., Gorlenko,V.M., Kompantseva,E.I. and Drews,G. TITLE Phylogenetic positions of novel aerobic, bacteriochlorophyll alpha-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 427-434 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8510 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72909 isolate_name= E5 Yurkov strain Drews BASE COUNT 284 a 243 c 344 g 237 t 3268 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UUC---- ---------- ---------- 241 --------GG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -UACU-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGGA A-AGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -C-------- -------AGC -UUGGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--NGNAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----ACU 1981 -UCU-G--(- GAGA-)-CAG -A-UUUC--- UU-------- ---UN----- --(CN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NN N-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ppb.sp2721 4376 bp RNA RNA 02-JUL-1998 DEFINITION Porphyrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Porphyrobacter sp. ORGANISM Porphyrobacter sp. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A., Sly,L.I., Moore,C. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01783 BASE COUNT 306 a 292 c 382 g 279 t 3117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UUC---- ---------- ---------- 241 --------GG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACU...... 841 (......... ...)...... .......... .(UNCG)--G GAG-GC-NG- C-N---GU-G 901 GGN-NAUNUU G-GACNAU-- GG-GN-(GAA A)-GCC-UNA UCCA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU NAA--GCUC| UUUU-NC-CC 1021 --GA-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-UCN-G-GA C-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-- CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGGG A-AGCUA-GA AUC-----UU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-CAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAN- 1441 -U-N-NC(-G AA-G)GCGA- -CUCNCUG-- ---------- ---------- ---------G 1501 ACA--AG-NA UUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG-UUC--- ---------- 1681 -(-AU-G-)- ---------- ---------- GA-------- -------ACC -CUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-G---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----ACU 1981 -UCU-G--(- GAGA-)-CAG -A-UUUC--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-CU CNU-G-GC-C CUUAC-N-GG -CU--GGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGC-A-UC -UA--CNGUG GGC-A-G-C- UA-UUC-C(G 2881 -CAA)GGAU- ---------- GC-GCUAA-U CUCC--AAAA -GA-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.litorl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter litoralis str. T4(31-1187) DSM 8509 (T). ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter litoralis str. T4(31-1187) DSM 8509 (T). ORGANISM Erythrobacter litoralis. REFERENCE 1 AUTHORS Yurkov,V., Stackebrandt,E., Holmes,A., Fuerst,J.A., Hugenholtz,P., Golecki,J., Gad'on,N., Gorlenko,V.M., Kompantseva,E.I. and Drews,G. TITLE Phylogenetic positions of novel aerobic, bacteriochlorophyll alpha-containing bacteria and description of Roseococcus thiosulfatophilus gen. nov., sp. nov., Erythromicrobium ramosum gen. nov., sp. nov., and Erythrobacter litoralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 427-434 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8509 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72962 Former RDP Sids: env.T4 legacy_attribute= Drews, marine, North Sea, contains Bchla isolate_name= T4(31-1187) BASE COUNT 277 a 248 c 348 g 236 t 3267 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-G-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGGA U-GGCUA-GA AUC-----CU G-GA-GAGGC GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG--CUC-- ---------- 1681 -(-AU-A-)- ---------- ---------- GA-------- -------GCN -NN-GG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C N)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----GUU 1981 -UCU-G--(- GAGA-)-CAG -A-CUCCU-- NC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GUGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU C......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.longu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter longus str. OCh 101 ATCC 33941. ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter longus str. OCh 101 ATCC 33941. ORGANISM Erythrobacter longus. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33941 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55493|g174509 ATCC 33941 = IFO 14126 (T) isolate_name= OCh 101 BASE COUNT 68 a 58 c 75 g 60 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GGCU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.longu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter longus str. OCh 101. ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter longus str. OCh 101. ORGANISM Erythrobacter longus. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A.J., Sly,L.I., Moore,C.J. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96744 isolate_name= OCh 101 NB: only difference between this and Erb.longu4 is at beginning of molecule BASE COUNT 359 a 324 c 421 g 305 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-CC-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UAGG U-AACUA-GA AUA-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG--CUC-- ---------- 1681 -(-AU-A-)- ---------- ---------- GA-------- -------GCC -CUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-UGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----GU- 1981 -UCU-G--(- GAGA-)-CAG -A-CUCCU-- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AU-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAGUG AGC---G-C- GA-UCC-C(G 2881 -CAA)GGGU- ---------- CA-GCUAA-- CUCC--AAAA -GA-UAAUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-NUA 3121 G-UGC-G-CU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CU-AG-CC A-CGGU-GGG AUC-AG-CG- ACU-GGGG-U 3301 N---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.longu4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter longus str. OCh 101. ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter longus str. OCh 101. ORGANISM Erythrobacter longus. REFERENCE 1 AUTHORS Fuerst,J.A., Hawkins,J.A., Holmes,A., Sly,L.I., Moore,C. and Stackebrandt,E. TITLE Porphyrobacter neustonensis gen. nov., sp. nov., an aerobic bacteriochlorophyll-synthesizing budding bacterium from freshwater JOURNAL Int. J. Syst. Bacteriol. 43, 125-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01786 isolate_name= OCh 101 NB: only difference between this and Erb.longu3 is at beginning of molecule BASE COUNT 356 a 321 c 419 g 304 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-CC-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UAGG U-AACUA-GA AUA-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GG--CUC-- ---------- 1681 -(-AU-A-)- ---------- ---------- GA-------- -------GCC -CUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-UGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----GU- 1981 -UCU-G--(- GAGA-)-CAG -A-CUCCU-- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AU-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAGUG AGC---G-C- GA-UCC-C(G 2881 -CAA)GGGU- ---------- CA-GCUAA-- CUCC--AAAA -GA-UAAUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-NUA 3121 G-UGC-G-CU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CU-AG-CC A-CGGU-GGG AUC-AG-CG- ACU-GGGG-U 3301 N---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.longu5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter longus. ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter longus. ORGANISM Erythrobacter longus. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Kuraishi,H. and Yamasato,K. TITLE Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the proteobacteria alpha group JOURNAL J. Gen. Appl. Microbiol. 38, 541-551 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12699|g493640 BASE COUNT 340 a 288 c 388 g 286 t 3074 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------C (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GGCC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-CC-AAG|U CAG---GGGU G-AAA-UN-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UAGG U-AACUA-GA AUA-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAN(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCN -NN-NUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGC -CUGGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-AGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-AGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----GUU 1981 -UCU-G--(- GAGA-)-CAG -A-CUCCU-- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-A |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAGUG AGC-A-N-N- GA-UCC-C(G 2881 -CAA)GGGU- ---------- CA-GCUAA-U CUCC--AAAA -GA-U-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Erb.longus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erythrobacter longus str. OCh 101 ATCC 33941. ACCESSION No information KEYWORDS No information. SOURCE Erythrobacter longus str. OCh 101 ATCC 33941. ORGANISM Erythrobacter longus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33941 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59062 ATCC 33941 = IFO 14126 (T) isolate_name= OCh 101 BASE COUNT 368 a 334 c 428 g 318 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGG- A-A--CCU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- A(-GAAA-)U -UUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----UA G--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-UA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-A-GA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-CC-AAG|U CAG---GGGU G-ANA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-AAC-UAGG U-AACUA-GA AUA-----CU G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GU-UA UUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CU-GU-CCG -GN-CUC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------AGC -CUGGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUAU C|C|G-CCU- G-AGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UC|--- ---------C ---UAGG--- ACG----GUU 1981 -UCU-G--(- GAGA-)-CAG -A-CUCCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UC -UA--CAGUG AGC-A-G-C- GA-UCC-C(G 2881 -CAA)GGGU- ---------- CA-GCUAA-U CUCC--AAAA -GA-U-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-ACCC -GAA-G-AUA 3121 G-UGC-G-CU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CU-AG-CC A-CGGU-GGG AUC-AG-CG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUU|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.6.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.6.8 SBR2075_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.6.8 SBR2075_ISOLATE. ORGANISM 2.14.1.6.8 SBR2075_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2075 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2075. str. SBR2075. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2075. str. SBR2075. ORGANISM str. SBR2075. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84606|g871727 isolate_name= SBR2075 BASE COUNT 95 a 82 c 120 g 67 t 4012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--GC----- ---------- ---------- 241 --------AA -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- A-A--CCU-G C-CUUU---G -GGUA-C-GG 421 -AAC-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGG-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----GAAG-- AGG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C GCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.7 R.SALEXIGENS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.7 R.SALEXIGENS_GROUP. ORGANISM 2.14.1.7 R.SALEXIGENS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.salexig2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum salexigens. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum salexigens. ORGANISM Rhodospirillum salexigens. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14431|g633098 ATCC 35888 (T) = DSM 2132 BASE COUNT 307 a 314 c 433 g 264 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-G C-UCAG---G -GCUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGCA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ----AAU--- ---)------ ---------| -----U--C- G--GCC---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UC- 1261 G-GU-CAG|U UGG---GGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-CUCA A-AAC-UACC G-AUCUA-GA GUU-----CG G-GA-GAGGU AAG-C|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -AU-GU-CGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGU -UUCGG-UGU 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---CGGG--- UCG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUUU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CCC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGC-A-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-A..... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS R.salexige 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodospirillum salexigens. ACCESSION No information KEYWORDS No information. SOURCE Rhodospirillum salexigens. ORGANISM Rhodospirillum salexigens. REFERENCE 1 AUTHORS Mack,E.E., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Rhodospirillum sodomense, sp. nov., a Dead Sea Rhodospirillum species JOURNAL Arch. Microbiol. 160, 363-371 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59070 ATCC 35888 (T) = DSM 2132 BASE COUNT 342 a 343 c 472 g 284 t 2935 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----NN-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-G C-UCAG---G -GCUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGCA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCG-(-- ---------U 541 AU-------- -)-UGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ----AAU--- ---)------ ---------| -----U--C- G--GCC---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGGG-C-- 1201 NAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UC- 1261 G-GU-CAG|U UGG---GGGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-CUCA A-AAC-UACC G-AUCNA-GA GUU-----CG G-GA-GAGGU AAG-C|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -AU-GU-CGG -GG-CUC--- ---------- 1681 -(-UU-A-)- ---------- ---------- -G-------- -------AGU -UUCGG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCN- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---CGGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUUU-- UC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CCC-GG-NGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GG-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGC-A-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCU--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCC -GAA-G-ACG 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-NC-GG-CC A-CGGU-CAG GUC-AG-CG- ACU-GGGG-U 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4a.. ACCESSION No information KEYWORDS No information. SOURCE clone 4a. ORGANISM clone 4a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89302 BASE COUNT 64 a 53 c 76 g 45 t 4138 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....C----- -GA|----CC U--AUUA-G- CUA-G---AU 721 GG-UG-UG-( GU-AAC-GG) -C-ACACC-A U|-GGC-AA- CGA------- -----UA-GG 781 U-AG-G-GG| -C-CNU--(G -AGA)-GGGG ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU A-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UUUC-GC-CU 1021 --GU-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCA-G-GU A-AA--GAAA .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.8 CAULOBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.8 CAULOBACTER_GROUP. ORGANISM 2.14.1.8 CAULOBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.8.1 ENV.SMK410_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.8.1 ENV.SMK410_SUBGROUP. ORGANISM 2.14.1.8.1 ENV.SMK410_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK410 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK410.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK410. ORGANISM clone SMK410. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78648|g509488 BASE COUNT 62 a 63 c 81 g 54 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-CGC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUN-NNNG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GGUA-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GU 481 AU-GUG---- ---------- -------C-C -C-C--C-AU ---UCU-(-- --------UA 541 GC-------- -)-GGG---A UG-GG----U GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK141 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK141.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK141. ORGANISM clone SMK141. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78632|g509474 BASE COUNT 92 a 87 c 117 g 77 t 4003 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .GGC-NU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCN-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---U -GGUA-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UC 541 UU-C------ -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----UG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA -)-GCC-UGA CNCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA---UUC| UUUC-AC-CG 1021 --GG-NAC-- AU-------- ---------( ------AUA. ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.8.2 BR.DIMINUTA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.8.2 BR.DIMINUTA_SUBGROUP. ORGANISM 2.14.1.8.2 BR.DIMINUTA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON26 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON26.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON26. ORGANISM clone pCON26. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27847|g903918 BASE COUNT 96 a 100 c 134 g 87 t 3959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .........G |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUU-GA GUA-----UG A-GA-GAGGG UAU..|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ......A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAG-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.picL 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone L.. ACCESSION No information KEYWORDS No information. SOURCE clone L. ORGANISM clone L. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27858|g903929 BASE COUNT 91 a 104 c 130 g 91 t 3960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 ........CA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-ACCGC AA-------- CGAG-C--GC AAGCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CNG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON12.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON12. ORGANISM clone pCON12. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27843|g903914 BASE COUNT 114 a 110 c 147 g 100 t 3905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUU-GA GUA-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGGU-A UU-CGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGA- -CAUACCUG. .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .........U CAU-G-GS-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Br.diminut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevundimonas diminuta.. ACCESSION No information KEYWORDS No information. SOURCE Brevundimonas diminuta. ORGANISM Brevundimonas diminuta. REFERENCE 1 AUTHORS ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87274|g1165002 BASE COUNT 347 a 344 c 463 g 300 t 2922 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUU-GA GUA-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GC-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAG -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -CAC-G--(- GAGA-)-CGU -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Br.diminu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevundimonas diminuta. ACCESSION No information KEYWORDS No information. SOURCE Brevundimonas diminuta. ORGANISM Brevundimonas diminuta. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59064 Former RDP Sids: Ps.diminut ATCC 11568 (T) = LMG 2089 = LMG 1793 = CCUG 1427 = CCEB 513 biol_source= fresh water NB: Segers et al., Int. J. Syst. Bacteriol. 44, 499-510 (1994) renamed Ps.diminut as Brevundimonas diminuta former name Pseudomonas diminuta BASE COUNT 343 a 337 c 449 g 292 t 2955 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GR-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUU-GA GUA-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GC-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAG -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----NGC 1981 -CAC-G--(- GAGA-)-CGU -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-U-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-NCG 3121 G-UNC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myp.bullat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplana bullata. ACCESSION No information KEYWORDS No information. SOURCE Mycoplana bullata. ORGANISM Mycoplana bullata. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12785 BASE COUNT 342 a 329 c 447 g 292 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-N-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUU-GA GUG-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-NN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GC-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAG -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -CAG-A--(- GAGA-)-UCU -G-GCUU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CUA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 A-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.spTS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. TS1. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. TS1. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Fenton,C.D. TITLE The isolation and characterisation of Caulobacter from Manawatu water systems JOURNAL Thesis (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41814|g784867 isolate_name= TS1 BASE COUNT 57 a 56 c 86 g 50 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... G)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.CDFo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. CDFo. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. CDFo. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Fenton,C.D. TITLE The isolation and characterisation of Caulobacter from Manawatu water systems JOURNAL Thesis (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41812|g784865 isolate_name= CDFo BASE COUNT 60 a 54 c 84 g 51 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... G)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---U -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.CDF35 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. CDF35. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. CDF35. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Fenton,C.D. TITLE The isolation and characterisation of Caulobacter from Manawatu water systems JOURNAL Thesis (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41810|g784863 isolate_name= CDF35 BASE COUNT 60 a 54 c 81 g 54 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- U--CCU---- 661 ----UUAG-- AGG---C-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAU-GG) -A-CUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.MCS24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MCS24. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MCS24. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83810 isolate_name= MCS24 BASE COUNT 317 a 292 c 405 g 272 t 3090 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---NCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAU-GG) -A-CUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUU-GA GUG-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GC-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAG -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCRAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AU----CGC 1981 -CAC-G--(- GAGA-)-CGU -G-GNU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- -----A---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 N-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AN)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.MCS17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MCS17. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MCS17. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83808 isolate_name= MCS17 BASE COUNT 323 a 312 c 413 g 281 t 3047 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAU-GG) -A-CUACC-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UANG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-NGA CGCA|-GCNN UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--NU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- RA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-NA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GU.( .......... .........) .......... |......... 1201 .......UGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- NCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUU-GA GUG-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GC-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAG -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC NCC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AU----CGC 1981 -CAC-G--(- GAGA-)-CGU -N-GNNU--- GC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GR---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCCA--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACNGCCC- GUC-ACA--- --CCA-NNGG A--GU-UNG- UU-CU-ACCC -NAA-G-GCG 3121 A-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -NNNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANN-C-N N-UC-GA-CC A-CGGU-AGG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.8.3 CAU.BACTEROIDES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.8.3 CAU.BACTEROIDES_SUBGROUP. ORGANISM 2.14.1.8.3 CAU.BACTEROIDES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC14. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC14. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83800 isolate_name= FWC14 BASE COUNT 334 a 323 c 435 g 291 t 2993 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---A -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGA U-GUCUU-GA GUG-----UG A-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -UU-GU-CGG -GA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -UUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GNNU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GC-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGU------- --------(- 2881 ----)----- ---------- -----UAA-U CCUU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GAGGGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCN-GGG-CN UUGUA----C 3061 ACNNCNCCC- GUC-ACA--- --CCA-UGGG A--GU-UNG- UU-CU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -GA-CCN--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-GC-GA-CC A-CGGU-AGG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC38. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC38. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83805 isolate_name= FWC38 BASE COUNT 282 a 292 c 409 g 263 t 3130 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---NCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-N ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UNAA-GGGC- GCG-UAG-GC -G|-GA-CA- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC U-NUCUU-GA GUN-----CG G-AA-GAGGU GUG-U|GGAA 1381 CU-CCGAGU- NNN-GAG(-G UGAAA)-UUC -GU-NGAU-N UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CN---- --GC-(UNA- ---C)G-CN- UUNA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CNA)---G-A UU-NAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCNGA 1921 A-CCUUN-CC NCC-UU-UUG ANN-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -UGC-A--(- GAGA-)-UGN -N-GUU---- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----GA---| CCN-GG-ANN |---N|N--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-NC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CC-G-CCG --GU(-GG-U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-NGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAN-N-GG -GN--GGGC- 2821 U-ACR-CR-C GUG--CNNCN AUGGC-G-AC -NN--NNGAG GGC-U-G-C- AA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CCCU--NAAA -GU-N-GUC- UCNGUUCGGA 2941 U-UGUUCUC- (UGCNAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUN-AUC 3001 GC-GGA-(UC -NGC-NN)-G CCG-CGGUN- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK1.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK1. ORGANISM clone SMK1. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78629|g509471 BASE COUNT 56 a 51 c 67 g 46 t 4156 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........G- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGN-- C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AU-GG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK142 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK142.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK142. ORGANISM clone SMK142. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78633|g509475 BASE COUNT 90 a 78 c 117 g 72 t 4019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 ........CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- ---------U 541 C--------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACA)G-GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGN N-CA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.bacter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter bacteroides str. CB7. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter bacteroides str. CB7. ORGANISM Caulobacter bacteroides. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83796 isolate_name= CB7 BASE COUNT 340 a 333 c 437 g 291 t 2975 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCN A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- A-A--CGU-G C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GA 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCNGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UN- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-RAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 G-UU-CAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC U-NUCUU-GA GUU-----UG G-GA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -UGC-A--(- GAGA-)-UGC -A-GNNU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CU--GUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-AG-G A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CNGAG GGC-U-G-C- AA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CCCA--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GNN-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCN -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-NA-CC A-CGGU-AGG GUU-U..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.8.4 CAU.CRESCENTUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.8.4 CAU.CRESCENTUS_SUBGROUP. ORGANISM 2.14.1.8.4 CAU.CRESCENTUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.spMR1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. MR1. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. MR1. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Fenton,C.D. TITLE The isolation and characterisation of Caulobacter from Manawatu water systems JOURNAL Thesis (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41813|g784866 isolate_name= MR1 BASE COUNT 62 a 56 c 81 g 50 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----AC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC2. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC2. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83803 isolate_name= FWC2 BASE COUNT 328 a 325 c 435 g 283 t 3005 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUAG-- AGC---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-UN- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GUCUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CCGG--- -AC----CAC 1981 -CAG-A--(- GAGA-)-UCU -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-NAU-CG-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-NG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UNN-N(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--NAAA -GU-C-GUC- UCNGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN NNNNN----C 3061 NNNCNGCCC- GUN-NNN--- --CNN-NGGG A--GU-UNG- CU-UU-NCCC -GAG-A-GCG 3121 C-UGC-G-CU -NA-CUC--- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC18. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC18. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83802 isolate_name= FWC18 BASE COUNT 318 a 298 c 416 g 272 t 3072 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---NNC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-NG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C RCG)--GCCM -NAA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GUNUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GUU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- -----A---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CG-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UCN-N(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC17. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC17. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83801 isolate_name= FWC17 BASE COUNT 320 a 298 c 415 g 272 t 3071 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-NC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---NNC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GUNUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CCGG--- -AC----CAC 1981 -CAG-A--(- GAGA-)-UCU -G-GNU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- -----A---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CG-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-NG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UCN-N(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.CDF20a 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. CDF20a. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. CDF20a. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Fenton,C.D. TITLE The isolation and characterisation of Caulobacter from Manawatu water systems JOURNAL Thesis (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41811|g784864 isolate_name= CDF20a BASE COUNT 59 a 56 c 85 g 49 t 4127 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GU-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.FWC26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter sp. str. FWC26. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter sp. str. FWC26. ORGANISM Caulobacter sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83804 isolate_name= FWC26 BASE COUNT 324 a 312 c 423 g 287 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UNUG A-UAC-UGGC A-GUNUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUN-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AN CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAUNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUNG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-NAU-CG-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-G-AC -UA--CAGAG GGC-U-N-C- AA-UCN-N(G 2881 -NGA)GGGG- ---------- GA-GCCAA-U CCCU--NAAA -GU-N-GUC- UCNGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCN-NGG-CU UUGUA----C 3061 ACRNCGCNC- NUN-ACA--- --CNN-UGGG A--GU-UNN- CU-UU-GCNG -GAA-G-GC. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cresc7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus.. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Amemiya,K., Bellofatto,V., Shapiro,L. and Feingold,J. TITLE Transcription initiation in Vitro and in Vivo at a highly conserved promoter within a 16S ribosomal RNA gene JOURNAL J. Mol. Biol. 187, 1-14 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X03428 BASE COUNT 81 a 96 c 109 g 72 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ...G-GGG-A UA-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAG-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-C-G- AA--CC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-G-CUC- UCAGUUCGGA 2941 U-UGCUCUC- (UGC-AC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGGA CU-UU-ACCC -GA----GCG 3121 C-UAGCUCCU -AA-CCU--- ---------- ---------- -----(---- -GCUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG-CUA G-GCUGAUUC U--GGU-AGG GCC-GACUG- ACUGGGGU-U 3301 G---AAG-C- GUAA-CAAGG UAACC-G-AG G(GGA-A)CC -GCGGU--UG GA-CACCUC- 3361 UUC.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cresc8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB13. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB13. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Feingold,J., Bellofatto,V., Shapiro,L. and Amemiya,K. TITLE Organization and nucleotide sequence analysis of an rRNA and tRNA gene cluster from Caulobacter crescentus JOURNAL J. Bacteriol. 163, 155-166 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L00194|g144275 (bases 1 to 358) isolate_name= CB13 BASE COUNT 142 a 156 c 190 g 125 t 3763 others ORIGIN 1 .......... .......... .......... ...CAACCUG AGAGUU(U-G A)U-CCU|AG 61 CCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-AA-CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUG--- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UGGAG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGG------- -----UC... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ...G-GGG-A UA-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAG-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA--CC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGCUCUC- (UGC-AC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGGA CU-UU-ACCC -GA----GCG 3121 C-UAGCUCCU -AA-CCU--- ---------- ---------- -----(---- -GCUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG-CUA G-GCUGAUUC U--GGU-AGG GCC-GACUG- ACUGGGGU-U 3301 G---AAG-C- GUAA-CAAGG UAACC-G-AG G(GGA-A)CC -GCGGU--UG GA-CACCUC- 3361 UUCU|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myp.segnis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplana segnis. ACCESSION No information KEYWORDS No information. SOURCE Mycoplana segnis. ORGANISM Mycoplana segnis. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (2), 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13947|g870815 BASE COUNT 337 a 335 c 441 g 282 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGNA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GUCUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- NUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CCGG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CG-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UCC-C(G 2881 -CGA)GGGN- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGNU-AGG NUC-AG-CG- ACUG...... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cres4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB2A. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB2A. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83799 isolate_name= CB2A BASE COUNT 340 a 335 c 442 g 291 t 2968 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GUCUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CGGUGG-AGC R-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GNUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--AUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CA-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UCN-N(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACNNCCC- GUC-ACA--- --CCA-UGGG A--GU-UNG- CU-UU-ACCC NNAA-G-GCG 3121 C-UGC-G-CU -AA-CCN--- ---------- ---------- -----(---- -NCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG-C-A N-GC-GA-CC A-CUGGUAGG GUC-A--C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cres3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB15A. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB15A. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Flesher,B. and Smit,J. TITLE The phylogeny of marine and freshwater caulobacters reflects their habitat JOURNAL J. Bacteriol. 174, 2193-2198 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M83798 isolate_name= CB15A BASE COUNT 318 a 289 c 409 g 266 t 3094 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------N-NN (--NU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU N--------- ------NG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-GUG---- ---------- ---------- ---------- ---NNC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UUUC-AC-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGGC A-GNNUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-R--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGCAGA 1921 A-CCUUA-CC MCC-UU-UUG ACA-UG|--- ---------C ---CUGG--- -AC----CGC 1981 -NAC-A--(- GAGA-)-UGU -N-NNNN--- N--------- ---M------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CUG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--AUU- 2281 AG--UUGC-C AU-NNN---- ---------- ---------- ---N(---NU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CA-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-AG -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGC-U-G-C- AA-UCN-N(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCU--AAAA -GU-C-GUC- UCNGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cres2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB2. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB2. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52281 isolate_name= CB2 BASE COUNT 305 a 283 c 406 g 257 t 3125 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACCUG AGAGUG(U-G A)U-NCU|-G 61 GCUCAG-AGC -GAAC-GC-- UNGC-GGC-A -GGC-CU--N ACAC-ANGCA A-GUGCGAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------N-CU (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- -----CAG-- G(-GAAA-)C -UNGA-G--C UNANACC-GG 481 AN-GGU---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-NG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGN-NAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-NNA CGCA|-GCCA UGCN-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--AUUC| UGUC-NN-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- N-CCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUN-N-- 1201 NAN-NGUUGC UC-GGAAUUA -CU-GGGC|G UANA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-UAG|U CAG---AGGU G-AAA-GC-C CA-GNG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCC-UNUG A-UAC-UGGC A-GUCUU-GA GUA-----CG G-AA-GAGGU AUG-U|GGAN 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUACUG-- ---------- ---------- ---------G 1501 UCC--GU-UA CUGACG-CUG AG-G------ -------CU- N-NAAA-GG- CU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGA 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--N 1861 C-A--CA-AG CGGUGG-AGC A-N-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC ACC-UC-UUG ACA-UA|G-- ---------C ---CUGG--- -AC----CGC 1981 -CAC-A--(- GAGA-)-UNU -G-GNUU--- UU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| NCG-GG-ACA |---C|A--G 2161 GU-GN-CNNA GG|A-CNN-- NNG-NAN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--AGG- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---AA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAU-CA-U A-CU-G-CCG --GA(-GU-U AA)-UCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-N-AG -GU--GGGC- 2821 U-ACN-CN-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGN-U-N-C- AA-UCN-G(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCUN--AAAG -GU-C-GUC- UCNGUUCGGA 2941 U-UGUUCUC- (UGCNNC-U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUN- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9 RHIZOBIUM-AGROBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9 RHIZOBIUM-AGROBACTERIUM_GROUP. ORGANISM 2.14.1.9 RHIZOBIUM-AGROBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.1 BRADYRHIZOBIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.1 BRADYRHIZOBIUM_SUBGROUP. ORGANISM 2.14.1.9.1 BRADYRHIZOBIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Afp.felis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Afipia felis.. ACCESSION No information KEYWORDS No information. SOURCE Afipia felis. ORGANISM Afipia felis. REFERENCE 1 AUTHORS O'Connor,S.P., Dorsch,M., Steigerwalt,A.G., Brenner,D.J. and Stackebrandt,E. TITLE 16S RNA sequences of Bartonella bacilliformis and cat scratch disease bacillus reveal phylogenetic relationships with the alpha-2 subgroup of the class Proteobacteria JOURNAL J. Clin. Microbiol. 29, 2144-2150 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65248 NB: seq from ATCC 53690? BASE COUNT 352 a 337 c 441 g 290 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUCCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GA 481 AU-AAG---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-GG----- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUC-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA---G-C- AA-AGG-C(G 2881 -CGA)GCCC- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGACUC- (UGCAAC-U- C)-GAGUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A A-NC-GG-CC A-CGCU-AGG GUC-A..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Afp.cleve 4376 bp RNA RNA 02-JUL-1998 DEFINITION Afipia clevelandensis.. ACCESSION No information KEYWORDS No information. SOURCE Afipia clevelandensis. ORGANISM Afipia clevelandensis. REFERENCE 1 AUTHORS O'Connor,S.P., Dorsch,M., Steigerwalt,A.G., Brenner,D.J. and Stackebrandt,E. TITLE 16S RNA sequences of Bartonella bacilliformis and cat scratch disease bacillus reveal phylogenetic relationships with the alpha-2 subgroup of the class Proteobacteria JOURNAL J. Clin. Microbiol. 29, 2144-2150 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M69186 BASE COUNT 352 a 336 c 442 g 290 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUCCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-GG----- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCU -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -AA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA---G-C- AA-AGG-G(G 2881 -CGA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A A-NC-GG-CC A-CGGU-AGG GUC-A..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK196 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK196.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK196. ORGANISM clone SMK196. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78635|g509461 BASE COUNT 65 a 54 c 74 g 47 t 4136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ..UG-GCAG- 361 -A-CG-GG-U GAGU---AA- -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-NGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- N--CCG---- 661 ----AAAG-- AUC-----|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACN)--G NAG-GC-AG- C-A---GU-G 901 GGA....... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.sp5383 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter sp. ORGANISM Nitrobacter sp. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35514|g530892 BASE COUNT 116 a 99 c 142 g 87 t 3932 others ORIGIN 1 .......... .......... .......... ....CACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CNN-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UA| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--NN-AG --)GG-UUGU AAA--GCUN| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.sp5384 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter sp. ORGANISM Nitrobacter sp. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35513|g530894 BASE COUNT 115 a 99 c 142 g 88 t 3932 others ORIGIN 1 .......... .......... .......... ....CACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CNN-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--NN-AG --)GG-UUGU AAA--GCUN| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65572|g556796 BASE COUNT 61 a 57 c 76 g 45 t 4137 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGCG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUAU---C -AGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AUAG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.winog2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter winogradskyi. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter winogradskyi. ORGANISM Nitrobacter winogradskyi. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35506|g530891 BASE COUNT 351 a 344 c 449 g 289 t 2943 others ORIGIN 1 .......... .......... .......... ......CUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUN AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -CGA)CCCC- ---------- UA-GCAAA-U CUCAA-AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-C- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.winog3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter winogradskyi. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter winogradskyi. ORGANISM Nitrobacter winogradskyi. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35507|g530896 BASE COUNT 325 a 318 c 409 g 272 t 3052 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ....G----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UN (--NC----- ---------- ---------- 241 --------NA -)UN-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-NA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-N AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -N-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -CGA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-C- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.spR6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter sp. str. R6. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter sp. str. R6. ORGANISM Nitrobacter sp. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl ,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35511|g530895 isolate_name= R6 BASE COUNT 341 a 331 c 434 g 281 t 2989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UN (--NN----- ---------- ---------- 241 --------NA -)UA-NN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -UGA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-C- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-N-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.winogr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter winogradskyi str. W. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter winogradskyi str. W. ORGANISM Nitrobacter winogradskyi. REFERENCE 1 AUTHORS Orso,S., Gouy,M., Navarro,E. and Normand,P. TITLE Molecular phylogenetic analysis of Nitrobacter spp JOURNAL Int. J. Syst. Bacteriol. 44, 83-86 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11661 isolate_name= W BASE COUNT 358 a 347 c 460 g 293 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCC- -AAA-C-UC- -(UACG)--- --G-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A-GCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -UGA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-C- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.spLL 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter sp. str. LL. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter sp. str. LL. ORGANISM Nitrobacter sp. REFERENCE 1 AUTHORS Orso,S., Gouy,M., Navarro,E. and Normand,P. TITLE Molecular phylogenetic analysis of Nitrobacter spp JOURNAL Int. J. Syst. Bacteriol. 44, 83-86 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11662 isolate_name= LL BASE COUNT 362 a 350 c 458 g 292 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-NG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GN-C- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -CAA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-C- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.hambur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter hamburgensis str. X14. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter hamburgensis str. X14. ORGANISM Nitrobacter hamburgensis. REFERENCE 1 AUTHORS Orso,S., Gouy,M., Navarro,E. and Normand,P. TITLE Molecular phylogenetic analysis of Nitrobacter spp JOURNAL Int. J. Syst. Bacteriol. 44, 83-86 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11663 isolate_name= X14 BASE COUNT 363 a 347 c 458 g 294 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC- -(UACG)--- G-G-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-GUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -CAA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.hambu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter hamburgensis str. Nb14? or X14 (T). ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter hamburgensis str. Nb14? or X14 (T). ORGANISM Nitrobacter hamburgensis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35502|g530890 isolate_name= Nb14? or X14 (T) BASE COUNT 351 a 336 c 438 g 283 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-GUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAUG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- AA-AGG-G(G 2881 -CAA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCN 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.WCUG13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. WCU-G13. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. WCU-G13. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Eleuterio,M. and Favinger,J. TITLE Longevity of photosynthetic bacteria isolated from deep subsurface sediments JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05772|g456278 isolate_name= WCU-G13 BASE COUNT 74 a 58 c 80 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ntb.sp5385 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Nitrobacter sp. ORGANISM Nitrobacter sp. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35512|g530893 BASE COUNT 116 a 99 c 143 g 86 t 3932 others ORIGIN 1 .......... .......... .......... .....ACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 Y-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--NN-AG --)GG-UUGU AAA--GCUN| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65574|g556801 BASE COUNT 61 a 54 c 74 g 49 t 4138 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON11 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON11.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON11. ORGANISM clone pCON11. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27817|g903912 BASE COUNT 130 a 123 c 167 g 106 t 3850 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......AAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCARG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G U......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .........S CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- AA-AGG-G(S 2881 -CGA)CCUC- ---------- UA-GCAAA-U CUCA-AAAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC N-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP850 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP850.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP850. ORGANISM clone JAP850. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09829|g495562 amplification_primer= 3': PCR primer 1392R amplification_primer= 5': PCR primer 27F geog_source= Japan Sea biol_source= sediment (503 mbsf) BASE COUNT 326 a 311 c 404 g 264 t 3071 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....A-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--------- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUCU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CCG---- 661 ----AGAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CC--UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GA--- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-CA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACCUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GAUG-C-- 1201 UAU-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUA-----UG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UCG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACAAG-UGG 1741 CG--CA---- --G--(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGC 1981 -ACC-A--(- GAGA-)-UGG -A-GCCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--UUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCC- ---------- UC-GCCAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Orso,S., Gouy,M., Navarro,E. and Normand,P. TITLE Molecular phylogenetic analysis of Nitrobacter spp JOURNAL Int. J. Syst. Bacteriol. 44, 83-86 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17001 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11664 ATCC 17001 (T) = NCIMB 11692 = NCIMB 8288 = NCIMB 8252 = ATCC 11168 = DSM 123 isolate_name= ATH 2.1.6 NB: Rps.palus2 & Rps.palus3 both released due to many differences BASE COUNT 363 a 345 c 461 g 295 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CUU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC--UGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UGC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUA-----UG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCU -GAA-G-GCA 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y., Kuraishi,H. and Yamasato,K. TITLE Rhodocista centenaria gen. nov., sp. nov., a cyst-forming anoxygenic photosynthetic bacterium and its phylogenetic position in the proteobacteria alpha group JOURNAL J. Gen. Appl. Microbiol. 38, 541-551 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17001 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12700|g493696 ATCC 17001 (T) = NCIMB 11692 = NCIMB 8288 = NCIMB 8252 = ATCC 11168 = DSM 123 isolate_name= ATH 2.1.6 BASE COUNT 327 a 300 c 408 g 270 t 3071 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~UUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUN| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UN-NNGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU... .(.......C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- AAC-----GU 1981 -CGC-A--(- GAGA-)-CGC -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. ATH 2.1.6 ATCC 17001 (T). ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 665-673 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17001 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25312 ATCC 17001 (T) = NCIMB 11692 = NCIMB 8288 = NCIMB 8252 = ATCC 11168 = DSM 123 isolate_name= ATH 2.1.6 NB: Rps.palus2 & Rps.palus7 both released due to many differences BASE COUNT 347 a 338 c 446 g 281 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGC -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris.. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87279|g1165140 BASE COUNT 363 a 353 c 466 g 298 t 2896 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGC -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palu10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris.. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Roh,J., Ikuta,M., Inui,M., Yamagata,H. and Yukawa,H. TITLE Characterization of endogenous plasmid from Rhodopseudomonas palustris S55 JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84187|g1405354 (bases 1 to 1480) BASE COUNT 363 a 353 c 466 g 298 t 2896 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -UGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris.. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Hutson,R.A., van der Woude,B. and Collins,M.D. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89815|g927513 BASE COUNT 213 a 179 c 265 g 164 t 3555 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. GH. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. GH. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of some purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59068 isolate_name= GH NB: ATCC 17001 removed because didn't receive culture from ATCC BASE COUNT 358 a 347 c 445 g 292 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UCCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGC -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- NCN-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. R-1. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. R-1. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14435|g633107 isolate_name= R-1 NB: several aberrant strings of N's removed BASE COUNT 326 a 294 c 402 g 264 t 3090 others ORIGIN 1 .......... .......... .......... ...NANCUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--CG----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 U-CU-AAG|U CAG---AGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-CA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)N ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CCUUNG ACA-UG|--- ---------U ---CCAGG.. ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... ........C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCAA-AAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.palus4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas palustris str. 2.1.6. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas palustris str. 2.1.6. ORGANISM Rhodopseudomonas palustris. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55496|g175820 isolate_name= 2.1.6 BASE COUNT 73 a 58 c 81 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2007 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2007. str. SBR2007. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2007. str. SBR2007. ORGANISM str. SBR2007. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84552|g871673 isolate_name= SBR2007 BASE COUNT 96 a 82 c 120 g 71 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACNC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.lupini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium lupini.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium lupini. ORGANISM Bradyrhizobium lupini. REFERENCE 1 AUTHORS ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87273|g1165004 BASE COUNT 358 a 356 c 467 g 299 t 2896 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-CA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spT_1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. T-1. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. T-1. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41525|g767686 isolate_name= T-1 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1445 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1445. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1445. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12900|g608007 nat_host= Arachis hypogaea isolate_name= MAR 1445; TAL 1775; NC 92 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.10324 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41530|g767693 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1574 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1574. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1574. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12904|g608011 nat_host= Arachis hypogaea isolate_name= MAR 1574; TAL 1276 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1555 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1555. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1555. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12903|g608010 nat_host= Vigna unguiculata isolate_name= MAR 1555; TAL 11 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.IRB309 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia on the basis of fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04717|g440221 nat_host= Crotalaria juncea from India BASE COUNT 73 a 57 c 79 g 50 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--AA----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn_59 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE polymerase chain reaction-based sequencing of a 16S rRNA gene segment Phylogeny of the phototrophic rhizobium strain BTAi1 by JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55489 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1600 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1600. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1600. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12909|g608016 nat_host= Vigna unguiculata isolate_name= MAR 1600; Z 55 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1589 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1589. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1589. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12908|g608015 nat_host= Arachis hypogaea isolate_name= MAR 1589; NC 83.2; IC 7015 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1605 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1605. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1605. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12910|g608017 nat_host= Vigna unguiculata isolate_name= MAR 1605; Z 105 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1587 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1587. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1587. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12907|g608014 nat_host= Arachis hypogaea isolate_name= MAR 1587 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1586 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1586. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1586. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12906|g608013 nat_host= Arachis hypogaea isolate_name= MAR 1586 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spSMS2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. NC6. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. NC6. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41524|g767688 isolate_name= NC6 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spNC6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. NC6. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. NC6. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41523|g767687 isolate_name= NC6 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spDesm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 253. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 253. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12888|g608004 nat_host= Desmodium barbatum isolate_name= MAR 253; Madison 625 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65573|g556800 BASE COUNT 62 a 53 c 75 g 49 t 4137 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC23 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65578|g556797 BASE COUNT 62 a 53 c 75 g 49 t 4137 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and Blastobacter denitrificans. JOURNAL FEMS Microbiol. Lett. 96, 241-246 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66024 LMG 6138 (T) = NZP 5549 nat_host= Glycine max Merr. from Japan; Glycine hispida BASE COUNT 352 a 345 c 457 g 286 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12781 BASE COUNT 351 a 343 c 453 g 286 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G NCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-NC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGN UNGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp55S 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. 55S. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. 55S. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14507 isolate_name= 55S BASE COUNT 365 a 357 c 466 g 295 t 2893 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AACUUG- AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AA----- ---------- ---------- ---------- ---CCG-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCCU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AGG-G(G 2881 -CAA)CCCC- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp129 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. 129. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. 129. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14508|g537398 isolate_name= 129 BASE COUNT 363 a 357 c 467 g 296 t 2893 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AACUUG- AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AA----- ---------- ---------- ---------- ---CCG-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCCU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-AGG-C(G 2881 -CAA)GUCC- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE phylogenetic identification Distribution of Rhizobia in leguminous plants surveyed by JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11345|g464202 BASE COUNT 362 a 357 c 468 g 297 t 2892 others ORIGIN 1 .......... .......... .......... ...AACUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -C|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-AGG-G(G 2881 -CAA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum str. MAR 1491 USDA 110. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum str. MAR 1491 USDA 110. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Organism information Culture collection: USDA 110 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13430 nat_host= Glycine max (from U.S.?) nat_host= Glycine max isolate_name= MAR 1491 BASE COUNT 355 a 352 c 462 g 288 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -C|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-AGG-G(G 2881 -CAA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn_31 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55487 USDA 31 = LMG 6135 nat_host= Glycine max from U.S. NB: Dupuy et al. IJSB 44(3):461-473 (1994) list this as Bdr.elkanii BASE COUNT 73 a 58 c 81 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn_76 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia on the basis of fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information REFERENCE 2 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55490 USDA 76 (T) = LMG 6134 nat_host= Glycine max (from U.S.?) NB: Dupuy et al. IJSB 44(3):461-473 (1994) list this as Bdr.elkanii BASE COUNT 73 a 58 c 81 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.elkani 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium elkanii.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium elkanii. ORGANISM Bradyrhizobium elkanii. REFERENCE 1 AUTHORS van Berkum,P.B., Prevost,D. and Laguerre,G. TITLE Phylogeny of Bradyrhizobium japonicum, Bradyrhizobium elkanii, and several bradyrhizobial strains originating from the nodules of Astragalus species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U35000|g1003014 (bases 1 to 1479) BASE COUNT 359 a 353 c 467 g 300 t 2897 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAUC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-G(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -UC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp9520 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Dupuy,N., Willems,A., Pot,B., Dewettinck,D., Vandenbruaene,I ., Maestrojuan,G., Dreyfus,B., Kersters,C. and Collins,M.D. TITLE Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida JOURNAL Int. J. Syst. Bacteriol. 44, 461-473 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70402 LMG 9520 = BR 29 nat_host= unknown from surface soil in Brazil BASE COUNT 354 a 343 c 457 g 286 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp0689 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Dupuy,N., Willems,A., Pot,B., Dewettinck,D., Vandenbruaene,I ., Maestrojuan,G., Dreyfus,B., Kersters,C. and Collins,M.D. TITLE Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida JOURNAL Int. J. Syst. Bacteriol. 44, 461-473 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70405 LMG 10689 = ORS 133 nat_host= Acacia albida from 30.0 m depth from Louga,North Senegal BASE COUNT 353 a 345 c 459 g 284 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp9980 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Dupuy,N., Willems,A., Pot,B., Dewettinck,D., Vandenbruaene,I ., Maestrojuan,G., Dreyfus,B., Kersters,C. and Collins,M.D. TITLE Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida JOURNAL Int. J. Syst. Bacteriol. 44, 461-473 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70404 LMG 9980 = BR 4406 nat_host= Enterolobium ellipticum from surface soil in Brazil BASE COUNT 354 a 344 c 457 g 286 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp9966 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Dupuy,N., Willems,A., Pot,B., Dewettinck,D., Vandenbruaene,I ., Maestrojuan,G., Dreyfus,B., Kersters,C. and Collins,M.D. TITLE Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida JOURNAL Int. J. Syst. Bacteriol. 44, 461-473 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70403 LMG 9966 = BR 3621 nat_host= Acacia mangium from surface soil in Brazil BASE COUNT 354 a 342 c 458 g 286 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUG| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp9514 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Dupuy,N., Willems,A., Pot,B., Dewettinck,D., Vandenbruaene,I ., Maestrojuan,G., Dreyfus,B., Kersters,C. and Collins,M.D. TITLE Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree Acacia albida JOURNAL Int. J. Syst. Bacteriol. 44, 461-473 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70401 LMG 9514 = BR 6011 nat_host= Lonchocarpus costatus from surface soil in Brazil BASE COUNT 354 a 342 c 456 g 286 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACU-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -AGUUCUU-- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- -----G--G| ACC-GG-AGA |---C|A--G 2161 GU-GN-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD51 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26238|g498442 library_source= unidentified soil bacterium from paddy field BASE COUNT 59 a 71 c 85 g 62 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-UU--CUC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-GG -G-GG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGG-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13429 BASE COUNT 356 a 350 c 463 g 287 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A AGUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -C|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------- ---CCGGU-C GCG----GAC 1981 -UCC-A--(- GAGA-)-CGG -A-GUU---- C--------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG--A| CCG-GA--GA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-AGG-G(G 2881 -CAA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87272|g1165003 BASE COUNT 361 a 356 c 465 g 298 t 2896 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn136 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23331|g431455 BASE COUNT 275 a 261 c 347 g 226 t 3267 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum str. MAR 1491 USDA 110. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum str. MAR 1491 USDA 110. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Organism information Culture collection: USDA 110 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23330|g431454 nat_host= Glycine max (from U.S.?) nat_host= Glycine max isolate_name= MAR 1491 BASE COUNT 275 a 261 c 347 g 226 t 3267 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Kuendig,C., Beck,C., Hennecke,H. and Goettfert,M. TITLE A single rRNA gene region in Bradyrhizobium japonicum JOURNAL J. Bacteriol. 176, 5151-5154 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35330|g515768 (bases 841 to 2330) NB: atcc line should contain USDA 110? BASE COUNT 362 a 361 c 467 g 300 t 2886 others ORIGIN 1 .......... .......... .......... ..CCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCAGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-ACCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-GCG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- UA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn110 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum str. MAR 1491 USDA 110. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum str. MAR 1491 USDA 110. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Organism information Culture collection: USDA 110 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55485 nat_host= Glycine max (from U.S.?) nat_host= Glycine max isolate_name= MAR 1491 BASE COUNT 72 a 60 c 82 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.jpn407 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55488 BASE COUNT 72 a 60 c 82 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.liaoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium liaoningensis str. ESG 2062. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium liaoningensis str. ESG 2062. ORGANISM Bradyrhizobium liaoningensis. REFERENCE 1 AUTHORS Xu,L.M., Ge,C., Cui,Z., Li,J. and Fan,H. TITLE Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans JOURNAL Int. J. Syst. Bacteriol. 45, 706-711 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86065|g1066020 isolate_name= ESG 2062 BASE COUNT 73 a 59 c 82 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----UU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.IRB230 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia according to fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04719|g440223 nat_host= Aeschynomene nilotica from Laguna, Philippines BASE COUNT 71 a 58 c 80 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.IRBG2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. IRBG 2. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. IRBG 2. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with Bradyrhizobia according to fatty acids and ribosomal RNA JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04715|g440219 nat_host= Aeschynomene afraspera from Laguna, Philippines isolate_name= IRBG 2 BASE COUNT 71 a 58 c 80 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.ORS322 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia according to fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04716|g440220 nat_host= Aeschynomene afraspera from Senegal BASE COUNT 71 a 58 c 80 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phr.MKAa3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhizobium sp. str. MKAa 3. ACCESSION No information KEYWORDS No information. SOURCE Photorhizobium sp. str. MKAa 3. ORGANISM Photorhizobium sp. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23409|g431444 isolate_name= MKAa 3 BASE COUNT 219 a 210 c 273 g 186 t 3488 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AU...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ....GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phr.MKAa_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhizobium sp. str. MKAa 2. ACCESSION No information KEYWORDS No information. SOURCE Photorhizobium sp. str. MKAa 2. ORGANISM Photorhizobium sp. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23408|g431443 isolate_name= MKAa 2 BASE COUNT 269 a 249 c 333 g 218 t 3307 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp8295 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77119|g443823 BASE COUNT 197 a 177 c 246 g 161 t 3595 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-....A A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--G... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .CUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUAA-G.... .|.|...... .......... 1801 ........(C AUU)---C-C UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U....... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phr.IRBG2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhizobium sp. str. IRBG2. ACCESSION No information KEYWORDS No information. SOURCE Photorhizobium sp. str. IRBG2. ORGANISM Photorhizobium sp. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23406|g431441 isolate_name= IRBG2 BASE COUNT 137 a 134 c 165 g 120 t 3820 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ...GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -UAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-A--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AU-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(...CAA-C G)--CGCAGG 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GUU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-AC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-GCCAC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 A-CA-CU-C- U-AAG-GA.. .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phr.sp230 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhizobium sp. str. IRBG 230. ACCESSION No information KEYWORDS No information. SOURCE Photorhizobium sp. str. IRBG 230. ORGANISM Photorhizobium sp. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23407|g431442 nat_host= Aeschynomene nilotica from Laguna, Philippines isolate_name= IRBG 230 BASE COUNT 271 a 249 c 330 g 219 t 3307 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-U--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGAU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-AC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UAG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.H58 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. H58. str. H58. ACCESSION No information KEYWORDS No information. SOURCE str. H58. str. H58. ORGANISM str. H58. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28792|g469490 isolate_name= H58 BASE COUNT 100 a 86 c 118 g 76 t 3996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .CCG-GCAAG 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUCCGUG( C......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp2257 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. NZP 2257 (Lotus). ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. NZP 2257 (Lotus). ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55486 isolate_name= NZP 2257 (Lotus) BASE COUNT 73 a 58 c 81 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.NC123 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. NC123. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. NC123. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41529|g767692 isolate_name= NC123 BASE COUNT 73 a 58 c 81 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phr.thpson 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhizobium thompsonianum str. BTAi. ACCESSION No information KEYWORDS No information. SOURCE Photorhizobium thompsonianum str. BTAi. ORGANISM Photorhizobium thompsonianum. REFERENCE 1 AUTHORS Wong,F.Y.K., Stackebrandt,E., Ladha,J.K., Fleischman,D.E., Date,R.A. and Fuerst,J.A. TITLE Phylogenetic analysis of Bradyrhizobium japonicum and photosynthetic stem-nodulating bacteria from Aeschynomene species grown in separated geographical regions JOURNAL Appl. Environ. Microbiol. 60, 940-946 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23405|g431440 isolate_name= BTAi NB: possibly the same organism as Bdr.spTAi1 BASE COUNT 269 a 254 c 341 g 219 t 3293 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.IRB231 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia on the basis of fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04720|g440224 nat_host= Aeschynomene denticulata from Laguna, Philippines BASE COUNT 71 a 60 c 83 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agm.oltrph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromonas oligotrophica. ACCESSION No information KEYWORDS No information. SOURCE Agromonas oligotrophica. ORGANISM Agromonas oligotrophica. REFERENCE 1 AUTHORS Mitsui,H. and Hattori,T. TITLE Phylogenetic position of Agromonas oligotrophica JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78366|g1088401 BASE COUNT 322 a 311 c 411 g 264 t 3068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACCAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-A-CCU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CCG-AA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-AGG-G(G 2881 -CAA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp1977 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MA1977-1. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MA1977-1. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41528|g767691 isolate_name= MA1977-1 BASE COUNT 71 a 60 c 83 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MAR411 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 411. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 411. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12898|g608005 nat_host= Arachis hypogaea isolate_name= MAR 411; IC 7011; 3G4b20 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.sp32H1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. 32H1. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. 32H1. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41527|g767690 isolate_name= 32H1 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japo10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum str. MAR 1526 USDA 123. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum str. MAR 1526 USDA 123. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Organism information Culture collection: USDA 123 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12912|g608019 USDA 123 = LMG 6136 nat_host= Glycine max isolate_name= MAR 1526 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1505 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1505. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1505. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12901|g608008 nat_host= Vigna unguiculata isolate_name= MAR 1505; TAL 169 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MAR967 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 967. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 967. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12899|g608006 nat_host= Centrosema sp. isolate_name= MAR 967 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.japon9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium japonicum str. MAR 1491 USDA 110. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium japonicum str. MAR 1491 USDA 110. ORGANISM Bradyrhizobium japonicum. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Organism information Culture collection: USDA 110 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12911|g608018 nat_host= Glycine max (from U.S.?) nat_host= Glycine max isolate_name= MAR 1491 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spTAi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. BTAi-1. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. BTAi-1. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Urtz,B.E., Brown,J.W. and Elkan,G.H. TITLE Phylogeny of cowpea miscellany (Bradyrhizobium sp.) isolates effective with peanut (Arachis hypogaea) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41526|g767689 isolate_name= BTAi-1 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1510 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1510. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1510. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12902|g608009 nat_host= Macrotyloma africanum isolate_name= MAR 1510; TAL 309; CB 756 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MA1576 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 1576. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 1576. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12905|g608012 nat_host= Crotalaria paulina isolate_name= MAR 1576; TAL 1380 (32H1) BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.spTAi1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. BTAi1. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. BTAi1. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS So,R.B., Ladha,J.K. and Young,J.P.W. TITLE Photosynthetic symbionts of Aeschynomene spp. form a cluster with bradyrhizobia on the basis of fatty acid and rRNA analyses JOURNAL Int. J. Syst. Bacteriol. 44, 392-403 (1994) STANDARD No information REFERENCE 2 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55492 nat_host= Aeschynomene indica from U.S. isolate_name= BTAi1 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter denitrificans. ORGANISM Blastobacter denitrificans. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Evidence for a close genealogical relationship between Afipia (the causal organism of cat scratch disease), Bradyrhizobium japonicum and blastobacter denitrificans JOURNAL FEMS Microbiol. Lett. 96, 241-246 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66025 BASE COUNT 354 a 347 c 456 g 286 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-GC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-C-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAA G-AUCUU-GA GUU-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -ACCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---UUGGG-- ACC----GGU 1981 -CGC-A--(- GAGA-)-CGU -G-ACCCU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----UG--C| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- UA-AGG-G(G 2881 -UGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-GCG 3121 G-UGC-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bdr.MAR471 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bradyrhizobium sp. str. MAR 471. ACCESSION No information KEYWORDS No information. SOURCE Bradyrhizobium sp. str. MAR 471. ORGANISM Bradyrhizobium sp. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13011|g608023 nat_host= Desmodium intortum isolate_name= MAR 471 BASE COUNT 72 a 59 c 82 g 51 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAC-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.POR14 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone POR14.. ACCESSION No information KEYWORDS No information. SOURCE clone POR14. ORGANISM clone POR14. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13161|g535414 BASE COUNT 67 a 48 c 68 g 61 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.POR47 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone POR47.. ACCESSION No information KEYWORDS No information. SOURCE clone POR47. ORGANISM clone POR47. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13164|g535417 BASE COUNT 68 a 48 c 67 g 61 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCCU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP601 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP601.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP601. ORGANISM clone JAP601. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09575|g495502 BASE COUNT 68 a 47 c 68 g 61 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAGA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- AGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Giovannoni,S.J., Britschgi,T.B., Moyer,C.L. and Field,K.G. TITLE Genetic diversity in Sargasso Sea bacterioplankton JOURNAL Nature 345, 60-63 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52173 library_source= Sargasso Sea bacterioplankton DNA geog_source= Sargasso Sea, 1-2 metres depth BASE COUNT 78 a 56 c 73 g 67 t 4102 others ORIGIN 1 ~......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-A -C-C-GU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP702 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP702.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP702. ORGANISM clone JAP702. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07035|g466252 BASE COUNT 68 a 47 c 67 g 62 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -CUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C AUG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY10 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY10.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY10. ORGANISM clone PLY10. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13155|g535408 BASE COUNT 90 a 65 c 89 g 72 t 4060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GUAC-GC-- UGGC-GGC-A -----CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUAGG- U-A--UCU-G C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -CUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG....(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.POR22 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone POR22.. ACCESSION No information KEYWORDS No information. SOURCE clone POR22. ORGANISM clone POR22. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13163|g535416 BASE COUNT 68 a 49 c 67 g 60 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGG- U-A--UCU-A C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UU 541 AC-------- -)-GGA---- ---------- ----GAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- A--CCA---- 661 ----UUGG-- AUG---G-|G CCUGC----- -AC|----UU G--AUUA-G- CUU-G---UU 721 GG-CA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UC-AA 781 C-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY14 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY14.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY14. ORGANISM clone PLY14. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13156|g535409 BASE COUNT 116 a 83 c 122 g 89 t 3966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GUAC-GC-- UGGC-GGC-A -----CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGG- U-A--UCU-A C-CCUU---U -GGCC-U-GG 421 -AAU-AA-CA C--------- ------GA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GU----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----A--U- G--CCG---- 661 ----AAAG-- AUG---A-|G CCCGC----- -AC|----UU G--AUUA-G- UUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UC-AA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-AG-(GGA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UUUC-GU-CG 1021 --GG-GAA-- GA-------- ---------( ------AA-- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- --CCC-G-AA U--A--GAGG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP603 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP603.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP603. ORGANISM clone JAP603. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09573|g495500 BASE COUNT 74 a 48 c 66 g 56 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AUA -AU-GUGGG- A-A--UCU-G C-CUUU---U -GGUU-U-GG 421 -AAU-AA-CA C--------- ------GG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GA 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GU----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----A--U- G--CCG---- 661 ----AAAG-- AUG---A-|G CCCGC----- -AC|----UU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AA 781 U-AG-C-UG| -U-UCU--(U -AGA)-GGAA ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACC)G-GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.POR18 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone POR18.. ACCESSION No information KEYWORDS No information. SOURCE clone POR18. ORGANISM clone POR18. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13162|g535415 BASE COUNT 75 a 49 c 65 g 54 t 4133 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAA- 361 -A-CG-AG-U GAGU---AUA -AU-GUGGG- A-A--UCU-G C-CUUU---U -GGUU-U-GG 421 -AAU-AA-CA C--------- ------GG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GA 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GU----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----A--C- G--CCG---- 661 ----AAAG-- AUG---A-|G CCCGC----- -AC|----UU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UC-AA 781 U-AG-C-UG| -U-UCU--(U -AGA)-GGAA ----GA-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.2 METHYLOBACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.2 METHYLOBACTERIA. ORGANISM 2.14.1.9.2 METHYLOBACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.rhodin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium rhodinum. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium rhodinum. ORGANISM Methylobacterium rhodinum. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20849 NCIMB 9421 (T) = LMB 2275 = JCM 2811 = DSM 2163 = TK 0010 = ATCC 14821 BASE COUNT 313 a 311 c 422 g 256 t 3074 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 HY-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----C--Y- S---CG---- 661 ----AANN-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGA A-AGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GN-NU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --G--(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGN -UUAAUC-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-G--(- GAGA-)-CUU -G-GNNU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.rhodi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium rhodinum. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium rhodinum. ORGANISM Methylobacterium rhodinum. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32229|g514408 JCM 2811 = LMB 2275 = DSM 2163 = TK 0010 = NCIMB 9421 (T) = ATCC 14821 BASE COUNT 328 a 347 c 459 g 273 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGUC-GGC-A -GGC-UU--A UCAC-AUGUA A-GUC-GAGA 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----CA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGA A-AGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-G--(- GAGA-)-CUU -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GG-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.zatman 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium zatmanii str. Ps.135 NCIMB 12243 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium zatmanii str. Ps.135 NCIMB 12243 (T). ORGANISM Methylobacterium zatmanii. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20804 NCIMB 12243 (T) = ATCC 43883 isolate_name= Ps.135 BASE COUNT 310 a 313 c 423 g 256 t 3074 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CY-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----C--U- S---CG---- 661 ----AAGN-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUY-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GN-NU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --G--(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGANU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGN -UUAAUC-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-G--(- GAGA-)-CCG -G-GNNU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA---G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.rhodes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium rhodesianum str. Ps.1 NCIMB 12249 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium rhodesianum str. Ps.1 NCIMB 12249 (T). ORGANISM Methylobacterium rhodesianum. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20850 NCIMB 12249 (T) = ATCC 43882 isolate_name= Ps.1 NB: duplicated by Mlb.rhode2? BASE COUNT 312 a 310 c 421 g 259 t 3074 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU--C (--UU----- ---------- ---------- 241 --------CG -)GA-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUNN--- ---)------ ---------| -----C--U- S---CG---- 661 ----AAGN-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUY-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GN-NU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --G--(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGANU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGN -UUAAUC-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GNNU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA---G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.GK118 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. GK118. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. GK118. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A. and Kaneko,M. TITLE Use of PCR-amplified 16S rRNA gene sequences to identify pink-pigmented bacteria found in a potable water treatment system JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25306|g435449 isolate_name= GK118 BASE COUNT 328 a 347 c 460 g 272 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUGA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----AGC 1981 -UCG-A--(- GAGA-)-UCG -G-GUGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.extor3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium extorquens. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium extorquens. ORGANISM Methylobacterium extorquens. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20847 NCIMB 9399 (T) = TK 0001 = DSM 1337 = ATCC 23326 = ATCC 43645 = JCM 2802 = IMET 11113 BASE COUNT 313 a 311 c 423 g 261 t 3068 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- S---CG---- 661 ----AAGN-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GN-NU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --G--(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUC-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GNNU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.sp.M27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. M27 NCIMB 9686. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. M27 NCIMB 9686. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95653 NCIMB 9686 = JCM 2806 = DSM 1339 isolate_name= M27 NB: NCIMB 1990 catalog lists this as Methylobacterium extorquens BASE COUNT 303 a 293 c 406 g 264 t 3110 others ORIGIN 1 .......... .......... .......... NNUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CNC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----C--U- N---CG---- 661 ----AAGN-- AUC---G-|G CNNGC----- -GU|----CU G--AUUA-G- CUAUG---UU 721 GG-UG-GG-( GU-AAN-GG) -N-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UR| -G-UCU--(G -AGA)-GGAU ----GA-U-- NAG-C|C-AC -MCUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCN -(NG-G)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-MM 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-NA-CGGU- A-CCG-G-AA G-AA--UAA- ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCR -CU-GGGC|G UAAA-GGS-- GCG-UAG-GC -G|-GC-CG- 1261 A-UUAANN|U CGG---GGGU G-AAA-NC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GRC-----CG G-AA-GAGGA CWG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UNAAA)-UUN -GU-AGAU-A UU-CGCWAG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GYGG- -CUGUCUN-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-S------ -------SC- G--AAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -G--GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--C----- --SS-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CS -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GNNU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CRU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--NUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU MAU---N--C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CARUG GGA---G-C- GA-AGCGC(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCNGUUCGGA 2941 U-UGCACUC- (UGCNAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UNGUN-AUC 3001 GU-NGA-(UC -AGC-AC)-G CCA-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.sp.PK1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. PK-1 (S.Hirano). ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. PK-1 (S.Hirano). ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95654 isolate_name= PK-1 (S.Hirano) BASE COUNT 315 a 318 c 428 g 259 t 3056 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- AGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--C-G---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| CUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|A CGA---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-GU CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GCCAG-UGG 1741 CG--CC---- --GN-(NAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUG-GC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|U--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CUG --GU(-GA-U AA)-G-C-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAC----C-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C---C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.sp.PR6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. PR-6 (S.Hirano). ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. PR-6 (S.Hirano). ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95655 isolate_name= PR-6 (S.Hirano) BASE COUNT 315 a 315 c 429 g 262 t 3055 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--C-G---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACU-A A|-GGU-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| CUUU-GU-CC 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 CAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|A CGA---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-GU CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -GC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GCCAG-UGG 1741 CG--CC---- --GN-(NAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUG-GC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CUG --GU(-GA-U AA)-G-C-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAC----C-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C---C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.extor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium extorquens. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium extorquens. ORGANISM Methylobacterium extorquens. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95656 NCIMB 9399 (T) = TK 0001 = DSM 1337 = ATCC 23326 = ATCC 43645 = JCM 2802 = IMET 11113 BASE COUNT 301 a 298 c 410 g 260 t 3107 others ORIGIN 1 .......... .......... .......... NNUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA N-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-UN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- WGUN-GCNG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-C-UU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUNCC-GG 481 AU-ACD---- ---------- ---------- ---------- ----CC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----N--Y- Y--CGG---- 661 ----AAGN-- AUC---G-|G CNNGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UN-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-RU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G NA-G)NCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-RAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|C -S--GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --NC-(UAA- ---C)G-CA- UUHA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -NAA-GGAAU UG-ACGGG-G -G-G-CC--G 1861 C-N--NA-AG NGGUGG-AGC A-U-GU-GGU -UUHAUU-CG -(ANNNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GNAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C YU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UM -A-AGUC-CU CAU-G----C -HUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACR AUGGC-G-GU -GA--CAGUG GRA---G-C- GA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- WCAGUUCGGA 2941 U-UGCACUC- (UGCNAC-A- C)-GGGUAGN -AUNAAG-MR -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)NG CCA-CGGUN- AAUAM-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.extor1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium extorquens. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium extorquens. ORGANISM Methylobacterium extorquens. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS ATCC 43645 = TK 0001 = DSM 1337 = ATCC 23326 = NCIMB 9399 (T) = JCM 2802 = IMET 11113 BASE COUNT 334 a 344 c 459 g 278 t 2961 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CNUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGN-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GNGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GN-NU CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GNAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| NGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-NC--NUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-N NUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.GK101 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. GK101. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. GK101. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A. and Kaneko,M. TITLE Use of PCR-amplified 16S rRNA gene sequences to identify pink-pigmented bacteria found in a potable water treatment system JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25305|g435448 isolate_name= GK101 BASE COUNT 327 a 348 c 461 g 271 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GGGAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.zatma2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium zatmanii str. MA1/5 JCM 2819. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium zatmanii str. MA1/5 JCM 2819. ORGANISM Methylobacterium zatmanii. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 2819 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32230|g514409 JCM 2819 = NCIMB 10606 isolate_name= MA1/5 BASE COUNT 326 a 349 c 462 g 270 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCU UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GG- 1261 A-UU-GAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UG-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-G--(- GAGA-)-CCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Podbie 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Podbielski,A. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74139|g581030 legacy_attribute= biovar:unnamed bacterium BASE COUNT 313 a 318 c 389 g 272 t 3084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACUC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-C C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( UU-AAC-GU) -C-CUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-A ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AC- C-A---GU-G 901 GGG-AAUAUU G-GACUAU-- GG-GC-(UCA A)-UCC-UGA UCCA|-CCCA UGCC-UC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CC-GGCU-A ACUUC-GUG( CCA--GCAAC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUUC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-AC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UUCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-GA-GAGGA CAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCC--GA-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----G-UA-G -C----CAC- G-CC-GU--A 1621 AAC-G-AUGC A--UG-CC-- -------A|C -CC-GU-U-G -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCU-AC-G |-UC--CUU- 2281 A---UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CUU-G-CC-C CUUAC-G-GG -AU--GGCC- 2821 A-AAA-AA-C UUC--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-C-C- GA-AAC-C(C 2881 -CGA)GGUU- ---------- GA-CCAAA-U CCCC--CAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UUCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAAAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.rhode2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium rhodesianum. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium rhodesianum. ORGANISM Methylobacterium rhodesianum. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32228|g514407 NB: duplicates Mlb.rhodes? BASE COUNT 326 a 343 c 465 g 272 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AN -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-A CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CGAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UG----GAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -UC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GGGAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.extor4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium extorquens. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium extorquens. ORGANISM Methylobacterium extorquens. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32224|g514403 JCM 2802 = TK 0001 = DSM 1337 = ATCC 23326 = ATCC 43645 = NCIMB 9399 (T) = IMET 11113 BASE COUNT 326 a 348 c 461 g 272 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -UC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUCAG-UGG 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -UCG-A--(- GAGA-)-UCG -G-GGAU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-CAG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.DM4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. DM4. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. DM4. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29029 isolate_name= DM4 BASE COUNT 233 a 218 c 324 g 196 t 3405 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UN----- ---------- ---------- 241 --------CG -)G---G--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--N--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A --CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UNNA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCN-(-- ---------U 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G---CG---- 661 ----AAGG-- AUC---G-|G CNNRC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UGAGG-( GU-AAV-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -NCUGG-G-A 841 (CUGA-GG.. ...)...... .......... .(....)... .......... .......... 901 .......... ...ACNAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GN-GN 961 G-A-GU-G-A U-GAA--G-G CC(--NN-AG --)GG-UNGU AAA--GCNN| NNUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAC ---------C 1141 --CCGGCU-N ACUUC-G..( .......... .........) .......... |.GG...... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......AU- 1321 -UGCC-UUCG A-UAC-UNGU K-GGCUU-GA GAC-----CG G-AA-GAGGA CAG-C|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UVAAA)-UUN -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUACUG-- ---------- ---------- ---------G 1501 UCC--NN-NN CUGACG-CUG AG-G------ -------CG- N-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUNA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA A--UGGC--- -------C|N -CG-GU-NGG -CC-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAG -GUNAG-UGG 1741 CG--CC---- --GN-(NNA- ---C)G-CA- UUAA-GCAUU R|C|G-RCC- U-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-RAANCCC -AUCCCUUAN UG-GCAUK-U -U-A-CC--K 1861 KGR--GA-GA UGGGNN-U.. .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .C-------- ---US----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----G----| GNG-UG-ACA |---C|N--G 2161 GU-GC-NGCA UG|G-CUN-- UCG-UNA|-G N-N---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA ...)...... .......... .......... .......... |......... 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CNG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--NN -A-AGUC-MD CAU-G-G--- -NDAC-G-GG -AU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA---N-C- GA--GC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCN--AAAA -AC-C-GUC- UCNGUUCGGA 2941 U-UGCNCUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GNAU-CGC- -UNGUN-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCG-CGGUN- NAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.extorq 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium extorquens str. AM1. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium extorquens str. AM1. ORGANISM Methylobacterium extorquens. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29027 isolate_name= AM1 BASE COUNT 334 a 305 c 410 g 276 t 3051 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A UGGC-NU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAUA 361 GA-CG-GG-U GAGUACUAAC UAC-GUGGG- A-A--CGU-A --CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UHNA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- ---------U 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUAC-- ---)------ ---------| -----U--C- G----G---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUG-G---UU 721 CG-UG-AG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UA| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)CGG GGG-GC-NG- C-AC--GUCG 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-ACGU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AU-C- 1021 --GG--AC-- GAUA-AG-GM C-UGC-CGG( -----UUAAU A--------) CCCG-GU-AG 1081 ---------- -------A-C U-GA-CAUU- A-CCU-A-UA C-AA--GAAG ---------C 1141 -CCGGGCU-A ACUCC-GUG( UCA--GCUAG UCGGWUA-A) U-H-C-NAAG |-GGGN-N-- 1201 NAG-CNUUGC UC-GGAAUCN -CU-GGGC|G UAAA-GG-G- GCG-UHG-GC -N|-GA-AN- 1261 A-UU-HAG|U CGG---GGGU G-AAA-GC-C UA-UA--C(- UC-A)A-CCA -CH-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGU U-AUCUU-NA GAC-----AG G-AA-GAGGA CAG-C|GG-A 1381 CU-GCGAGU- GUA-GAG(-G UVAAA)-UAC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GWGG- -CU-CURU-- ---------- ---------- ---------G 1501 CCG---A-NA CUGACG-CUG AG-G------ -------UC- G-UAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------C|A -AG-GU-UGG -CU-G----- ---------- 1681 -(-CU-UG)C ---------- ---------- ---------- --------AG -GUUAG-UGG 1741 UG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-G---(C AAG)---G-C UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-UC-CG 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---ANAG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----CG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UCNACGU- 2281 AG--UUAG-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACGUGAC -A-AGUC-CU CA--A--U-A CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-----C- GA-AGC-C(G 2881 -CGA)GGUR- ---------- GA-GCUAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K19 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K19.. ACCESSION No information KEYWORDS No information. SOURCE clone K19. ORGANISM clone K19. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91534|g987809 BASE COUNT 82 a 78 c 122 g 70 t 4024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 A-UC-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGUU U-GGCUU-GA GAC-----CG G-AA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UU CUGACG-CUG AG-G------ -------CG- C-GAAAAGC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -CC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -GUCAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGA..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.BF10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter sp. str. BF10. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter sp. str. BF10. ORGANISM Blastobacter sp. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z23156 isolate_name= BF10 BASE COUNT 339 a 352 c 457 g 277 t 2951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CG C--------- ------UG-- G(-GAAA-)C -UAGC-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAU-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG--C -G|-GC-CA- 1261 U-AC-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGUG U-GGCUU-GA GUA-----UG U-CA-GAGGU CAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-UC(-G AA-G)GCGG- -CUGACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------U ---CGUG--- -CC----AUC 1981 -CGG-A--(- GAGA-)-UCC -G-GGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.PC3044 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter sp. str. PC30.44. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter sp. str. PC30.44. ORGANISM Blastobacter sp. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z23159 isolate_name= PC30.44 BASE COUNT 335 a 347 c 453 g 275 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-UU--A ACAC-AUGCA A-CUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U UGG---GGGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-AAU- 1321 -UGCC-UUCG A-UAC-UGCU U-GGCUU-GA GUG-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 AC-CAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CC-- -------A|A -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UU)- ---------- ---------- ---------- -------CAC -CUCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUGC 1801 GGU-C---(C CAA)---G-A UU-AAAACUC -CAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAAU-CG -(AAACCA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -UGG-A--(- GAGA-)-UUC -A-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)--CC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-C-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF48 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F48. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F48. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32236|g514401 isolate_name= F48 BASE COUNT 330 a 341 c 460 g 275 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GU 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U UGG---GGGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-AAU- 1321 -UGCC-UUCG A-UAC-UGCU U-GGCUU-GA GAC-----CG G-AA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -UUCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----AUG 1981 -GGG-A--(- GAGA-)-UCU -C-CAGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF37 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F37. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F37. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32234|g514399 isolate_name= F37 BASE COUNT 328 a 339 c 457 g 278 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGC-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U UGG---GGGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-AAU- 1321 -UGCC-UUCG A-UAC-UGCU U-GGCUU-GA GUG-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-BA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GA-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAU -CUCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -UGG-A--(- GAGA-)-UUC -A-GGGG--- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- -G-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---N(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-G-GU -GA--CAAUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF42 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F42. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F42. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32235|g514400 isolate_name= F42 BASE COUNT 326 a 341 c 464 g 274 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUC---C -GGUC-U-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UGC-(-- --------UU 541 UG-------- -)-GCA---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-CU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAGA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--GC---- --AC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CACG--- -UU----ACC 1981 -UGG-A--(- GAGA-)-UCC -A-GGGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-G(G 2881 -UGA)CCCU- ---------- GA-GCGAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAG-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F18. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F18. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32233|g514398 isolate_name= F18 BASE COUNT 323 a 342 c 465 g 277 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGUC-GGC-A -GGC-UU--A UCAC-AUGUA A-GUC-GAGA 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUC---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----AUG 1981 -GGG-A--(- GAGA-)-UUC -C-CAGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.mesphl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium mesophilicum. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium mesophilicum. ORGANISM Methylobacterium mesophilicum. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32225|g514404 Former RDP Sids: Mphl.2829 BASE COUNT 323 a 343 c 465 g 274 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUC---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---CUUG--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CUCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----AUG 1981 -GGG-A--(- GAGA-)-UUC -C-CAGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F15. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F15. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32232|g514397 isolate_name= F15 BASE COUNT 329 a 342 c 462 g 272 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUC---C -GGUU-C-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-AGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF05 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F05. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F05. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32231|g514396 isolate_name= F05 BASE COUNT 326 a 343 c 464 g 272 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUC---C -GGUU-C-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.radtol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium radiotolerans. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium radiotolerans. ORGANISM Methylobacterium radiotolerans. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32227|g514406 BASE COUNT 323 a 339 c 466 g 272 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUC---U -GGUU-C-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UCU -G-GGGG--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-G-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.spF73 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium sp. str. F73. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium sp. str. F73. ORGANISM Methylobacterium sp. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32237|g514402 isolate_name= F73 BASE COUNT 324 a 342 c 465 g 274 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUC---U -GGUC-U-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GGCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.PC3039 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter sp. str. PC30.39. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter sp. str. PC30.39. ORGANISM Blastobacter sp. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z23158 isolate_name= PC30.39 BASE COUNT 331 a 351 c 471 g 282 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUC---U -GGUC-U-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UACC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG--C -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GUCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 CC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 G-C-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----AUG 1981 -GGG-A--(- GAGA-)-UCC -U-CAGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(GUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G--C-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGGA- U-UAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-C- -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGUG-U 3301 G---AAGUC- GCAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.BF15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter sp. str. BF15. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter sp. str. BF15. ORGANISM Blastobacter sp. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z23160 isolate_name= BF15 BASE COUNT 333 a 349 c 472 g 283 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------UG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUC---U -GGUC-U-GG 421 -AAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UAGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----GAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA U-CC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AG G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-GU- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -GUCC-UUCG A-UAC-UGGG A-CGCUU-GA GUA-----UG G-UA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CU-GU-UGG -GG-UG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CAC -CGCAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CU-UUG ACA-UG|--- ---------G ---CGUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CGC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)--CC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-AC -AA-CC---- ---------- ---------- -----(---- -GC-A----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.organ2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium organophilum str. XX JCM 2833. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium organophilum str. XX JCM 2833. ORGANISM Methylobacterium organophilum. REFERENCE 1 AUTHORS Hiraishi,A., Furuhata,K., Matsumoto,A., Koike,K.A., Fukuyama ,M. and Tabuchi,K. TITLE Phenotypic and genetic diversity of chlorine-resistant Methylobacterium strains isolated from various environments JOURNAL Appl. Environ. Microbiol. 61, 2099-2107 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 2833 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32226|g514405 JCM 2833 = DSM 760 = ATCC 27886 = NCIMB 11278 (T) isolate_name= XX BASE COUNT 330 a 342 c 461 g 272 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 U-UU-AAG|U CGG---GGGU G-AAA-GC-C UG-UGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGG U-GGCUU-GA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUCAG-UGG 1741 CG--CA---- --GC-(CAA- ---C)G-CU- UUGA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-G-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCG--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UC-UU-ACCC -GAC-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlb.organo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacterium organophilum str. XX. ACCESSION No information KEYWORDS No information. SOURCE Methylobacterium organophilum str. XX. ORGANISM Methylobacterium organophilum. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29028 isolate_name= XX BASE COUNT 313 a 298 c 402 g 258 t 3105 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG UGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-NN--A ACAC-AUGCA A-GUN-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-C- (---U----- ---------- ---------- 241 --------CG -)GN-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUN-GCAG- 361 -A-CN-GG-U GAGU---AAC -AC-GUGG-- A-A--CGUGA C-CCUU---U -RGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UNNA-G--C UNAUACC-GG 481 CU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------AC 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- N--CGG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACURG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGC-C-UCG -(UAGG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUN| UUUU-GU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AA--UAA- ---------C 1141 -CCCGGCYNC UCUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UUA-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGNC- NCG-UAG-GC -G|-GC-CA- 1261 U-UU-AAN|U CGG---GGGU G-NNA-AC-C UA-GGG-C(- UC-A)A-CCA -CA-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGG U-AUCUUUGA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UNC -GU-AGAU-A UU-CGCAAG- AACA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CNAACUG-- ---------- ---------- ---------G 1501 UCC--RN-NA CUGAGC-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -G--AG---- ---------- 1681 -(-CU-UU)G ---------- ---------- ---------- -------CUG -CUCAG-UGN 1741 CG--CA---- --GC-(CAA- ---C)G-CU- UUGA-GCNUU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UG|--- ---------G ---CAUG--- -UU----ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGNCUU- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG---| CGU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UAAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUN- 2281 AG--UUGC-N AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CGG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-UGG-A UG-ACGUCAU -A-AGUC-CU NAU-G----- CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-G-G-C- GA-GAG-G(G 2881 -NGA)CCUN- ---------- GA-GCAAA-U CCCG--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- -)-GGGUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bo.thiooxi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bosea thiooxidans str. BI-42 DSM 9653 (T). ACCESSION No information KEYWORDS No information. SOURCE Bosea thiooxidans str. BI-42 DSM 9653 (T). ORGANISM Bosea thiooxidans. REFERENCE 1 AUTHORS Das,S.K., Mishra,A.K., Tindall,B.J., Rainey,F.A. and Stackebrandt,E. TITLE Oxidation of thiosulfate by a new bacterium, Bosea thiooxidans (strain BI-42) gen. nov., sp. nov.: analysis of phylogeny based on chemotaxonomy and 16S ribosomal DNA sequencing JOURNAL Int. J. Syst. Bacteriol. 46 (4), 981-987 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 9653 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81044|g1666672 isolate_name= BI-42 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 323 a 333 c 431 g 279 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GNNC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--NN----- ---------- ---------- 241 --------CG -)NU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-NCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUU---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- U--CCG---- 661 ----AUAG-- AUC---G-|U CCCGC----- -GU|----CU G--ACUA-C- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GN- CGA------- -----UC-AG 781 U-AN-C-UG| -C-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ANUGG.... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......U-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GU-CC 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-CU- 1261 C-UU-AAG|U CGG---GGGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAU- 1321 -UGCC-UUCG A-UAC-UGGG A-GUCUU-GA GUU-----CG G-AA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU A--UG-CC-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CCGG--- UUU----GAU 1981 CGGC-A--(- GAGA-)-UGC -C-UUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GNG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGC-A-G-C- GA-AAG-G(G 2881 -CGA)CCUC- ---------- GA-GCUAA-U CCCA--AAAA -GC-C-GUC- UCAGUUCAGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-GCG 3121 U-CGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG CUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G23 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G23.. ACCESSION No information KEYWORDS No information. SOURCE clone G23. ORGANISM clone G23. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91275|g987023 BASE COUNT 86 a 75 c 111 g 70 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CC- 1261 A-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAU G-GUCUC-GA GUA-----UG G-AA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CC-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -CUCAG-UGG 1741 CG--CM---- -----(KAA- ---C)G-CU- UUAA-GCAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.3 BEIJERINCKIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.3 BEIJERINCKIA_SUBGROUP. ORGANISM 2.14.1.9.3 BEIJERINCKIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bei.indica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Beijerinckia indica subsp. indica ATCC 9039 (T). ACCESSION No information KEYWORDS No information. SOURCE Beijerinckia indica subsp. indica ATCC 9039 (T). ORGANISM Beijerinckia indica. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of some purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59060 BASE COUNT 347 a 325 c 446 g 300 t 2958 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCNN- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CAU-A C-CCUU---U -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC NGCGGUN-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U NAG---GGGU G-AAA-UC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG G-AUCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UAG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CU-UUG ACA-UG|--- ---------U ---CUCG-U- UUG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CGA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CNG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-N-G-C- GA-AGG-G(G 2881 -CGN)CCCU- ---------- CA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 U-UUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A N-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.acidop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas acidophila str. 7050 ATCC 25092. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas acidophila str. 7050 ATCC 25092. ORGANISM Rhodopseudomonas acidophila. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of some purple bacteria JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25092 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34128 isolate_name= 7050 BASE COUNT 364 a 341 c 449 g 300 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UACAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- A-A--CAU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCU-(-- --------UU 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AGU---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CC 1021 --AC-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUG-G-GC G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -N|-GA-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UG-C CG-GAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA G-AUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UAG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CUUGG-- ACG----GAU 1981 -AGC-A--(- GAGA-)-UGU -U-AUCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CGA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AAG-G(G 2881 -CGA)CCUC- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 U-UUC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- NCU-NGG... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S18 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S18. str. S18. ACCESSION No information KEYWORDS No information. SOURCE str. S18. str. S18. ORGANISM str. S18. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28800|g469504 isolate_name= S18 BASE COUNT 97 a 80 c 113 g 70 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........G- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-AC-CU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-CA G-AA--UAAG ---------C 1141 -CCCGU.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.caulin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55491 ORS 571 (T) = LMG 6465 nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 BASE COUNT 69 a 59 c 84 g 49 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUU---C -AGUU-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 AA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUGA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Viikki 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 1. str. 1. ACCESSION No information KEYWORDS No information. SOURCE str. 1. str. 1. ORGANISM str. 1. REFERENCE 1 AUTHORS Saano,A.K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91891|g1017414 legacy_attribute= biovar:Viikki forest soil DNA isolate_name= 1 BASE COUNT 59 a 54 c 79 g 50 t 4134 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUC---C -GGUU-C-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GG 481 AU-ACS---- ---------- ---------- ---------- ---GCU-(-- --------GA 541 GA-------- -)-GGC---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----GAGG-- AUU---G-|G CCCGC----- -GU|----UC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.4 METHYLOCYSTIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.4 METHYLOCYSTIS_SUBGROUP. ORGANISM 2.14.1.9.4 METHYLOCYSTIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msi.tricho 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylosinus trichosporium str. OB3b. ACCESSION No information KEYWORDS No information. SOURCE Methylosinus trichosporium str. OB3b. ORGANISM Methylosinus trichosporium. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29024 isolate_name= OB3b BASE COUNT 348 a 330 c 447 g 294 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGCA-GC (--GC----- ---------- ---------- 241 --------AU -)GC-GUAG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A --CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UWAA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----U--C- G---CG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-GCUGUU 721 GG-UG-AG-( GU-NAA-GG) -C-UNACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|K-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UAC-)--G GAG-GC-AG- C-A---GU-G 901 -GG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAA- ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUAGU UC-GGAAUCG -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-CAG|U CCG---GGGU G-AAA-UC-C GA--GG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UNNN A-UMC-UGCG U-AUCUU-GA GUC-----GG G-AA-GAGGU AAG-U|AUGA 1381 CU--CGAGU- GUA-GA-(-G UG-AA)-UUC -GU-AGAU-A UU-CGCA-G- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CU-ACUG-- ---------- ---------- ---------G 1501 CCC--GN-NA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCAG-UGG 1741 CG--CA---- --GG-(UAA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAAC-C -GCU-AGGAG UU-RUUGG-G -G-G-UC--C 1861 C-ACCGC-AG CGGUGG-AGU --N-AN-NUN GUUAAUN--U -(AANNC--C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CCGG-U- AUG----GUG 1981 -GUC-A--(- GAGA-)-UGA -C-UUCC--- UU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GA--UA |---C|A--G 2161 GU-GC-UGCA UN|G-CUN-- UCG-UCA|-G N-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCA-UC-A |GCCGACUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-N A-CU-G-CCG --GU(-GA-U AA)-UCC-GA CGAGG-A-AG 2761 GUAG-GGG-A UG-ACG--UC -A-AGUC-CU MAU-G--C-G CUUAC-GAGG -CU--VGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A---C- GA-CGA-M(G 2881 -UGA)CGCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-UGG-CC UUGUA----C 3061 ACACC-CNC- GUC-ACA--- --CCA-UGGG A--GU-NGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C N-AU-UA-CC A-CGGC-AGG GUU-CA-UG- ACU-GGGG-U 3301 N---AAGUN- NNNA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mls.methan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylosporovibrio methanica str. 81Z. ACCESSION No information KEYWORDS No information. SOURCE Methylosporovibrio methanica str. 81Z. ORGANISM Methylosporovibrio methanica. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29025 isolate_name= 81Z BASE COUNT 314 a 293 c 397 g 267 t 3105 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGUG-GCNG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A --CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UNNA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----U--C- G---CG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUG-C-UCG -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACGAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-GA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAC ---------C 1141 --CCGGCU-N ACUUC-GUG( CCA--GCUGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CAUAGU UC-GGAAUCG -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-NA-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C GA--GG-C(- UC-A)A-CCU -CG-G-NAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUYUA-GA GUUGAGUAUG C-UA-GAUCU GAG-N|NGAU 1381 CN-AGGACU- GUA-GUG(-U AGAAU)-GAU -CU-AGAU-A UU-CGCAAG- AACA-GCAG- 1441 -U---GC(-G AA-G)GCGN- -CU-ACUG-- ---------- ---------- ---------- 1501 --C-----NN CUGACG-CUG AG-G------ -------U-- C--NNA--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-A----- ---------- 1681 -(CUU-GC)- ---------- ---------- ---------- --------UG -UUCAG-UGG 1741 CG--CA---- --NC-(UAA- ---C)G-CU- UUAA-GCAU- C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACAC -NAG-GGAAU GG-ACUGG-G -G-C-GG--C 1861 G-U--GC-AG CNGUGC-AGC --U-GU-NGU -NNNAUM-CG -(ANNNC--C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-U-|--- ---------U ---CUAG-U- AUG----GUC 1981 -GAC-A--(- GAGA-)-UGU -C-UUCC--- UU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CUA-GA-ACA |---C|A--G 2161 GU-RC-UGCA UN|G-CUN-- -CG-UCA|-G C-H---CG-U |AU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCN-C AA-------- CGAG-C--GC AACC--UC-A |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-NN-A A-CU-G-C-G --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-G CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-AGG-G(G 2881 -CGA)CCCG- ---------- GA-GCAAA-U CUCC--AAAA -AG-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcy.parvus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocystis parvus str. OBBP. ACCESSION No information KEYWORDS No information. SOURCE Methylocystis parvus str. OBBP. ORGANISM Methylocystis parvus. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29026 isolate_name= OBBP BASE COUNT 328 a 286 c 403 g 262 t 3097 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCG A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-ACGUGU-G A-CUUU---C AGGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UWNA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----U--C- G---CG---- 661 ----AAAG-- AUC---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAU-GG) -C-GCACN-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCU -(AACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAGAUU G-GACAGA-- UG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CA(--AA-AG --)GG-UUGU AAA--GCUN| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-RA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU AC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U NAG---GGGU G-AAA-UC-C GA--GG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGM G-GUCUC-GA GUU-----NN G-GA-GAGGU AAG-U|GG-A 1381 CU--CGAGU- GUA-GAG(-G UG--A)-U-C -GU-AGAU-A U--CGCAAG- -ACA--CAG- 1441 -U-G-GC(-G AA-G)GCGN- -UC-ACUG-- ---------- ---------- ---------- 1501 --C------N CUGACG-CUG AG-G------ -------UG- ---NNA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--N 1621 AAC-G-AUGG A--UG-CU-- -------N|G -CC-GU-UGG -G--AGC--- ---------- 1681 -(-UA-U-)- ---------- ---------- -G-------- -------CUN -UUCAG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CU- UUAA-GCAU- C|N|G-CCU- G-GACGGAAU 1801 GAU-C---(U CAA)---G-A UU-AAAACUN -NAG-CUAAU ---ACUGG-A -U-G-ACGGG 1861 CCUCUAC-CA AAAAGA-GUH A-U-NU-NGU -UUAAUC-CV -(ACANNN-C G)--CGCAGA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------G ---CCGG--- UAU----GAU 1981 -GCC-A--(- GAGA-)-UGG -A-CGAUC-- UU-------- --AAC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----GG---| CGA-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCU-CG-C |-CA--CUA- 2281 AG--UAUG-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CA-C- U-AUG-GG-G N-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G--C-G CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CCAUG GGG-A-G-C- GAGAAG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCNGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msi.sp.B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylosinus sp. str. B. ACCESSION No information KEYWORDS No information. SOURCE Methylosinus sp. str. B. ORGANISM Methylosinus sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95663 isolate_name= B BASE COUNT 320 a 291 c 407 g 263 t 3095 others ORIGIN 1 .......... .......... .......... ..UGAACUUG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CA (--GC----- ---------- ---------- 241 -------GCA -)UG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UCAC- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-- --CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UNNA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------AU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- C--GCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UC| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-U ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-UC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C ---GAG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUN A-UAC-UGCG U-AVUAU-GA GUC------G G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAA-)-UUC -GU-AGAU-A UU-CGGAAG- AACA--CAG- 1441 -U-G-GC(-G AA-G)GCGN- -CU-ACUG-- ---------- ---------- ---------G 1501 CCN--N---A CUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GN-(-AA- ---C)G-CU- UUAA-GCAUC N|-|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-ASUNGUA UAKACGAUCG AGCAANNC-G -C-G-CAGAA 1861 CCGUACC-AG C-UUGU-A-C A-U-----GU --GA--U-UG -(AUG--A-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACG-UA|--- ---------U --UCCGG-U- AUG----GUC 1981 -GUC-A--(- GAGA-)-UGA -C-UUCCU-- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-G--ACA |---C|A--G 2161 GU-GC-UGCA UN|G-CNN-- UCG-UCA|-G N-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCU-CA-G |--C--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-A A-CU-G-CAG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU NAU-G-GC-- -UUAC-A-GG -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)UCCG- ---------- GA-GCAAA-U CUCA--AAAA -GC-CAGUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUN- AAUA--GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msi.sp.LAC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylosinus sp. str. LAC. ACCESSION No information KEYWORDS No information. SOURCE Methylosinus sp. str. LAC. ORGANISM Methylosinus sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95664 isolate_name= LAC BASE COUNT 323 a 315 c 426 g 255 t 3057 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| CUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAA- ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U CAA---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG G-GUCUA-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CC-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CU- UUGA-GCAGC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UGAAUG-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CCAG-U- AUG----GUC 1981 -GCC-A--(- GAGA-)-UGG -C-GUCCU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CUG-GA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-GG -CUC-GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-G-G-C- CA-AGG-G(G 2881 -CGA)CCCU- ---------- CA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B3060 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B-3060. str. B-3060. ACCESSION No information KEYWORDS No information. SOURCE str. B-3060. str. B-3060. ORGANISM str. B-3060. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20845 isolate_name= B-3060 BASE COUNT 318 a 316 c 427 g 260 t 3055 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GU----- ---------- ---------- 241 -------AAU -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G --CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UGC-(-- --------GA 541 GA-------- -)-GCA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--C-G---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUA-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCAG-UGG 1741 CU--GC---- ---C-(GAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CCGG-U- AUG----GUC 1981 -G-C-A--(- GAGA-)-UGG -C-AUCCU-- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-C A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-U-GC-C CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCCG- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Msi.sporiu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylosinus sporium str. provided by Y.Trotsenko. ACCESSION No information KEYWORDS No information. SOURCE Methylosinus sporium str. provided by Y.Trotsenko. ORGANISM Methylosinus sporium. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95665 isolate_name= provided by Y.Trotsenko BASE COUNT 346 a 345 c 448 g 274 t 2963 others ORIGIN 1 .......... .......... .......... ......CUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G --CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- -----C-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--C-G---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC-)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C -G-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG G-GUCUA-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCG-- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCAG-UGG 1741 CC--GC---- --AG-(-AA- ---C)G-CU- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -GGAAUG-CA -(AUGCAA-C G)--UGCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------C ---CCGG-U- AUG----AUC 1981 -GCC-A--(- GAGA-)-UGG -C-AUUCU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GAAGCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GC-C A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 GACG-GGG-A UG-ACG--UC -A-AGUC-CU CAUUG-GCGC CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-C-G-C- GA-AGG-G(G 2881 -CGA)CCCU- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCCGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UAG- CU-UU-ACCC -GAA-G-GCG 3121 U-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-AC-GA-CC A-CGGU-AGG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcy.echino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocystis echinoides str. 2. ACCESSION No information KEYWORDS No information. SOURCE Methylocystis echinoides str. 2. ORGANISM Methylocystis echinoides. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE differentiating methylotrophic Bacteria Phylogenetic analysis and development of probes for JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20848 isolate_name= 2 BASE COUNT 294 a 276 c 395 g 258 t 3153 others ORIGIN 1 .......... .......... .......... ...CAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GUC-A -GGC-YU--A ACAC-AUGCA A-GNC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-G --CCUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGA-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCU-NNA UCCA|-GCUA UGCU-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GYUU| UUUC-GC-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-UGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGN|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C -G-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA G-GUCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AGCGCUG-- ---------- ---------- ---------G 1501 CYY--AG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CG-- -------N|G -CC-GU-UCC -CC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CGG -GUCAG-UGG 1741 CA--GC---- --CG-(-AA- ---C)G-CC- UUAA-GCAUC C|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-A CG-C------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -(-------- -)---GCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------C ---CCGG-U- AUG----AUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUUCU-- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GU--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -G-)------ ---------- --AG-C--GC AACAC-UU-G |-CU--YUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CG-CU-C- U-AGG-GR-R A-CU-G-CUG --GU(-GG-U GA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -U-AGUC-CU CAU-G-GA-A AUUAC-U-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACU AUGGC-G-GU -GA--CUAUG GGA-C-G-C- GA-AAG-G(G 2881 -CGA)CCUG- ---------- GA-GCUAA-U CUCA--AAA- -GC-U-G-C- UCUGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcy.pyrifo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocystis pyriformis str. 14. ACCESSION No information KEYWORDS No information. SOURCE Methylocystis pyriformis str. 14. ORGANISM Methylocystis pyriformis. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20803 isolate_name= 14 BASE COUNT 252 a 234 c 333 g 229 t 3328 others ORIGIN 1 .......... .......... .......... ..CAAACUUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-UAA-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGU-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UUA UCCA|-GCUA UGCU-GU-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GYUU| UUUC-GC-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......UUG A-UAC-UGGA G-GUCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NUCACUG-- ---------- ---------- ---------G 1501 CCC--NN-NA CUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CN-- -------R|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUN -NNCAG-UGG 1741 CG--CC---- --G--(-AA- ---C)G-CU- UUAA-GCAUC C|U|G-CCN- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-A CG-C------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -(-------- -)---GCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------C ---CCGG-U- AUG----AUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUUCU-- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GU--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGY AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGN-NG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UU -A-AGUC-CU UAU-G-GC-U CUUAC-A-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-C-G-C- GA-AAG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-A.. 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcy.minimi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocystis minimus str. 42. ACCESSION No information KEYWORDS No information. SOURCE Methylocystis minimus str. 42. ORGANISM Methylocystis minimus. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20844 isolate_name= 42 BASE COUNT 291 a 266 c 397 g 264 t 3158 others ORIGIN 1 .......... .......... .......... ..CGAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CA (--GC----- ---------- ---------- 241 --------GA -)UG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---C -GGUU-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- ---------U 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----U--A- G--C-G---- 661 ----AAAG-- AUC---G-|G CUUGU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-CUC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GU-(GUA A)-GCC-GGA UCCA|-GCUA UGCU-GU-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-UGGG-U-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGU|G UUAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C -G-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-AUCUA-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCACUG-- ---------- ---------- ---------G 1501 CCC--NN-NA CUGACG-CUG AG-G------ -------UG- C-NNNA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUN -UUCAG-UGG 1741 C---GC---- --CG-(-AA- ---C)G-CU- UUAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-A CG-C------ ---------- ---------- ---------- 1861 ---------- ---------- ---------- ---------- -(-------- -)---GCAGA 1921 A-CCUUA-CC AGC-UU-UUG ACA-UG|--- ---------U ---CCGG-U- AUG----GUC 1981 -GUC-A--(- GAGA-)-UGA -C-UUCCU-- U--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-G---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GC)-UUGY- ---------- ---------- ---------- |--C--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---CU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-CAC-AG-G A-CU-G-CUG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 U-UG-GGG-A UG-ACG--UU -A-AGUC-CU UAU-G-GC-U CUUAC-A-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCGAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.5 RPS.VIRIDIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.5 RPS.VIRIDIS_SUBGROUP. ORGANISM 2.14.1.9.5 RPS.VIRIDIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (2), 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13948|g870816 ORS 571 (T) = LMG 6465 nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 BASE COUNT 349 a 343 c 454 g 277 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GANG |-GGGG-C-- 1201 AAG-CNUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- NUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-N-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-GCC-U(N 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11342|g464201 ORS 571 (T) = LMG 6465 nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 BASE COUNT 355 a 355 c 470 g 287 t 2909 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU--UG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAA--GGGGU G-AAA-GC-C UG--AG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Rainey,F.A. and Wiegel,J. TITLE 16S ribosomal DNA sequence analysis confirms the close relationship between the genera Xanthobacter, Azorhizobium, and Aquabacter and reveals a lack of phylogenetic coherence among Xanthobacter species JOURNAL Int. J. Syst. Bacteriol. 46, 607-610 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94200|g1313917 ORS 571 (T) = LMG 6465 nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 340 c 452 g 275 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 LMG 6465. ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 LMG 6465. ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67221 LMG 6465 = ORS 571 (T) nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 BASE COUNT 350 a 346 c 461 g 277 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUCUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans.. ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans. ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77126|g443814 BASE COUNT 210 a 196 c 270 g 160 t 3540 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU N--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-U....(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... ..A--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GG.... ........C- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azr.cauli5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ACCESSION No information KEYWORDS No information. SOURCE Azorhizobium caulinodans str. MAR 1568 ORS 571 (T). ORGANISM Azorhizobium caulinodans. REFERENCE 1 AUTHORS Van Rossum,D., Schuurmans,F.P., Gillis,M., Muyotcha,A., Van Verseveld,H.W., Stouthamer,A.H. and Boogerd,F.C. TITLE Genetic and phenetic analyses of Bradyrhizobium strains nodulating peanut (Arachis hypogaea L.) roots JOURNAL Appl. Environ. Microbiol. 61, 1599-1609 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12913|g608020 ORS 571 (T) = LMG 6465 nat_host= Sesbania rostrata from Senegal nat_host= Sesbania rostrata Brem. from Senegal nat_host= Sesbania rostrata isolate_name= MAR 1568 BASE COUNT 68 a 61 c 84 g 47 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xtb.flavus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthobacter flavus str. 301. ACCESSION No information KEYWORDS No information. SOURCE Xanthobacter flavus str. 301. ORGANISM Xanthobacter flavus. REFERENCE 1 AUTHORS Rainey,F.A. and Wiegel,J. TITLE 16S ribosomal DNA sequence analysis confirms the close relationship between the genera Xanthobacter, Azorhizobium, and Aquabacter and reveals a lack of phylogenetic coherence among Xanthobacter species JOURNAL Int. J. Syst. Bacteriol. 46, 607-610 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94199|g1314200 isolate_name= 301 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 345 a 345 c 450 g 272 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- G-A--UCU-A C-CCAA---U -GGUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUC-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCU -CUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xtb.agilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthobacter agilis str. SA35. ACCESSION No information KEYWORDS No information. SOURCE Xanthobacter agilis str. SA35. ORGANISM Xanthobacter agilis. REFERENCE 1 AUTHORS Rainey,F.A. and Wiegel,J. TITLE 16S ribosomal DNA sequence analysis confirms the close relationship between the genera Xanthobacter, Azorhizobium, and Aquabacter and reveals a lack of phylogenetic coherence among Xanthobacter species JOURNAL Int. J. Syst. Bacteriol. 46, 607-610 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94198|g1314197 isolate_name= SA35 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 345 a 343 c 452 g 274 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UCU-A C-CCAU---U -GGUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AUGG-- AUG---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GGG-C(- UC-A)A-CCU -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUC-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CCU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CUCA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GAGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xtb.tageti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthobacter tagetidis str. TagT2C. ACCESSION No information KEYWORDS No information. SOURCE Xanthobacter tagetidis str. TagT2C. ORGANISM Xanthobacter tagetidis. REFERENCE 1 AUTHORS Padden,A.N., Rainey,F.A., Kelly,D.P. and Wood,A.P. TITLE Xanthobacter tagetidis sp. nov., an organism associated with Tagetes species and able to grow on substituted thiophenes JOURNAL Int. J. Syst. Bacteriol. 47 (2), 394-401 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X99469|g2108340 isolate_name= TagT2C NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 346 a 342 c 450 g 274 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UCU-G C-CCUU---U -GGUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUG---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC G-AUCUC-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCU -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----ACU 1981 -UCC-G--(- GAGA-)-CGG -A-UUUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGA-U-G-C- AA-AAG-G(G 2881 -CGA)CCUC- ---------- UA-GCAAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aqb.spirit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aquabacter spiritensis str. SPL-1 ATCC 43981. ACCESSION No information KEYWORDS No information. SOURCE Aquabacter spiritensis str. SPL-1 ATCC 43981. ORGANISM Aquabacter spiritensis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43981 ATCC 43981 = LMG 8611 isolate_name= SPL-1 NB: name not officially recognized BASE COUNT 344 a 341 c 451 g 278 t 2962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--NN----- ---------- ---------- 241 --------UN -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGNG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- G-A--UGU-G C-CCAA---U -GGUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUC---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UC- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-ACCUA-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UNAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-N A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAAUG GGU-A-G-C- GA-AAG-G(G 2881 -CGA)CCUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 U-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A N-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xtb.autrph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthobacter autotrophicus str. 7c. ACCESSION No information KEYWORDS No information. SOURCE Xanthobacter autotrophicus str. 7c. ORGANISM Xanthobacter autotrophicus. REFERENCE 1 AUTHORS Rainey,F.A. and Wiegel,J. TITLE 16S ribosomal DNA sequence analysis confirms the close relationship between the genera Xanthobacter, Azorhizobium, and Aquabacter and reveals a lack of phylogenetic coherence among Xanthobacter species JOURNAL Int. J. Syst. Bacteriol. 46, 607-610 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94201|g1314198 isolate_name= 7c NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 348 a 344 c 448 g 272 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CA (--GC----- ---------- ---------- 241 --------AA -)UG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- G-A--UCU-A C-CCAA---U -GGUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-GC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 AAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UU- 1261 G-UU-AAG|U CAG---AGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC G-ACCUU-GA GUU-----CG A-GA-GAGGU UGG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UAG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------G ---CAGG--- ACG----AUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCUCU-- UC-------- ---CA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UG-------- ----GA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- AA-AGG-G(G 2881 -CGA)CCCC- ---------- UA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.novell 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus novellus. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus novellus. ORGANISM Thiobacillus novellus. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Phylogeny of facultatively chemolithotrophic thiobacilli with ubiquinone-10 JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32247|g514989 BASE COUNT 347 a 341 c 450 g 268 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- G-A--UCU-G C-CCAA---U -GGUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------GC 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUCA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-UC-CG 1021 --AC-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGC A-AUCUC-GA GUC-----CG G-AA-GAGGU AAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CGAG- 1441 -U-G-CC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CC---- --AC-(UAA- ---C)G-CA- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------U ---CUCGG-- AAU----UGG 1981 -ACC-A--(- GAGA-)-UGG -A-CCAAG-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CGG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-A C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-U-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- NA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anc.aquati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ancylobacter aquaticus. ACCESSION No information KEYWORDS No information. SOURCE Ancylobacter aquaticus. ORGANISM Ancylobacter aquaticus. REFERENCE 1 AUTHORS Woese,C.R., Maloy,S., Mandelco,L. and Raj,H.B. TITLE Phylogenetic placement of the Spirosomaceae JOURNAL Syst. Appl. Microbiol. 13, 19-23 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62790 ATCC 25396 = DSM 101 (T) BASE COUNT 348 a 338 c 456 g 278 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- GGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- G-A--UCU-G C-CNAA---U -GGUA-C-GG 421 -AAU-AA-UU U--------- ------CG-- G(-GAAA-)C -UGGG-A--C UNAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------GC 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --AC-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGG U-AUCUC-GA GUC-----CG G-AA-GAGGU AAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CU-UUG ACA-UG|--- ---------U ---CCCGG-- ACG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| CGG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCAAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UNG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE11 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26263|g498381 library_source= unidentified soil bacterium from soybean field BASE COUNT 64 a 71 c 83 g 56 t 4102 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CC-G-CCG --GC(-GA-C AA)-GC--G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-CAC-G(C 2881 -GAG)UGUA- ---------- UU-GCGAA-U CCCA--AAAA -AC-C-GUC- CCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GGGUGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(AC -AGC-AG)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68474 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 245 a 263 c 356 g 211 t 3301 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- U-A--UCU-A U-CCUC---G -GGUG-G-GG 421 -GAC-AA-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GAC-(-- --------UG 541 AG-------- -)-GUC---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----GGGG-- AGG---A-|C GGUGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UC- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCCC| UUUC-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAG A-AGCUU-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GU-UU CUGACG-CUC AG-G------ -------CG- C-GACA-NN- NU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCGA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -CU----CAC 1981 -UCC-A--(- GAGA-)-UGG -A-GCUUC-- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-C....... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1099 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1099. str. SBR1099. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1099. str. SBR1099. ORGANISM str. SBR1099. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84527|g871648 isolate_name= SBR1099 BASE COUNT 85 a 89 c 132 g 65 t 4005 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUG---A -GGUU-G-GG 421 -AAU-AA-CU G--------- ------CG-- G(-GAAA-)C -UGCA-G--C UAAUACC-UG 481 AU-GCG---- ---------- ---------- ---------- --CCCC-(-- --------GA 541 GA-------- -)-GGGG--- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UGGG-- AGC---G-|G CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GNCA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bl.slfvird 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastochloris sulfoviridis. ACCESSION No information KEYWORDS No information. SOURCE Blastochloris sulfoviridis. ORGANISM Blastochloris sulfoviridis. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Transfer of the bacteriochlorophyll b-containing phototrophic bacteria Rhodopseudomonas viridis and Rhodopseudomonas sulfoviridis to the genus Blastochloris gen. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 217-219 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D86514|g1483161 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 335 a 347 c 459 g 267 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CCC---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCUA---A -GGUA-C-GG 421 -AAC-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UAGG-- AGC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UC- 1261 G-UU-AAG|U CGG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUCG A-UAC-UGGC G-AUCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-CUCUU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCCU- ---------- AA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 A-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-UC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.virid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas viridis str. F. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas viridis str. F. ORGANISM Rhodopseudomonas viridis. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14430|g633108 isolate_name= F BASE COUNT 310 a 313 c 424 g 259 t 3070 others ORIGIN 1 .......... .......... .......... ...NNNCNUN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UGU-G C-CCUU---U -GGUA-C-GG 421 -AAC-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UUGG-- AGC---A-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UC- 1261 G-UU-AAG|U CGG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUCG A-UAC-UGGC G-ACCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)N ---------- ---------- ---------- -------CUC -AUGAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CU- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UCUUNG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -CCC-A--(- GAGA-)-UGG -G-NUCUU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N N-)------- ---------- -----A---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCCU- ---------- GA-GCUAA-U CUCCA-AAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -NGC-AU)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.virid3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas viridis. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas viridis. ORGANISM Rhodopseudomonas viridis. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 665-673 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25314|g529074 BASE COUNT 332 a 351 c 462 g 263 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CCC---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UGU-G C-CCAA---A -GGUA-C-GG 421 -AAC-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UUGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UC- 1261 G-UU-AAG|U CGG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUCG A-UAC-UGGC G-ACCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UNAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --CC-(UAA- ---C)G-CN- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -CCC-A--(- GAGA-)-UGG -G-AUCUU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCCU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.viridi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas viridis. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas viridis. ORGANISM Rhodopseudomonas viridis. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 665-673 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25314|g529074 BASE COUNT 332 a 351 c 461 g 263 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CCC---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UGU-G C-CCAA---A -GGUA-C-GG 421 -AAC-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UUGG-- AGC---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GA-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UC- 1261 G-UU-AAG|U CGG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUCG A-UAC-UGGC G-ACCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UNAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--GG-CU-- -------A|G -CC-GU-UGG -UG-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --CC-(UAA- ---C)G-CN- UUAA-GCCUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -CCC-A--(- GAGA-)-UGG -G-AUCUU-- UC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GA---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCCU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2035 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2035. str. SBR2035. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2035. str. SBR2035. ORGANISM str. SBR2035. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84574|g871695 isolate_name= SBR2035 BASE COUNT 88 a 85 c 122 g 71 t 4010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGG-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---C -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GC 541 AA-------- -)-GGA---- ---------- ---GUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUNUU G-GCCAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUUC-GC-GU 961 G-A-GU-G-N U-GAU--G-G CC(--UU-AG --)NG-UUGU AUN--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65577|g556793 BASE COUNT 67 a 56 c 74 g 42 t 4137 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 AA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65581|g556799 BASE COUNT 67 a 56 c 74 g 42 t 4137 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---C -GGUU-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 AA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2082 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2082. str. SBR2082. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2082. str. SBR2082. ORGANISM str. SBR2082. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84612|g871733 isolate_name= SBR2082 BASE COUNT 93 a 86 c 122 g 64 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CUUU---C -AGUU-C-GG 421 -AAC-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------GU 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUCA--- ---)------ ---------| -----U--C- G--CUG---- 661 ----AGAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G NC(--UU-AG --)GG-UUGU AAA--GUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC34 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MC. ACCESSION No information KEYWORDS No information. SOURCE clone MC. ORGANISM clone MC. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Unculturable microbes detected by molecular sequences and probes JOURNAL Biodiv. and Conserv. 1, 250-262 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65571|g556798 BASE COUNT 82 a 78 c 109 g 55 t 4052 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-N|C-UC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AA.... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2093 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2093. str. SBR2093. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2093. str. SBR2093. ORGANISM str. SBR2093. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84623|g871744 isolate_name= SBR2093 BASE COUNT 108 a 81 c 114 g 80 t 3993 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-AAGG 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACA- C-AA-CAU-A C-CAUA---U -ACUG-G-GG 421 -UAU-AG-CU U--------- ------NG-- G(-GAAA-)C -UGAA-G--G UAAUCCC-CC 481 AU-AAC---- ---------- -------A-U UG-C-----G AG-AGG-(-- --------GC 541 A--------- -)-UCU-GA- UU-GC----A AU--UAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAUG-- AUU---G-|G UGUGC----- -GU|----UU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AA 781 U-AG-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GAA A)-CUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-UA-G-A U-GAA--G-G CC(--CUCUG --)GG-UUGU AAA--UAUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2094 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2094. str. SBR2094. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2094. str. SBR2094. ORGANISM str. SBR2094. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84624|g871745 isolate_name= SBR2094 BASE COUNT 107 a 82 c 115 g 79 t 3993 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGC-A -GGC-UN--A AUAC-AUGCA A-GUC-AAGG 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ -CCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUACA- CAA--CAU-G C-CAUA---U -ACUG-G-GG 421 -UAU-AG-CU U--------- ------UG-- G(-GAAA-)C -UGAA-G--G UAAUCCC-CC 481 AU-AAC---- ---------- ---------- ---------- ---AUU-(-- --------GC 541 GA-------- -)GAGG---- ---------- ----GCAU-- ---CUG---- ----AUU--- 601 --(------- -GCAAUUAA- ---)------ ----AGU--| -UUCGA--C- G--GUA---- 661 ----UAUG-- AUU---G-|G UGUGC----- -GU|----UU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AA 781 U-AG-C-UG| -G-CGU--(G -AGA)-GCGC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-UA-G-A U-GAA--G-G CC(--CUCUG --)GG-UUGU AAA--UAUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.IL245 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. IL-245. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. IL-245. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D15063|g633103 isolate_name= IL-245 BASE COUNT 325 a 322 c 422 g 248 t 3059 others ORIGIN 1 .......... .......... .......... ....AACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---C -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------GC 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-CU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-AGCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -NN-NU-UGG -CG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -GUCAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-CUCCU-- CC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--CUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCCU- ---------- UA-GCAAA-U CUCA--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.ANTP1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. ANT-P-1. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. ANT-P-1. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14428|g633097 isolate_name= ANT-P-1 BASE COUNT 314 a 309 c 411 g 244 t 3098 others ORIGIN 1 .......... .......... .......... ...CAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-G C-CUUU---C -GGUU-C-GG 421 -AAC-AA-CU G--------- ------AG-- G(-GAAA-)C -UUCA-G--C UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------GC 541 AA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-CU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-AGCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -NN-NU-UGG -CG-AG---- ---------- 1681 -(-CU-UG)N ---------- ---------- ---------- -------CUC -GUCAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CCUUNG ACA-UG|--- ---------C ---CACG--- A..----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-CC--CUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U NA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGN-N-N-C- GA-AGG-G(G 2881 -UNN)UUCU- ---------- UA-GCAAA-U CUCA-AAAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhp.elegan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoplanes elegans str. AS130. ACCESSION No information KEYWORDS No information. SOURCE Rhodoplanes elegans str. AS130. ORGANISM Rhodoplanes elegans. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 665-673 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25311|g435463 isolate_name= AS130 BASE COUNT 331 a 355 c 461 g 259 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCC-(-- --------GC 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-GG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-CU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG A-GGCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -CG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -GUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -UCC-G--(- GAGA-)-CGG -A-CUCCU-- CC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-G(G 2881 -UGA)CCCU- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCU -GAA-G-GCG 3121 U-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhp.roseu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoplanes roseus str. 941 DSM 5909 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodoplanes roseus str. 941 DSM 5909 (T). ORGANISM Rhodoplanes roseus. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 5909 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14429|g633101 Former RDP Sids: Rps.rosea isolate_name= 941 NB: former name Rhodopseudomonas rosea BASE COUNT 318 a 308 c 413 g 245 t 3092 others ORIGIN 1 .......... .......... .......... ...NAACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCC-(-- --------GC 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- C--CGG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGA G-AGCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UN)N N--------- ---------- ---------- --------UG -CUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UCUUNG ACA-UG|--- ---------C ---CACG--- A..----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CANUG GGA-A-G-C- GA-AGG-G(G 2881 -CAA)CCCU- ---------- UA-GCAAA-U CUCA-AAAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhp.roseus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoplanes roseus str. 941. ACCESSION No information KEYWORDS No information. SOURCE Rhodoplanes roseus str. 941. ORGANISM Rhodoplanes roseus. REFERENCE 1 AUTHORS Hiraishi,A. and Ueda,Y. TITLE Rhodoplanes gen. nov., a new genus of phototrophic bacteria including Rhodopseudomonas rosea as Rhodoplanes roseus comb. nov. and Rhodoplanes elegans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 665-673 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25313|g435464 isolate_name= 941 BASE COUNT 339 a 354 c 458 g 261 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CGU-A C-CCUU---U -GGUU-C-GG 421 -AAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---UCC-(-- --------GC 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 U-CU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGGA G-AGCUC-GA GUC-----CG G-GA-GAGGU GAG-U|GGAA 1381 CU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -CUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CN- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CACG--- ACG----GUU 1981 -UCC-G--(- GAGA-)-CGG -A-CUCCU-- CC-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----GG---| CGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-C-G-C- GA-AGG-G(G 2881 -CAA)CCCU- ---------- UA-GCAAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCU -GAA-G-GCG 3121 C-UGC-G-CU -AA-CUCA-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GAGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD54 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26241|g498445 library_source= unidentified soil bacterium from paddy field BASE COUNT 62 a 69 c 84 g 60 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-U-G-C- AA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -UC-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCG-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD53 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26240|g498444 library_source= unidentified soil bacterium from paddy field BASE COUNT 62 a 69 c 83 g 61 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGAG GGA-U-G-C- AA-AGG-G(G 2881 -CGA)CCCU- ---------- UC-GCAAA-U CUCA--AAAA -UC-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-UGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.6 RM.VANNIELII_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.6 RM.VANNIELII_ASSEMBLAGE. ORGANISM 2.14.1.9.6 RM.VANNIELII_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE43 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-43. str. E-43. ACCESSION No information KEYWORDS No information. SOURCE str. E-43. str. E-43. ORGANISM str. E-43. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58344|g1718220 biol_source= lignin enrichment culture isolate_name= E-43 BASE COUNT 64 a 76 c 94 g 64 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.AGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGU-CC-UUG ACA-UU|--- ---------U ---GGUGC-- A------UUU 1981 -UCC-A--(- GAGA-)-UGG -A-AA-UU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--A| CGC-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GAG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--NUACA AUGGC-G-GU -GA--CAGUG GNC-A-G-C- GA--AC..(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligL85 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. L-85. str. L-85. ACCESSION No information KEYWORDS No information. SOURCE str. L-85. str. L-85. ORGANISM str. L-85. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58350|g1718226 biol_source= lignin enrichment culture isolate_name= L-85 BASE COUNT 62 a 78 c 95 g 64 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... ..UAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UU|--- ---------U ---GGUGC-- A------CUU 1981 -UCC-A--(- GAGA-)-UGG -A--AGUU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GN -GA--CAGUG GGC....... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.liEE34 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EE-34. str. EE-34. ACCESSION No information KEYWORDS No information. SOURCE str. EE-34. str. EE-34. ORGANISM str. EE-34. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58347|g1718223 biol_source= lignin enrichment culture isolate_name= EE-34 BASE COUNT 61 a 76 c 95 g 67 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... ..UAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UU|--- ---------U ---GGUGC-- -AC-----UU 1981 -UCC-A--(- GAGA-)-UGG -A-UU-UU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC....... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rm.vanniel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodomicrobium vannielii str. EY33 ATCC 51194. ACCESSION No information KEYWORDS No information. SOURCE Rhodomicrobium vannielii str. EY33 ATCC 51194. ORGANISM Rhodomicrobium vannielii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51194 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34127 isolate_name= EY33 BASE COUNT 343 a 343 c 433 g 292 t 2965 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CAAAAUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-U C-CCUU---U -GGUA-C-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GU 481 AU-AUC---- ---------- ---------- ---------- ---UCC-(-- --------UC 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GA-UU- 1261 G-AU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGUC U-GUCUC-GA GUU-----CG G-GA-GAGGU UGG-C|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GNNG- -CCAACUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUC -UUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-UC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------U ---CGUG--- -CU----ACG 1981 -UGG-A--(- GAGA-)-UUC -A-CGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GN-N A-CC-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CCCA--AAAA -GC-C-GUC- UCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 U-NAN-G-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2054 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2054. str. SBR2054. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2054. str. SBR2054. ORGANISM str. SBR2054. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84590|g871711 isolate_name= SBR2054 BASE COUNT 94 a 85 c 120 g 71 t 4006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA G-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-U C-CUAG---G -GGUA-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GU 541 GG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----UUAG-- ACG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-CG 781 U-AG-C-UG| -A-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1098 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1098. str. SBR1098. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1098. str. SBR1098. ORGANISM str. SBR1098. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84526|g871647 isolate_name= SBR1098 BASE COUNT 96 a 83 c 119 g 71 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGN-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--CCU-U C-CUAG---G -GGUA-C-GG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GU 541 GA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCC---- 661 ----UUAG-- ACG---G-|G CCCGC----- -GU|----CG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-CG 781 U-AG-C-UG| -A-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.7 PEDOMICROBIUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.7 PEDOMICROBIUM_ASSEMBLAGE. ORGANISM 2.14.1.9.7 PEDOMICROBIUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pdmb.austr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pedomicrobium australicum. ACCESSION No information KEYWORDS No information. SOURCE Pedomicrobium australicum. ORGANISM Pedomicrobium australicum. REFERENCE 1 AUTHORS Cox,T.L. and Sly,L.I. TITLE Phylogenetic relationships and uncertain taxonomy of Pedomicrobium species JOURNAL Int. J. Syst. Bacteriol. 47 (2), 377-380 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97693|g1314051 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 354 a 352 c 466 g 282 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-A C-CUUA---C -GGUC-G-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--G UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UG- 1261 U-GU-CAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-AACA C-GUCUU-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GG---| UCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C CU-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- CA-CCC-A(G 2881 -CGA)UGGG- ---------- CA-GCUAA-U CCCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pdmb.ameri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pedomicrobium americanum. ACCESSION No information KEYWORDS No information. SOURCE Pedomicrobium americanum. ORGANISM Pedomicrobium americanum. REFERENCE 1 AUTHORS Cox,T.L. and Sly,L.I. TITLE Phylogenetic relationships and uncertain taxonomy of Pedomicrobium species JOURNAL Int. J. Syst. Bacteriol. 47 (2), 377-380 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97692|g1314050 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 354 a 355 c 463 g 281 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-NCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-A C-CUUA---C -GGUC-G-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--G UAAUACC-GG 481 AU-ACC---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GNC-GA- CGA------- -----UC-CU 781 U-AN-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UG- 1261 U-GC-CAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -UGCC-CUUG A-UAC-AGCA C-GUCUU-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-NCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|C-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GG---| UCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C CU-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- CA-CCC-A(G 2881 -CGA)UGGG- ---------- CA-GCUAA-U CCCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACC~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pdmb.ferrg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pedomicrobium ferrugineum. ACCESSION No information KEYWORDS No information. SOURCE Pedomicrobium ferrugineum. ORGANISM Pedomicrobium ferrugineum. REFERENCE 1 AUTHORS Cox,T.L. and Sly,L.I. TITLE Phylogenetic relationships and uncertain taxonomy of Pedomicrobium species JOURNAL Int. J. Syst. Bacteriol. 47 (2), 377-380 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97690|g1314053 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 356 a 355 c 459 g 287 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AAC -GAAC-UC-- UGNC-GGC-A -GGC-CU--A ACAC-AUNCA A-GUC-GAAC 121 C--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (---C----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-A C-CUUA---C -GGUC-G-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--G UAAUACC-GG 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----UUAG-- AUG---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAAU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-GU-CAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-AGCA U-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GG---| UCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C CU-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- CA-CCC-A(G 2881 -CGA)UGGG- ---------- CA-GCUAA-U CCCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AUGUC- GUAA-CAANG UAGCC-NUAG G(GGA-A)CC UGCGGU--UN GAUCACCUCC 3361 UUNA|C.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pdmb.mangn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pedomicrobium manganicum. ACCESSION No information KEYWORDS No information. SOURCE Pedomicrobium manganicum. ORGANISM Pedomicrobium manganicum. REFERENCE 1 AUTHORS Cox,T.L. and Sly,L.I. TITLE Phylogenetic relationships and uncertain taxonomy of Pedomicrobium species JOURNAL Int. J. Syst. Bacteriol. 47 (2), 377-380 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97691|g1314054 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 356 a 353 c 472 g 283 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGAC-GAC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CA (--GC----- ---------- ---------- 241 --------AA -)UG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-U C-CCUA---U -GGUU-C-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -CUGG-G--G UAAUACC-GG 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-UAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC A-AUCUC-GA GUC-----CG A-UA-GAGGU GGG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-NCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GCCACUG-- ---------- ---------- ---------G 1501 AUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-CAG -CA-AG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CUU -GUUGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- ACG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- UA-------- ----GG---| UCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- CA-CCC-A(G 2881 -CGA)UGGG- ---------- GA-GCUAA-U CACA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGA--UG GAUCAACC.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1100 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1100. str. SBR1100. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1100. str. SBR1100. ORGANISM str. SBR1100. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84528|g871649 isolate_name= SBR1100 BASE COUNT 100 a 82 c 121 g 65 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGG-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CCC---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GGG--- AGUG-GCAG- 361 -A-CG-GG-A GAGU---AAC -AC-GUGGG- A-A--CCU-U C-CCUA---U -AGUA-C-GG 421 -AAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--G UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Hyp353 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. US-353. str. US-353. ACCESSION No information KEYWORDS No information. SOURCE str. US-353. str. US-353. ORGANISM str. US-353. REFERENCE 1 AUTHORS van Greune,C.H., Engelbrecht,S., Becker,W.B. and Becker,M.L . TITLE A Hyphomicrobium-like organism (HLO) causing persistent, surreptitious cell culture contamination JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06473|g468060 legacy_attribute= lab_host=African green monkey, kidney (CV-1 ) cells isolate_name= US-353 BASE COUNT 353 a 341 c 448 g 293 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-U C-CUAU---C -GGUA-C-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--G UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AUAG-- AUG---A-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 C-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGAC A-GUCUU-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCUUGU- GUA-UAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACU-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UU-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----G-UA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--UG-CU-- -------A|G -CC-GU-CGG -NA-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CU- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-N UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CNAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------U ---ACGG--- ACC----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCAU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AN A-)------- UA-------- ----GG---| CCG-UA-GGA |---C|A--G 2161 GU-GC-UGCG UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCU-GG -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGC-A-G-C- AA-CAC-A(G 2881 -CAA)UGUG- ---------- AA-GCUAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hyp.vulgar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hyphomicrobium vulgare str. MC-750 ATCC 27500. ACCESSION No information KEYWORDS No information. SOURCE Hyphomicrobium vulgare str. MC-750 ATCC 27500. ORGANISM Hyphomicrobium vulgare. REFERENCE 1 AUTHORS Stackebrandt,E., Fischer,A., Roggentin,T., Wehmeyer,U., Bomar,D. and Smida,J. TITLE A phylogenetic survey of budding, and/or prosthecate, non-phototrophic eubacteria: membership of Hyphomicrobium, Hyphomonas, Pedomicrobium, Filomicrobium, Caulobacter and Dichotomicrobium to the alpha-subdivision of purple non-sulfur bacteria JOURNAL Arch. Microbiol. 149, 547-556 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27500 isolate_name= MC-750 NB: old DeWachter seq 83 (GB has updated X53182) and the new GB entry is a WORSE sequence (X53182 Hyp.vulga2) BASE COUNT 332 a 331 c 437 g 278 t 2998 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--C------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--AGC---- ---------- ---------- 241 -------ACA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---CAC -CC-GUGGG- A-A--UCU-U C-CUAU---C -GGUA-C-GG 421 -AAU-AG-CU C--------- ------AG-- G(-GAAA-)C -UUGG-G--G UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AUAG-- AUG---A-|G CCCGC----- -GU|----UN G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(C -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UUUU-GC-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-N-GA G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCGGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGCC A-GUCUC-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 NCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--UG-CU-- -------A|G -CA-GU-CGG -CA-AG---- ---------- 1681 -(-CU-NN)- ---------- ---------- ---------- -------CUN -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---ACUG--- AUC----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCAU-- CC-------- ---UA----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AC A-)------- UA-------- ----GG---| CAG-UG-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GG-G A-CU-G-CCG --GU(-GA-U GA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGC-A-G-C- AA-CUC-A(G 2881 -CAA)UGGG- ---------- AA-GCUAA-U CUCA--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGGGCUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GCA-(UC -AGC-AU)-G GCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-NAG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.liEE12 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EE-12. str. EE-12. ACCESSION No information KEYWORDS No information. SOURCE str. EE-12. str. EE-12. ORGANISM str. EE-12. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58346|g1718222 biol_source= lignin enrichment culture isolate_name= EE-12 BASE COUNT 65 a 72 c 90 g 72 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .....U-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UG|--- ---------C ---CAGG--- ACG----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-UUUCU-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CA... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.8 RHB.LEGUMINOSARUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.8 RHB.LEGUMINOSARUM_SUBGROUP. ORGANISM 2.14.1.9.8 RHB.LEGUMINOSARUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2386 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2386.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2386.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2386.Rhizobium isolate BASE COUNT 67 a 61 c 82 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A N|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp7104 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 7104.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 7104.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 7104.Rhizobium isolate BASE COUNT 68 a 61 c 82 g 50 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1146 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam1146.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam1146.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam1146.Rhizobium isolate BASE COUNT 68 a 61 c 81 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2061 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2061.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2061.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2061.Rhizobium isolate BASE COUNT 67 a 60 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2163 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2163.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2163.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2163.Rhizobium isolate BASE COUNT 69 a 61 c 84 g 50 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--- GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2235 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2235.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2235.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2235.Rhizobium isolate BASE COUNT 69 a 61 c 85 g 50 t 4111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.2m16_4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2m16+4.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2m16+4.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2m16+4.Rhizobium isolate BASE COUNT 69 a 61 c 85 g 50 t 4111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2370 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2370.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2370.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2370.Rhizobium isolate BASE COUNT 70 a 62 c 85 g 50 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-NA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-A.. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. 162Y10. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. 162Y10. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Genotypic characterization of rhizobium JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55239 isolate_name= 162Y10 BASE COUNT 69 a 58 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. 162K13. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. 162K13. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Genotypic characterization of rhizobium JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55238 isolate_name= 162K13 BASE COUNT 69 a 58 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55494 legacy_attribute= biovar:phaseoli BASE COUNT 69 a 58 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67227 LMG 8820 = ATCC 14480 nat_host= Trifolium pratens common_name= alpha purple bacterium BASE COUNT 353 a 338 c 458 g 282 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGANG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CN .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1125 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam1125.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam1125.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam1125.Rhizobium isolate BASE COUNT 67 a 59 c 84 g 49 t 4117 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GA........ .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legK10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. 162K10. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. 162K10. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Genotypic characterization of rhizobium JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55237 isolate_name= 162K10 BASE COUNT 69 a 58 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Drouin,P., Prevost,D. and Antoun,H. TITLE Characteristics of rhizobia isolated from Lathyrus species living in northern Quebec areas: Lathyrus japonicus (Hudson's Bay) and Lathyrus pratensis (Abitibi) JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08101|g472838 BASE COUNT 67 a 59 c 84 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-G--UCU-C C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Drouin,P., Prevost,D. and Antoun,H. TITLE Characteristics of rhizobia isolated from Lathyrus species living in northern Quebec areas: Lathyrus japonicus (Hudson's Bay) and Lathyrus pratensis (Abitibi) JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08100|g472837 BASE COUNT 69 a 58 c 83 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS van Berkum,P.B., Beyene,D. and Eardly,B.D. TITLE Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.) JOURNAL Int. J. Syst. Bacteriol. 46, 240-244 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29386|g902059 USDA 2370 (T) = ATCC 10004 legacy_attribute= biovar:viciae geog_source= Illinois BASE COUNT 353 a 338 c 451 g 281 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GCC(CCA A)-GCC-UGA UCCA|-ACCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G CCC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. RCR 3644 USDA 2671. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. RCR 3644 USDA 2671. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS van Berkum,P.B., Beyene,D. and Eardly,B.D. TITLE Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.) JOURNAL Int. J. Syst. Bacteriol. 46, 240-244 (1996) STANDARD No information COMMENTS Organism information Culture collection: USDA 2671 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29388|g902061 legacy_attribute= biovar:phaseoli geog_source= England isolate_name= RCR 3644 BASE COUNT 355 a 349 c 462 g 292 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(CCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCACC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-U-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUUAG UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UGGACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3618 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. RCR 3618D USDA 2947. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. RCR 3618D USDA 2947. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS van Berkum,P.B., Beyene,D. and Eardly,B.D. TITLE Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.) JOURNAL Int. J. Syst. Bacteriol. 46, 240-244 (1996) STANDARD No information COMMENTS Organism information Culture collection: USDA 2947 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29387|g902060 isolate_name= RCR 3618D BASE COUNT 358 a 344 c 461 g 290 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)CGGCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(CCA A)-GCC-UGA UCCA|-ACCA UGCC-GC-GU 961 G-A-GU-G-A U-GGAA-G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACC--UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.etl244 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium etli str. CFN-244. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium etli str. CFN-244. ORGANISM Rhizobium etli. REFERENCE 1 AUTHORS Segovia,L., Young,J.P.W. and Martinez-Romero,E. TITLE Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 374-377 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20763 isolate_name= CFN-244 BASE COUNT 54 a 45 c 70 g 45 t 4162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GC.. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb._NM095 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. NM095.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. NM095.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= NM095.Rhizobium isolate BASE COUNT 66 a 62 c 84 g 49 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb._19351 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. Sh19351.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. Sh19351.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= Sh19351.Rhizobium isolate BASE COUNT 66 a 62 c 84 g 49 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-NA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legL27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. FL 27. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. FL 27. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55234 legacy_attribute= biovar:phaseoli isolate_name= FL 27 BASE COUNT 67 a 59 c 85 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spR602 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. R602. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. R602. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Laguerre,G., Fernandez,M.P., Edel,V., Normand,P. and Amarger ,N. TITLE Genomic heterogeneity among French Rhizobium strains isolated from Phaseolus vulgaris L. JOURNAL Int. J. Syst. Bacteriol. 43, 761-767 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L12053 isolate_name= R602 BASE COUNT 63 a 54 c 80 g 49 t 4130 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CU....... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1005 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1005. str. SBR1005. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1005. str. SBR1005. ORGANISM str. SBR1005. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84452|g871573 isolate_name= SBR1005 BASE COUNT 92 a 83 c 120 g 70 t 4011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. type 1 LMG 8819. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. type 1 LMG 8819. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77122|g443962 LMG 8819 = ATCC 14482 nat_host= Phaseolus sp. isolate_name= type 1 BASE COUNT 243 a 229 c 317 g 193 t 3394 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AANG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U.. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... ...A-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GG... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spOK50 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. OK-50. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. OK-50. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14515|g537401 isolate_name= OK-50 BASE COUNT 361 a 345 c 472 g 296 t 2902 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCU-(-- ---------U 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGA--- UU-------- ----A----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GGC-C(G 2881 -CGA)GGCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium radiobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14513|g757511 BASE COUNT 361 a 348 c 468 g 294 t 2905 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-AAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12782 BASE COUNT 352 a 338 c 455 g 282 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUNU- ---------- NA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UNC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.etl265 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium etli str. CFN-265. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium etli str. CFN-265. ORGANISM Rhizobium etli. REFERENCE 1 AUTHORS Segovia,L., Young,J.P.W. and Martinez-Romero,E. TITLE Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 374-377 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20762 isolate_name= CFN-265 BASE COUNT 51 a 41 c 67 g 45 t 4172 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- GUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUG..... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.etl182 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium etli str. TAL 182 USDA 9041. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium etli str. TAL 182 USDA 9041. ORGANISM Rhizobium etli. REFERENCE 1 AUTHORS van Berkum,P.B., Beyene,D. and Eardly,B.D. TITLE Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.) JOURNAL Int. J. Syst. Bacteriol. 46, 240-244 (1996) STANDARD No information COMMENTS Organism information Culture collection: USDA 9041 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28939|g899453 geog_source= Hawaii isolate_name= TAL 182 BASE COUNT 351 a 342 c 461 g 283 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(CCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CC-G- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|C -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- U------ACU 1981 -UGC-A--(- GAGA-)-UGC -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.etli42 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium etli. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium etli. ORGANISM Rhizobium etli. REFERENCE 1 AUTHORS van Berkum,P.B., Beyene,D. and Eardly,B.D. TITLE Phylogenetic relationships among Rhizobium species nodulating the common bean (Phaseolus vulgaris L.) JOURNAL Int. J. Syst. Bacteriol. 46, 240-244 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28916|g899446 CFN 42 = USDA 9032 (T) geog_source= Mexico BASE COUNT 353 a 350 c 467 g 290 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAC-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(CCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UUGACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG-C- G------ACC 1981 -UGC-A--(- GAGA-)-UGC -A-GGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legOli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. Olivia 4. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. Olivia 4. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55235 legacy_attribute= biovar:phaseoli isolate_name= Olivia 4 BASE COUNT 68 a 58 c 84 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. 162Y13. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. 162Y13. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Genotypic characterization of rhizobium JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55240 isolate_name= 162Y13 BASE COUNT 68 a 58 c 84 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2223 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2223,Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2223,Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2223,Rhizobium isolate BASE COUNT 67 a 61 c 84 g 50 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legumi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Segovia,L., Pinero,D., Palacios,R. and Martinez-Romero,E. TITLE Genetic structure of a soil population of nonsymbiotic Rhizobium leguminosarum JOURNAL Appl. Environ. Microbiol. 57, 426-433 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63183 BASE COUNT 76 a 88 c 115 g 77 t 4020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----..C 1981 -UGC-A--(- GAGA-)-UGC -A-GGGG--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CCG-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G C......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.leg191 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. Or191. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. Or191. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55236 legacy_attribute= biovar:(Medicago) isolate_name= Or191 BASE COUNT 68 a 58 c 84 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.etli80 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium etli str. CLI-80. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium etli str. CLI-80. ORGANISM Rhizobium etli. REFERENCE 1 AUTHORS Segovia,L., Young,J.P.W. and Martinez-Romero,E. TITLE Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 374-377 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20764 isolate_name= CLI-80 BASE COUNT 56 a 44 c 70 g 46 t 4160 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C AC.)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.9 RHB.TROPICI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.9 RHB.TROPICI_SUBGROUP. ORGANISM 2.14.1.9.9 RHB.TROPICI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.rhizogn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium rhizogenes. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium rhizogenes. ORGANISM Agrobacterium rhizogenes. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67224 BASE COUNT 353 a 332 c 459 g 286 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CGU-A--(- GAGA-)-UAU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.rhizog2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium rhizogenes. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium rhizogenes. ORGANISM Agrobacterium rhizogenes. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12788 BASE COUNT 353 a 333 c 457 g 286 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CGU-A--(- GAGA-)-UAU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUNU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUN- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UNC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens str. Ch-Ag-4. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens str. Ch-Ag-4. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14505|g464139 isolate_name= Ch-Ag-4 BASE COUNT 357 a 345 c 465 g 297 t 2912 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CGU-A--(- GAGA-)-UAU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14501|g464142 legacy_attribute= biovar 2 BASE COUNT 357 a 346 c 465 g 296 t 2912 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CGU-A--(- GAGA-)-UAU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp0020 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. BR 8802 LMG 10020. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. BR 8802 LMG 10020. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77124|g443964 nat_host= Gliricidia sepium from Brazil isolate_name= BR 8802 BASE COUNT 233 a 220 c 304 g 197 t 3422 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .).....UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGNU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(.. .....).... ......AU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CAG-A--(- GAGA-)-UUU -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici str. IIA USDA 2840. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici str. IIA USDA 2840. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS van Berkum,P.B., Navarro,R.B. and Vargas,A.A. TITLE Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici JOURNAL Appl. Environ. Microbiol. 60, 554-561 (1994) STANDARD No information COMMENTS Organism information Culture collection: USDA 2840 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20697 legacy_attribute= biovar:Hup+ strain isolate_name= IIA BASE COUNT 92 a 71 c 98 g 72 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC---CC UCC--UUC-A AGC-AAGCUU -GAAG-GAUU UA-------- ---------- 181 ---------- ---------- -CUCCUU-GG (--AAAA--- ---------- ---------- 241 -----GAAGA -)UC-AA-GA G--------- ---------- ---------- ---------- 301 ---------C G-CUUC-UAA G-AAGCUU-U CUU-AGAU-G GAG|GGG--- AGC--GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UC--(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -GCUCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici str. IIA USDA 9039. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici str. IIA USDA 9039. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS van Berkum,P.B., Navarro,R.B. and Vargas,A.A. TITLE Classification of the uptake hydrogenase-positive (Hup+) bean rhizobia as Rhizobium tropici JOURNAL Appl. Environ. Microbiol. 60, 554-561 (1994) STANDARD No information COMMENTS Organism information Culture collection: USDA 9039 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L21837 USDA 9039 = LMG 9517 = CFN 299 nat_host= Phaseolus vulgaris isolate_name= IIA BASE COUNT 92 a 71 c 98 g 72 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC---CC UCC--UUC-A AGC-AAGCUU -GAAG-GAUU UA-------- ---------- 181 ---------- ---------- -CUCCUU-GG (--AAAA--- ---------- ---------- 241 -----GAAGA -)UC-AA-GA G--------- ---------- ---------- ---------- 301 ---------C G-CUUC-UAA G-AAGCUU-U CUU-AGAU-G GAG|GGG--- AGC--GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UC--(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -GCUCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legu15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Young,J.P.W. and Downer,H.L. TITLE An intervening sequence in the 16S rRNA genes of some strains of Rhizobium leguminosarum JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09271|g487396 BASE COUNT 92 a 69 c 99 g 73 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC---CC UCC--UUC-A AGC-AAGCUU -GAAG-AUUU UUA------- ---------- 181 ---------- ---------- --UCCUU-GG (--AAAG--- ---------- ---------- 241 -----GAAGA -)UC-AA-GA ---------- ---------- ---------- ---------- 301 -------AGA G-CUUC-UAA G-AAGCUU-U CUU--GAU-G GAG|GGG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---G -ACUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77127|g443966 BASE COUNT 233 a 193 c 279 g 186 t 3485 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC---CC UCC--UUC-A AGC-AAGCUU -GAAG-GAUU UA-------- ---------- 181 ---------- ---------- -CUCCUU-GG (--AAAA--- ---------- ---------- 241 -----GAAGA -)UC-AA-GA G--------- ---------- ---------- ---------- 301 ---------C G-CUUC-UAA G-AAGCUU-U CUU--GAU-G GAG|GGG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .C-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-NN- -NG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -ACU-A--(- GAGA-)-UAG -U-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici str. IIA LMG 9517. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici str. IIA LMG 9517. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67234 LMG 9517 = CFN 299 = USDA 9039 nat_host= Phaseolus vulgaris isolate_name= IIA BASE COUNT 376 a 346 c 474 g 308 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC---CC UCC--UUC-A AGC-AAGCUU -GAAG-GAUU UA-------- ---------- 181 ---------- ---------- -CUCCUU-GG (--AAAA--- ---------- ---------- 241 -----GAAGA -)UC-AA-GA G--------- ---------- ---------- ---------- 301 ---------C G-CUUC-UAA G-AAGCUU-U CUU--GAU-G GAG|GGG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -ACU-A--(- GAGA-)-UAG -U-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp9509 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67232 BASE COUNT 352 a 333 c 458 g 287 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -CUU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CNU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Tully,R.E., van Berkum,P.B. and Keister,D.L. TITLE Distribution of genes of the cytochrome P450 operon among the rhizobia and bradyrhizobia JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U38469|g1055273 BASE COUNT 358 a 346 c 469 g 297 t 2906 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGUU-A AC-UC-GUG( CCA--GCAG- CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--CAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.legum4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum str. C-O5 LMG 9518. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum str. C-O5 LMG 9518. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67233 nat_host= Phaseolus vulgaris isolate_name= C-O5 BASE COUNT 353 a 333 c 458 g 285 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---NN-N |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12798 BASE COUNT 353 a 334 c 455 g 286 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUN GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUNU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UNC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77125|g443967 LMG 9503 (T) = CIAT 899 legacy_attribute= biovar:group IIB nat_host= Phaseolus vulgaris BASE COUNT 222 a 189 c 287 g 181 t 3497 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG....(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUN -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA........ .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11344|g464203 BASE COUNT 358 a 345 c 464 g 297 t 2912 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -C|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- UUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens str. K-Ag-3. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens str. K-Ag-3. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14504|g464144 isolate_name= K-Ag-3 BASE COUNT 357 a 345 c 469 g 297 t 2908 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UC- 1261 G-AU-CAG|U CAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGUC G-AUCUG-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGUG-U- U------ACC 1981 -UCU-A--(- GAGA-)-UAG -G-GGGU--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.leg899 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium leguminosarum. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium leguminosarum. ORGANISM Rhizobium leguminosarum. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55233 CIAT 899 = LMG 9503 (T) legacy_attribute= biovar:phaseoli nat_host= Phaseolus vulgaris NB: Dupuy et al. IJSB 44(3):461-473 (1994) list this as Rhb.tropici BASE COUNT 69 a 57 c 83 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spLeuc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. (Leucaena) TAL 1145. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. (Leucaena) TAL 1145. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS George,M.L.C., Young,J.P.W. and Borthakur,D. TITLE Genetic characterization of Rhizobium sp. strain TAL1145 that nodulates tree legumes JOURNAL Can. J. Microbiol. 40, 208-215 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63824 isolate_name= (Leucaena) BASE COUNT 68 a 57 c 84 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.10 AGROBACTERIUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.10 AGROBACTERIUM_ASSEMBLAGE. ORGANISM 2.14.1.9.10 AGROBACTERIUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lib.spNels 4376 bp RNA RNA 02-JUL-1998 DEFINITION Liberobacter sp. str. Nelspruit. ACCESSION No information KEYWORDS No information. SOURCE Liberobacter sp. str. Nelspruit. ORGANISM Liberobacter sp. REFERENCE 1 AUTHORS Jagoueix,S., Bove,J.M. and Garnier,M. TITLE The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria JOURNAL Int. J. Syst. Bacteriol. 44, 379-386 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22533|g438690 geog_source= South Africa biol_source= periwinkle and citrus plants isolate_name= Nelspruit BASE COUNT 358 a 318 c 453 g 320 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-CC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-AU (---U----- ---------- ---------- 241 --------UU -)AU-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUUU---U -UCUA-C-GG 421 -GAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- C--CCU-(-- ---------A 541 UU-------- -)-GGGG--- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- --UUUUA--- ---)------ ---------| -----U--U- G--GAG---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-GAA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUNN-NC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-G--CG- 1261 A-UU-AAG|U UAG---AGGU G-AAA-UC-C CA-GG--C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGAU U-GUCUA-GA GUU-----CA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCU--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-UGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCA -UUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------U ---GUUGG-- -AC----GAU 1981 -AUC-A--(- GAGA-)-UGA -U-AUUU--- UC-------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA--C| UUU-CA--UA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UCU- 2281 AG--UUGC-C AU-CAA---- ---------- -----GUUUA GAU-(----U ---UU---)- 2341 AUCUAGAU-G ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-UA-CU-U- U-AUA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CG-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -UA--CAAUG GGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-U CCCC--AAAG -UC-C-AUC- UCAGUUCNGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-GCCU -GAA-G-ACG 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-CC-GG-CC A-CGGU-AAG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lib.spPoon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Liberobacter sp. str. Poona. ACCESSION No information KEYWORDS No information. SOURCE Liberobacter sp. str. Poona. ORGANISM Liberobacter sp. REFERENCE 1 AUTHORS Jagoueix,S., Bove,J.M. and Garnier,M. TITLE The phloem-limited bacterium of greening disease of citrus is a member of the alpha subdivision of the Proteobacteria JOURNAL Int. J. Syst. Bacteriol. 44, 379-386 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22532|g438689 geog_source= India biol_source= periwinkle and citrus plants isolate_name= Poona BASE COUNT 356 a 317 c 453 g 313 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-NC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-AU (--GC----- ---------- ---------- 241 --------AA -)-U-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUUU---U -UCUANC-GG 421 -GAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- C--CCU-(-- ---------A 541 UU-------- -)-GGGG--- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- --UUUUA--- ---)------ ---------| -----U--U- G--GAG---- 661 ----AGAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-G--CG- 1261 A-UU-AAG|U UAG---AGGU G-AAA-UC-C CA-GG--C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGU U-GUCUA-GA GCUU----UA G-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCU--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-UGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCA -UUCAG-UGG 1741 CN--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|N-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---AUAGG-- -AC----GAU 1981 -AUC-A--(- GAGA-)-UGG -U-AUUU--- UC-------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA--C| CUU-UA--CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AU-CAA---- ---------- -----GUUUA GGU-(---UU ---UU---)- 2341 ACCUAGAU-G ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-NA-CU-U- U-AUA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ANG--UC -A-AGUC-CU CAU-G-CG-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -UA--CAAUG GGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-U CCCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CNN-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-GCCU -GAA-G-ACG 3121 G-UGU-N--U -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cresc5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB13. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB13. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Ely,B. TITLE DNA sequence of the 3' end of the Caulobacter crescentus 16S rRNA gene JOURNAL Nucleic Acids Res. 20, 1423-1423 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63362 (bases 1 to 224) isolate_name= CB13 BASE COUNT 48 a 61 c 73 g 42 t 4152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (.......U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cau.cresc6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caulobacter crescentus str. CB15. ACCESSION No information KEYWORDS No information. SOURCE Caulobacter crescentus str. CB15. ORGANISM Caulobacter crescentus. REFERENCE 1 AUTHORS Ely,B. TITLE DNA sequence of the 3' end of the Caulobacter crescentus 16S rRNA gene JOURNAL Nucleic Acids Res. 20, 1423-1423 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63363 (bases 1 to 224) isolate_name= CB15 BASE COUNT 48 a 61 c 73 g 42 t 4152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (.......U- C)-GAGAGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.rubi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium rubi. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium rubi. ORGANISM Agrobacterium rubi. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67228 LMG 156 (T) = ATCC 13335 BASE COUNT 354 a 328 c 461 g 291 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G N-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.rubi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium rubi. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium rubi. ORGANISM Agrobacterium rubi. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12787 BASE COUNT 355 a 329 c 460 g 291 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.rubi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium rubi. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium rubi. ORGANISM Agrobacterium rubi. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14503|g464138 BASE COUNT 358 a 341 c 467 g 301 t 2909 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.sp3_10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium sp. str. AF3.10. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium sp. str. AF3.10. ORGANISM Agrobacterium sp. REFERENCE 1 AUTHORS Bouzar,H., Chilton,W.S., Nesme,X., Dessaux,Y., Vaudequin,V., Petit,A., Jones,J.B. and Hodge,N.C. TITLE A new Agrobacterium strain isolated from aerial tumors on Ficus benjamina L. JOURNAL Appl. Environ. Microbiol. 61 (1), 65-73 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z30542|g773193 nat_host= Ficus benjamina isolate_name= AF3.10 BASE COUNT 358 a 324 c 457 g 297 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- AUG----GUC 1981 -AUU-G--(- GAGA-)-CGA -U-GACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| CCC-UA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumef10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14506|g464140 BASE COUNT 357 a 342 c 471 g 302 t 2904 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUG-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UC-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumef11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens str. IAM 13558. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens str. IAM 13558. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (2), 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13943|g870811 isolate_name= IAM 13558 BASE COUNT 343 a 324 c 441 g 287 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUG-C-GG 421 -AAU-AG-CU C--------- ------UG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-N-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- NUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UC-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-GA-CC A-CGGU-AGG NUC-AG-CG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequencer JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13294 BASE COUNT 357 a 328 c 458 g 293 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUG---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUN- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CCN--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens str. ICPB TT111 LMG 196. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens str. ICPB TT111 LMG 196. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67223 isolate_name= ICPB TT111 BASE COUNT 357 a 328 c 457 g 293 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUG---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(NCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Yang,D., Oyaizu,Y., Oyaizu,H., Olsen,G.J. and Woese,C.R. TITLE Mitochondrial origins JOURNAL Proc. Natl. Acad. Sci. U.S.A. 82, 4443-4447 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11223 ATCC 4720 = NCIMB 8150 = IAM 1524 = CCM 1000 = DSM 30150 common_name= alpha purple bacterium BASE COUNT 364 a 344 c 471 g 310 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUG---C -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACG-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens str. C-58. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens str. C-58. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS van Bruggen,A.H., Jochimsen,K.N., Steinberger,E.M., Segers,P. and Gillis,M. TITLE Classification of Rhizomonas suberifaciens, an unnamed Rhizomonas species, and Sphingomonas spp. in rRNA superfamily IV JOURNAL Int. J. Syst. Bacteriol. 43, 1-7 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S56774 isolate_name= C-58 BASE COUNT 71 a 60 c 83 g 47 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C--UACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCC- -AAA-C-UC- -(UACG)--- GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb._JL103 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. JL103.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. JL103.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= JL103.Rhizobium isolate BASE COUNT 67 a 62 c 84 g 47 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12784 BASE COUNT 358 a 329 c 457 g 293 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. A1-3 DSM 1726. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. A1-3 DSM 1726. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 1726 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29621|g505522 isolate_name= A1-3 NB: unrelated to other azospirilla and groups with Agrobacterium BASE COUNT 338 a 300 c 435 g 287 t 3016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .).G------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( .......... ....GUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-N-N--- -UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UANNN-NNNG G(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.tumefa6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium tumefaciens. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium tumefaciens. ORGANISM Agrobacterium tumefaciens. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14500|g464141 legacy_attribute= biovar 1 BASE COUNT 362 a 340 c 467 g 303 t 2904 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CAU-A C-CCUU---U -CCUG-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAGG-- AUU---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UU|--- ---------C ---GGGG-U- UUG----GGC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CCC-CA-GAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.vitis4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium vitis str. S4. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium vitis str. S4. ORGANISM Agrobacterium vitis. REFERENCE 1 AUTHORS Otten,L., De Ruffray,P., de Lajudie,P. and Michot,B. TITLE Sequence and charactisation of a ribosomal RNA operon from Agrobacterium vitis JOURNAL Mol. Gen. Genet. 251, 99-107 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28505|g1143912 (bases 800 to 2359) isolate_name= S4 NB: bp 1-60n removed BASE COUNT 372 a 346 c 469 g 313 t 2876 others ORIGIN 1 .......... ...AUUAGUC UAGAUUGAAU UCUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUA---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UGUG--- -AC----CGC 1981 -CAC-G--(- GAGA-)-CGU -G-GUUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.vitis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium vitis. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium vitis. ORGANISM Agrobacterium vitis. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67225 BASE COUNT 357 a 330 c 454 g 292 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUA---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-UU-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UGUG--- -AC----CGC 1981 -CAC-G--(- GAGA-)-CGU -G-GUUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.vitis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium vitis. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium vitis. ORGANISM Agrobacterium vitis. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12795|g303506 BASE COUNT 357 a 331 c 453 g 290 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUA---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UGUG--- -AC----CGC 1981 -CAC-G--(- GAGA-)-CGU -G-GUUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ag.vitis3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrobacterium vitis. ACCESSION No information KEYWORDS No information. SOURCE Agrobacterium vitis. ORGANISM Agrobacterium vitis. REFERENCE 1 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes Proposal for rejection of Agrobacterium tumefaciens and JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14502|g464143 BASE COUNT 360 a 342 c 461 g 301 t 2912 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUA---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UGUG--- -AC----CGC 1981 --AC-G--(- GAGA-)-CGU -G-GUUU--- UU-------- ---CC----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUC 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B279 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B279. str. B279. ACCESSION No information KEYWORDS No information. SOURCE str. B279. str. B279. ORGANISM str. B279. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13133|g495580 isolate_name= B279 BASE COUNT 178 a 174 c 222 g 149 t 3653 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GUC-GCAG- 361 -A-CG-GG-U AAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUG---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---C---(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AAUG-- NUG---A-|G CCCGC----- -GU|----U. .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .AG-AC-AA- C-A---GU-G 901 GGG-AAGAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UAA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( G......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... UU-CGGAGG- AACA-CCAG- 1441 -U-C-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-G-GU --A--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 NCNCCCCCC- GUC-UCU--- --CCU-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGNAGG-C-A G-CU-AA-CC A-CGGU-AGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp_540 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam540.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam540.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam540.Rhizobium isolate BASE COUNT 67 a 64 c 83 g 46 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.galeg4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium galegae str. gal 1261 HAMBI 540. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium galegae str. gal 1261 HAMBI 540. ORGANISM Rhizobium galegae. REFERENCE 1 AUTHORS Young,J.P.W. and Downer,H.L. TITLE The genus Rhizobium: phylogenetic inferences from partial sequences of 16S rRNA genes. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63823 HAMBI 540 = LMG 6214 = ATCC 43677 (T) nat_host= Galega orientalis Lam. from Finland isolate_name= gal 1261 BASE COUNT 69 a 62 c 83 g 46 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.galeg2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium galegae str. gal 1261 LMG 6214. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium galegae str. gal 1261 LMG 6214. ORGANISM Rhizobium galegae. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67226 LMG 6214 = ATCC 43677 (T) = HAMBI 540 nat_host= Galega orientalis Lam. from Finland isolate_name= gal 1261 BASE COUNT 358 a 337 c 452 g 284 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- CA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- -AC----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GG-AGG-A(G 2881 -CGA)UCCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.galeg3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium galegae. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium galegae. ORGANISM Rhizobium galegae. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12793 BASE COUNT 358 a 335 c 450 g 284 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- -AC----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GN-AGG-A(G 2881 -CGA)UCCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G NCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UNC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.galega 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium galegae str. gal 1261 ATCC 43677 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhizobium galegae str. gal 1261 ATCC 43677 (T). ORGANISM Rhizobium galegae. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43677 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11343|g464210 ATCC 43677 (T) = LMG 6214 = HAMBI 540 legacy_attribute= Galega orientalis root nodule, Finland; subsp Lindstrom nat_host= Galega orientalis Lam. from Finland isolate_name= gal 1261 NB: 'CG' at 861-862r changed to 'SS' BASE COUNT 361 a 342 c 459 g 293 t 2921 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUUCC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- -AC----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUGN--- NN-------- ---NN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1141 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam1141.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam1141.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam1141.Rhizobium isolate BASE COUNT 68 a 66 c 87 g 47 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .UAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---ANC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AC. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp113 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 113. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 113. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14512|g537400 isolate_name= 113 BASE COUNT 365 a 348 c 465 g 293 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU UAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- -CU----CGC 1981 -CAC-A--(- GAGA-)-UGU -G-GN-N--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp4540 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam4540.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam4540.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam4540.Rhizobium isolate BASE COUNT 67 a 65 c 84 g 44 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3394 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3394.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3394.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3394.Rhizobium isolate BASE COUNT 66 a 65 c 84 g 45 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spSIN1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. SIN1. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. SIN1. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Rana,D. and Krishnan,H.B. TITLE A new root-nodulating symbiont of the tropical legume Sesbania, Rhizobium sp. SIN-1, is closely related to R. galegae, a species that nodulates temperate legumes JOURNAL FEMS Microbiol. Lett. 134, 19-25 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39920|g671729 geog_source= Tamil Nadu, India biol_source= root nodules on Sesbania aculeata isolate_name= SIN1 BASE COUNT 68 a 64 c 84 g 44 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--ACUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spOK55 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. OK-55. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. OK-55. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14510|g464205 isolate_name= OK-55 BASE COUNT 362 a 350 c 467 g 293 t 2904 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-GCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------C ---CCGG--- -CC----AGC 1981 -CAC-A--(- GAGA-)-UGU -G-GNNUU-- ---------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-GG-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp_490 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam490.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam490.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam490.Rhizobium isolate BASE COUNT 66 a 63 c 85 g 44 t 4118 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-....A A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -CCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.B 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.11 BLASTOBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.11 BLASTOBACTER_SUBGROUP. ORGANISM 2.14.1.9.11 BLASTOBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.capsul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter capsulatus. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter capsulatus. ORGANISM Blastobacter capsulatus. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Syst. Appl. Microbiol. 17, 51-57 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73042|g505526 ATCC 43294 = IFAM 1004 BASE COUNT 339 a 334 c 451 g 291 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGU-A -GCC-UU--A UCAC-AUGCA A-CUC-GAUC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-UA (--GG----- ---------- ---------- 241 --------AG -)UA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGNG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-CAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-CCA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGN A--UG-UU-- -------A|A -CC-GU-CGG -GC-AG---- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAACCA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGU-C- GCG----GAC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--ACAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGN-UC UUGNA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-CCCC -GGG-G-GUA 3121 G-UGC-N-CU -AC-CCC--- ---------- ---------- -----(---- -GGAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-N-A G-CU-AC-CC A-CGGG-AGG GUC-AG-CG- UGU-GGGG-U 3301 G---AAGUC- GAAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN15d 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN15d.. ACCESSION No information KEYWORDS No information. SOURCE clone JN15d. ORGANISM clone JN15d. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69280|g1177265 BASE COUNT 89 a 67 c 110 g 78 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAA |-GGGG-C-- 1201 UAGACGUUGU UC-GGAAUUA -CU-GGGV|G UAAA-ACGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUA-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAAUGC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CM---- ---K-(-AA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0710 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0710. str. B0710. ACCESSION No information KEYWORDS No information. SOURCE str. B0710. str. B0710. ORGANISM str. B0710. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12226|g529305 geog_source= Savannah R. near Aiken,SC, 259 m deep biol_source= Middendorf aquifer isolate_name= B0710 BASE COUNT 201 a 188 c 254 g 177 t 3556 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ........GU UC-GGAAUUA -CU-GNGC|G UAAA-GCNC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|N -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|N-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---GGGU-C- GCG----GAC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUNC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-ACC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blb.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastobacter aggregatus. ACCESSION No information KEYWORDS No information. SOURCE Blastobacter aggregatus. ORGANISM Blastobacter aggregatus. REFERENCE 1 AUTHORS Hugenholtz,P., Stackebrandt,E. and Fuerst,J.A. TITLE A phylogenetic analysis of the genus Blastobacter with a view to its future reclassification JOURNAL Syst. Appl. Microbiol. 17, 51-57 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73041|g505525 ATCC 43293 = IFAM 1003 BASE COUNT 340 a 333 c 452 g 285 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-UU--A UCAC-AUGCA A-CUC-GAUC 121 A--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GU----- ---------- ---------- 241 --------AG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGAG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CGUG---C -CCUA-C-GG 421 -AAU-AG-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--U UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGG---- 661 ----UAUG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UUUC-AC-CG 1021 --AU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GUC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-CCA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -CAA-GGAAU UG-GCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAACAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---GGGU-C- GCG----GAC 1981 -AGU-G--(- GAGA-)-CAU -U-GUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-CA-GGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-NCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-NC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--ACAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GAC-ACA--- --CCA-UGGG A--GU-UGG- UU-UC-CCCC -GAG-G-GUA 3121 G-UGC-N-CU -AC-CCC--- ---------- ---------- -----(---- -GGAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-AC-CC A-CGGG-AGG GUC-AG-CG- UCU-GGGG-U 3301 G---AAGUC- GAAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON19 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON19.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON19. ORGANISM clone pCON19. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27846|g903917 BASE COUNT 114 a 107 c 147 g 97 t 3911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ........A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUA-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 CU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G...(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GU-UU-ACCC -GAA-G-GCA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GA-CC A-CGGU-AGG CUC-AG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1492 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1492. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1492. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90812|g984200 isolate_name= HAMBI 1492 BASE COUNT 59 a 49 c 74 g 44 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.C 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.12 SRH.FREDII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.12 SRH.FREDII_SUBGROUP. ORGANISM 2.14.1.9.12 SRH.FREDII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.terang 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium teranga. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium teranga. ORGANISM Sinorhizobium teranga. REFERENCE 1 AUTHORS De Lajudie,P., Willems,A., Pot,B., Dewettinck,D., Maestrojuan,G., Neyra,M., Collins,M.D., Dreyfus,B., Kersters ,K. and Gillis,M. TITLE Polyphasic taxomomy of Rhizobia:emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 715-733 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68387|g577090 LMG 6463 = ORS 22 nat_host= Sesbania rostrata; from Senegal BASE COUNT 353 a 337 c 459 g 287 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UC-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGU-C- GCG----GAU 1981 -UAC-A--(- GAGA-)-UGU -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp7834 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS De Lajudie,P., Willems,A., Pot,B., Dewettinck,D., Maestrojuan,G., Neyra,M., Collins,M.D., Dreyfus,B., Kersters ,K. and Gillis,M. TITLE Polyphasic taxomomy of Rhizobia:emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 715-733 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68388|g577091 LMG 7834 = ORS 1009 (T) nat_host= Acacia laeta; from Senegal BASE COUNT 353 a 337 c 459 g 287 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UU-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UC-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGU-C- GCG----GAU 1981 -UAC-A--(- GAGA-)-UGU -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1392 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1392. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1392. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90809|g984197 isolate_name= HAMBI 1392 BASE COUNT 61 a 46 c 72 g 47 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1698 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1698. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1698. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90816|g984204 isolate_name= HAMBI 1698 BASE COUNT 61 a 47 c 72 g 46 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1395 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1395. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1395. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90811|g984199 isolate_name= HAMBI 1395 BASE COUNT 61 a 47 c 72 g 46 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1551 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1551. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1551. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90814|g984202 isolate_name= HAMBI 1551 BASE COUNT 62 a 46 c 72 g 46 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1393 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1393. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1393. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90810|g984198 isolate_name= HAMBI 1393 BASE COUNT 61 a 46 c 73 g 46 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UA (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1496 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1496. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1496. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90813|g984201 isolate_name= HAMBI 1496 BASE COUNT 60 a 47 c 74 g 45 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--GC----- ---------- ---------- 241 --------AA -)CA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp8310 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77120|g443965 BASE COUNT 223 a 196 c 287 g 173 t 3497 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--GC----- ---------- ---------- 241 --------AA -)CA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----ANGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... ...GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AA........ |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.saheli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium saheli. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium saheli. ORGANISM Sinorhizobium saheli. REFERENCE 1 AUTHORS De Lajudie,P., Willems,A., Pot,B., Dewettinck,D., Maestrojuan,G., Neyra,M., Collins,M.D., Dreyfus,B., Kersters ,K. and Gillis,M. TITLE Polyphasic taxomomy of Rhizobia:emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 715-733 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68390|g577093 LMG 7837 (T) = ORS 609 nat_host= Sesbania cannabina; from Senegal BASE COUNT 353 a 338 c 461 g 284 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--GC----- ---------- ---------- 241 --------AA -)UA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-C UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-N |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.fredi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium fredii. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium fredii. ORGANISM Sinorhizobium fredii. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67231 Former RDP Sids: Rhb.fredi2 LMG 6217 (T) = DSM 5851 = ATCC 35423 = USDA 205 nat_host= Glycine max Merr. from PRC(China) nat_host= Glycine max Merr. from PRC (China) nat_host= Glycine sojae (=Glycine max?) from PRC (China) NB: former name Rhizobium fredii BASE COUNT 353 a 339 c 462 g 283 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12783 Former RDP Sids: Rhb.melil4 NB: former name Rhizobium meliloti BASE COUNT 354 a 333 c 448 g 281 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUC A-UAC-UGGC A-AUCUA-GA GUC-----CA G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCU--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UAC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-NGGG-U 3301 N---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67222 Former RDP Sids: Rhb.melil3 LMG 6133 (T) = NZP 4027 nat_host= Medicago sativa from Australia NB: former name Rhizobium meliloti BASE COUNT 357 a 337 c 459 g 283 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUC A-UAC-UGGC A-AUCUA-GA GUC-----CA G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCU--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti str. 3DOa2 ATCC 9930 (T). ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti str. 3DOa2 ATCC 9930 (T). ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 9930 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77121|g443963 Former RDP Sids: Rhb.melil6 ATCC 9930 (T) = DSM 30135 = LMG 8890 isolate_name= 3DOa2 NB: former name Rhizobium meliloti BASE COUNT 251 a 226 c 320 g 199 t 3380 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ......GC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUC A-UAC-UGGC A-AUCUA-GA GUC-----CA G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCU--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUUCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA A......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14509|g464204 Former RDP Sids: Rhb.melil7 NB: former name Rhizobium meliloti BASE COUNT 364 a 350 c 471 g 295 t 2896 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUC A-UAC-UGGC A-AUCUA-GA GUC-----CA G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCU--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-CCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.fredi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium fredii. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium fredii. ORGANISM Sinorhizobium fredii. REFERENCE 1 AUTHORS Willems,A.M.C.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77123|g443961 Former RDP Sids: Rhb.fredi4 ATCC 35423 = DSM 5851 = USDA 205 = LMG 6217 (T) nat_host= Glycine max Merr. from PRC(China) nat_host= Glycine max Merr. from PRC (China) nat_host= Glycine sojae (=Glycine max?) from PRC (China) NB: former name Rhizobium fredii BASE COUNT 259 a 242 c 346 g 208 t 3321 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .........A G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGG.. 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.xinjia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium xinjiangensis. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium xinjiangensis. ORGANISM Sinorhizobium xinjiangensis. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12796 BASE COUNT 353 a 338 c 461 g 283 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UNC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.fredi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium fredii. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium fredii. ORGANISM Sinorhizobium fredii. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14516|g464208 Former RDP Sids: Rhb.fredi5 ATCC 35423 = DSM 5851 = USDA 205 = LMG 6217 (T) nat_host= Glycine max Merr. from PRC(China) nat_host= Glycine max Merr. from PRC (China) nat_host= Glycine sojae (=Glycine max?) from PRC (China) NB: 'CG' at 861-862r changed to 'SS' former name Rhizobium fredii BASE COUNT 361 a 350 c 470 g 295 t 2900 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.1079_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1079.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1079.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1079.Rhizobium isolate BASE COUNT 52 a 45 c 70 g 42 t 4167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CUA------- -----UC-CA 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1968 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1968.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1968.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1968.Rhizobium isolate BASE COUNT 67 a 59 c 86 g 48 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tropi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tropici str. BR-816. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tropici str. BR-816. ORGANISM Rhizobium tropici. REFERENCE 1 AUTHORS Segovia,L., Young,J.P.W. and Martinez-Romero,E. TITLE Reclassification of American Rhizobium leguminosarum biovar phaseoli type I strains as Rhizobium etli sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 374-377 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20765 isolate_name= BR-816 BASE COUNT 57 a 44 c 70 g 45 t 4160 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CU 781 A-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C AC.)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1970 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1970.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1970.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1970.Rhizobium isolate BASE COUNT 68 a 60 c 86 g 49 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.fredii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium fredii. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium fredii. ORGANISM Sinorhizobium fredii. REFERENCE 1 AUTHORS Jarvis,B.D., Downer,H.L. and Young,J.P. TITLE Phylogeny of fast-growing soybean-nodulating rhizobia supports synonymy of Sinorhizobium and Rhizobium and assignment to Rhizobium fredii JOURNAL Int. J. Syst. Bacteriol. 42, 93-96 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74163 Former RDP Sids: Rhb.fredii USDA 205 = DSM 5851 = ATCC 35423 = LMG 6217 (T) nat_host= Glycine max Merr. from PRC(China) nat_host= Glycine max Merr. from PRC (China) nat_host= Glycine sojae (=Glycine max?) from PRC (China) NB: former name Rhizobium fredii BASE COUNT 69 a 58 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.mel169 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55242 Former RDP Sids: Rhb.mel169 NB: former name Rhizobium meliloti BASE COUNT 70 a 58 c 83 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb._JL084 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. JL084.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. JL084.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= JL084.Rhizobium isolate BASE COUNT 68 a 60 c 83 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.sp1624 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium sp. str. HAMBI 1624. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium sp. str. HAMBI 1624. ORGANISM Sinorhizobium sp. REFERENCE 1 AUTHORS Haukka,K., Lindstrom,K. and Young,J.P.W. TITLE Diversity of 16S rRNA sequences among and within strains of African rhizobia isolated from Acacia and Prosopis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90815|g984203 isolate_name= HAMBI 1624 BASE COUNT 60 a 47 c 74 g 45 t 4150 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GU----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGA. .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1088 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1088.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1088.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1088.Rhizobium isolate BASE COUNT 67 a 60 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55243 Former RDP Sids: Rhb.melil5 NB: former name Rhizobium meliloti BASE COUNT 69 a 58 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.cc2155 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. cc2155b.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. cc2155b.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= cc2155b.Rhizobium isolate BASE COUNT 68 a 61 c 80 g 51 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAC- 361 -A-CG-GG-U GAUU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACU)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.1115_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1115.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1115.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1115.Rhizobium isolate BASE COUNT 67 a 60 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G G......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1177 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1177.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1177.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1177.Rhizobium isolate BASE COUNT 70 a 61 c 86 g 49 t 4110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-N- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-A.. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melil2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti. ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Young,J.P., Downer,H.L. and Eardly,B.D. TITLE Phylogeny of the phototrophic rhizobium strain BTAi1 by polymerase chain reaction-based sequencing of a 16S rRNA gene segment JOURNAL J. Bacteriol. 173, 2271-2277 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55495 Former RDP Sids: Rhb.melil2 nat_host= Medicago sativa from NZ NB: former name Rhizobium meliloti BASE COUNT 69 a 58 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.melilo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium meliloti str. 3DOa2 ATCC 9930 (T). ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium meliloti str. 3DOa2 ATCC 9930 (T). ORGANISM Sinorhizobium meliloti. REFERENCE 1 AUTHORS Eardly,B.D., Young,J.P. and Selander,R.K. TITLE Phylogenetic position of Rhizobium sp. Strain Or 191, a symbiont of both Medicago sativa and Phaseolus vulgaris, based on partial sequences of the 16S rRNA and nifH genes JOURNAL Appl. Environ. Microbiol. 58, 1809-1815 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 9930 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55241 Former RDP Sids: Rhb.mel930 Rhb.melilo ATCC 9930 (T) = DSM 30135 = LMG 8890 isolate_name= 3DOa2 NB: former name Rhizobium meliloti BASE COUNT 69 a 58 c 84 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1079 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1079.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1079.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1079.Rhizobium isolate BASE COUNT 70 a 62 c 87 g 49 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-A.. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Srh.fredi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sinorhizobium fredii. ACCESSION No information KEYWORDS No information. SOURCE Sinorhizobium fredii. ORGANISM Sinorhizobium fredii. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12792 Former RDP Sids: Rhb.fredi3 NB: former name Rhizobium fredii BASE COUNT 354 a 336 c 456 g 283 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GAU 1981 -ACG-A--(- GAGA-)-UCG -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUN- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GUA 3121 G-UAC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-NGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.cc2160 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. cc2160.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. cc2160.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= cc2160.Rhizobium isolate BASE COUNT 69 a 63 c 86 g 49 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...A-CUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACC)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AC. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1083 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1083.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1083.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1083.Rhizobium isolate BASE COUNT 70 a 65 c 85 g 48 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AN-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-C- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- NGA------- -----UC-CA 781 G-AC-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-CA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AC. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1114 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 1114.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 1114.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 1114.Rhizobium isolate BASE COUNT 69 a 62 c 83 g 49 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GGA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-C- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-AGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-CA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.D 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.13 BARTONELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.13 BARTONELLA_SUBGROUP. ORGANISM 2.14.1.9.13 BARTONELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.bacil3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii str. G7464 ATCC 35685. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii str. G7464 ATCC 35685. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Relman,D.A., Lepp,P.W., Sadler,K.N. and Schmidt,T.M. TITLE Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria JOURNAL Mol. Microbiol. 6, 1801-1807 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35685 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11683 ATCC 35685 = NCTC 12138 isolate_name= G7464 BASE COUNT 343 a 328 c 437 g 291 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU--C (--UU----- ---------- ---------- 241 -------UUU -)G--AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-NCN---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- CUA---GU-G 901 GGN-NAUAUU G-GACAAU-- GG-GN-(NNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-G-GA G-AA--GAAN ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGGCG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGNGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAG 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- GA-GCUAA-U CUCC--ANAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- NAUAC-GUU- CCC-GGG-CC CUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.bacill 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii str. G7464 ATCC 35685. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii str. G7464 ATCC 35685. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS O'Connor,S.P., Dorsch,M., Steigerwalt,A.G., Brenner,D.J. and Stackebrandt,E. TITLE with the alpha-2 subgroup of the class Proteobacteria 16S RNA sequences of Bartonella bacilliformis and cat scratch disease bacillus reveal phylogenetic relationships JOURNAL J. Clin. Microbiol. 29, 2144-2150 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35685 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65249 ATCC 35685 = NCTC 12138 isolate_name= G7464 BASE COUNT 366 a 344 c 455 g 304 t 2907 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU--C (--UU----- ---------- ---------- 241 --------UU -)GC-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-AG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-CAAA-)U -UUGU-G--C UAAUACA-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAG 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG -(GGA-A)CC UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.bacil2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii str. G7464 NCTC 12138. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii str. G7464 NCTC 12138. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Birtles,R.J., Harrison,T.G., Saunders,N.A., Fry,N.K. and Taylor,A.G. TITLE The taxonomy of Bartonella bacilliformis based on 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Lett. 83, 187-192 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12138 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60042 NCTC 12138 = ATCC 35685 isolate_name= G7464 BASE COUNT 342 a 321 c 433 g 295 t 2985 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU--C (--UU----- ---------- ---------- 241 -------UUU -)G--AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GACGGC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-NC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-G-GA G-AA--GAAU ---------G 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGG--C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUGAUAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(U UC-A)A-CCU -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -UGGCGC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGNAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAG 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUN-GG-ANA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UC -GGANNCGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.elizab 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella elizabethae str. F9251. ACCESSION No information KEYWORDS No information. SOURCE Bartonella elizabethae str. F9251. ORGANISM Bartonella elizabethae. REFERENCE 1 AUTHORS Daly,J.S., Worthington,M.G., Brenner,D.J., Moss,C.W., Hollis ,D.G., Weyant,R.S., Steigerwalt,A.G., Weaver,R.E., Daneshvar ,M.I. and O'Connor,S.P. TITLE Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis JOURNAL J. Clin. Microbiol. 31, 872-881 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01260 Former RDP Sids: Roc.sainte isolate_name= F9251; B91-002005 NB: former name Rochalimaea saintelizabethsina BASE COUNT 360 a 344 c 458 g 301 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CU (---U----- ---------- ---------- 241 --------UU -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCCU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACB---- ---------- ---------- ---------- ---UCC-(-- --------CU 541 UU-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAG 1981 -AGU-G--(- GAGA-)-CAC -U-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG -(GGA-A)CC UGUGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.quint3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella quintana.. ACCESSION No information KEYWORDS No information. SOURCE Bartonella quintana. ORGANISM Bartonella quintana. REFERENCE 1 AUTHORS Jalava,J., Kotilainen,P., Nikkari,S., Skurnik,M., Vinttinen ,E., Lehtonen,O.-P., Eerola,E. and Toivanen,P. TITLE Use of the polymerase chain reaction and DNA sequencing for detection of Bartonella quintana in the aortic valve of a patient with culture-negative infective endocarditis JOURNAL Clin. Infect. Dis. 21, 891-896 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28268|g886133 BASE COUNT 343 a 328 c 443 g 292 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------CU 541 CU-G------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----GUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUA -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.quinta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella quintana str. Fuller ATCC VR-358. ACCESSION No information KEYWORDS No information. SOURCE Bartonella quintana str. Fuller ATCC VR-358. ORGANISM Bartonella quintana. REFERENCE 1 AUTHORS Weisburg,W.G., Woese,C.R., Dobson,M.E. and Weiss,E. TITLE A common origin of rickettsiae and certain plant pathogens JOURNAL Science 230, 556-558 (1985) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-358 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11927 Former RDP Sids: Roc.quinta isolate_name= Fuller NB: former name Rochaelimaea quintana BASE COUNT 365 a 347 c 465 g 315 t 2884 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUCAAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------CU 541 CU-G------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----GUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-NC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUA -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-UCCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.quint2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella quintana str. Fuller ATCC VR-358. ACCESSION No information KEYWORDS No information. SOURCE Bartonella quintana str. Fuller ATCC VR-358. ORGANISM Bartonella quintana. REFERENCE 1 AUTHORS Regnery,R.L., Anderson,B.E., Clarridge,J.E.III., Rodriguez-Barradas,M.C., Jones,D.C. and Carr,J.H. TITLE Characterization of a novel Rochalimaea species, R. henselae sp. nov., isolated from blood of a febrile, human immunodeficiency virus-positive patient JOURNAL J. Clin. Microbiol. 30, 265-274 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-358 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73228 Former RDP Sids: Roc.quint2 isolate_name= Fuller NB: former name Rochaelimaea quintana BASE COUNT 347 a 330 c 443 g 293 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------CU 541 CU-G------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----GUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUC-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUA -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.spCatG 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii subsp. berkhoffii. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii subsp. berkhoffii. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Bergmans,A.C., Schellekens,J.F., Jong de,C.M.A., Schot,C.S., Amerongen van,G. and Schouls,L.M. TITLE Incidence of bartonella infections in Dutch cats JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69039|g1171497 BASE COUNT 127 a 105 c 147 g 92 t 3905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CA (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CU-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (-UGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU U......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.clardg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella clarridgeiae str. Houston-2 ATCC 51734 (T). ACCESSION No information KEYWORDS No information. SOURCE Bartonella clarridgeiae str. Houston-2 ATCC 51734 (T). ORGANISM Bartonella clarridgeiae. REFERENCE 1 AUTHORS Lawson,P.A., Clarridge,J.E. and Collins,M.D. TITLE Description of Bartonella clarridgeiae sp. nov. isolated from the cat of a patient with Bartonella henselae septicemia JOURNAL Med. Microbiol. Lett. 5, 64-73 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51734 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89208 ATCC 51734 (T) = VA 3786 isolate_name= Houston-2 BASE COUNT 364 a 338 c 458 g 305 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CA (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CU-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-UGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GGA 1981 -AGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAU-C(G 2881 -CAA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GU-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG -(GGA-A)CC UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.vinso4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672 (T). ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii subsp. berkhoffii str. 93-C01 ATCC 51672 (T). ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Breitschwerdt,E.B., Kordick,D.L., Malarkey,D.E., Keene,B., Hadfield,T.L. and Wilson,K. TITLE Endocarditis in a dog due to infection with a novel Bartonella subspecies JOURNAL J. Clin. Microbiol. 33, 154-160 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51672 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35052|g517045 isolate_name= 93-C01 BASE COUNT 354 a 337 c 445 g 292 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .)A-CUG|-N 61 CCUCAG-AAC -GAAC-GC-- UGNC-GNC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCCU---C -UCUN-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- -------U-C CC-A--C--- ---AGG-(-- --------GA 541 GA-------- -)-CCU---- -U-UG----G GA--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.vinso5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii str. G7464 ATCC 35685. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii str. G7464 ATCC 35685. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Kordick,D.L., Swaminathan,B., Greene,C.E., Wilson,K.H., Whitney,A.M., O'Connor,S., Hollis,D.G., Matar,G.M., Steigerwalt,A.G., Malcolm,G.B., Hayes,P.S., Hadfield,T.L., Breitschwerdt,E.B. and Brenner,D.J. TITLE Bartonella vinsonii subsp. berkhoffii subsp. nov. isolated from dogs; Bartonella vinsonii subsp. vinsonii; and emended description of Bartonella vinsonii JOURNAL Int. J. Syst. Bacteriol. 46, 704-709 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35685 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26258|g973190 ATCC 35685 = NCTC 12138 isolate_name= G7464 BASE COUNT 367 a 346 c 463 g 302 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- -------U-C CC-A--C--- ---AGG-(-- --------GA 541 GA-------- -)-CCU---- -U-UG----G GA--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG -(GGA-A)CC UGUGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.taylor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella taylorii str. M6 NCTC 12861 (T). ACCESSION No information KEYWORDS No information. SOURCE Bartonella taylorii str. M6 NCTC 12861 (T). ORGANISM Bartonella taylorii. REFERENCE 1 AUTHORS Birtles,R.J., Harrison,T.G., Saunders,N.A. and Molyneux,D.H . TITLE Proposals to unify the genera Grahamella and Bartonella with descriptions of Bartonella talpae comb.nov., Bartonella peromysci comb. nov., and three new species, Bartonella grahamii sp. nov., Bartonella taylorii sp. nov., and Bartonella doshiae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 1-8 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12861 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31350|g467555 biol_source= blood of Apodemus sp. isolate_name= M6 BASE COUNT 347 a 332 c 436 g 290 t 2971 others ORIGIN 1 .......... .......... .......... .CAACUACGU -GAGUU(U-G A)U-CCU|-- 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (---U----- ---------- ---------- 241 --------UU -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-G------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-GUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-A-A |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GC-AA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.graham 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella grahamii str. V2 NCTC 12860 (T). ACCESSION No information KEYWORDS No information. SOURCE Bartonella grahamii str. V2 NCTC 12860 (T). ORGANISM Bartonella grahamii. REFERENCE 1 AUTHORS Birtles,R.J., Harrison,T.G., Saunders,N.A. and Molyneux,D.H . TITLE Proposals to unify the genera Grahamella and Bartonella, with descriptions of Bartonella talpae comb. nov., Bartonella peromysci comb. nov., and three new species, Bartonella grahamii sp. nov., Bartonella taylorii sp. nov., and Bartonella doshiae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 1-8 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12860 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31349|g467554 biol_source= the blood of Clethrionomys glareolus isolate_name= V2 BASE COUNT 354 a 333 c 440 g 296 t 2953 others ORIGIN 1 .......... .......... .......... .CAACUACGU GGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 UU-U------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAA--CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.vinso3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Daly,J.S., Worthington,M.G., Brenner,D.J., Moss,C.W., Hollis ,D.G., Weyant,R.S., Steigerwalt,A.G., Weaver,R.E., Daneshvar ,M.I. and O'Connor,S.P. TITLE Rochalimaea elizabethae sp. nov. isolated from a patient with endocarditis JOURNAL J. Clin. Microbiol. 31, 872-881 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-152 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01259|g152533 isolate_name= Baker NB: GenBank has name as Rochalimaea vinsonii BASE COUNT 363 a 344 c 459 g 300 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG -(GGA-A)CC UGUGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.vinson 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii.. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Regnery,R.L., Anderson,B.E., Clarridge,J.E.III., Rodriguez-Barradas,M.C., Jones,D.C. and Carr,J.H. TITLE Characterization of a novel Rochalimaea species, R. henselae sp. nov., isolated from blood of a febrile, human immunodeficiency virus-positive patient JOURNAL J. Clin. Microbiol. 30, 265-274 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73230 Former RDP Sids: Roc.vinson NB: former name Rochaelimaea vinsonii BASE COUNT 351 a 331 c 441 g 289 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.vinso2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152. ACCESSION No information KEYWORDS No information. SOURCE Bartonella vinsonii subsp. vinsonii str. Baker ATCC VR-152. ORGANISM Bartonella vinsonii. REFERENCE 1 AUTHORS Birtles,R.J., Harrison,T.G., Saunders,N.A. and Molyneux,D.H . TITLE Proposals to unify the genera Grahamella and Bartonella with descriptions of Bartonella talpae comb.nov., Bartonella peromysci comb. nov., and three new species, Bartonella grahamii sp. nov., Bartonella taylorii sp. nov., and Bartonella doshiae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 1-8 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC VR-152 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31352|g467557 isolate_name= Baker BASE COUNT 353 a 336 c 444 g 294 t 2949 others ORIGIN 1 .......... .......... .......... .CCACUAC.. ......(... .)U-ACG|-U 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GU-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.doshia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella doshiae str. R18 NCTC 12862 (T). ACCESSION No information KEYWORDS No information. SOURCE Bartonella doshiae str. R18 NCTC 12862 (T). ORGANISM Bartonella doshiae. REFERENCE 1 AUTHORS Birtles,R.J., Harrison,T.G., Saunders,N.A. and Molyneux,D.H . TITLE Proposals to unify the genera Grahamella and Bartonella with descriptions of Bartonella talpae comb.nov., Bartonella peromysci comb. nov., and three new species, Bartonella grahamii sp. nov., Bartonella taylorii sp. nov., and Bartonella doshiae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 1-8 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12862 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31351|g467556 biol_source= the blood of Microtus agrestis isolate_name= R18 BASE COUNT 350 a 329 c 433 g 287 t 2977 others ORIGIN 1 .......... .......... .......... .CAACUA... ......(... .)...CG|-U 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA U-AUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 --GA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.hensel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella henselae str. Houston-1. ACCESSION No information KEYWORDS No information. SOURCE Bartonella henselae str. Houston-1. ORGANISM Bartonella henselae. REFERENCE 1 AUTHORS Regnery,R.L., Anderson,B.E., Clarridge,J.E.III., Rodriguez-Barradas,M.C., Jones,D.C. and Carr,J.H. TITLE Characterization of a novel Rochalimaea species, R. henselae sp. nov., isolated from blood of a febrile, human immunodeficiency virus-positive patient JOURNAL J. Clin. Microbiol. 30, 265-274 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M73229 Former RDP Sids: Roc.hensel isolate_name= Houston-1 NB: former name Rochalimaea henselae BASE COUNT 346 a 330 c 446 g 290 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.hense3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella henselae str. BA-TF. ACCESSION No information KEYWORDS No information. SOURCE Bartonella henselae str. BA-TF. ORGANISM Bartonella henselae. REFERENCE 1 AUTHORS Relman,D.A., Lepp,P.W., Sadler,K.N. and Schmidt,T.M. TITLE Phylogenetic relationships among the agent of bacillary angiomatosis, Bartonella bacilliformis, and other alpha-proteobacteria JOURNAL Mol. Microbiol. 6, 1801-1807 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11684 Former RDP Sids: Roc.hense3 isolate_name= BA-TF NB: former name Rochalimaea henselae BASE COUNT 345 a 328 c 444 g 289 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----C--CU (---U----- ---------- ---------- 241 --------UU -)AG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CA C--------- ------AG-- A(-GAAA-)U -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 UU-U------ -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GN-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AGGU G-AAA-UC-C CA-GGN-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UAAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GC-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUG -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGS-S---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-AGU-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-A G-GC-AA-CC A-CGGU-AGG GCC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bar.hense2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bartonella henselae str. BA-TF. ACCESSION No information KEYWORDS No information. SOURCE Bartonella henselae str. BA-TF. ORGANISM Bartonella henselae. REFERENCE 1 AUTHORS Relman,D.A., Loutit,J.S., Schmidt,T.M., Falkow,S. and Tompkins,L.S. TITLE The agent of bacillary angiomatosis. An approach to the identification of uncultured pathogens JOURNAL N. Engl. J. Med. 323, 1573-1580 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59459 Former RDP Sids: Roc.hense2 isolate_name= BA-TF NB: former name Rochalimaea henselae BASE COUNT 93 a 109 c 131 g 91 t 3952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... ..U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GAA 1981 -GGU-G--(- GAGA-)-CAC -C-CUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.E 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.14 BRUCELLA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.14 BRUCELLA_ASSEMBLAGE. ORGANISM 2.14.1.9.14 BRUCELLA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.H152_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. H152. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. H152. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Laguerre,G., Fernandez,M.P., Edel,V., Normand,P. and Amarger ,N. TITLE Genomic heterogeneity among French Rhizobium strains isolated from Phaseolus vulgaris L. JOURNAL Int. J. Syst. Bacteriol. 43, 761-767 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L19662|g425191 Former RDP Sids: Rhb.spH153 isolate_name= H152 NB: same as Rhb.spH152? only one base different - 37 'a' vs 'g' BASE COUNT 64 a 55 c 78 g 49 t 4130 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CU....... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.spH152 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. H152. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. H152. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Laguerre,G., Fernandez,M.P., Edel,V., Normand,P. and Amarger ,N. TITLE Genomic heterogeneity among French Rhizobium strains isolated from Phaseolus vulgaris L. JOURNAL Int. J. Syst. Bacteriol. 43, 761-767 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L12054 isolate_name= H152 BASE COUNT 64 a 55 c 77 g 49 t 4131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-NCG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CU....... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11974 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 99 a 47 c 85 g 87 t 4058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-UAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--UG-UU-- -------A|G -AC-GU-UGG -AA-A----- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- --------UU -UUCAG-UGU 1741 C......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11961 (bases 1 to 350) library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 183 a 125 c 170 g 151 t 3747 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UA- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU U-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-GA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAU- G-CC-GU--A 1621 AAC..-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... ....GG---| ACG-AA-ACA |---C|A--G 2161 GU-SC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-AG-A A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-UG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UU -UA--CAAUA GGA-A-G-C- AA-AAC-G(G 2881 -CGA)CGUU- ---------- AA-GCAAA-U CCUA--AAAA -AA-U-GCC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGC-UG -GAAU-UAC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-GC)-G CC--CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Rossello-Mora,R., Ludwig,W. and Schleifer,K.H. TITLE Zoogloea ramigera: a phylogenetically diverse species JOURNAL FEMS Microbiol. Lett. 114, 129-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74915|g434338 BASE COUNT 364 a 345 c 466 g 300 t 2901 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-ACCUA-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CGGU-C- GCG----GAU 1981 -UAC-A--(- GAGA-)-UGU -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 A-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Shin,Y., Hiraishi,A. and Sugiyama,J. TITLE Molecular systematics of the genus Zoogloea and emendation of the genus JOURNAL Int. J. Syst. Bacteriol. 43, 826-831 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14255 BASE COUNT 349 a 330 c 444 g 282 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AA-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-NC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GG-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-ACCUA-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-UG---- ---------- 1681 -(-CA-UG)- ---------- ---------- ---------- -------CAU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUNA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UG|--- ---------U ---CGGU-C- GCG----GAU 1981 -UAC-A--(- GAGA-)-UGU -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---A(---CA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 A-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2101 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2101. str. SBR2101. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2101. str. SBR2101. ORGANISM str. SBR2101. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84630|g871751 isolate_name= SBR2101 BASE COUNT 94 a 84 c 119 g 69 t 4010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAA---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myp.dmorph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplana dimorpha. ACCESSION No information KEYWORDS No information. SOURCE Mycoplana dimorpha. ORGANISM Mycoplana dimorpha. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12786 BASE COUNT 346 a 347 c 462 g 276 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CCU-A C-CCUU---U -UCUG-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUG-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AC-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myp.ramosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplana ramosa str. IAM 13949. ACCESSION No information KEYWORDS No information. SOURCE Mycoplana ramosa str. IAM 13949. ORGANISM Mycoplana ramosa. REFERENCE 1 AUTHORS Takeuchi,M., Sakane,T., Yanagi,M., Yamasato,K., Hamana,K. and Yokota,A. TITLE Taxonomic study of bacteria isolated from plants: proposal of Sphingomonas rosa sp. nov., Sphingomonas pruni sp. nov., Sphingomonas asaccharolytica sp. nov., and Sphingomonas mali sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45 (2), 334-341 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13944|g870814 isolate_name= IAM 13949 BASE COUNT 328 a 328 c 429 g 272 t 3019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CCUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-A--C UAAUACC-GU 481 AU-GUN---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-GUCUA-GA GUN-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-N-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--AC-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(N 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUN- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CNN- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GNG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON47 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON47.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON47. ORGANISM clone pCON47. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27818|g903913 BASE COUNT 103 a 105 c 141 g 99 t 3928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .........G |-GGGG-C-- 1201 UAG-CGUUAU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- A......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .AU---GC-- --UCA-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA -U-GU---GU -GA--CA-UG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAACU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCNAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CC- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Slm.fluora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Solomonas fluorantheni.. ACCESSION No information KEYWORDS No information. SOURCE Solomonas fluorantheni. ORGANISM Solomonas fluorantheni. REFERENCE 1 AUTHORS Liesack,W., Weyland,H. and Stackebrandt,E. TITLE Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria JOURNAL Microb. Ecol. 21, 191-198 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54743|g887632 BASE COUNT 301 a 300 c 392 g 243 t 3140 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCCC(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACU-CUA..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ..AAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-GGG -GG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -GGCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CAGAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------C ---CGGUC-- GCG-----GA 1981 -CAC-A--(- GAGA-)-UGU -G-UC-UU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----NG---| ACC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ocb.anthr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ochrobactrum anthropi. ACCESSION No information KEYWORDS No information. SOURCE Ochrobactrum anthropi. ORGANISM Ochrobactrum anthropi. REFERENCE 1 AUTHORS Nakagawa,Y. TITLE Phylogenetic study of Ochrobactrum species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63837|g961484 BASE COUNT 346 a 334 c 459 g 289 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GNC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGNAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------C ---CGGUC-- GCG-----GA 1981 -CAC-A--(- GAGA-)-UGU -G-UC-UU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| NCC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-N-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGN)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CU GC........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ocb.12950 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ochrobactrum sp.. ACCESSION No information KEYWORDS No information. SOURCE Ochrobactrum sp. ORGANISM Ochrobactrum sp. REFERENCE 1 AUTHORS Nakagawa,Y. TITLE Phylogenetic study of Ochrobactrum species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63836|g961483 BASE COUNT 352 a 331 c 454 g 295 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------C ---CGGUC-- GCG-----GA 1981 -CAC-A--(- GAGA-)-UGU -G-UC-UU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCA --GU(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-U-GC-C NUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- AA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-GCCC -GAA-G-GCA 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GU-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CU GC........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ocb.anthro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ochrobactrum anthropi. ACCESSION No information KEYWORDS No information. SOURCE Ochrobactrum anthropi. ORGANISM Ochrobactrum anthropi. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12794 BASE COUNT 349 a 336 c 456 g 287 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CUUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAGG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-UGG -GG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -UUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UA|--- ---------C ---CGGUC-- GCG-----GA 1981 -CAC-A--(- GAGA-)-UGU -G-UC-UU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUUN- ---------- NA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGA- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- NUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UNU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 C---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.aborts 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella abortus str. 11/19. ACCESSION No information KEYWORDS No information. SOURCE Brucella abortus str. 11/19. ORGANISM Brucella abortus. REFERENCE 1 AUTHORS Dorsch,M., Moreno,E. and Stackebrandt,E. TITLE Nucleotide sequence of the 16S rRNA from Brucella abortus JOURNAL Nucleic Acids Res. 17, 1765-1765 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X13695 isolate_name= 11/19 BASE COUNT 348 a 334 c 456 g 288 t 2950 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-CUC-GAGC 121 G--C------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---C-U-(-- ---------U 541 -G-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-C-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUGGU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A A-AC-GA-CC A-CGGU-AGG GUC-AG-CG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.neotom 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella neotomae. ACCESSION No information KEYWORDS No information. SOURCE Brucella neotomae. ORGANISM Brucella neotomae. REFERENCE 1 AUTHORS Wilson,K.H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26167|g417990 BASE COUNT 339 a 333 c 454 g 283 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGGA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GAAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U UAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAC- N-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.suis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella suis. ACCESSION No information KEYWORDS No information. SOURCE Brucella suis. ORGANISM Brucella suis. REFERENCE 1 AUTHORS Wilson,K.H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26169|g417993 BASE COUNT 339 a 334 c 452 g 283 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ANAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GNAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|N-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-NCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.ovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella ovis. ACCESSION No information KEYWORDS No information. SOURCE Brucella ovis. ORGANISM Brucella ovis. REFERENCE 1 AUTHORS Wilson,K.H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26168|g417992 BASE COUNT 339 a 335 c 453 g 283 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGNU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.melten 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella melitensis. ACCESSION No information KEYWORDS No information. SOURCE Brucella melitensis. ORGANISM Brucella melitensis. REFERENCE 1 AUTHORS Wilson,K.H. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26166|g417991 legacy_attribute= biovar:biotype 1 BASE COUNT 335 a 333 c 452 g 282 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GNAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGNU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|N-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bru.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brucella canis.. ACCESSION No information KEYWORDS No information. SOURCE Brucella canis. ORGANISM Brucella canis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37584|g576792 BASE COUNT 341 a 337 c 455 g 284 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--CGU-A C-CAUU---U -GCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-GUG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AAUG-- AUC---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGA A-GUCUU-GA GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -CC-GU-CGG -GG-UG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CAC -UUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -AGU-G--(- GAGA-)-CAC -U-AUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GCA-C(G 2881 -CGA)GUGU- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG KUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GC........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.15 RHB.LOTI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.15 RHB.LOTI_SUBGROUP. ORGANISM 2.14.1.9.15 RHB.LOTI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp7854 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS De Lajudie,P., Willems,A., Pot,B., Dewettinck,D., Maestrojuan,G., Neyra,M., Collins,M.D., Dreyfus,B., Kersters ,K. and Gillis,M. TITLE Polyphasic taxomomy of Rhizobia:emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 715-733 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68391|g577094 LMG 7854 = ORS 1002 nat_host= Acacia senegal; from Senegal BASE COUNT 347 a 344 c 463 g 282 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUG-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -ACC-A--(- GAAA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp7836 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS De Lajudie,P., Willems,A., Pot,B., Dewettinck,D., Maestrojuan,G., Neyra,M., Collins,M.D., Dreyfus,B., Kersters ,K. and Gillis,M. TITLE Polyphasic taxomomy of Rhizobia:emendation of the genus Sinorhizobium and description of Sinorhizobium meliloti comb. nov., Sinorhizobium saheli sp. nov., and Sinorhizobium teranga sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 715-733 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68389|g577092 LMG 7836 = ORS 1001 nat_host= Acacia senegal; from Senegal BASE COUNT 347 a 344 c 463 g 282 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUG-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -ACC-A--(- GAAA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2108 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2108. str. SBR2108. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2108. str. SBR2108. ORGANISM str. SBR2108. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84634|g871755 isolate_name= SBR2108 BASE COUNT 93 a 86 c 121 g 66 t 4010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.huaku2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium huakuii. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium huakuii. ORGANISM Rhizobium huakuii. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D13431|g464209 BASE COUNT 344 a 346 c 469 g 284 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUC-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCUUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCUU- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.huakui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium huakuii. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium huakuii. ORGANISM Rhizobium huakuii. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12797 BASE COUNT 345 a 345 c 459 g 281 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUC-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-NGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.loti4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium loti. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium loti. ORGANISM Rhizobium loti. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12791 BASE COUNT 346 a 344 c 459 g 282 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 UU-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUC-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-NUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3353 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3353.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3353.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3353.Rhizobium isolate BASE COUNT 68 a 65 c 85 g 47 t 4111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE42 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-42. str. E-42. ACCESSION No information KEYWORDS No information. SOURCE str. E-42. str. E-42. ORGANISM str. E-42. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58345|g1718221 biol_source= lignin enrichment culture isolate_name= E-42 BASE COUNT 60 a 77 c 95 g 66 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... ....AUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG G......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3143 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3143.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3143.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3143.Rhizobium isolate BASE COUNT 68 a 65 c 85 g 47 t 4111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3357 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3357.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3357.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3357.Rhizobium isolate BASE COUNT 67 a 64 c 86 g 47 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-A.. .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.huaku4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium huakuii. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium huakuii. ORGANISM Rhizobium huakuii. REFERENCE 1 AUTHORS Chen,W., Wang,E., Wang,S., Li,Y., Chen,X. and Li,Y. TITLE Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China JOURNAL Int. J. Syst. Bacteriol. 45, 153-159 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S74905|g806462 BASE COUNT 68 a 62 c 83 g 47 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2209 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam2209.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam2209.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam2209.Rhizobium isolate BASE COUNT 68 a 65 c 81 g 47 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.tiansh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium tianshanense str. A-1BS CCBAU 3306 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhizobium tianshanense str. A-1BS CCBAU 3306 (T). ORGANISM Rhizobium tianshanense. REFERENCE 1 AUTHORS Chen,W., Wang,E., Wang,S., Li,Y., Chen,X. and Li,Y. TITLE Characteristics of Rhizobium tianshanense sp. nov., a moderately and slowly growing root nodule bacterium isolated from an arid saline environment in Xinjiang, People's Republic of China JOURNAL Int. J. Syst. Bacteriol. 45, 153-159 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S74904|g806461 nat_host= Glycyrrhiza pallidiflora from Xinjiang isolate_name= A-1BS BASE COUNT 69 a 61 c 82 g 48 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.medter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium mediterraneum str. UPM-Ca36. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium mediterraneum str. UPM-Ca36. ORGANISM Rhizobium mediterraneum. REFERENCE 1 AUTHORS Nour,S.M., Cleyet-Marel,J.-C., Normand,P. and Fernandez,M.P . TITLE Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 640-648 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L38825|g1050333 isolate_name= UPM-Ca36 BASE COUNT 344 a 343 c 457 g 279 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGC-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--AG-CU-- -------A|G -CC-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUC 1981 -UCC-A--(- GAGA-)-UGG -A-GACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3620 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3620.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3620.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3620.Rhizobium isolate BASE COUNT 68 a 63 c 81 g 48 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUNCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--- GA........ .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plb.myrsin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phyllobacterium myrsinacearum. ACCESSION No information KEYWORDS No information. SOURCE Phyllobacterium myrsinacearum. ORGANISM Phyllobacterium myrsinacearum. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12789 BASE COUNT 350 a 338 c 459 g 285 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GN-GAC-C(G 2881 -CGA)GGNN- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plb.rubiac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phyllobacterium rubiacearum. ACCESSION No information KEYWORDS No information. SOURCE Phyllobacterium rubiacearum. ORGANISM Phyllobacterium rubiacearum. REFERENCE 1 AUTHORS Yanagi,M. and Yamasato,K. TITLE Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing of 16S rRNA gene using PCR and DNA sequence JOURNAL FEMS Microbiol. Lett. 107, 115-120 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12790 BASE COUNT 349 a 335 c 450 g 288 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CG C--------- ------AU-- G(-GAAA-)C -GUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 UU-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-CU- 1261 A-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGU A-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -GC-AG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUG -UUCGG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-NNUAA-U CUCC--AAAA -GC-C-AUN- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUNCA -UNAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GUG 3121 C-UNU-N-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-AA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON7.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON7. ORGANISM clone pCON7. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M ., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27853|g903924 BASE COUNT 137 a 129 c 191 g 122 t 3797 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-GC-AAG|U UAG---GGGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCC-UUUA A-AAC-UGCU G-GUCUU-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA.... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .....CU-C- A-UGG-GA-G A-CU-G-CCG --G-(-GG-U CA)-ACU-CG -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GS-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAAUC CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.sp051 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus sp. str. THI051. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus sp. str. THI051. ORGANISM Thiobacillus sp. REFERENCE 1 AUTHORS Katayama,Y., Hiraishi,A. and Kuraishi,H. TITLE Phylogeny of facultatively chemolithotrophic thiobacilli with ubiquinone-10 JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32248|g514990 isolate_name= THI051 BASE COUNT 340 a 334 c 449 g 283 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAU-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-GU-CAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGCU G-AUCUA-GA GUU-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CGAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--AG-CU-- -------A|G -CU-GU-UGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGAUC-- GCG----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA UCGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -GA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ER2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ER2. str. ER2. ACCESSION No information KEYWORDS No information. SOURCE str. ER2. str. ER2. ORGANISM str. ER2. REFERENCE 1 AUTHORS Topp,E., Hanson,R.S., Ringelberg,D.B., White,D.C. and Wheatcroft,R. TITLE Isolation and characterization of an N-Methylcarbamate insecticide-degrading methylotrophic bacterium JOURNAL Appl. Environ. Microbiol. 59, 3339-3349 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20802|g388899 isolate_name= ER2 BASE COUNT 347 a 339 c 439 g 285 t 2966 others ORIGIN 1 .......... .......... .......... ...AAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GU--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAG---C -UCUA-C-GG 421 -AAU-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 UA-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----UUGG-- AUG---A-|G CCCAC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACU-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| CUUC-AC-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGC- A-ACC-G-GA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUA-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAG-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GCAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-U -------A|C -GC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUG-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- CUG----GCU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCU-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---CA ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GC -GAGG-A-AG 2761 G-UG-AAG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-- -UUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUAUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCA 3121 C-U---G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GU-GA-CC A-CGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp2026 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 2026.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 2026.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 2026.Rhizobium isolate BASE COUNT 65 a 62 c 80 g 49 t 4120 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AGC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--CG G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CUA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -ANA)-GGAU ----GA-U-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG--C.... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1416 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam1416.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam1416.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam1416.Rhizobium isolate BASE COUNT 68 a 63 c 82 g 48 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ANA-C-UCC -(UACG)--G GA........ .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.loti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium loti str. 3F6g2 LMG 4284. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium loti str. 3F6g2 LMG 4284. ORGANISM Rhizobium loti. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67230 LMG 4284 = USDA 3127 nat_host= Caragana arborescens from Colorado isolate_name= 3F6g2 BASE COUNT 352 a 343 c 457 g 284 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-NG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -AC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.ciceri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium ciceri str. UPM-Ca7 ATCC 51585 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhizobium ciceri str. UPM-Ca7 ATCC 51585 (T). ORGANISM Rhizobium ciceri. REFERENCE 1 AUTHORS Nour,S.M., Fernandez,M.P., Normand,P. and Cleyet-Marel,J.C. TITLE Rhizobium ciceri sp. nov., consisting of strains that nodulate chickpeas (Cicer arietinum L.) JOURNAL Int. J. Syst. Bacteriol. 44, 511-522 (1994) STANDARD No information REFERENCE 2 AUTHORS Nour,S.M., Cleyet-Marel,J.-C., Normand,P. and Fernandez, M.P. TITLE Genomic heterogeneity of strains nodulating chickpeas (Cicer arietinum L.) and description of Rhizobium mediterraneum, sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 640-648 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51585 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07934 geog_source= Spain biol_source= nodulated chickpeas (Cicer arietinum L.) isolate_name= UPM-Ca7 BASE COUNT 349 a 339 c 451 g 282 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--GC----- ---------- ---------- 241 --------AA -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-NC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGN-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -AC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp0218 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. ciam0218.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. ciam0218.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= ciam0218.Rhizobium isolate BASE COUNT 68 a 62 c 83 g 49 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-CUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG....... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3854 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3854.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3854.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3854.Rhizobium isolate BASE COUNT 69 a 62 c 82 g 49 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GA........ .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.loti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium loti. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium loti. ORGANISM Rhizobium loti. REFERENCE 1 AUTHORS Young,J.P.W. and Downer,H.L. TITLE The genus Rhizobium: phylogenetic inferences from partial sequences of 16S rRNA genes JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63825 NZP 2213 = LMG 6125 = ATCC 33669 (T) nat_host= Lotus corniculatus from New Zealand BASE COUNT 70 a 60 c 81 g 49 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AA....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.loti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium loti. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium loti. ORGANISM Rhizobium loti. REFERENCE 1 AUTHORS Willems,A., Gillis,M. and Collins,M.D. TITLE Phylogenetic analysis of Rhizobia and Agrobacteria based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 43, 305-313 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67229 LMG 6125 = ATCC 33669 (T) = NZP 2213 nat_host= Lotus corniculatus from New Zealand BASE COUNT 351 a 341 c 459 g 285 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-NCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp1148 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. TAL1148. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. TAL1148. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14511|g537399 isolate_name= TAL1148 BASE COUNT 358 a 353 c 471 g 300 t 2894 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GCU---- ---------- ---------- 241 -------UGG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--C AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UCCC(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUU-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGU G--UG-CU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -AC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA AUGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.loti5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium loti. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium loti. ORGANISM Rhizobium loti. REFERENCE 1 AUTHORS Oyaizu,H., Matsumoto,S., Minamisawa,K. and Gamou,T. TITLE Distribution of Rhizobia in leguminous plants surveyed by phylogenetic identification JOURNAL J. Gen. Appl. Microbiol. 39, 339-354 (1993) STANDARD No information REFERENCE 2 AUTHORS Sawada,H., Ieki,H., Oyaizu,H. and Matsumoto,S. TITLE Proposal for rejection of Agrobacterium tumefaciens and revised descriptions for the genus Agrobacterium and for Agrobacterium rhizobacter and Agrobacterium rhizogenes JOURNAL Int. J. Syst. Bacteriol. 43, 694-702 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14514|g464207 ATCC 33669 (T) = LMG 6125 = NZP 2213 nat_host= Lotus corniculatus from New Zealand BASE COUNT 358 a 354 c 470 g 295 t 2899 others ORIGIN 1 .......... .......... .......... ....AACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--CC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--GC----- ---------- ---------- 241 --------AA -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-G---- --CG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---C -UCUA-C-GG 421 -AAC-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---UC--(-- --------UU 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AA-CG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-ACC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUC-GA GUC-----CG A-GA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CUC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -CC-GU-CGG -CA-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUU -GUCGG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CGGUC-- GCG----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UACCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| ACC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GU -GA--CAGUG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CUCC--AAAA -GC-C-AUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UU-ACCC -GAA-G-GCG 3121 C-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.1.9.G 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.1.9.16 RDB.MARINUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.1.9.16 RDB.MARINUM_SUBGROUP. ORGANISM 2.14.1.9.16 RDB.MARINUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligL87 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. L-87. str. L-87. ACCESSION No information KEYWORDS No information. SOURCE str. L-87. str. L-87. ORGANISM str. L-87. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58352|g1718228 biol_source= lignin enrichment culture isolate_name= L-87 BASE COUNT 67 a 76 c 89 g 65 t 4079 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----AUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUUCA-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AC -UA--CAGAG GGC-A-G... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligL86 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. L-86. str. L-86. ACCESSION No information KEYWORDS No information. SOURCE str. L-86. str. L-86. ORGANISM str. L-86. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58351|g1718227 biol_source= lignin enrichment culture isolate_name= L-86 BASE COUNT 73 a 80 c 93 g 73 t 4057 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .........U -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CUAU-C- GCG----AUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUUCA-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AC -UA--CAGAG GGC-A-G-C- GA-CUU-A(G 2881 -CGA)UA... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rdb.orient 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobium orientis str. MB312 JCM 9337. ACCESSION No information KEYWORDS No information. SOURCE Rhodobium orientis str. MB312 JCM 9337. ORGANISM Rhodobium orientis. REFERENCE 1 AUTHORS Hiraishi,A., Urata,K. and Satoh,T. TITLE A new genus of marine budding phototrophic bacteria, Rhodobium gen. nov., which includes Rhodobium orientis sp. nov. and Rhodobium marinum comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 226-234 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30792|g494949 Former RDP Sids: Rhh.orient isolate_name= MB312 NB: former name Rhodohalobium orientum BASE COUNT 335 a 343 c 453 g 277 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAU---U -GGUG-C-GG 421 -AAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UC 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGGC A-AUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-CGG -CC-AG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -GUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GUU 1981 -ACC-G--(- GAGA-)-CGG -U-UUCCU-- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-CAG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-CUU-C(U 2881 -CGA)GGAG- ---------- GA-GCUAA-U CCCC--AAAA -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-UU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UU-ACCC -GAA-G-GCG 3121 C-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GA-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.spCPB2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. CP-B-2. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. CP-B-2. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14426|g633099 isolate_name= CP-B-2 BASE COUNT 316 a 293 c 397 g 247 t 3123 others ORIGIN 1 .......... .......... .......... ...NAACCUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----C C----AACG. .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .GG|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCAU---U -GGUG-C-GG 421 -AAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UC 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..CCA---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .........A U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UNUG A-UAC-UGGC A-AUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .G--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------C ---CGAU-C. ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-CUU-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CCCCA-AAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-UU)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.spCPB3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. CP-B-3. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. CP-B-3. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14427|g633100 isolate_name= CP-B-3 BASE COUNT 316 a 293 c 397 g 247 t 3123 others ORIGIN 1 .......... .......... .......... ...NAACCUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----C C----AACG. .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .GG|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCAU---U -GGUG-C-GG 421 -AAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UC 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G..CCA---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .........A U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCC-UNUG A-UAC-UGGC A-AUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .G--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AAC-CCUUNG ACA-UC|--- ---------C ---CGAU-C. ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGC-A-G-C- GA-CUU-C(G 2881 -CGA)GGAG- ---------- GA-GCUAA-U CCCCA-AAAN -GC-C-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-UU)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP553 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP553.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP553. ORGANISM clone JAP553. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09830|g495563 BASE COUNT 66 a 57 c 80 g 51 t 4122 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--UG-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCA-GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UUU-A C-CCAG---U -GGUU-C-GG 421 -AAU-AA-CU U--------- ------CA-- G(-GAAA-)C -CGGA-G--C UAAUACC-GA 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas marina subsp. agilis str. GN-14. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas marina subsp. agilis str. GN-14. ORGANISM Rhodopseudomonas marina. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M27534 isolate_name= GN-14 NB: This subsp. & strain do not match Bact-Nom Rps.marina str . BASE COUNT 341 a 334 c 442 g 270 t 2989 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAG---U -GGUA-C-GG 421 -GAU-AA-CC N--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| NUUC-AG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 NAG-CGUUAU UC-GGAAUUA -CU-NGGC|G UAAA-GCGC- GCG-UAG-GC -N|-NA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UCUN A-UAC-UGGC A-AUCUC-GA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CNAACUG-- ---------- ---------- ---------G 1501 UCC--GA-GA CUGACG-CUG AG-G------ -------CG- N-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GNU 1981 -ACC-G--(- GAGA-)-CGG -U-AUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-NGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-N-NN-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAAUG GGA------- --------(- 2881 ----)----- ---------- -----AAA-U CCCN--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GGGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNN- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rdb.marin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobium marinum. ACCESSION No information KEYWORDS No information. SOURCE Rhodobium marinum. ORGANISM Rhodobium marinum. REFERENCE 1 AUTHORS Kawasaki,H., Hoshino,Y. and Yamasato,K. TITLE Phylogenetic diversity of phototrophic purple non-sulfur bacteria in the Proteobacteria .alpha. group JOURNAL FEMS Microbiol. Lett. 112, 61-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14434|g633106 Former RDP Sids: Rps.marin4 NCIMB 2201 = BN 126 = ATCC 35675 = DSM 2698 (T) biol_source= marine sponge NB: former name Rhodopseudomonas marina BASE COUNT 312 a 295 c 401 g 249 t 3119 others ORIGIN 1 .......... .......... .......... ...NAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (.-....... .......... .......... 241 .......... .).A-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAG---U -GGUA-C-GG 421 -GAU-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CG 1021 --GG-GAA-- GA-------- ---------( ------UA.. ......---) .......... 1081 .......... .........A U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UN-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U NAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UCUC A-UAC-UGGC A-AUCUC-GA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UA-UA)N ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UCUUNG ACA-UC|--- ---------C ---CGAU-C. ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA-A..... ........(. 2881 ....)..... .......... ......AA-U CCCCA-AAAN -AC-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GGGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rps.spHGJF 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601. ACCESSION No information KEYWORDS No information. SOURCE Rhodopseudomonas sp. str. H. Gest HG/JF ATCC 35601. ORGANISM Rhodopseudomonas sp. REFERENCE 1 AUTHORS Hiraishi,A., Urata,K. and Satoh,T. TITLE A new genus of marine budding phototrophic bacteria, Rhodobium gen. nov., which includes Rhodobium orientis sp. nov. and Rhodobium marinum comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 226-234 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35601 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30791|g494948 Former RDP Sids: Rps.marin3 ATCC 35601 = DSM 8319 isolate_name= H. Gest HG/JF NB: former name Rhodopseudomonas marina BASE COUNT 334 a 339 c 449 g 268 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAG---U -GGUA-C-GG 421 -GAU-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UCUG A-UAC-UGGC A-AUCUC-GA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GUU 1981 -ACC-G--(- GAGA-)-CGG -U-AUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA------- --------(- 2881 ----)----- ---------- -----AAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GGGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rdb.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodobium marinum. ACCESSION No information KEYWORDS No information. SOURCE Rhodobium marinum. ORGANISM Rhodobium marinum. REFERENCE 1 AUTHORS Hiraishi,A., Urata,K. and Satoh,T. TITLE A new genus of marine budding phototrophic bacteria, Rhodobium gen. nov., which includes Rhodobium orientis sp. nov. and Rhodobium marinum comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 226-234 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30790|g494947 Former RDP Sids: Rps.marin2 DSM 2698 (T) = BN 126 = ATCC 35675 = NCIMB 2201 biol_source= marine sponge NB: former name Rhodopseudomonas marina BASE COUNT 334 a 339 c 449 g 268 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCAG---U -GGUA-C-GG 421 -GAU-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCUC| UUUC-AG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U CAG---GGGU G-AAA-UC-C CA-GAG-C(- UC-A)A-CUC -UG-G-AAC- 1321 -UGCC-UCUG A-UAC-UGGC A-AUCUC-GA GUC-----CG G-AA-GAGGU UGG-U|GGAA 1381 UU-CCGAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 UCC--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -CC-GU-UGG -UG-GG---- ---------- 1681 -(-UA-UA)- ---------- ---------- ---------- -------CUC -AUCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---CGAU-C- GCG----GUU 1981 -ACC-G--(- GAGA-)-CGG -U-AUCCU-- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-GA-U AA)-GCC-GA -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GU -GA--CAGUG GGA------- --------(- 2881 ----)----- ---------- -----AAA-U CCCC--AAAA -AC-C-GUC- UCAGUUCGGA 2941 U-UGUCCUC- (UGCAAC-U- C)-GGGGGCA -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-CU-ACCC -GAA-G-ACG 3121 G-UGC-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GG-CC A-CGGU-AGG GUC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2-BET 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2 BETA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2 BETA_SUBDIVISION. ORGANISM 2.14.2 BETA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.1 NEISSERIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.1 NEISSERIA_GROUP. ORGANISM 2.14.2.1 NEISSERIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.1.1 VIT.STERCORARIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.1.1 VIT.STERCORARIA_SUBGROUP. ORGANISM 2.14.2.1.1 VIT.STERCORARIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Iod.fluvia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Iodobacter fluviatile. ACCESSION No information KEYWORDS No information. SOURCE Iodobacter fluviatile. ORGANISM Iodobacter fluviatile. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22511 Former RDP Sids: Crb.fluvia NB: former name Chromobacterium fluviatile BASE COUNT 359 a 323 c 449 g 300 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CUAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---GNNA--- ---)------ -----GA--| -CCUCU--C- G--UUA---- 661 ----UUAG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(U -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCGC| UUUU-GU-UC 1021 --GG-GAG-- GA-A-AU-CC --UAG-UGG( C----UAAUA -----U---) CCAU-UG-GG 1081 ---------- -------G-A U-NA-CAGU- A-CCG-N-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GU -G|-GU-UG- 1261 A-UU-AAG|U NUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUGC A-AAC-UGGU C-AACUA-GA GUA-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-CGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CCCCCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -GG-AA---- ---------- 1681 -(-UU-NG)- ---------- ---------- ---------- -------UUC -CUUAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UG|--- ---------U ---CNNG--- -AA----UCC 1981 -CUG-A--(- GAGA-)-UUG -G-GGAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GG-------- ----AA---| CCN-NN-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGN NA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UN ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-CU CNU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CN-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 NCNCCGCCC- GUC-ACA--- --CCA-UGGG A--AU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -NNNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-UA-CC A-CGGU-GGG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN45 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN45.. ACCESSION No information KEYWORDS No information. SOURCE clone UN45. ORGANISM clone UN45. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63618 BASE COUNT 81 a 60 c 93 g 57 t 4085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GU -G|-GU-CA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-G)A-CCU -GG-G-AAU- 1321 -GGCA-UUUN A-GAC-UGCA C-GACUA-GA GGA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCU--AU-AA CUGACA-CUC AU-G------ -------CA- C--AAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-GC-CU--A 1621 AAC-G-AUGU C--AA-CU.. ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crb.violac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromobacterium violaceum. ACCESSION No information KEYWORDS No information. SOURCE Chromobacterium violaceum. ORGANISM Chromobacterium violaceum. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22510 BASE COUNT 360 a 334 c 473 g 292 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAU -GC-GUCGG- A-A--UGU-A C-CGUG---U -AAUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCN-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUNG--C- G--UUA---- 661 ----UACG-- AGC---A-|G CCGAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAG-- GA-A-AU-CC --GGC-UGG( U----UAAUA -----N---) CCGG-CG-GG 1081 ---------- -------G-A U-GA-CAGU- A-CCU-G-AA G-AA--UNAG ---------C 1141 -ACCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGCA-UUGG A-GAC-UGCA C-AGCUA-GA GUG-----CG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-GU---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------AUC -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CUU 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-NG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-AG -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GAG- UU-UC-ACCA -GAA-G-UGG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-UA-CC A-CGGU-GGG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vit.sterc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vitreoscilla stercoraria. ACCESSION No information KEYWORDS No information. SOURCE Vitreoscilla stercoraria. ORGANISM Vitreoscilla stercoraria. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06174 BASE COUNT 385 a 325 c 458 g 316 t 2892 others ORIGIN 1 .......... .......... .......... ....AACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUCGG- A-A--CGU-A C-CAAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----UUUG-- AGC---G-|G CCGAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GC --UUU-UGG( C----UAAUA -----U---) CCAA-GA-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GC-C CC-GAG-C(- UC-A)A-CUU -GG-G-ACG- 1321 -UGCA-UUUG A-AAC-UGGA U-AACUA-GA GUG-----UG U-NN-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA C--AA-UU-- -------A|G -CU-GU-UGG -GA-GAU--- ---------- 1681 -(-UA-AA)- ---------- ---------- -A-------- -------GCU -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-AU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vit.sterco 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vitreoscilla stercoraria str. VT1. ACCESSION No information KEYWORDS No information. SOURCE Vitreoscilla stercoraria str. VT1. ORGANISM Vitreoscilla stercoraria. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22519 isolate_name= VT1 BASE COUNT 385 a 326 c 456 g 312 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACAUA AGAGUU(U-G N)N-CNN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUCGG- A-A--CGU-A C-CAAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----UUUG-- AGC---G-|G CCGAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GC --UUU-UGG( C----UAAUA -----U---) CCAA-GA-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GC-C CC-GAG-C(- UC-A)A-CUU -GG-G-ACG- 1321 -UGCA-UUUG A-AAC-UGGA U-AACUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA C--AA-UU-- -------A|G -CU-GU-UGG -GA-GAU--- ---------- 1681 -(-UA-AA)- ---------- ---------- -A-------- -------GCU -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-A--(- GAGA-)-CGG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-AU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.1.2 KIN.KINGAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.1.2 KIN.KINGAE_SUBGROUP. ORGANISM 2.14.2.1.2 KIN.KINGAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1041 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1041. str. SBR1041. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1041. str. SBR1041. ORGANISM str. SBR1041. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84484|g871605 isolate_name= SBR1041 BASE COUNT 95 a 89 c 135 g 77 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------UC-- C(-GAAA-)G -GAUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------UG 541 AG-------- -)-AAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---CUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria canis str. H6 ATCC 14687 (T). ACCESSION No information KEYWORDS No information. SOURCE Neisseria canis str. H6 ATCC 14687 (T). ORGANISM Neisseria canis. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14687 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06170 isolate_name= H6 BASE COUNT 369 a 335 c 469 g 308 t 2895 others ORIGIN 1 .......... .......... .......... ....GAACUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------UC-- C(-GAAA-)G -GAUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------UG 541 AG-------- -)-AAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GC --UCU-GGG( U----UAAUA -----C---) CCUG-GA-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GG-CA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UGC -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-A--(- GAGA-)-CGG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-NN-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CU-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kin.oralis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kingella oralis str. UB-38 CCUG 30450. ACCESSION No information KEYWORDS No information. SOURCE Kingella oralis str. UB-38 CCUG 30450. ORGANISM Kingella oralis. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06164 Former RDP Sids: Kin.orale isolate_name= UB-38 NB: former name Kingella orale (misnaming) BASE COUNT 378 a 326 c 454 g 316 t 2902 others ORIGIN 1 .......... .......... .......... ....AACAUN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAU -GC-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------UG 541 AG-------- -)-AAG---- ---------- ----GAAA-- ---GUGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --AUA-GUG( U----UAAUA -----C---) CAUU-AU-CU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UU- 1261 A-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GAG-C(- UY-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUU G-AAC-UGGU A-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CAU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -UCC-A--(- GAGA-)-CGG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-UA-CC A-CGGU-AUG UUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kin.kingae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kingella kingae. ACCESSION No information KEYWORDS No information. SOURCE Kingella kingae. ORGANISM Kingella kingae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22517 ATCC 23330 (T) = NCTC 10529 BASE COUNT 386 a 319 c 447 g 315 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACAUA AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AGCC AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------UG 541 AG-------- -)-AAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-U-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-NA 1021 --GG-GAA-- GA-A-AA-GG --UUG-AUG( C----UAAUA -----U---) CAUU-AA-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 G-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUU G-AAC-UGGC U-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GAG 1981 -AGU-A--(- GAGA-)-UAC -U-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-NGG- GG-AU-ACCA -GAA-G-UAG 3121 A-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-UU-UA-CC A-CGGU-AUN UUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kin.kinga2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kingella kingae. ACCESSION No information KEYWORDS No information. SOURCE Kingella kingae. ORGANISM Kingella kingae. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74902 NCTC 10529 = ATCC 23330 (T) BASE COUNT 196 a 143 c 228 g 152 t 3657 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------UG 541 AG-------- -)-AAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-U-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --UUG-AUG( C----UAAUA -----U---) CAUU-AA-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 G-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUU G-AAC-UGGC U-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GA...... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.1.3 NIS.GONORRHOEAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.1.3 NIS.GONORRHOEAE_SUBGROUP. ORGANISM 2.14.2.1.3 NIS.GONORRHOEAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eik.corro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eikenella corrodens. ACCESSION No information KEYWORDS No information. SOURCE Eikenella corrodens. ORGANISM Eikenella corrodens. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22515 BASE COUNT 367 a 321 c 444 g 301 t 2943 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACAUA AGAGNU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( C----UNAUA -----C---) CACU-UU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUA.....( .......... ..CGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGA U-AGCUA-GA GUG-----UG U-NA-NAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAAACUC -AAA-GGANU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -UUC-A--(- GAGA-)-CGG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCN-CN-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-N(N 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACNNCCC- GUC-ACA--- --CNN-UGGG A--GU-NGG- GG-AU-NCCA -GAA-G-CAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UG-CC A-CGGU-AUN CU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eik.corrod 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eikenella corrodens. ACCESSION No information KEYWORDS No information. SOURCE Eikenella corrodens. ORGANISM Eikenella corrodens. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22512 BASE COUNT 374 a 328 c 442 g 303 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACAUA AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----NA-U-- CCG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-NNA UCCA|-GCCA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( C----UAAUA -----C---) CACU-UU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUNC-GUG( CCN--GCNGC C........) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UN-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGA U-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CCU 1981 -UCC-A--(- GAGA-)-CGG -A-AGNN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACNNCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-CAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UG-CC A-CGGU-AUG CUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eik.corro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eikenella corrodens. ACCESSION No information KEYWORDS No information. SOURCE Eikenella corrodens. ORGANISM Eikenella corrodens. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22514 BASE COUNT 355 a 319 c 428 g 290 t 2984 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CN-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUNG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AA|----CU N--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( C----UAAUA -----C---) CACU-UU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCANC CNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGA U-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CN--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAN-AUCGA C|C|G-CCU- G-GGGNGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUN ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -UUC-A--(- GAGA-)-CGG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-N-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACNNCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-CAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UG-CC A-CGGU-NUG CUU-CA-UG- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eik.corro1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eikenella corrodens. ACCESSION No information KEYWORDS No information. SOURCE Eikenella corrodens. ORGANISM Eikenella corrodens. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22513 BASE COUNT 364 a 319 c 435 g 298 t 2960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACAUN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GNN-A -UGC-UN--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NNUAG-UG (--CU----- ---------- ---------- 241 --------NG -)CA-CUNCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAU -AU-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -NA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-GACAAU-- GG-GG-(GCA A)-CCN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( C----UNAUA -----C---) CACN-NU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACU......( .......... ........A) U-A-C-GUAG |-GGUN-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCG-UUCU G-AAC-UGGA U-AGCUN-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUN ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -UUC-A--(- GAGA-)-CGG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CNN-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UN-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-N-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUNGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-N-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 NCNCNNNNC- GUC-ACA--- --CCA-UNGG N--GU-NGG- GG-AU-ACCA -GAA-G-CAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UG-CC A-CGGU-NUN CUU-CA-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eik.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eikenella sp. str. UB-204 CCUG 28283. ACCESSION No information KEYWORDS No information. SOURCE Eikenella sp. str. UB-204 CCUG 28283. ORGANISM Eikenella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov . JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06165 isolate_name= UB-204 BASE COUNT 379 a 335 c 463 g 308 t 2891 others ORIGIN 1 .......... .......... .......... ....AACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CGAG---C -AGUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACA---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCUUG--C- G--CUG---- 661 ----UUUG-- AGC---G-|G CCGAU----- -AA|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UC 1021 --GG-GAA-- GA-A-AA-GC --GCA-GUG( U----UAAUA -----C---) CAUU-GC-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGA U-AGCUA-GA GUA-----UG U-NA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CCU 1981 -UCC-A--(- GAGA-)-CGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-CAG 3121 G-UAG-G-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGU-C-C G-CU-UG-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sim.muelle 4376 bp RNA RNA 02-JUL-1998 DEFINITION Simonsiella muelleri. ACCESSION No information KEYWORDS No information. SOURCE Simonsiella muelleri. ORGANISM Simonsiella muelleri. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of some purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59071 BASE COUNT 388 a 321 c 453 g 309 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UNGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AUA -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--CAG--- 601 --(------- ---GCAA--- ---)------ ----CUG--| -CCUCG--C- G--UUA---- 661 ----UUUG-- AGC---G-|G CCAAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----NA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGUC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --CAU-UUG( C----UAAUA -----U---) CAGA-UG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC NNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUU G-AAC-UGGG U-AGCUA-GA GUG-----UG N-CA-AAAGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AG-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CN-GU-UGG -GG-CA---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------UGC -CUUAG-UAG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -CUC-A--(- GAGA-)-CGG -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UA-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-ACYA -GAA-G-UAG 3121 G-UAG-A-AU -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-U-C G-CU-UA-CC A-CGGU-AUG CUU-CA-NG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.denit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria denitrificans str. M37 ATCC 14686. ACCESSION No information KEYWORDS No information. SOURCE Neisseria denitrificans str. M37 ATCC 14686. ORGANISM Neisseria denitrificans. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14686 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06173|g175560 isolate_name= M37 BASE COUNT 381 a 331 c 447 g 308 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACRAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-NA 1021 --GG-GAA-- GA-A-AA-GG --GAU-UUG( C----UAAUA -----C---) CGAA-UC-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GNANC CGCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CN-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GG-UA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UAC -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -CCC-A--(- GAGA-)-CGG -G-AGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C N-CU-UA-CC A-CGGU-AUA CUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.dentri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria denitrificans str. M37 ATCC 14686. ACCESSION No information KEYWORDS No information. SOURCE Neisseria denitrificans str. M37 ATCC 14686. ORGANISM Neisseria denitrificans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14686 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35020 isolate_name= M37 BASE COUNT 380 a 331 c 448 g 308 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACGAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GU-NN 1021 --GG-GAA-- GA-A-AA-GG --GAU-UUG( C----UAAUA -----C---) CGAA-UC-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GNANC CGCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CN-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GG-UA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UAC -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCU 1981 -CCC-A--(- GAGA-)-CGG -G-AGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C N-CU-UA-CC A-CGGU-AUA CUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kin.denit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kingella denitrificans str. UB-294 CCUG 28284. ACCESSION No information KEYWORDS No information. SOURCE Kingella denitrificans str. UB-294 CCUG 28284. ORGANISM Kingella denitrificans. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06166 isolate_name= UB-294 BASE COUNT 377 a 332 c 460 g 309 t 2898 others ORIGIN 1 .......... .......... .......... .....ACAUN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUUGG- A-A--UGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUNG--C- G--CUA---- 661 ----UUUG-- AGC---A-|G CCAAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( C----UAAUA -----C---) CACU-UU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-CGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kin.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kingella denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Kingella denitrificans. ORGANISM Kingella denitrificans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22516 ATCC 33394 = NCTC 10995 (T) BASE COUNT 377 a 328 c 454 g 307 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~ACAUA AGAGUU(U-G A)N-CCN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GNG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUUGG- A-A--UGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUUG-- AGC---A-|G CCAAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-NA 1021 --GG-GAA-- GA-A-AA-GG --GAA-GUG( U----UAAUA -----C---) CACU-UU-UU 1081 ---------- -------G-U U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-CGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.elong2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria elongata. ACCESSION No information KEYWORDS No information. SOURCE Neisseria elongata. ORGANISM Neisseria elongata. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06171|g175558 BASE COUNT 373 a 333 c 458 g 307 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~CAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-AG --GAG-CGG( U----UAAUA -----C---) CCGN-UU-CU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCNUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CCU 1981 -UUC-A--(- GAGA-)-CGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAAAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-NCCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.elonga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria elongata.. ACCESSION No information KEYWORDS No information. SOURCE Neisseria elongata. ORGANISM Neisseria elongata. REFERENCE 1 AUTHORS Dewhirst,F. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 373 a 333 c 458 g 307 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~CAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------AU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-UA 1021 --GG-GAA-- GA-A-AA-AG --GAG-CGG( U----UAAUA -----C---) CCGN-UU-CU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCNUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CCU 1981 -UUC-A--(- GAGA-)-CGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAAAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- GG-AU-NCCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-AC.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.animal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria animalis str. NA1 ATCC 19573. ACCESSION No information KEYWORDS No information. SOURCE Neisseria animalis str. NA1 ATCC 19573. ORGANISM Neisseria animalis. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19573 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06172 isolate_name= NA1 BASE COUNT 355 a 332 c 455 g 309 t 2925 others ORIGIN 1 .......... .......... .......... ........UA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -AU-AUUGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UN 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --GAG-AUG( C----UAAUA -----C---) CAUU-UC-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCU-G-AA G-AA--UNAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCANN CGCGGNN-A) U-N-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-N)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUN-GCA(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC NU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-A--(- GAGA-)-CGG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CU-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C NA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CNU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CNGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U UCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCNAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.weaver 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria weaveri. ACCESSION No information KEYWORDS No information. SOURCE Neisseria weaveri. ORGANISM Neisseria weaveri. REFERENCE 1 AUTHORS Andersen,B.M., Steigerwalt,A.G., O'Connor,S.P., Hollis,D.G., Weyant,R.S., Weaver,R.E. and Brenner,D.J. TITLE Neisseria weaveri sp. nov., formerly CDC group M-5, a gram-negative bacterium associated with dog bite wounds JOURNAL J. Clin. Microbiol. 31, 2456-2466 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10738 BASE COUNT 382 a 332 c 467 g 306 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUUGG- A-A--CGU-A C-CGGA---G -UAAU-GGGG 421 -GAU-AA-CU U--------- ------GC-- C(-GAAA-)G -GUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCAAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --UUG-UGG( C----UAAUA -----U---) CCAU-GA-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-G--(- GAGA-)-CGG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.flaves 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria flavescens str. N155 ATCC 13120 (T). ACCESSION No information KEYWORDS No information. SOURCE Neisseria flavescens str. N155 ATCC 13120 (T). ORGANISM Neisseria flavescens. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13120 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06168 Former RDP Sids: Nis.flave2 isolate_name= N155 BASE COUNT 377 a 327 c 456 g 312 t 2904 others ORIGIN 1 .......... .......... .......... ....AACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CGAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCNUG--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --CUG-UUG( C----UAAUA -----U---) CGAC-AG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C C--GGG-C(- UC-A)A-CCC -GG-N-NAC- 1321 -UGCG-UUCU G-AAC-UGGG U-AACUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-G--(- GAGA-)-CGG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC RA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.sicca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria sicca.. ACCESSION No information KEYWORDS No information. SOURCE Neisseria sicca. ORGANISM Neisseria sicca. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02903|g455046 legacy_attribute= clinical isolate BASE COUNT 97 a 95 c 116 g 80 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.macaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria macacae str. M-740 ATCC 33926 (T). ACCESSION No information KEYWORDS No information. SOURCE Neisseria macacae str. M-740 ATCC 33926 (T). ORGANISM Neisseria macacae. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33926 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06169 isolate_name= M-740 BASE COUNT 328 a 331 c 449 g 297 t 2971 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NNAC-GC-- UGGC-GGC-A -UGC-UU--U NCNC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -AU-AUCGG- A-A--CGU-A C-CGAG---C -AGUG-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AUA---- ---------- ---------- ---------- ---UUC-(-- --------UG 541 AG-------- -)-GAA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCUUG--C- G--CUG---- 661 ----UUUG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUN-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --GCG-GGG( U----GAAUA -----C---) CCCN-GU-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UNAG ---------C 1141 -ACCGGCN-N ACUNC-GUG( CCN--GCNGC CGCGGNN-A) U-N-C-GUAG |-GGUG-C-- 1201 NAG-CGUUNA UC-GGAAUUN -CU-GGGC|G UAAA-GCGG- GCG-CNG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-N)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUN-GCA(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC NU-G------ -------CC- C-GAAA-GC- GU-GGG-UN- 1561 GC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--GA-UU-- -------A|G -CU-GU-UGG -GC-AG---- ---------- 1681 -(CNU-GA)- ---------- ---------- ---------- -------CUG -CUUAG-UAG 1741 CG--AA---- --GC-(UNA- ---C)G-CG- UNAA-AUCGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAAACUC -NAA-GGAAU UN-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUN-CC UNG-UC-UUN ACN-UG|--- ---------U ---ACGG--- -AA----CCC 1981 -UCC-A--(- GAGA.).... .......... UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACN |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C NA)-GCC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CNU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCN-CN-C GUC--AUACN AUGGU-C-GG -UA--CNGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-NAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCNAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-N G-CU-UA-CC A-CGGU-AUG CUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.pharyn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria pharyngis. ACCESSION No information KEYWORDS No information. SOURCE Neisseria pharyngis. ORGANISM Neisseria pharyngis. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74893 BASE COUNT 191 a 153 c 240 g 147 t 3645 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGAG---C -AGUG-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AUA---- ---------- ---------- ---------- ---UUC-(-- --------UG 541 AG-------- -)-GAA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCUUG--C- G--CUG---- 661 ----UUUG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --ACA-GGG( U----UAAUA -----C---) CCCU-GU-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CC- C-GAAA-GC- GU-GG..... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.lacmic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria lactamica. ACCESSION No information KEYWORDS No information. SOURCE Neisseria lactamica. ORGANISM Neisseria lactamica. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74901 NCTC 10617 (T) = ATCC 23970 BASE COUNT 178 a 157 c 240 g 137 t 3664 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGGG---C -AGUG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---UUC-(-- --------UG 541 AG-------- -)-GAA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(CCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CG 1021 --GG-GAA-- GA-A-AA-GG --UCG-GGG( U----UAAUA -----C---) CCUC-GG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--UAAG ---------C 1141 -ACCGGUU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAU- 1321 -UGCG-UUCU G-AAC-UGGG U-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG.... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.menin4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria meningitidis str. serotype A ATCC 13077. ACCESSION No information KEYWORDS No information. SOURCE Neisseria meningitidis str. serotype A ATCC 13077. ORGANISM Neisseria meningitidis. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13077 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02901|g455044 ATCC 13077 = NCTC 10025 (T) isolate_name= serotype A isolate_name= M 1027 BASE COUNT 91 a 95 c 107 g 74 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.menin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria meningitidis str. serotype A NCTC 10025 (T). ACCESSION No information KEYWORDS No information. SOURCE Neisseria meningitidis str. serotype A NCTC 10025 (T). ORGANISM Neisseria meningitidis. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10025 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74900 NCTC 10025 (T) = ATCC 13077 isolate_name= serotype A isolate_name= M 1027 BASE COUNT 184 a 157 c 234 g 141 t 3660 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--U ACAC-AUGCA A-GUC-GGCC 121 ---GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UG 541 AG-------- -)-AGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --CUG-UUG( C----UAAUA -----U---) CAGC-GG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUC-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAC--AA-CA CUGACG-UUC AU........ .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.mening 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria meningitidis str. 418. ACCESSION No information KEYWORDS No information. SOURCE Neisseria meningitidis str. 418. ORGANISM Neisseria meningitidis. REFERENCE 1 AUTHORS ,C. and Olcen,P. Raadstroem,P., Backman,A., Qian,N., Kragsbjerg,P., Paahlson TITLE assay for simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy Detection of bacterial DNA in cerebrospinal fluid by an JOURNAL J. Clin. Microbiol. 32, 2738-2744 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22776 isolate_name= 418 BASE COUNT 248 a 230 c 307 g 201 t 3390 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUC-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAC--AA-CA CUGACG-UUC AU-G------ -------CC- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CCU-GA)- ---------- ---------- ---------- -------UUG -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-G--(- GAGA-)-CGG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.gonor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria gonorrhoeae subsp. kochii NRL 32895. ACCESSION No information KEYWORDS No information. SOURCE Neisseria gonorrhoeae subsp. kochii NRL 32895. ORGANISM Neisseria gonorrhoeae. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02900|g455043 BASE COUNT 92 a 94 c 112 g 77 t 4001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.gonor1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria gonorrhoeae str. B 5025 NCTC 8375. ACCESSION No information KEYWORDS No information. SOURCE Neisseria gonorrhoeae str. B 5025 NCTC 8375. ORGANISM Neisseria gonorrhoeae. REFERENCE 1 AUTHORS Rossau,R., Heyndrickx,L. and van Heuverswyn,H. TITLE Nucleotide sequence of a 16s ribosomal RNA gene from Neisseria gonorrhoeae JOURNAL Nucleic Acids Res. 16, 6227-6227 (1988) STANDARD No information COMMENTS Organism information Culture collection: NCTC 8375 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X07714 NCTC 8375 = ATCC 19424 (T) isolate_name= B 5025 BASE COUNT 380 a 357 c 492 g 315 t 2832 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGGG---U -AGCG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UG 541 AG-------- -)-AGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --CUG-UUG( C----CAAUA -----U---) CGGC-GG-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUC-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------UC- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UU-UUG ACA-UG|--- ---------U ---GCGG--- -AA----UCC 1981 -UCC-G--(- GAGA-)-CGG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.gonorr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria gonorrhoeae str. 2013. ACCESSION No information KEYWORDS No information. SOURCE Neisseria gonorrhoeae str. 2013. ORGANISM Neisseria gonorrhoeae. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34130 isolate_name= 2013 BASE COUNT 365 a 334 c 460 g 294 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGGG---U -AGCG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UG 541 AG-------- -)-AGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UNCG--- ---)------ -----GG--| -CCNUG--C- G--CUA---- 661 ----UCNG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUN-G---UN 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGN-NAUUUU G-GACAAU-- GG-GC-(GCN A)-GCC-UGA UCCA|-GCCA UGCN-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --CCG-UUG( C----CAAUA -----U---) CGGC-GG-CC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CNA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-N CN-GGG-C(- UC-A)A-CCC -GG-N-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUC-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------UC- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUN-NA)- ---------- ---------- ---------- -------UUG -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-A-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UU-UUG ACA-UG|--- ---------U ---GCGG--- -AA----UCC 1981 -UCC-G--(- GAGA-)-CGG -A-GNAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC--(G 2881 -CGA)-GCG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-NGN-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GN-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.cinere 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria cinerea. ACCESSION No information KEYWORDS No information. SOURCE Neisseria cinerea. ORGANISM Neisseria cinerea. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02899|g455042 BASE COUNT 92 a 92 c 112 g 79 t 4001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UAG 3121 G-UAG-G-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.polsac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria polysaccharea. ACCESSION No information KEYWORDS No information. SOURCE Neisseria polysaccharea. ORGANISM Neisseria polysaccharea. REFERENCE 1 AUTHORS Dewhirst,F.E., Chen,C.-K.C., Paster,B.J. and Zambon,J.J. TITLE Phylogeny of species in the family Neisseriaceae isolated from human dental plaque and description of Kingella oralis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 490-499 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06167 Former RDP Sids: Nis.polys2 ATCC 43768 (T) = CIP 100113 = NCTC 11858 BASE COUNT 370 a 336 c 458 g 306 t 2906 others ORIGIN 1 .......... .......... .......... .....ACAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-A C-CGAG---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------AU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UG 541 AG-------- -)-AGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUCG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----NA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-CU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --CUG-UUG( C----UAAUA -----U---) CAGC-GG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCNGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGG- GCG-CAG-AC -G|-GU-UA- 1261 C-UU-AAG|C AGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCC -GG-N-AAC- 1321 -UGCG-UUCU G-AAC-UGGG U-GACUC-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-UUC AU-G------ -------CC- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -CU-GU-UGG -GC-AA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UUG -CUUGG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UCC-A--(- NAGA-)-CGG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UGG 3121 G-UAG-G-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGU-C-C G-CU-UA-CC A-CGGU-AUG CUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.polsa3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria polysaccharea. ACCESSION No information KEYWORDS No information. SOURCE Neisseria polysaccharea. ORGANISM Neisseria polysaccharea. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02902|g455045 Former RDP Sids: Nis.polys3 ATCC 43768 (T) = CIP 100113 = NCTC 11858 BASE COUNT 93 a 93 c 117 g 79 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CN-G-CCG --GU(-GA-C NA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACN--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-AUN- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GG-AU-ACCA -GAA-G-UGG 3121 G-UAG-G-AU -AA-CN---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGU-C-C G-CU-UA-CC A-CNGU-AUG NUU-CA-UG- ACU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UNGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2 RUB.GELATINOSUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2 RUB.GELATINOSUS_GROUP. ORGANISM 2.14.2.2 RUB.GELATINOSUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.1 RAL.PICKETTII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.1 RAL.PICKETTII_SUBGROUP. ORGANISM 2.14.2.2.1 RAL.PICKETTII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syzygi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syzygii str. R001. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syzygii str. R001. ORGANISM Pseudomonas syzygii. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28237|g881536 isolate_name= R001 BASE COUNT 372 a 329 c 455 g 289 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- ---CCC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cepacia 4376 bp RNA RNA 10-FEB-1994 DEFINITION Burkholderia cepacia. str. G4; 16S ribosomal RNA. ACCESSION L28675 KEYWORDS 16S ribosomal RNA. SOURCE Burkholderia cepacia. str. G4. ORGANISM Burkholderia cepacia. REFERENCE 1 (bases 1 to 1337) AUTHORS Zhou,J., Weller,R. and Tiedje,J. TITLE bacteria as determined by analysis of 16S ribosomal RNA gene sequences The phylogeny of aerobic and microaerophilic BTEX degrading JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L28675 BASE COUNT 340 a 312 c 423 g 260 t 3041 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ UGAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU--G (--CU----- ---------- ---------- 241 --------UG -)CA-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-C- --CUU-GGC( UC---UAAUA -----C---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUC GG-GAGU--- GC-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-C-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-C-C- CA-ACC-C(N 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UNCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CG-UG- AAU~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syzygi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syzygii str. R058. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syzygii str. R058. ORGANISM Pseudomonas syzygii. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28238|g881537 isolate_name= R058 BASE COUNT 372 a 328 c 455 g 289 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- -N--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syzygii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syzygii.. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syzygii. ORGANISM Pseudomonas syzygii. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70347 BASE COUNT 72 a 67 c 101 g 51 t 4085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GU-GGG- GG--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-G ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola28 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R142. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R142. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28233|g881535 Former RDP Sids: Bur.sola28 isolate_name= R142 NB: former name Burkholderia solanacearum BASE COUNT 373 a 329 c 455 g 289 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R780. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R780. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28232|g881534 Former RDP Sids: Bur.sola27 geog_source= Indonesia biol_source= potato, biovar N2 isolate_name= R780 NB: former name Burkholderia solanacearum BASE COUNT 370 a 325 c 449 g 287 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.R233 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. R233. str. R233. ACCESSION No information KEYWORDS No information. SOURCE str. R233. str. R233. ORGANISM str. R233. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28235|g881539 isolate_name= R233 BASE COUNT 374 a 330 c 458 g 293 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UU -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.R506 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. R506. str. R506. ACCESSION No information KEYWORDS No information. SOURCE str. R506. str. R506. ORGANISM str. R506. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28234|g881538 isolate_name= R506 BASE COUNT 370 a 324 c 451 g 289 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UU -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.R223 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. R223. str. R223. ACCESSION No information KEYWORDS No information. SOURCE str. R223. str. R223. ORGANISM str. R223. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28236|g881540 isolate_name= R223 BASE COUNT 373 a 327 c 456 g 290 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UU -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGACC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum.. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70346 Former RDP Sids: Ps.solana6 legacy_attribute= biovar:group 4 NB: former name Pseudomonas solanacearum BASE COUNT 73 a 68 c 100 g 51 t 4084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.picket 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia pickettii str. K-288 ATCC 27511. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia pickettii str. K-288 ATCC 27511. ORGANISM Ralstonia pickettii. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., Hashimoto,Y., Ezaki,T. and Arakawa,M. TITLE Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27511 Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55018 Former RDP Sids: Bur.picket ATCC 27511 = GIFU 11738 = EY 3254 = NCTC 11149 (T) isolate_name= K-288 NB: former name Burkholderia pickettii BASE COUNT 353 a 295 c 426 g 273 t 3029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GAGAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-GG --CUC-UGG( U----UAAUA -----C---) CUGG-GG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)G-UG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B708 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B708. str. B708. ACCESSION No information KEYWORDS No information. SOURCE str. B708. str. B708. ORGANISM str. B708. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13140|g495591 isolate_name= B708 BASE COUNT 179 a 166 c 213 g 156 t 3662 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .........U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -NAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- UA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGGG- AGC---G-|G CCGAU----- -GU|----U. .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 ..G-GGUUUU G-CGCGAU-- -G-GC-(GAA A)-GCC-GGA UCCG|-GCGG UGCC-GC-GU 961 G-U-GU-G-A A-GAA--U-U GC(--UU-CC --)GG-UUGU GAA--GCGC| UUUU-GN-CC 1021 --GG-AAA-- GA-A-AU-UC --CUC-UAG( U----UGAUG -----C---) CUGU-CU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-AA G-AA--UNAA ---------U 1141 -ACCUACU-A ACUAC-GU.( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... ...UGGAGG- AAUA-CCCA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUNC 1801 GGU-C---(G CAA)---G-U .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... ......UACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.picke3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia pickettii str. E1625. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia pickettii str. E1625. ORGANISM Ralstonia pickettii. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70348 Former RDP Sids: Ps.picket3 Bur.picke3 legacy_attribute= biovar:group 1 isolate_name= E1625 NB: former name Pseudomonas -> Burkholderia pickettii BASE COUNT 78 a 64 c 96 g 56 t 4082 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.picke5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia pickettii str. PKO1. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia pickettii str. PKO1. ORGANISM Ralstonia pickettii. REFERENCE 1 AUTHORS Zhou,J., Chee-Sanford,J.C., Weller,R. and Tiedje,J.M. TITLE The phylogeny of five well-studied, aerobic, toluene-degrading bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37367|g567855 Former RDP Sids: Bur.picke5 isolate_name= PKO1 NB: former name Burkholderia picketti BASE COUNT 354 a 301 c 426 g 278 t 3017 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-GG --CUC-UGG( U----UAAUA -----C---) CUGG-GG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-UCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(CUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUUC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0711 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0711. str. B0711. ACCESSION No information KEYWORDS No information. SOURCE str. B0711. str. B0711. ORGANISM str. B0711. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12227|g529306 geog_source= Savannah R. near Aiken,SC, 259 m deep biol_source= Middendorf aquifer isolate_name= B0711 BASE COUNT 226 a 189 c 253 g 179 t 3529 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ..CGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 NU-GC-UGCA UG|N-CUN-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUNU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-N-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAANC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-N CCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G42 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G42.. ACCESSION No information KEYWORDS No information. SOURCE clone G42. ORGANISM clone G42. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91294|g987042 BASE COUNT 90 a 72 c 108 g 74 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.picke4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia pickettii str. K 550 ATCC 27512. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia pickettii str. K 550 ATCC 27512. ORGANISM Ralstonia pickettii. REFERENCE 1 AUTHORS Hayward,A.C. Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and TITLE rRNA sequences Phylogenetic studies on rRNA group II Pseudomonas using 16S JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27512 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67042 Former RDP Sids: Ps.picket2 Bur.picke4 isolate_name= K 550 NB: former name:Pseudomonas -> Burkholderia -> Ralstonia pickettii BASE COUNT 374 a 309 c 446 g 287 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-GG --CUC-UGG( U----UAAUA -----C---) CUGG-GG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 ..UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-AGG-G-C G-AG-GA-CC A-CGGU-AGG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCNGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.picke2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia pickettii str. K-288 NCTC 11149 (T). ACCESSION No information KEYWORDS No information. SOURCE Ralstonia pickettii str. K-288 NCTC 11149 (T). ORGANISM Ralstonia pickettii. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11149 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70349 Former RDP Sids: Ps.pickett Bur.picke2 NCTC 11149 (T) = GIFU 11738 = EY 3254 = ATCC 27511 isolate_name= K-288 NB: former name Pseudomonas -> Burkholderia pickettii BASE COUNT 79 a 63 c 95 g 57 t 4082 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B704 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B704. str. B704. ACCESSION No information KEYWORDS No information. SOURCE str. B704. str. B704. ORGANISM str. B704. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13138|g495590 isolate_name= B704 BASE COUNT 60 a 62 c 77 g 51 t 4126 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .UGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG GUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M, Hayward,C, Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27983|g881488 Former RDP Sids: Bur.sola10 NB: former name Burkholderia solanacearum BASE COUNT 383 a 336 c 464 g 303 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UNCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUC-UGG( U----UAAUA -----C---) CUGG-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU--GGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola29 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. H1. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. H1. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Stolz,J.F., Follis,P., Floro,G., Donofrio,R., Buzzelli,J.A. and Griffin,W.M. TITLE Aerobic and anaerobic biodegradation of the methyl esterified fatty acids of soy diesel in freshwater and soil environments JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16144|g562126 Former RDP Sids: Ps.spH1 isolate_name= H1 NB: former name Pseudomonas sp. BASE COUNT 371 a 311 c 446 g 281 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... CCG|-GCGAA GGUG-GCGA- 361 -A-C--GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAAC)G -ACUA-G--C UAAUACCGGC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- -------UCG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--C----- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--A- U-CGUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- GGU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA-GACAC| UUUU-GU-CC 1021 --GG-GAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAC-GGUUAA CU-GGAAUUA -CU-GGGC|G UAAA-CGGU- GCC-GAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UCGA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 GG-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- -------UUC -CUUAG-UAA 1741 CG--UA---- --CU-(GAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CG--- 1861 --A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U----G-U |GU-C(-GUG A)GAGUGU-U 2221 GG-G-(UUAA -GU)-CCCG- AA-------- C-AG-C-GCG AACCC-UU-G |-UC--UCU- 2281 AG--UUCG-U A--C------ ---------- ---------- ----(----A ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-C-G --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C -UUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- UAAUGA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCGGC--UG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAGGG-G-C --AU-UA-CC A-CGGU-A-G GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Hayward,A.C. Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and TITLE rRNA sequences Phylogenetic studies on rRNA group II Pseudomonas using 16S JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67041 Former RDP Sids: Ps.solana3 legacy_attribute= biovar:biovar 3 NB: former name Pseudomonas solanacearum BASE COUNT 372 a 326 c 450 g 290 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU UAA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-A-G GUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Hayward,A.C. Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and TITLE rRNA sequences Phylogenetic studies on rRNA group II Pseudomonas using 16S JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67040 Former RDP Sids: Ps.solana4 legacy_attribute= biovar:biovar 4 NB: former name Pseudomonas solanacearum BASE COUNT 370 a 325 c 451 g 288 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU UAA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-A-G GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M, Hayward,C, Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27985|g881490 Former RDP Sids: Bur.sola12 NB: former name Burkholderia solanacearum BASE COUNT 372 a 326 c 453 g 290 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28220|g881522 Former RDP Sids: Bur.sola15 NB: former name Burkholderia solanacearum BASE COUNT 378 a 332 c 457 g 295 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M, Hayward,C, Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27986|g881491 Former RDP Sids: Bur.sola13 NB: former name Burkholderia solanacearum BASE COUNT 373 a 326 c 452 g 290 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R791. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R791. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M, Hayward,C, Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27987|g881492 Former RDP Sids: Bur.sola14 isolate_name= R791 NB: former name Burkholderia solanacearum BASE COUNT 375 a 328 c 452 g 290 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UNCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R288. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R288. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M, Hayward,C, Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27984|g881489 Former RDP Sids: Bur.sola11 isolate_name= R288 NB: former name Burkholderia solanacearum BASE COUNT 375 a 328 c 452 g 290 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UNCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CAC-UGG( U----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CG-U-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum.. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70344 Former RDP Sids: Ps.solana1 legacy_attribute= biovar:group 1 NB: former name Pseudomonas solanacearum BASE COUNT 74 a 68 c 99 g 51 t 4084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and Hayward,A.C. TITLE Phylogenetic studies on rRNA group II Pseudomonas using 16S rRNA sequences JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67035 Former RDP Sids: Ps.solana2 legacy_attribute= biovar:biovar 2 NB: former name Pseudomonas solanacearum BASE COUNT 375 a 329 c 456 g 294 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU UAA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-AU-UA-CC A-CG-C-A-G GUU-CA-UG- ACU---GG-U 3301 G----AGUC- GUA--CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences Analysis of the phylogenetic relationships of strains of JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28224|g881526 Former RDP Sids: Bur.sola19 NB: former name Burkholderia solanacearum BASE COUNT 375 a 328 c 456 g 293 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-G--G-U 3301 G----AGUC- GUA--CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola22 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28227|g881529 Former RDP Sids: Bur.sola22 geog_source= Peru biol_source= potato, biovar N2 NB: former name Burkholderia solanacearum BASE COUNT 372 a 325 c 451 g 289 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. Br150. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. Br150. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28225|g881527 Former RDP Sids: Bur.sola20 isolate_name= Br150 NB: former name Burkholderia solanacearum BASE COUNT 374 a 328 c 454 g 290 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola21 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28226|g881528 Former RDP Sids: Bur.sola21 NB: former name Burkholderia solanacearum BASE COUNT 374 a 328 c 454 g 290 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola25 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R633. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R633. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28230|g881532 Former RDP Sids: Bur.sola25 geog_source= Philippines biol_source= banana (Moko), biovar 1, JEMOK2 isolate_name= R633 NB: former name Burkholderia solanacearum BASE COUNT 374 a 327 c 454 g 291 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GU-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R639. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R639. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28231|g881533 Former RDP Sids: Bur.sola26 geog_source= Philippines biol_source= banana (Bugtok), biovar 1, JEBUG1 isolate_name= R639 NB: former name Burkholderia solanacearum BASE COUNT 374 a 327 c 454 g 291 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GU-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola23 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R483. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R483. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28228|g881530 Former RDP Sids: Bur.sola23 geog_source= Philippines biol_source= banana (Bugtok), biovar 1 isolate_name= R483 NB: former name Burkholderia solanacearum BASE COUNT 372 a 325 c 453 g 291 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GU-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R634. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R634. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28229|g881531 Former RDP Sids: Bur.sola24 geog_source= Philippines biol_source= banana (Moko), biovar 1, JEMOK6 isolate_name= R634 NB: former name Burkholderia solanacearum BASE COUNT 372 a 324 c 451 g 290 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GU-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28222|g881524 Former RDP Sids: Bur.sola17 NB: former name Burkholderia solanacearum BASE COUNT 374 a 327 c 454 g 291 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. R207. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. R207. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28223|g881525 Former RDP Sids: Bur.sola18 isolate_name= R207 NB: former name Burkholderia solanacearum BASE COUNT 372 a 324 c 453 g 292 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- GUAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum.. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70345 Former RDP Sids: Ps.solana7 legacy_attribute= biovar:group 2 NB: former name Pseudomonas solanacearum BASE COUNT 74 a 67 c 99 g 52 t 4084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum.. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Seal,S.E., Jackson,L.A., Young,J.P.W. and Daniels,M.J. TITLE Differentiation of Pseudomonas solanacearum, Pseudomonas syzygii, Pseudomonas pickettii and the Blood Disease Bacterium by partial 16S rRNA sequencing; construction of oligonucleotide primers for sensitive detection by polymerase chain reaction JOURNAL J. Gen. Microbiol. 139, 1587-1594 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70350 Former RDP Sids: Ps.solana5 legacy_attribute= biovar:group 3 NB: former name Pseudomonas solanacearum BASE COUNT 73 a 67 c 100 g 52 t 4084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solana 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Hashimoto,Y., Ezaki,T. and Arakawa,M. Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., TITLE species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Proposal of Burkholderia gen. nov. and transfer of seven JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55011 Former RDP Sids: Bur.solana ATCC 11696 = RIMD 1648002 = NCPPB 325 = EY 2181 NB: reference incorrectly states ATCC as 10696 same organism as Ral.solan2 but not same seq. former name Burkholderia solanacearum BASE COUNT 346 a 298 c 432 g 269 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.sola16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum str. PDDCC1727. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum str. PDDCC1727. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Taghavi,M., Hayward,C., Sly,L.I. and Fegan,M. TITLE Analysis of the phylogenetic relationships of strains of Burkholderia solanacearum, Pseudomonas syzygii and the blood disease bacterium of banana based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 46, 10-15 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28221|g881523 Former RDP Sids: Bur.sola16 isolate_name= PDDCC1727; K60 NB: former name Burkholderia solanacearum BASE COUNT 370 a 324 c 455 g 292 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- -------U-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---UC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CG-C-AGG GUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.solan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia solanacearum. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia solanacearum. ORGANISM Ralstonia solanacearum. REFERENCE 1 AUTHORS Hayward,A.C. Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and TITLE rRNA sequences Phylogenetic studies on rRNA group II Pseudomonas using 16S JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67036 Former RDP Sids: Ps.solanac Bur.solan2 ATCC 11696 = RIMD 1648002 = NCPPB 325 = EY 2181 NB: former name Pseudomonas -> Burkholderia -> Ralstonia solanacearum same organism as Ral.solana but not same seq. BASE COUNT 368 a 323 c 452 g 291 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--U- G--CUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( U----UAAUA -----C---) CUGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -UG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU UAA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-AU-UA-CC A-CG-C-A-G GUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.2 RAL.EUTROPHA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.2 RAL.EUTROPHA_SUBGROUP. ORGANISM 2.14.2.2.2 RAL.EUTROPHA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.eutrop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia eutropha str. 335 (R.Y. Stanier) ATCC 17697 (T). ACCESSION No information KEYWORDS No information. SOURCE Ralstonia eutropha str. 335 (R.Y. Stanier) ATCC 17697 (T). ORGANISM Ralstonia eutropha. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17697 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M32021 Former RDP Sids: Alc.eutrop ATCC 17697 (T) = IMET 10383 = NCIMB 11842 = ICPB 3984 = DSM 531 isolate_name= 335 (R.Y. Stanier) NB: former name Alcaligenes eutrophus BASE COUNT 382 a 340 c 478 g 296 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GNAA--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----CAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-GG --CUC-UGG( U----UAAUA -----C---) CCGG-GG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-GGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAC--GU-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -UUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CA-UG- ACU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.eutro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia eutropha str. 3CB-1. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia eutropha str. 3CB-1. ORGANISM Ralstonia eutropha. REFERENCE 1 AUTHORS Zhou,J.-Z. and Tiedje,J.M. TITLE Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium JOURNAL Mol. Ecol. 4, 613-618 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40413|g695284 Former RDP Sids: Alc.eutro3 isolate_name= 3CB-1 NB: former name Alcaligenes eutrophus BASE COUNT 149 a 116 c 176 g 117 t 3818 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-GGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAC--GU-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -UUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-CAGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUA. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ral.eutro4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ralstonia eutropha str. B30P4. ACCESSION No information KEYWORDS No information. SOURCE Ralstonia eutropha str. B30P4. ORGANISM Ralstonia eutropha. REFERENCE 1 AUTHORS Lajoie,C.A., Layton,A.C., Easter,J.P., Menn,F.-M. and Sayler ,G.S. TITLE Degradation of surfactants and polychlorinated biphenyls by recombinant field application vectors JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U52349|g1272448 isolate_name= B30P4 BASE COUNT 70 a 73 c 85 g 55 t 4093 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...).....C AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-U. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alc.spM913 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alcaligenes sp. str. M91-3. ACCESSION No information KEYWORDS No information. SOURCE Alcaligenes sp. str. M91-3. ORGANISM Alcaligenes sp. REFERENCE 1 AUTHORS Hallberg,K.B., Radosevich,M. and Tuovinen,O.H. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L31650|g469175 isolate_name= M91-3 BASE COUNT 370 a 335 c 463 g 286 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---U -CGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --CUU-GCC( C----UAAUA -----C---) GGCG-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-GGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UUAAA)-UGC -GU-AGAG-A UU-GUGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAC--GU-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-GA---- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -UUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-CAGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGU)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CG-C-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-AU-UA-CC A-CGGC-AGG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.3 PNB.NECESSARIUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.3 PNB.NECESSARIUS_SUBGROUP. ORGANISM 2.14.2.2.3 PNB.NECESSARIUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pnb.necess 4376 bp RNA RNA 02-JUL-1998 DEFINITION Polynucleobacter necessarius.. ACCESSION No information KEYWORDS No information. SOURCE Polynucleobacter necessarius. ORGANISM Polynucleobacter necessarius. REFERENCE 1 AUTHORS Springer,N., Amann,R., Ludwig,W., Schleifer,K.H. and Schmidt ,H. TITLE Polynucleobacter necessarius, an obligate bacterial endosymbiont of the hypotrichous ciliate Euplotes aedicularis, is a member of the beta-subclass of proteobacteria JOURNAL FEMS Microbiol. Lett. 135 (2-3), 333-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93019|g1070379 cell_type= protozoon biol_source= isolate ARB_4180B53F nat_host= Euplotes aedicularius ATCC 30859 BASE COUNT 395 a 346 c 475 g 309 t 2851 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A C-CUUA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- --CCCU-(-- --------GA 541 AG-------- -)-GGGG--- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- CA-A-AC-AC --CGG-CUC( U----AACAC -----A---) GU-C-CG-GG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AC-AAG|A UAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCG-CCUG U-GAC-UGUA U-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------A|G -UU-GU-UC- --G-GA---- ---------- 1681 -(UUU-AC)A ---------- ---------- ---------- --------UC -CUGAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUCAG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CACU--- -AA----CGA 1981 -AGU-A--(- GAGA-)-UAC AU-UAGG--- UG-------- --CUC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GAG------- ----AA---| AGU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -UG-C-AUC- GUAGUCCGAA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-UU-GCCA -GAA-G-CUG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AC-UG-CC A-CGGC-AGG GUU-CA-UG- ACU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A43L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A43L.. ACCESSION No information KEYWORDS No information. SOURCE clone A43L. ORGANISM clone A43L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91466|g987771 BASE COUNT 80 a 61 c 97 g 60 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 U-AC-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCG-CCUG U-GAC-UGUA U-AGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC U--GA-CU-- -------A|G -UU-GU-U.. .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.4 OXALOBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.4 OXALOBACTER_SUBGROUP. ORGANISM 2.14.2.2.4 OXALOBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1014 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1014. str. SBR1014. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1014. str. SBR1014. ORGANISM str. SBR1014. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84459|g871580 isolate_name= SBR1014 BASE COUNT 94 a 89 c 138 g 68 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACNC-AUGCA A-GUC-GAGC 121 G--GC-NG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------NA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------G GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G U-CCUG---U -CGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- U(-GAAA-)A -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CGA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GAG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Oxa.formig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oxalobacter formigenes str. OxB ATCC 35274 (T). ACCESSION No information KEYWORDS No information. SOURCE Oxalobacter formigenes str. OxB ATCC 35274 (T). ORGANISM Oxalobacter formigenes. REFERENCE 1 AUTHORS Stahl,D. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35274 (T) legacy_attribute= D. Stahl seq (unpub); oblig. anaerobe isolate_name= OxB BASE COUNT 348 a 291 c 423 g 283 t 3031 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------WA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---WAU -AU-AUCGG- A-A--CGU-A C-CCAA---G -AGUG-G-GG 421 -GAC-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CUC---- 661 ----CNGG-- AGC---G-|G CCGAU----- -AG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUN| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-UG --AUU-GGG( C----UAAUA -----U---) CCCG-AU-UA 1081 ---------- -------G-A U-GA-CGGU- A-CCU-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUYNA UC-GGAAUUN -CU-GGGC|G UNAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-NAG|A CAG---AUGU G-AAA-UG-C CC-GGG-C(- UC-A)A-CCU -GG-N-NAU- 1321 -UGCA-UUUG U-NAC-UGCA C-GGCUN-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CN- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-AUGGG-G -A-C-CN--G 1861 C-N--CN-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- NN-ACC-C(G 2881 -AGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD58 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26245|g498449 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 67 c 85 g 58 t 4103 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--AUU- 2281 AG--UUGC-U A--CG----- ---------- ---------- ----(---GU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G11 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G11.. ACCESSION No information KEYWORDS No information. SOURCE clone G11. ORGANISM clone G11. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91183|g984106 BASE COUNT 87 a 71 c 107 g 71 t 4040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUK-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAAUGGGU- GCG-CAG-GC -G|-GU-GU- 1261 K-KC-AAG|A CAG---GCGU G-AAA-UC-C CC-NNN-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GCGC-UUUG U-GAC-UGCA C-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.lemoign 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas lemoignei str. LMG 2207 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas lemoignei str. LMG 2207 (T). ORGANISM Pseudomonas lemoignei. REFERENCE 1 AUTHORS Mergaert,J., Schirmer,A., Hauben,L., Mau,M., Hoste,B., Kersters,K., Jendrossek,D. and Swings,J. TITLE Isolation and identification of poly(3-hydroxyvalerate ) -degrading strains of Pseudomonas lemoignei JOURNAL Int. J. Syst. Bacteriol. 46 (3), 769-773 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92555|g1488634 isolate_name= LMG 2207 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 385 a 334 c 464 g 302 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--W ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UR (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAA---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--U- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAR-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CA 1021 --GG-AAC-- GA-A-AC-GG --AGC-UGG( C----UAAUA -----C---) CUGG-CU-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GC-AAG|A CAG---AGGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCC-UUUG U-GAC-UGCA U-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UUC-A--(- GAGA-)-UGG -A-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-A-CA -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-AGG AUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Kw55 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Kw55. str. Kw55. ACCESSION No information KEYWORDS No information. SOURCE str. Kw55. str. Kw55. ORGANISM str. Kw55. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28794|g469498 isolate_name= Kw55 BASE COUNT 105 a 87 c 109 g 79 t 3996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ..CCUA---G -AGUG-G-GG 421 -GAU-AACCG U--------- ------AA-- C(-GAAA-)G -UUAC-G--C UAAUUCC-GC 481 AC-ACG---- ---------- ---------- ---------- ---AAC-(-- --------UC 541 AG-------- -)-GUU---- ---------- ----GUAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--U- U--CUC---- 661 ----UUGG-- AGU---G-|C CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAC ----GA-C-- CAC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-GG --CAG-UUU( C----UAAUA -----C---) AGAC-UG-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0265 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0265. str. B0265. ACCESSION No information KEYWORDS No information. SOURCE str. B0265. str. B0265. ORGANISM str. B0265. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12216|g529295 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0265 BASE COUNT 221 a 180 c 250 g 176 t 3549 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ....GUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUUG A-GAC-UGCA U-GGCUA-GA GUG-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GN- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GA-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GU -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CCU 1981 -CUG-A--(- GAGA-)-UUA -G-AGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-N-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-A-CA -UA--CAGAG GGC-C-N-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAC- AUGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UC........ .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tlr.mixta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Telluria mixta. ACCESSION No information KEYWORDS No information. SOURCE Telluria mixta. ORGANISM Telluria mixta. REFERENCE 1 AUTHORS Bowman,J., Sly,L., Hayward,A.C., Spiegel,Y. and Stackebrandt ,E. TITLE Telluria mixta (Pseudomonas mixta Bowman, Sly and Hayward 1988) gen. nov., comb. nov., and Telluria chitinolytica sp. nov., soil-dwelling organisms which actively degrade polysaccharides JOURNAL Int. J. Syst. Bacteriol. 43, 120-124 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65589|g506584 ACM 1762 (T) = ATCC 49108 = UQM 1762 BASE COUNT 377 a 327 c 458 g 301 t 2913 others ORIGIN 1 .......... .......... .......... ...CAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AA-UCUGG- A-A--CGU-A C-CCAG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUNA--C- U--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-UG --GAA-UGG( C----UAAUA -----U---) CUGN-NU-AC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---UCGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-AUGG A-GAC-UGCA A-GGCUU-GA AUC-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA UUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGU-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-YGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----CCU 1981 -CCG-A--(- GAGA-)-UUG -G-AGGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CAU---- ---------- ---------- ----(---GG ---CA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-UG -GAAU-CGG- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UAGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UG-GU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -ACGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CN G-CGUU-GUG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tlr.chitin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Telluria chitinolytica str. 20M ACM 3522 (T). ACCESSION No information KEYWORDS No information. SOURCE Telluria chitinolytica str. 20M ACM 3522 (T). ORGANISM Telluria chitinolytica. REFERENCE 1 AUTHORS Bowman,J., Sly,L., Hayward,A.C., Spiegel,Y. and Stackebrandt ,E. TITLE Telluria mixta (Pseudomonas mixta Bowman, Sly and Hayward 1988) gen. nov., comb. nov., and Telluria chitinolytica sp. nov., soil-dwelling organisms which actively degrade polysaccharides JOURNAL Int. J. Syst. Bacteriol. 43, 120-124 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65590|g506586 ACM 3522 (T) = CNCM I-804 isolate_name= 20M BASE COUNT 377 a 323 c 456 g 307 t 2913 others ORIGIN 1 .......... .......... .......... ...CAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CG-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AA-UCUGG- A-A--CGU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUU-(-- --------AG 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GAUGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUAU--C- U--CUA---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-UG --GUA-UGG( C----UAAUA -----U---) CUGU-AU-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-AUGG A-GAC-UGCA A-GGCUN-GA GUU-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGU-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUG-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 CGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGC--- -AA----CCU 1981 -CCG-A--(- GAGA-)-UUG -G-AGGG--- UA-------- --GGC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| GCC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- GGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CAU---- ---------- ---------- ----(---GC ---CA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|A 2701 G-NA-CU-C- G-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCGAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UG-GU-ACCA -GAA-G-UAG 3121 G-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -ACNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CN G-CGUU-GUG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Shin,Y., Hiraishi,A. and Sugiyama,J. TITLE Molecular systematics of the genus Zoogloea and emendation of the genus JOURNAL Int. J. Syst. Bacteriol. 43, 826-831 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14256 BASE COUNT 372 a 318 c 458 g 299 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CGUG---G -AGUG-G-GG 421 -GAU-CG-CG U--------- ------AG-- C(-GAAA-)G -UUGC-G--C UAAUAGC-GC 481 AU-GCG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-UAU---- ---------- ----GAGA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUA--U- G--CUC---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-GG --GGU-UUU( C----UAAUA -----C---) AGAG-AU-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-AUGG U-GAC-UGCA A-GGCUA-GA GUU-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-GCG -GG-C----- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------UA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 N-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGNAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---CAGA--- -AA----UCC 1981 -UCG-A--(- GAGA-)-UUG -A-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-A AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UU -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-A-CA -UA--AAGAG GGC-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U UCCAN-NAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-AGG AUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Rossello-Mora,R., Ludwig,W. and Schleifer,K.H. TITLE Zoogloea ramigera: a phylogenetically diverse species JOURNAL FEMS Microbiol. Lett. 114, 129-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74914|g434337 ATCC 25935 = OSU 115 = NCIMB 11941 BASE COUNT 398 a 338 c 470 g 313 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CCUG---G -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--U- G--CUC---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-GG --GUU-UUU( C----UAAUA -----C---) AGAG-AU-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-AUGG U-GAC-UGCA A-GGCUA-GA GUU-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-AA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-U----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------AA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---CAGA--- -AA----UCC 1981 -UCG-A--(- GAGA-)-UUG -A-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-A-CA -UA--CAGAG GGC-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -CA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-AGG AUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K11 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K11.. ACCESSION No information KEYWORDS No information. SOURCE clone K11. ORGANISM clone K11. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91526|g987801 BASE COUNT 90 a 72 c 109 g 73 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG A-GAC-UGCA A-GGCUA-GA AUC-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA UUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G22 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G22.. ACCESSION No information KEYWORDS No information. SOURCE clone G22. ORGANISM clone G22. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91274|g987022 BASE COUNT 90 a 72 c 109 g 73 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG A-GAC-UGCA A-GGCUA-GA AUC-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA UUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.10_40 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS10.40. str. PUS10.40. ACCESSION No information KEYWORDS No information. SOURCE str. PUS10.40. str. PUS10.40. ORGANISM str. PUS10.40. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34035|g1039429 isolate_name= PUS10.40 BASE COUNT 382 a 318 c 448 g 301 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU NGAANCGN-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CN-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-A C-CCUA---G -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--U- G--CUC---- 661 ----GUGG-- AGC---G-|G -CGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AC-GG --UGA-GAG( C----UAAUA -----U---) CUUU-UG-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUGG A-GAC-UGCA A-GGCUA-GA AUC-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA UUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCA-GU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-CU U-AAU-GA-G ACCU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-A-CA -UA--CAGAG CGC-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAG-AAAG -UG-U-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGNU-AGG AUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP405 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP405.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP405. ORGANISM clone JAP405. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09778|g495530 BASE COUNT 79 a 61 c 88 g 51 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGUAA C-CCUAAGAA GUGGG-G-GG 421 -GAU-AAACG U--------- -----CGA-- C(-GAAAA)G AUUAC-GC-U CAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--U- G--CUC---- 661 ----GUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.5 BURKHOLDERIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.5 BURKHOLDERIA_SUBGROUP. ORGANISM 2.14.2.2.5 BURKHOLDERIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A42L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A42L.. ACCESSION No information KEYWORDS No information. SOURCE clone A42L. ORGANISM clone A42L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91465|g987770 BASE COUNT 93 a 74 c 119 g 71 t 4019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC CG|-GU-UU- 1261 G-U--AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGUA A-GACUA-GA GUA-----CG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -CUUA..... 1741 .......... ..AC-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Psco.l 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P. and Moran,N.A. TITLE Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rDNA sequences JOURNAL Mol. Phylog. Evol. 1, 26-30 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M68889 endosymbiont_of= mealybug (Pseudococcus longispinus) NB: IDENT:general beta purple; member MB group BASE COUNT 365 a 353 c 459 g 277 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UAGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GUAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GU (--UU----- ---------- ---------- 241 --------AG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGU- 361 -A-CG-GG-U GAGC---AAC -GC-CCCGG- A-A--CGU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AG-CC U--------- ------GG-- C(-GAAA-)G -C-AG-A--U UAAUACC-GC 481 AU-GAA---- ---------- -------G-C CG-C------ ---ACA-(-- --------GC 541 AU-------- -)-GGC---- ---GC----G GU--GAAA-- ---GUGGGG- GA--U----- 601 --(------- ---UCUA--- ---)------ ------G--| -CCUCA--C- G--CUA---- 661 ----CUGG-- AUC---G-|G CCGGG----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UG- AGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUC-U G--ACA-U-- GG-GC-(GCA C)ACUG-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUU-GU-UC 1021 --GG-GAU-- GA-A-GG-AG --GGC-GUG( C----AAACA -----C---) CAUG-CC-CU 1081 ---------- -------C-U U-GA-CGAU- A-CCG-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-CGG-GU -G|-GC-UU- 1261 G-CC-AAG|A CCC---CUGU A-AAA-UC-C UA-CGG-C(- CC-A)A-CCG -UA-G-UGC- 1321 -AGCG-GAGG U-UAC-UGGU A-AGCUU-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAA- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AU-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-C-AUGU C--GA-CU-- -------A|G -UC-GU-CGG -GG-GAAG-- ---------- 1681 -(-CC-CU)- ---------- ---------- UU-------- -------UUC -CUCGG-UGA 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UGAA-GUCGA C|C|G-CCU- G-AGUAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-GC-UUG ACA-UG|--- ---------G ---CGAA--- -GA----UUC 1981 -U-C-C--(- GAGA-)-GGC -G-GAAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UUC-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CC-G |-UC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---CA ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AUA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUAAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-U-GG -AG--CAAAG GGU-C-G-C- CA-ACU-C(G 2881 -AGA)GAGG- ---------- GA-GCUAA-U CCCAC-AAAC -CC-A-GCC- CCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AAG- CC-GC-AUCA -GAA-G-CAG 3121 C-AUC-C-CU -AA-CCCU-- ---------- ---------- -----(---- -AGGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAAG-G-A G-GC-UG-CG A-AGGU-GGG GUC-UA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Dysm.n 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P. and Moran,N.A. TITLE Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rDNA sequences JOURNAL Mol. Phylog. Evol. 1, 26-30 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M68888 endosymbiont_of= mealybug (Dysmicoccus neobrivipes) NB: IDENT: general beta purple; member MB group BASE COUNT 363 a 350 c 457 g 278 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UAGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GUAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------AG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GCGU---AAC -GC-CCCGG- A-A--CGU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AG-CC U--------- ------GG-- C(-GAAA-)G -C-AG-A--U UAAUACC-GC 481 AU-GAA---- ---------- -------G-C CG-C------ ---ACA-(-- --------GC 541 AU-------- -)-GGC---- ---GC----G GU--GAAA-- ---GUGGGG- GA--U----- 601 --(------- ----CUA--- ---)------ ------G--| -CCUCA--C- G--CUA---- 661 ----CUGG-- AUC---G-|G CCGGG----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UG- AGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CA--C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACA)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACA-U-- GG-GC-(GCA C)-G---UGA UCCA|-GC-A UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUU-GU-UC 1021 --GG-GAU-- GA-A-GG-AG --GGC-GUG( C----AAACA -----C---) CAUG-CC-CU 1081 ---------- -------C-U U-GA-C-GU- A-CCG-A-AA G-AA--UAA- ---------C 1141 -ACCGGCU-A ACUAC-GUG( CAA--GCAGC CGCGGUA-A) U-A-C--UAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-CGG-GU -G|-GC-UU- 1261 G-CC-AAG|A CCC---CUGU A-AAA-UC-C UA-CGG-C(- CC-A)A-CCG -UA-G-UGC- 1321 -UGCG-GAGG U-GAC-UGGU A-U-CUU-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAA- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AU-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-C-AUGU C--GA-CU-- -------A|G -UC-GU-CGG -GG-GAAG-- ---------- 1681 -(-CC-CU)- ---------- ---------- UU-------- -------UUC -CUAGG-UGA 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UGAA-GUCGA C|C|G-CCU- G-AGGACUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UG|--- ---------G ---CGGA--- -GA----UUC 1981 -UGC-C--(- GAGA-)-GGC -G-GAAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UUC-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CC-G |-UC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---CA ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AUA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUAAU-G-GG -UG--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGC-U-GG -AG--CAAAG GGU-C-G-C- CA-ACU-C(G 2881 -AGA)GAGG- ---------- GA-GCUAA-U CCCAU-AAAC -CC-A-GCC- CCAGUUCAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-AAG- CC-GC-AUCA -GAA-G-CAG 3121 C-AUC-C-CU -AA-CCCU-- ---------- ---------- -----(---- -AUG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAAG-G-A G-GC-UG-CG A-AGGU-GGG GUC-UA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Psco.m 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P. and Moran,N.A. TITLE Phylogenetic relationships of the endosymbionts of mealybugs (Homoptera: Pseudococcidae) based on 16S rDNA sequences JOURNAL Mol. Phylog. Evol. 1, 26-30 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M68890 endosymbiont_of= mealybug (Pseudococcus maritimus) NB: IDENT:general beta purple; member MB group BASE COUNT 365 a 353 c 462 g 269 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UUGC-GGU-A -UGC-AU--A ACAC-AUGCA A-GUC-GUAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UA----- ---------- ---------- 241 --------AG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-CCCGG- A-A--CGU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AG-AC U--------- ------GG-- C(-GAAA-)G -UCAG-A--G UAAUACC-GC 481 AU-GAA---- ---------- -------G-C CA-C------ ---GCA-(-- --------GC 541 AU-------- -)--GC---- ---GC----G GU--GAAA-- ---GUGGGG- GA--U----- 601 --(------- ----CUA--- ---)------ ------G--| -CCUCA--C- G--CUA---- 661 ----CUGG-- AUC---G-|G CCGGG----- -G-|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( AU-AAU-AG) -C-CCACC-A A|-GGC-UG- AGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UAC-)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACA-U-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU GAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CA --AUA-UCC( U----UAACA -----G---) GAUG-CC-CU 1081 ---------- -------C-U U-GA-CGAU- --CCG-A-AA G-AA--U-AG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGCA-A) U-G-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA AC-GGAA-CA -CU-GGGC|G UAAA-GGGU- GCG-CGG-GU -G|-GC-UU- 1261 G-CC-AAG|A CCC---CUGU A-AAA-UC-C UA-CGG-C(- CC-A)A-CCG -UA-G-AGC- 1321 -UGCG-GAGG U-GAC-UGGC A-AGCUU-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAA- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AU-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-C-AUGU C--GA-CU-- -------A|G -UU-GU-CGG -GG-GA---- ---------- 1681 -(UCC-CU)U ---------- ---------- ---------- -------UUC -CUCGG-UGA 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UGAA-GUCGA C|C|G-CCU- G-AGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---CGGA--- -GA----UUC 1981 -UAC-C--(- GAGA-)-GGC -G-GAAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UCC-GU-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-G---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CC-G |-UC--UAU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---CA ---CU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AUG-GA-G A-CU-G-CCA --GC(-GA-U GA)-GCU-A- -GAGG-A-GG 2761 G-AG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GG -UG--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-U-GG -AG--CAAAG GGU-C-G-C- CA-ACU-C(G 2881 -A-A)GAGG- ---------- GA-GCUAA-U CCCAC-AAAC -CC-A-GCC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-AGG- CC-GC-AUCC -GAA-G-CAG 3121 C-CUC-C-CU -AA-CCCU-- ---------- ---------- -----(---- -AUUGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GGGAAG-G-A G-GC-UG-CG A-AGGU-GGG GUC-UA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.androp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia andropogonis. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia andropogonis. ORGANISM Burkholderia andropogonis. REFERENCE 1 AUTHORS Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and Hayward,A.C. TITLE Phylogenetic studies on rRNA group II Pseudomonas using 16S rRNA sequences JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67037 Former RDP Sids: Ps.andropo NB: former name Pseudomonas andropogonis BASE COUNT 361 a 330 c 455 g 284 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GN-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CNNN-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-UC 1021 --GG-GAA-- GA-A-AA-GG --CGA-GGG( C----UAAUA -----U---) CCUU-UG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGGC A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----CCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-C-GU-NGG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MF657 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. MF657. str. MF657. ACCESSION No information KEYWORDS No information. SOURCE str. MF657. str. MF657. ORGANISM str. MF657. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28797|g469501 isolate_name= MF657 BASE COUNT 80 a 73 c 111 g 56 t 4056 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------...G 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GGGGGGG GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCU--C- G--CUC---- 661 ----AAGG-- GGC---G-|G CCGAU----- -GC|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AU-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-CU --UCU-GUC( C----UAAUA -----C---) GGCG-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MA674 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. MA674. str. MA674. ACCESSION No information KEYWORDS No information. SOURCE str. MA674. str. MA674. ORGANISM str. MA674. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28795|g469499 isolate_name= MA674 BASE COUNT 93 a 91 c 124 g 82 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GAA- C-U--UUGCU C-UUUG---G -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- C(CGAAA-)G -CCGG-GA-U UAAUACUCGC 481 AA-AC----- ---------- -------C-G A--------- ---CUU-(-- --------CU 541 UU-U------ -)-GGG---- ---------U UG--UAAGG- ---GGGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCU--C- U--CUC---- 661 ----UUGG-- GUG---G-|G CCGAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GG- CGA------- -----UC-UG 781 U-AU-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-U CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-CC --ACU-GUC( C----UAAUA -----C---) GCCG-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--UAAG ---------C 1141 -ACC...... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.spN3P2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia sp.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia sp. ORGANISM Burkholderia sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37344|g1051196 BASE COUNT 378 a 354 c 487 g 294 t 2863 others ORIGIN 1 .......... .......... .......... .GAUCCCGAC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GU----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUAG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----CAGG-- GGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-CC --UCC-GUC( C----UAAUA -----C---) GGUG-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-CU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGGC G-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---AUGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGU -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGGC-GNGG N(UCA-G)UU NCCC...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.spN2P5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia sp.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia sp. ORGANISM Burkholderia sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37342|g1051194 BASE COUNT 365 a 348 c 474 g 280 t 2909 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---UUAG--- ---)------ -----GA--| -CCUCC--C- G--CUA---- 661 ----CAGG-- GGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-CG --CCG-UGG( U----UAAUA -----C---) CCGU-GG-CG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-CC- 1261 G-CU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGGC G-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---AUGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGU -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS-9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04705 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT:general eubacteria; specif. rel. env.OS_E BASE COUNT 55 a 59 c 71 g 50 t 4141 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 ...CUUA-CC UAG-GC-UUG ACA-UG|--- -------C-U ---GGGU--- -AA----AGC 1981 -GGA-U--(- GAAA-)-GUC -C-GUGU--- C--------- ---C------ --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| AUC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCU- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-GA -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-C... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.spN2P6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia sp.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia sp. ORGANISM Burkholderia sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37343|g1051195 BASE COUNT 374 a 352 c 476 g 281 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---UCAG--- ---)------ -----GA--| -CCUCC--C- G--CUA---- 661 ----CAGG-- GGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAS-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UMCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GWCAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-CC --UCC-GCC( C----UAAUA -----U---) GGUG-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-CC- 1261 G-CU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGGC G-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-WCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AURCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---AUGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGU -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA ACGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCACUC- (UGCAAC-U- C)-GAGUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGNC-GUGG A(UCCAA)GC UUCCA..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.caryph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia caryophylli. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia caryophylli. ORGANISM Burkholderia caryophylli. REFERENCE 1 AUTHORS Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and Hayward,A.C. TITLE Phylogenetic studies on rRNA group II Pseudomonas using 16S rRNA sequences JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67039 Former RDP Sids: Ps.caryoph NB: former name Pseudomonas caryophylli BASE COUNT 353 a 339 c 462 g 263 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUG---G -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CNNN-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GG 541 GA-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUC---- 661 ----AAGG-- GGC---G-|G CCGAU----- -GG|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UGC-CUG( A----UAAUA -----C---) CGGG-CG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC G-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---ACGG--- -AA----UCC 1981 -CGC-U--(- GAGA-)-GGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-AGU-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C --GU-CA... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.mallei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia mallei str. China 7 ATCC 23344. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia mallei str. China 7 ATCC 23344. ORGANISM Burkholderia mallei. REFERENCE 1 AUTHORS Hashimoto,Y., Ezaki,T. and Arakawa,M. Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., TITLE (Palleroni and Holmes 1981) comb. nov. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23344 Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55008 ATCC 23344 = NBL 7 = RH 627 = EY 2233 isolate_name= China 7 BASE COUNT 341 a 308 c 433 g 258 t 3036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GC-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CA --UUC-UGG( C----UAAUA -----C---) CCGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- ---------U -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.pmalle 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia pseudomallei. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., Hashimoto,Y., Ezaki,T. and Arakawa,M. TITLE new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS ATCC 23343 = WRAIR 286 = WG MP-S = AMSGS 286 = RH 2593 = EY 2004 NB: seq presumed to not be deposited in Genbank; same as Bur.mallei BASE COUNT 341 a 308 c 433 g 258 t 3036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GC-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CA --UUC-UGG( C----UAAUA -----C---) CCGG-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- ---------U -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.pmall3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia pseudomallei.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 AUTHORS Dharakul,T., Songsivilai,S., Viriyachitra,S., Luangvechakan ,V. and Tassaneetritap,B. TITLE Detection of Burkholderia pseudomallei DNA in patients with septicemic melioidosis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29877|g905383 BASE COUNT 88 a 79 c 117 g 69 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ..GU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CA --UUC-UGG( N----UAAUA ---------) CCG....... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.pmall4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia pseudomallei.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 AUTHORS Dharakul,T., Songsivilai,S., Viriyachitra,S., Luangvechakan ,V. and Tassaneetritap,B. TITLE Detection of Burkholderia pseudomallei DNA in patients with septicemic melioidosis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29878|g905384 BASE COUNT 89 a 80 c 118 g 71 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......G-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UR 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CA --UUC-UGG( C----UAAUA ---------) CCG....... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.pmall5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia pseudomallei.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 AUTHORS Dharakul,T., Songsivilai,S., Viriyachitra,S., Luangvechakan ,V. and Tassaneetritap,B. TITLE Detection of Burkholderia pseudomallei DNA in patients with septicemic melioidosis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29879|g905385 BASE COUNT 76 a 73 c 109 g 60 t 4058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .........U -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UU........ 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.pmall2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia pseudomallei.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia pseudomallei. ORGANISM Burkholderia pseudomallei. REFERENCE 1 AUTHORS Dharakul,T., Songsivilai,S., Viriyachitra,S., Luangvechakan ,V. and Tassaneetritap,B. TITLE Detection of Burkholderia pseudomallei DNA in patients with septicemic melioidosis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29876|g905382 BASE COUNT 76 a 73 c 109 g 60 t 4058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .........U -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UU........ 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.gladio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia gladioli. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia gladioli. ORGANISM Burkholderia gladioli. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., Hashimoto,Y., Ezaki,T. and Arakawa,M. TITLE Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55010 EY 3258 = GIFU 12205 = MAFF 03-01065 BASE COUNT 343 a 307 c 432 g 261 t 3033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCAG-G--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------CA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UGA-GGG( C----UAAUA -----U---) CCUU-CG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.gladi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia gladioli. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia gladioli. ORGANISM Burkholderia gladioli. REFERENCE 1 AUTHORS Li,X., Del Dot,T., Dorsh,M., Stackebrandt,E., Sly,L.I. and Hayward,A.C. TITLE Phylogenetic studies on rRNA group II Pseudomonas using 16S rRNA sequences JOURNAL J. Appl. Bacteriol. 74, 324-329 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67038 Former RDP Sids: Ps.gladiol ATCC 10248 = NCPPB 1891 legacy_attribute= biovar:pathovar gladioli NB: former name Pseudomonas gladioli BASE COUNT 362 a 333 c 453 g 282 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CNNN-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UGA-GGG( C----UAAUA -----U---) CCUU-CG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UAG-A--(- GAGA-)-UCU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C --GU-CA-CN A-C-GU-AGG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cepac3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cepacia.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cepacia. ORGANISM Burkholderia cepacia. REFERENCE 1 AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87275|g1165001 BASE COUNT 385 a 355 c 488 g 307 t 2841 others ORIGIN 1 .......... .......... .......... ..UAAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G C-GAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --CUG-GCU( C----UAAUA -----C---) AGUC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-C-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cocovn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cocovenenans. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cocovenenans. ORGANISM Burkholderia cocovenenans. REFERENCE 1 AUTHORS Zhao,N., Qu,C., Wang,E. and Chen,W. TITLE Phylogenetic evidence for the transfer of Pseudomonas cocovenenans (van Damme et al. 1960) to the genus Burkholderia as Burkholderia cocovenenans (van Damme et al. 1960) comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 600-603 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87334|g854365 BASE COUNT 69 a 71 c 98 g 53 t 4085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CUUC-U--A UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------CA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cepac4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cepacia.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cepacia. ORGANISM Burkholderia cepacia. REFERENCE 1 AUTHORS Fani,R. TITLE Molecular characterization of rizosphere and clinical isolates of Burkholderia cepacia JOURNAL Res. Microbiol. 146, 531-542 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80284|g1019756 BASE COUNT 343 a 316 c 425 g 275 t 3017 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..UGA A-GUC-GAAC 121 G--GN-NG-C CC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--NU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--N AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- N(-NAAA-)G -CCAU-U--U AAAUACC-GC 481 AU-CCG---- ---------- ---------- ---------- ---AUC-(-- --------NC 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|N CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UUG-GCU( C----UAAUA -----U---) AGUC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-N-AA G-AA--UAAN ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCANC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAN-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-NCGU- NCG-CAG-NC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GN-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)---- -G-GGAG--- UU-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cepac7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cepacia str. G4. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cepacia str. G4. ORGANISM Burkholderia cepacia. REFERENCE 1 AUTHORS Zhou,J., Weller,R. and Tiedje,J. TITLE The phylogeny of aerobic and microaerophilic BTEX degrading bacteria as determined by analysis of 16S ribosomal RNA gene sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L28675|g453511 Former RDP Sids: Ps.cepaci7 isolate_name= G4 NB: former name Pseudomonas cepacia BASE COUNT 340 a 312 c 423 g 260 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UUG-GCU( C----UAAUA -----C---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUC -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-C-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-C-C- CA-ACC-C(N 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UNCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CG-UG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.spCRE7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia sp.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia sp. ORGANISM Burkholderia sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis ,S.G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37340|g1051192 BASE COUNT 367 a 341 c 467 g 289 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AU-CC --UUG-GCU( C----UAAUA -----C---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUC -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.spGSOY 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia sp.. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia sp. ORGANISM Burkholderia sp. REFERENCE 1 AUTHORS Floro,G., Buzzelli,J.A., Griffin,W. and Stolz,J.F. TITLE Aerobic degradation of soy diesel by Burkholderia sp. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16140|g571432 BASE COUNT 360 a 317 c 449 g 285 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .....GG-UG (--CU----- ---------- ---------- 241 -------UGC -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--A GGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -GAUG-G-GG 421 -GAU-AG-CC ---------- -------G-- -(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--C----- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCU----C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -G-|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC--A- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)---CCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-CG-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-G A-AGA--A-G GC(--UU-CG --)GG-UUGU AAA-GACAC| UUUUCGU-CC 1021 --GG-AAA-- GA-A-AU-CC --UUG-GUU( C----UAUAU -----A---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CUGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 -CC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-GC--(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -AGC------ 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)G-CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGC -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-G--GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-- A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G--CG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C -UUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-A-C-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG--GCUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGGU UU-UU-ACCA -GAA-G-UUG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-AGG-A-C --GU-CA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cepac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cepacia str. Ballard 717. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cepacia str. Ballard 717. ORGANISM Burkholderia cepacia. REFERENCE 1 AUTHORS Yabuuchi,E., Kosako,Y., Oyaizu,H., Yano,I., Hotta,H., Hashimoto,Y., Ezaki,T. and Arakawa,M. TITLE Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. JOURNAL Microbiol. Immunol. 36, 1251-1275 (1992) STANDARD No information COMMENTS ATCC 25416 (T) = RH 2799 = NCTC 10743 = EY 645 isolate_name= Ballard 717; Starr PC 25 NB: data hand entered from paper BASE COUNT 334 a 300 c 412 g 252 t 3078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG--C C--------- ------GG-- C(-GAAA-)G -CCAG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-GAA-- GA-A-AU-CC --UUG-GCU( C----UAAUA -----C---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-U.|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ........C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -ACAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-AGG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bur.cepaci 4376 bp RNA RNA 02-JUL-1998 DEFINITION Burkholderia cepacia str. Ballard 717. ACCESSION No information KEYWORDS No information. SOURCE Burkholderia cepacia str. Ballard 717. ORGANISM Burkholderia cepacia. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22518 Former RDP Sids: Ps.cepacia ATCC 25416 (T) = RH 2799 = NCTC 10743 = EY 645 isolate_name= Ballard 717; Starr PC 25 NB: former name Pseudomonas cepacia BASE COUNT 365 a 334 c 457 g 289 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~ACUGA AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGG-UG (--CU----- ---------- ---------- 241 --------UN -)CA-CCUN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CAU-G U-CCUG---U -AGUG-G-GG 421 -GAU-AG--C C--------- ------GG-- C(-GAAA-)G -CCNN-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGN- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UAGG-- GUU---G-|G CCGAU----- -GG|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-GAA-- GA-A-AU-CC --UUG-GCU( C----UAAUA -----C---) AGCC-GG-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CNA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUGG U-GAC-UGGC A-GGCUA-GA GUA-----UG N-NA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-A----- ---------- 1681 -(UUC-AU)U ---------- ---------- ---------- --------UC -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---UCGG--- -AA----UCC 1981 -UGC-U--(- GAGA-)-GGC -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---NA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -ACAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-N N-GU-CA-CN A-NGGU-AGG AUU-NA-NG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.2.6 RUBRIVIVAX_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.2.6 RUBRIVIVAX_SUBGROUP. ORGANISM 2.14.2.2.6 RUBRIVIVAX_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thsulf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thermosulfatus. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thermosulfatus. ORGANISM Thiobacillus thermosulfatus. REFERENCE 1 AUTHORS Shooner,F., Bousquet,J. and Tyagi,R.D. TITLE Isolation, phenotypic characterization, and phylogenetic position of a novel facultatively autotrophic, moderately thermophilic bacterium Thiobacillus thermosulfatus sp. nov . JOURNAL Int. J. Syst. Bacteriol. 46, 409-415 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27839|g1136226 BASE COUNT 369 a 343 c 460 g 270 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .UUGA-CG-- UAGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GN (--GC----- ---------- ---------- 241 --------AM -)-C-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A C-CCUG---U -GAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--UCA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GG|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCAC| UUUK-GG-CG 1021 --GG-GAC-- GA-A-AU-AA --CGA-GUG( C----GAAUA -----C---) CACU-UG-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAGCCGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 G-GU-AAG|A CAG---AUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCU -GGCG-AAC- 1321 -UGCA-UUUG K-GAC-UGCU C-GACUA-GA GUA-----CG G-KAGGAGGG GAG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GN-UGG -AC-GG---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------CUG -YUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UNAA-GUCGA C|C|N-NCU- G-GGGAGUAC 1801 GGC-C---(S CAA)---G-G UU-AAANCUC -AAA-GGAAU UG-ACGGG-G CA-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-C-UUA-CC UAC-CC-UAG ACA-UG|--- ---------C ---CAGG--- -AA----CUC 1981 -GCC-A--(- GAGCA)-UGG -C-UUGG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ---NAA---| CCU-GG-AYA |---C|A--G 2161 GU-GC-UGCA UG|GGGUG-- NCG-UCA|-G UCU---CG-U |GU-C(-GUG A)-NAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AN-------- CGAG-C--GA ACCCC-UU-G |-NC--AUU- 2281 AG--NUGC-U N--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-ANU-GA-A A-CC-A--CG --GU(-GA-C AA)-ACC-G- -GAGG-A-NG 2761 G-UG-GNG-A UU-ACN--NC -A-NGUN-CU CAU-G-GC-C CUUAU-G-GG -UW--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-A-CUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-UGGUG- AAUAC-GUA- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-CU-ACCA -GAA-G-UAG 3121 U-UAGAC-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGUAG-GGC G-AC-UA-CC A-CGGU-AGG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GNAA-CAAGG UAG....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.perome 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus perometabolis. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus perometabolis. ORGANISM Thiobacillus perometabolis. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79423 (bases 1 to 245) BASE COUNT 213 a 203 c 280 g 157 t 3523 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...AU----- -GG|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----KC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACYGG-G-M 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--CCNC| NUUU-GG-CG 1021 --GG-GGC-- GA-A-AU-CA --UCG-AGU( GA---UAAUA ----CC---) AUUC-GG-UG 1081 ---------- -------A-C U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-G..( .......... .........) .......... |.AGGG-N-- 1201 GCA-AGCGUA NC-GGAAUUA -CN-GGGC|G UAAA-GCGU- GC--CAG-GC -G|-GU-UA- 1261 A-GU-AAG|A CAG---AUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCN -GG-N-NAC- 1321 -UGCA-UUUG U-GAC-UGCN N-GACUA-GA GUG-----CG G-CA-GAGGG GAG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CUCCCNG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CR- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GU-UGG -AC-GG---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------CUG -UUCAG-UAA 1741 CG--UA---- --SS-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCN- N-GGGAGNAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ......UA|G 2701 AGCA-CU-C- U-AAU-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGG-C-GG -UA--CAGAG GGN-N-G-C- RR-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCNRA-U CCCUU-AAAA -CC-G-CUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGNG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1020 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1020. str. SBR1020. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1020. str. SBR1020. ORGANISM str. SBR1020. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84464|g871585 isolate_name= SBR1020 BASE COUNT 103 a 86 c 129 g 76 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGU-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUAUC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--UUA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UC-UG 781 U-AA-C-CG| -G-UCU--(A -AGA)-GGAC ----GG-U-- CGG-U|C-AC -ACUGA-C-A 841 (CUGA-AU-A ACG)--GGUC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AACUUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN6b 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN6b.. ACCESSION No information KEYWORDS No information. SOURCE clone JN6b. ORGANISM clone JN6b. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69271|g1177275 BASE COUNT 82 a 80 c 112 g 68 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-SCGU- GCG-CAG-GC -C|GGU-GG- 1261 U-GC-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)C-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA C-GGCUA-GA GUG-----CG G-CA-GAGGG GAG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCDG- -CUCCCUG-- ---------- ---------- ---------G 1501 KCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -UC-CU---- ---------- 1681 -(-UC-AC)- ---------- ---------- ---------- -------UGG -AUCAG-UAA 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2088 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2088. str. SBR2088. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2088. str. SBR2088. ORGANISM str. SBR2088. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84618|g871739 isolate_name= SBR2088 BASE COUNT 87 a 100 c 142 g 64 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC--G-C GC-G------ ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-G 901 GGG-CAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK480 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK480.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK480. ORGANISM clone SMK480. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78649|g509486 BASE COUNT 101 a 88 c 137 g 74 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .........C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUCGG- A-A--UGU-A C-CCAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -N-UA-G--C UAAUACC-GC 481 AU-AC----- ---------- ---------- ---------- ---CAC-(-- --------UG 541 AG-------- -)-GUG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUNN--N- N--CUA---- 661 ----UUGG-- AGC---A-|G CCGAU----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-GG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-U|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CG 1021 --GG-AGC-- GA-A-AC-GG --CGU-UUG( C----UAAUA -----C---) CAGA-CG-CU 1081 ---------- -------A-A U-GA-CGGU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lptx.cholo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptothrix cholodnii str. Mulder 5 LMG 7171. ACCESSION No information KEYWORDS No information. SOURCE Leptothrix cholodnii str. Mulder 5 LMG 7171. ORGANISM Leptothrix cholodnii. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33979|g504534 LMG 7171 = CCM 1827 isolate_name= Mulder 5 BASE COUNT 80 a 73 c 108 g 56 t 4059 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CUA---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lptx.spNC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptothrix sp. str. NC-1. ACCESSION No information KEYWORDS No information. SOURCE Leptothrix sp. str. NC-1. ORGANISM Leptothrix sp. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33981|g504535 geog_source= Bear Trap Creek in Syracuse, NY isolate_name= NC-1 BASE COUNT 89 a 80 c 119 g 62 t 4026 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CUA---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUU. .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lptx.disc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptothrix discophora str. SP-6 ATCC 51168. ACCESSION No information KEYWORDS No information. SOURCE Leptothrix discophora str. SP-6 ATCC 51168. ORGANISM Leptothrix discophora. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51168 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33974|g951043 isolate_name= SP-6 NB: seq. changed in GB entry by author 16-AUG-1995 BASE COUNT 377 a 343 c 476 g 289 t 2891 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CUA---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CC --UUU-GAG( U----UAAUA -----C---) CUCG-GA-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA C-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAAG--- -AA----UCU 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CUU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lptx.disc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptothrix discophora str. SS-1 ATCC 43182. ACCESSION No information KEYWORDS No information. SOURCE Leptothrix discophora str. SS-1 ATCC 43182. ORGANISM Leptothrix discophora. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43182 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33975|g501166 isolate_name= SS-1 BASE COUNT 372 a 346 c 480 g 287 t 2891 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( U----UAAUA -----C---) CUCG-GG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGUA U-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CC-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-GGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lptx.disco 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptothrix discophora str. SS-1 ATCC 43182. ACCESSION No information KEYWORDS No information. SOURCE Leptothrix discophora str. SS-1 ATCC 43182. ORGANISM Leptothrix discophora. REFERENCE 1 AUTHORS Corstjens,P. and Muyzer,G. TITLE Phylogenetic analysis of the metal-oxidizing bacteria Leptothrix discophora and Sphaerotilus natans using rDNA sequencing data JOURNAL Syst. Appl. Microbiol. 16, 219-223 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43182 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z18533 isolate_name= SS-1 BASE COUNT 340 a 320 c 433 g 261 t 3022 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-.C----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG--C-(GAA A)-GCC-AGA UCCA|-GCCA UGC--GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( U----UAAUA -----C---) CUCG-GG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGUA U-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-G-CN--- 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU---CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--CG-GGG- UU-CC-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GC......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spt.natan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerotilus natans. ACCESSION No information KEYWORDS No information. SOURCE Sphaerotilus natans. ORGANISM Sphaerotilus natans. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33977|g504537 BASE COUNT 81 a 74 c 108 g 54 t 4059 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------CG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spt.natans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerotilus natans str. 565. ACCESSION No information KEYWORDS No information. SOURCE Sphaerotilus natans str. 565. ORGANISM Sphaerotilus natans. REFERENCE 1 AUTHORS Corstjens,P.L.A.M. and Muyzer,G. TITLE Phylogenetic analysis of the metal-oxidizing bacteria Leptothrix discophora and Sphaerotilus natans using rDNA sequencing data JOURNAL Syst. Appl. Microbiol. 16, 219-223 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z18534 isolate_name= 565 BASE COUNT 343 a 323 c 427 g 256 t 3027 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-.C----- ---------- ---------- 241 --------AA -)UC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)- -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------CG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GAG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GG-C ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UAC--GC-GU 961 G-C-GG-G-A A-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-AC --UCC-GGG( C----UAAUA -----C---) CCUG-GG-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGUA G-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--AA---- --GN-(NAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- -U-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGUGGA-UCG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGA--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC--- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UC-UC-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GC......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spt.natan4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerotilus natans. ACCESSION No information KEYWORDS No information. SOURCE Sphaerotilus natans. ORGANISM Sphaerotilus natans. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33978|g504538 BASE COUNT 79 a 74 c 109 g 55 t 4059 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)---CCC .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spt.natan5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerotilus natans. ACCESSION No information KEYWORDS No information. SOURCE Sphaerotilus natans. ORGANISM Sphaerotilus natans. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33980|g504539 BASE COUNT 80 a 71 c 108 g 56 t 4061 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spt.natan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sphaerotilus natans. ACCESSION No information KEYWORDS No information. SOURCE Sphaerotilus natans. ORGANISM Sphaerotilus natans. REFERENCE 1 AUTHORS Siering,P.L. and Ghiorse,W.C. TITLE Phylogeny of the Sphaerotilus-Leptothrix group inferred from morphological comparisons, genomic fingerprinting, and 16S ribosomal DNA sequence analyses JOURNAL Int. J. Syst. Bacteriol. 46, 173-182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33976|g504536 BASE COUNT 80 a 71 c 108 g 56 t 4061 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1077 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1077. str. SBR1077. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1077. str. SBR1077. ORGANISM str. SBR1077. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84509|g871630 isolate_name= SBR1077 BASE COUNT 97 a 91 c 135 g 65 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AAGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G UCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1061 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1061. str. SBR1061. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1061. str. SBR1061. ORGANISM str. SBR1061. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84495|g871616 isolate_name= SBR1061 BASE COUNT 95 a 92 c 135 g 64 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AAGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A A-GAG--G-G NC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1060 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1060. str. SBR1060. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1060. str. SBR1060. ORGANISM str. SBR1060. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84494|g871615 isolate_name= SBR1060 BASE COUNT 98 a 92 c 131 g 66 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AAGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGU---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UAA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-A-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Id.dechlrt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ideonella dechloratans. ACCESSION No information KEYWORDS No information. SOURCE Ideonella dechloratans. ORGANISM Ideonella dechloratans. REFERENCE 1 AUTHORS Malmqvist,A., Welander,T., Moore,E., Ternstrom,A., Molin,G. and Sternstrom,I.-M. TITLE Ideonella dechloratans gen. nov., sp. nov., a new bacterium capable of growing anaerobically with chlorate as an electron acceptor JOURNAL Syst. Appl. Microbiol. 17, 58-64 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72724 Former RDP Sids: Anx.dechlr NB: method:PCR-amplified DNA former name Anoxobacterium dechloraticum BASE COUNT 368 a 359 c 483 g 288 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- G--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCU--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C--G-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( C----UAAUA -----C---) CUCG-GG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UUUG U-GAC-UGCA A-GGCUU-GA GUG-----C- G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-AG---- ---------- 1681 -(-GU-UC)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------G ---CAGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2087 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2087. str. SBR2087. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2087. str. SBR2087. ORGANISM str. SBR2087. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84617|g871738 isolate_name= SBR2087 BASE COUNT 92 a 93 c 133 g 60 t 3998 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GN (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGGC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA-GG-G CC(--UU-CG --)GG-UUGU AGA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2034 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2034. str. SBR2034. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2034. str. SBR2034. ORGANISM str. SBR2034. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84573|g871694 isolate_name= SBR2034 BASE COUNT 95 a 95 c 137 g 64 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UA| -G-UCU--(G -AGA)-GGGC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2063 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2063. str. SBR2063. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2063. str. SBR2063. ORGANISM str. SBR2063. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84597|g871718 isolate_name= SBR2063 BASE COUNT 94 a 95 c 136 g 65 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNAC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAG--- ---)------ -----GA--| -CCUCG--C- N--CUA---- 661 ----UUGG-- AGC---G-|G GCGAU----- -GU|----CA G--AUUA-G- GUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU G-GACAAU-- GG-GA-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rub.gelat3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrivivax gelatinosus str. A3. ACCESSION No information KEYWORDS No information. SOURCE Rubrivivax gelatinosus str. A3. ORGANISM Rubrivivax gelatinosus. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16214|g303828 isolate_name= A3 NB: GB entry had name as Rhodocyclus gelatinosus BASE COUNT 356 a 344 c 471 g 280 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--GC----- ---------- ---------- 241 --------AA -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-UG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( C----UAAUA -----C---) CUCG-GG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA U-AGCUU-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CACAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rub.gelat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 (T). ACCESSION No information KEYWORDS No information. SOURCE Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 (T). ORGANISM Rubrivivax gelatinosus. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17011 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16213|g303827 ATCC 17011 (T) = ATCC 11169 = NCIMB 8290 = DSM 1709 (T) isolate_name= ATH 2.2.1 BASE COUNT 356 a 346 c 471 g 278 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--GC----- ---------- ---------- 241 --------AA -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( U----UAAUA -----C---) CUCG-GG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA U-AGCUU-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -CA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rub.gelati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 (T). ACCESSION No information KEYWORDS No information. SOURCE Rubrivivax gelatinosus str. ATH 2.2.1 ATCC 17011 (T). ORGANISM Rubrivivax gelatinosus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of some purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17011 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60682 ATCC 17011 (T) = ATCC 11169 = NCIMB 8290 = DSM 1709 (T) isolate_name= ATH 2.2.1 BASE COUNT 369 a 348 c 480 g 288 t 2891 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CGAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--GC----- ---------- ---------- 241 --------AA -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-NN N--------- ------GN-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GG- NGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCN-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AU-CU --UCU-GGG( U----UAAUA -----C---) CUCG-GG-NG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA U-AGCUU-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-GGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CUU -CUCAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGNGUAC 1801 GGC-A---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -CA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CNG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GAA- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-NGN GUN-CG-NG- AC........ 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G4.. ACCESSION No information KEYWORDS No information. SOURCE clone G4. ORGANISM clone G4. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91175|g984098 BASE COUNT 87 a 77 c 112 g 68 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GC-UU- 1261 U-GC-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -AC-GG---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------CUG -UUCAG-UAA 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK198 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK198.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK198. ORGANISM clone SMK198. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78638|g509479 BASE COUNT 63 a 55 c 83 g 43 t 4132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... GCG|-GC--G A-NG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---A -CGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCN--C- G--CGU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GCC-G-- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)---CCC -AGA-C-UCC -(U...)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP403 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP403.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP403. ORGANISM clone JAP403. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09776|g495528 BASE COUNT 67 a 61 c 90 g 48 t 4110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CU---- 601 --(------- ----UCG--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Com.testos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Comamonas testosteroni str. RH 1104 ATCC 11996. ACCESSION No information KEYWORDS No information. SOURCE Comamonas testosteroni str. RH 1104 ATCC 11996. ORGANISM Comamonas testosteroni. REFERENCE 1 AUTHORS Yang,D., Oyaizu,Y., Oyaizu,H., Olsen,G.J. and Woese,C.R. TITLE Mitochondrial origins JOURNAL Proc. Natl. Acad. Sci. U.S.A. 82, 4443-4447 (1985) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11996 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11224 Former RDP Sids: Ps.testost ATCC 11996 = NCTC 10698 (T) = NCIMB 8955 isolate_name= RH 1104 NB: former name Pseudomonas testosteroni BASE COUNT 384 a 356 c 482 g 314 t 2840 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CGAACUAU AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUA-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--U- G--CUA---- 661 ----CUAG-- AGC---G-|G CUGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AAC-- GA-A-AA-GC --CUG-GGG( C----UAAUA -----U---) CCCC-GG-GU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---UGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-AUUG U-GAC-UGCA A-GGCUA-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUA-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------G ---CAGG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UC-UC-GCCA -GAA-G-UAG 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGC-GGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brch.denit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachymonas denitrificans str. AS-P1 JCM 9216 (T). ACCESSION No information KEYWORDS No information. SOURCE Brachymonas denitrificans str. AS-P1 JCM 9216 (T). ORGANISM Brachymonas denitrificans. REFERENCE 1 AUTHORS Hiraishi,A., Shin,Y.K. and Sugiyama,J. TITLE Brachymonas denitrificans gen. nov., sp. nov., an aerobic chemoorganotrophic bacterium which contains rhodoquinones, and evolutionary relationships of rhodoquinone producers to bacterial species with various quinone classes JOURNAL J. Gen. Appl. Microbiol. 41, 99-117 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9216 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14320 isolate_name= AS-P1 BASE COUNT 362 a 336 c 464 g 290 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--CUU---- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---AAC-(-- --------UG 541 AG-------- -)-GUU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUUG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----CUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-AC-(GCA A)-GUC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --AG-AAC-- GA-A-AA-GG --CUC-UGG( U----UAAUA -----C---) CUGG-GG-CU 1081 ---------- -------C-A U-GA-CGGU- A-CUG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGCA A-GGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-A----- ---------- 1681 -(UUU-GC)U ---------- ---------- ---------- --------UA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------G ---CAGG--- -AA----UUC 1981 -CGA-A--(- GAGA-)-UUU -G-GAAG--- UG-------- --CUC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-GC-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-CA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T60 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T60. str. T60. ACCESSION No information KEYWORDS No information. SOURCE str. T60. str. T60. ORGANISM str. T60. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualisation of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95839 isolate_name= T60 BASE COUNT 398 a 340 c 464 g 320 t 2854 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-UAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CUAG---U -AAUG-G-GG 421 -GAU-AA-CC A--------- ------CU-- C(-GAAA-)G -AGUG-A--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UC 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--UUA---- 661 ----UUAG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-CUACC-A A|-GCC-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-C-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AAC-- GA-A-AC-GG --UUC-AGA( U----UAAUA -----C---) UCUG-AA-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -UGCG-UUUG U-GAC-UGCA U-AGCUA-GA GCA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-A----- ---------- 1681 -(UUA-AC)U ---------- ---------- ---------- --------UU -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-UCU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACAG--- -AA----GUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUCG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CUG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-AGA-AA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-GCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UC-UC-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-GGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN1af 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN1af.. ACCESSION No information KEYWORDS No information. SOURCE clone JN1af. ORGANISM clone JN1af. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69266|g1177270 BASE COUNT 86 a 77 c 115 g 67 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAAAGCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -UC-C----- ---------- 1681 -(UUA-GC)U ---------- ---------- ---------- --------GG -AUCAG-UAA 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T25 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T25. str. T25. ACCESSION No information KEYWORDS No information. SOURCE str. T25. str. T25. ORGANISM str. T25. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualisation of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95836 isolate_name= T25 BASE COUNT 376 a 352 c 490 g 301 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GUUAA-- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCGG---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UCGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AGC-- GA-A-UA-GG --UCU-UCC( C----UAAUA -----C---) GGGA-GG-CU 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUU-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------G ---UCGG--- -AA----CCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-AU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CUG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T19 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T19. str. T19. ACCESSION No information KEYWORDS No information. SOURCE str. T19. str. T19. ORGANISM str. T19. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97590 isolate_name= T19 BASE COUNT 147 a 127 c 189 g 111 t 3802 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GG (--UU----- ---------- ---------- 241 --------AA -)NN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-NCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCGG---U -CGUG-G-GG 421 -GAU-AA-CA U--------- ------GC-- N(-GAAA-)C -GUGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--CU G--CGA---- 661 ----UCGG-- AGC---G-|U CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-NG) -C-UCACC-A A|-GCC-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C.. .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ........AA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-CU---- ---------- 1681 -(-UU-AC)- ---------- ---------- ---------- -------UGA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T41 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T41. str. T41. ACCESSION No information KEYWORDS No information. SOURCE str. T41. str. T41. ORGANISM str. T41. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualisation of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95838 isolate_name= T41 BASE COUNT 377 a 351 c 487 g 304 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--U------ ---------- ---------- 241 --------AA -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -UG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCGG---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UCGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AGC-- GA-A-AA-GG --CUC-UCU( C----UAAUA -----C---) AGGG-GG-UU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUGC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-A----- ---------- 1681 -(UUU-AC)U ---------- ---------- ---------- --------UA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GUU 1981 -GCU-A--(- GAGA-)-UAG -C-UUCG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD44 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26231|g498434 library_source= unidentified soil bacterium from paddy field BASE COUNT 69 a 62 c 80 g 60 t 4105 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- AA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN11de 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN11de.. ACCESSION No information KEYWORDS No information. SOURCE clone JN11de. ORGANISM clone JN11de. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69276|g1177261 BASE COUNT 85 a 78 c 113 g 68 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-CGGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-CUUG U-GAC-UGCA A-AGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UCU-UC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G1.. ACCESSION No information KEYWORDS No information. SOURCE clone G1. ORGANISM clone G1. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91173|g984096 BASE COUNT 90 a 78 c 111 g 70 t 4027 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ......A-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-CUUG U-GAC-UGCA A-GGCUG-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2048 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2048. str. SBR2048. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2048. str. SBR2048. ORGANISM str. SBR2048. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84585|g871706 isolate_name= SBR2048 BASE COUNT 101 a 89 c 131 g 68 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CA A--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GNCA UGCC-GN-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2067 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2067. str. SBR2067. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2067. str. SBR2067. ORGANISM str. SBR2067. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84600|g871721 isolate_name= SBR2067 BASE COUNT 101 a 90 c 132 g 69 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG A--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1026 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1026. str. SBR1026. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1026. str. SBR1026. ORGANISM str. SBR1026. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84470|g871591 isolate_name= SBR1026 BASE COUNT 102 a 91 c 131 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG A--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUCU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2010 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2010. str. SBR2010. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2010. str. SBR2010. ORGANISM str. SBR2010. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84554|g871675 isolate_name= SBR2010 BASE COUNT 99 a 91 c 131 g 67 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACNC-AUGCA A-GUC-GAAC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG A--------- ------AG-- C(-GAAA-)G -CCUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----CC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GNC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)NG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T20 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T20. str. T20. ACCESSION No information KEYWORDS No information. SOURCE str. T20. str. T20. ORGANISM str. T20. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97591 isolate_name= T20 BASE COUNT 67 a 53 c 84 g 46 t 4126 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---NNAA--- ---)------ -----GG--| -CCUUG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----NA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1091 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1091. str. SBR1091. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1091. str. SBR1091. ORGANISM str. SBR1091. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84519|g871640 isolate_name= SBR1091 BASE COUNT 99 a 91 c 134 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T36 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T36. str. T36. ACCESSION No information KEYWORDS No information. SOURCE str. T36. str. T36. ORGANISM str. T36. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97598 isolate_name= T36 BASE COUNT 160 a 129 c 189 g 126 t 3772 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AU-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UCAA--- ---)------ -----GG--| -CCUUG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-NA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .........A UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGUA U-AGCUA-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-AU---- ---------- 1681 -(-UC-AC)- ---------- ---------- ---------- -------UUU -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUU.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A44t 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A44t.. ACCESSION No information KEYWORDS No information. SOURCE clone A44t. ORGANISM clone A44t. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91467|g987772 BASE COUNT 90 a 69 c 108 g 74 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UCGA U-GGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-AU---- ---------- 1681 -(-UA-GU)- ---------- ---------- ---------- -------UUU -CUCAG-UAA 1741 CG--AA---- ---S-(UAA- ---C)G-CG- UGAA-GUUGA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T59 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T59. str. T59. ACCESSION No information KEYWORDS No information. SOURCE str. T59. str. T59. ORGANISM str. T59. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97596 isolate_name= T59 BASE COUNT 72 a 56 c 95 g 47 t 4106 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-UAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GNC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--NC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCNCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G NNGAU----- -GG|----CA G--AUUA-G- GNA-G---UU 721 GG-UG-GG-( AU-AAA-GG) -C-NNACA-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G......(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T69 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T69. str. T69. ACCESSION No information KEYWORDS No information. SOURCE str. T69. str. T69. ORGANISM str. T69. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97593 isolate_name= T69 BASE COUNT 67 a 56 c 87 g 50 t 4116 others ORIGIN 1 .......... .......... .......... .......... .GGGUU(U-G A)U-UAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC.... .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2089 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2089. str. SBR2089. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2089. str. SBR2089. ORGANISM str. SBR2089. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84619|g871740 isolate_name= SBR2089 BASE COUNT 97 a 90 c 136 g 68 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UN--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GGGA-G G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T33 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T33. str. T33. ACCESSION No information KEYWORDS No information. SOURCE str. T33. str. T33. ORGANISM str. T33. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97595 isolate_name= T33 BASE COUNT 155 a 135 c 197 g 121 t 3768 others ORIGIN 1 .......... .......... .......... .......... .GGGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGN---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -A..)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUAG U-GAC-UGUA U-AGCUA-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1105 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1105. str. SBR1105. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1105. str. SBR1105. ORGANISM str. SBR1105. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84532|g871653 isolate_name= SBR1105 BASE COUNT 96 a 88 c 134 g 73 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G NCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2053 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2053. str. SBR2053. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2053. str. SBR2053. ORGANISM str. SBR2053. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84589|g871710 isolate_name= SBR2053 BASE COUNT 95 a 88 c 135 g 73 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1036 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1036. str. SBR1036. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1036. str. SBR1036. ORGANISM str. SBR1036. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84479|g871600 isolate_name= SBR1036 BASE COUNT 96 a 88 c 134 g 72 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG G--------- ------AG-- C(-GAAA-)G -CUUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UC-GG --)GC-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2041 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2041. str. SBR2041. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2041. str. SBR2041. ORGANISM str. SBR2041. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84580|g871701 isolate_name= SBR2041 BASE COUNT 96 a 92 c 133 g 69 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGN-CU--U ACNC-AUGCA A-GUC-GAAC 121 G--GU-AA-C UG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1084 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1084. str. SBR1084. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1084. str. SBR1084. ORGANISM str. SBR1084. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84514|g871635 isolate_name= SBR1084 BASE COUNT 98 a 92 c 135 g 67 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGG-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-AUCGG- A-A--CGU-G C-CCGA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGG---- 661 ----ACGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( AU-AAA-AG) -C-UUACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK200 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK200.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK200. ORGANISM clone SMK200. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78641|g509482 BASE COUNT 53 a 48 c 70 g 37 t 4168 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .....GCGA- 361 -A-CN-GG-U GAGU---AAU -AC-NUCGN- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)- -CGUA----C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CUC--- 601 --(------- ---GCAA--- ---)------ ----GN---| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GN|-----A G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UG- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG.... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2018 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2018. str. SBR2018. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2018. str. SBR2018. ORGANISM str. SBR2018. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84562|g871683 isolate_name= SBR2018 BASE COUNT 96 a 91 c 137 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGG-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GU----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UC 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UUACC-A A|-GCC-UC- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-AGA UCCA|-GCAA UGNC-GC-GU 961 G-C-AG-G-A C-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhf.ferme3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoferax fermentans str. FR3. ACCESSION No information KEYWORDS No information. SOURCE Rhodoferax fermentans str. FR3. ORGANISM Rhodoferax fermentans. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16212|g303832 isolate_name= FR3 BASE COUNT 369 a 341 c 457 g 286 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U AAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------CA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AGC-- GA-A-AA-GG --CUU-CUC( C----UAAUA -----C---) GAGG-GG-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- NC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UCUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -CU-GU-UGG -GU-C----- ---------- 1681 -(UCU-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--NA---- --AC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -CUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 C-CCUUA-CC CAC-CU-CUG ACA-UG|--- ---------U ---ACGG--- -AA----CCC 1981 -UNN-A--(- GAGA-)-UAG -A-GGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhf.ferme2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoferax fermentans str. FR2. ACCESSION No information KEYWORDS No information. SOURCE Rhodoferax fermentans str. FR2. ORGANISM Rhodoferax fermentans. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16211|g303831 isolate_name= FR2 BASE COUNT 369 a 341 c 457 g 288 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U AAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------CA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AGC-- GA-A-AA-GG --CUU-CUC( C----UAAUA -----C---) GAGG-GG-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UCUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -CU-GU-UGG -GU-C----- ---------- 1681 -(UCU-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--NA---- --AC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -CUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 C-CCUUA-CC CAC-CU-CUG ACA-UG|--- ---------U ---ACGG--- -AA----CCC 1981 -UNU-A--(- GAGA-)-UAG -A-GGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A45L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A45L.. ACCESSION No information KEYWORDS No information. SOURCE clone A45L. ORGANISM clone A45L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91468|g987773 BASE COUNT 88 a 75 c 114 g 74 t 4025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --S--(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGUG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhf.limosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodoferax limosa str. 7087. ACCESSION No information KEYWORDS No information. SOURCE Rhodoferax limosa str. 7087. ORGANISM Rhodoferax limosa. REFERENCE 1 AUTHORS Koivula,T. and Hantula,J. TITLE Evidence for two novel bacterial species: Rhodoferax limosa sp. nov. and Comamonas baltica sp. nov. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46235|g559521 isolate_name= 7087 BASE COUNT 107 a 100 c 126 g 95 t 3948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .....G-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T14 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T14. str. T14. ACCESSION No information KEYWORDS No information. SOURCE str. T14. str. T14. ORGANISM str. T14. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97597 isolate_name= T14 BASE COUNT 126 a 108 c 152 g 95 t 3895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- C(-GAAA-)G -CCGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----GUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---NU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG..|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ........AA UC-GGAAUUA -CU-GGGC|G UAUA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UUUG U-GAC-UGCA A-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUU-GC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Com.baltic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Comamonas baltica.. ACCESSION No information KEYWORDS No information. SOURCE Comamonas baltica. ORGANISM Comamonas baltica. REFERENCE 1 AUTHORS Koivula,T. and Hantula,J. TITLE Evidence for two novel bacterial species: Rhodoferax limosa sp. nov. and Comamonas baltica sp. nov. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46256|g559887 BASE COUNT 109 a 99 c 125 g 95 t 3948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .....G-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GUG 1981 -ACC-A--(- GAGA-)-UGG -A-CAUG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T3. str. T3. ACCESSION No information KEYWORDS No information. SOURCE str. T3. str. T3. ORGANISM str. T3. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualisation of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95837 isolate_name= T3 BASE COUNT 392 a 357 c 472 g 308 t 2847 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G UGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -CGCG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GGAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----CG-A-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAC-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-C-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AAC-- GA-A-AA-AG --UCU-ACC( C----UAAUA -----C---) GGUG-GG-CU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 A-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UUUG U-GAC-UGUA U-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GC-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAC-AAAG -CC-A-GUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A62L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A62L.. ACCESSION No information KEYWORDS No information. SOURCE clone A62L. ORGANISM clone A62L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91485|g987790 BASE COUNT 91 a 78 c 114 g 73 t 4020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-ACC- 1321 -UGCA-UUUG U-GAC-UGUA U-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-NNN 1741 NN--NA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2002 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2002. str. SBR2002. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2002. str. SBR2002. ORGANISM str. SBR2002. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84547|g871668 isolate_name= SBR2002 BASE COUNT 96 a 96 c 136 g 65 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------G GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AU-AUCGG- A-A--CGU-G C-CCAG---U -GAUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--UCA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GNC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T67 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T67. str. T67. ACCESSION No information KEYWORDS No information. SOURCE str. T67. str. T67. ORGANISM str. T67. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97592 isolate_name= T67 BASE COUNT 70 a 61 c 91 g 54 t 4100 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GN (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UCACC-A A|-GGC-NA- CGA------- -----UC-UG 781 U-AG-C-UG| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T73 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T73. str. T73. ACCESSION No information KEYWORDS No information. SOURCE str. T73. str. T73. ORGANISM str. T73. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97594 isolate_name= T73 BASE COUNT 68 a 55 c 88 g 51 t 4114 others ORIGIN 1 .......... .......... .......... .......... .GGGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UCACA-A A|-GG..... .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.34P 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 34-P. str. 34-P. ACCESSION No information KEYWORDS No information. SOURCE str. 34-P. str. 34-P. ORGANISM str. 34-P. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14585|g975738 isolate_name= 34-P BASE COUNT 384 a 322 c 444 g 301 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-A GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------A (--GC----- ---------- ---------- 241 --------AA -)U------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ACU|UGA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- A(-GAAA-)U -UUAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA-CUC---- 601 --(------- ---GCAA--- ---)------ -----GAG-| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CUGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-UG-( GU-AAA-AG) -C-GCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AK-C-UG| -G-UUU--(G -AGA)-GAAC ----GA-C-- CAS-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-C-AG-G-A U-AGAA-G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AAC-- GA-A-AC-GG --UGC-UCU( U----UAAUA -----A---) AGAG-UG-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-AU-AAG|A CAG---UUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UCUG U-GAC-UGUA U-AGCUA-GA GUA-----CG G-UA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 ACC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-G----- ---------- 1681 -(CAU-UA)G ---------- ---------- ---------- --------UA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----CUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGA-U-GG -UA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G14 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G14.. ACCESSION No information KEYWORDS No information. SOURCE clone G14. ORGANISM clone G14. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91186|g984109 BASE COUNT 86 a 71 c 106 g 66 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......UAG |-GGU..... 1201 ......UUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|A CAG---A... .........C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGAC-UUUG U-GAC-UGCA U-CGCUG-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-GG---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------CCA -UUUAG-UAC 1741 CG--UA---- ---C-(KAA- ---C)G-AG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G2.. ACCESSION No information KEYWORDS No information. SOURCE clone G2. ORGANISM clone G2. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91179|g984102 BASE COUNT 87 a 78 c 111 g 68 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|A CAG---AGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UUUG U-GAC-UGCA U-CGCUG-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUC-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vrv.pardox 4376 bp RNA RNA 02-JUL-1998 DEFINITION Variovorax paradoxus. ACCESSION No information KEYWORDS No information. SOURCE Variovorax paradoxus. ORGANISM Variovorax paradoxus. REFERENCE 1 AUTHORS Hiraishi,A., Shin,Y.K. and Sugiyama,J. TITLE Brachymonas denitrificans gen. nov., sp. nov, an aerobic chemoorganotrophic bacterium which contains rhodoquinones, and evolutionary relationships of rhodoquinone producers to bacterial species with various quinone classes JOURNAL J. Gen. Appl. Microbiol. 41, 99-117 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30793|g516855 BASE COUNT 369 a 338 c 456 g 291 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAGN-)G -CUGU-G--C UAAUNCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UUUU-GU-AC 1021 --GG-AAC-- GA-A-AC-GG --CCU-UUU( C----UAAUA -----A---) AGAG-GG-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-AA- 1261 U-GU-AAG|A CAG---UUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG U-GAC-UGCA U-UGCUG-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GU-C----- ---------- 1681 -(UUN-AC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-U-GG -UA--CAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP301 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP301.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP301. ORGANISM clone JAP301. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09777|g495529 BASE COUNT 70 a 65 c 90 g 43 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- A--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UU- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Stripa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stripa mine-derived. ACCESSION No information KEYWORDS No information. SOURCE Stripa mine-derived. ORGANISM Stripa mine-derived. REFERENCE 1 AUTHORS Ekendahl,S. and Pedersen,K. TITLE Carbon transformations by attached bacterial populations in granitic groundwater from deep crystalline bed-rock of the Stripa research mine JOURNAL Microbiology 140, 1565-1573 (1994) STANDARD No information REFERENCE 2 AUTHORS Ekendahl,S., Arlinger,J., Stahl,F. and Pedersen,K. TITLE Characterization of attached bacterial populations in deep granitic ground water from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy JOURNAL Microbiology 140, 1575-1583 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20811|g439464 BASE COUNT 214 a 206 c 273 g 183 t 3500 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .GCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCG-CUUG U-GAC-UGCA U-CGCUG-GA GUG-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -UCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UUG -GG-UC---- -U-------- 1681 -(CUU-UC)U ---------- ---------- ---------- --------GA -CUCAG-UAA 1741 CG---A---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC CAC-CU-UUG ACA-UG|--- ---------U ---ACGG--- -AA----UUU 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-GG -UG--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAAAG GGU-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCAUC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGC... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.T65 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. T65. str. T65. ACCESSION No information KEYWORDS No information. SOURCE str. T65. str. T65. ORGANISM str. T65. REFERENCE 1 AUTHORS Amann,R., Snaidr,J., Wagner,M., Ludwig,W. and Schleifer,K.H. TITLE In situ vizualization of high genetic diversity in a natural microbial community JOURNAL J. Bacteriol. 178, 3496-3500 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97599 isolate_name= T65 BASE COUNT 72 a 58 c 93 g 52 t 4101 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C...| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2005 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2005. str. SBR2005. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2005. str. SBR2005. ORGANISM str. SBR2005. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84550|g871671 isolate_name= SBR2005 BASE COUNT 99 a 89 c 131 g 69 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G NCGAU----- -AU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- NG-GN-(GCA A)-GNC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1095 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1095. str. SBR1095. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1095. str. SBR1095. ORGANISM str. SBR1095. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84523|g871644 isolate_name= SBR1095 BASE COUNT 99 a 90 c 135 g 67 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGG-GU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1112 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1112. str. SBR1112. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1112. str. SBR1112. ORGANISM str. SBR1112. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84538|g871659 isolate_name= SBR1112 BASE COUNT 100 a 92 c 133 g 67 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UAGC-GGA-A -UGG-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUC G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1072 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1072. str. SBR1072. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1072. str. SBR1072. ORGANISM str. SBR1072. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84504|g871625 isolate_name= SBR1072 BASE COUNT 99 a 91 c 134 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGG-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1079 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1079. str. SBR1079. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1079. str. SBR1079. ORGANISM str. SBR1079. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84511|g871632 isolate_name= SBR1079 BASE COUNT 99 a 90 c 134 g 69 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGG-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G UCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1027 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1027. str. SBR1027. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1027. str. SBR1027. ORGANISM str. SBR1027. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84471|g871592 isolate_name= SBR1027 BASE COUNT 100 a 91 c 133 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G GCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2020 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2020. str. SBR2020. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2020. str. SBR2020. ORGANISM str. SBR2020. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84563|g871684 isolate_name= SBR2020 BASE COUNT 98 a 89 c 135 g 66 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UN--G ACNC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G GCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -GCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AA- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GNC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2098 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2098. str. SBR2098. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2098. str. SBR2098. ORGANISM str. SBR2098. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84627|g871748 isolate_name= SBR2098 BASE COUNT 99 a 92 c 133 g 67 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2012 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2012. str. SBR2012. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2012. str. SBR2012. ORGANISM str. SBR2012. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84556|g871677 isolate_name= SBR2012 BASE COUNT 98 a 91 c 133 g 68 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACNC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2071 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2071. str. SBR2071. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2071. str. SBR2071. ORGANISM str. SBR2071. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84603|g871724 isolate_name= SBR2071 BASE COUNT 99 a 92 c 133 g 68 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1070 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1070. str. SBR1070. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1070. str. SBR1070. ORGANISM str. SBR1070. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84502|g871623 isolate_name= SBR1070 BASE COUNT 99 a 91 c 133 g 68 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.3 BORDETELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.3 BORDETELLA_SUBGROUP. ORGANISM 2.14.2.3 BORDETELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lau.mirabi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lautropia mirabilis str. AB2188 NCTC 12852 (T). ACCESSION No information KEYWORDS No information. SOURCE Lautropia mirabilis str. AB2188 NCTC 12852 (T). ORGANISM Lautropia mirabilis. REFERENCE 1 AUTHORS Gerner-Smidt,P., Keiser-Nielsen,H., Dorsch,M., Stackebrant,E ., Blom,J., Christensen,A.C., Christensen,J.J., Freideriksen ,W., Hoffmann,S., Holten-Anderson,W., Ying,Y.T. and Ursing,J . TITLE Lautropia mirabilis gen. nov., sp. nov., a gram-negative motile coccus with unusual morphology isolated from the human mouth JOURNAL Microbiology 140, 1787-1797 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12852 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73223|g535118 Former RDP Sids: str.grmneg isolate_name= AB2188 BASE COUNT 365 a 332 c 461 g 282 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GG|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CG 1021 --GG-AAC-- GA-A-AA-GG --ACU-GUG( C----CAAUA -----C---) CACG-GU-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GC-AAG|A CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG U-GAC-UGCA A-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCAU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GG-AU---- ---------- 1681 -(-UA-AU)- ---------- ---------- ---------- -------UUC -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----CCC 1981 -UGA-A--(- GAGA-)-UUU -G-GGGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGAG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 G-AUG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAGGG---C G-CU-UA-CC A-CGGU-AGG GCU-CA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sut.wdswr3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sutterella wadsworthensis str. WAL 9054. ACCESSION No information KEYWORDS No information. SOURCE Sutterella wadsworthensis str. WAL 9054. ORGANISM Sutterella wadsworthensis. REFERENCE 1 AUTHORS Wexler,H.M., Molitoris,E., Reeves,D., McTeague,M., Summanen ,P., Duncan,J.F., Wilson,K.H. and Finegold,S.M. TITLE Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates JOURNAL Int. J. Syst. Bacteriol. 46, 252-258 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37786|g854704 isolate_name= WAL 9054 NB: type strain of genus is WAL 9799 (=ATCC 51579) BASE COUNT 367 a 343 c 465 g 279 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUUC---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------CC-- C(-GAAA-)G -GGCA-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CUG---- 661 ----GAAG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUGC| UUUU-GU-CA 1021 --GG-GAC-- GA-A-AA-GG --GAU-GCG( A----UAACA -----C---) CGUA-UU-CC 1081 ---------- -------G-C U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 U-GU-AAG|A UAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UAUA U-GAC-UGCA G-GACUU-GA GUU-----UG U-CA-GAGGA GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCUCUG-- ---------- ---------- ---------G 1501 GAC--AU-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -GG-AC---- ---------- 1681 -(-GA-UA)- ---------- ---------- ---------- -------GUC -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|C-CCU- G-GGGAGAGC 1801 GGU-C---(U CAA)---G-A UU-AAAACUC -ACA-GGAAU UG-UCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----GGU 1981 -CUG-A--(- GAGA-)-UCA -G-GCCG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| UCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 C-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UC-ACCA -GAA-G-ACG 3121 U-UUG-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-C G-GC-GU-CC A-CGGU-GGG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sut.wdswr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sutterella wadsworthensis str. WAL 7877. ACCESSION No information KEYWORDS No information. SOURCE Sutterella wadsworthensis str. WAL 7877. ORGANISM Sutterella wadsworthensis. REFERENCE 1 AUTHORS Wexler,H.M., Molitoris,E., Reeves,D., McTeague,M., Summanen ,P., Duncan,J.F., Wilson,K.H. and Finegold,S.M. TITLE Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates JOURNAL Int. J. Syst. Bacteriol. 46, 252-258 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37785|g854703 biol_source= appendix isolate_name= WAL 7877 BASE COUNT 364 a 337 c 447 g 271 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUUC---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------CC-- C(-GAAA-)G -GGCA-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CUG---- 661 ----GAAG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUGC| UUUU-GU-CA 1021 --GG-GAC-- GA-A-AA-GG --GAU-GCG( A----UAACA -----C---) CGUA-UU-CC 1081 ---------- -------G-C U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 U-GU-AAG|A UAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UAUA U-GAC-UGCA G-GACUU-GA GUU-----UG U-CA-GAGGA GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCUCUG-- ---------- ---------- ---------G 1501 GAC--AU-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -GG-AC---- ---------- 1681 -(-GA-UA)- ---------- ---------- ---------- -------GUC -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|C-CCU- G-GGGAGAGC 1801 GGU-C---(U CAA)---G-A UU-AAAACUC -ACA-GGAAU UG-UCGGG-G -A-C-CC--C 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----GGU 1981 -CUG-A--(- GAGA-)-UCA -G-GCCG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| UCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 C-UCA-CA-C GUC--AUACA AUGGU-C-GG -AA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UC-ACCA -GAA-G-ACG 3121 U-UUG-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAA..... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_N 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Weller,R., Bateson,M.M., Heimbuch,B.K., Kopczynski,E.D. and Ward,D. TITLE Uncultivated cyanobacteria, Chloroflexus-like and Spirochete-like inhabitants of a hot spring microbial mat JOURNAL Appl. Environ. Microbiol. 58, 3964-3969 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microbiol. Ecol. 12, 219-286 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L05931 (bases 1 to 170) library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: L04712 originally linked into paper. Sequence contained approx. 30% ambiguous bases, the majority of which spanned 126 to 214. This portion of the sequence was deleted, the remainder being broken up into two segments, L05930 and L05931. IDENT: member of Rub.gelati group BASE COUNT 72 a 71 c 84 g 48 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 ......A-AG CGGUGG-AUG A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----CCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGG--- YG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CGG.. .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .........G A-CU-G-CCG --GU(-GA-C AA)-ACN-G- -GANN-A-NN 2761 N-NN-GGG-A UG-ACG--UC -A-WGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CNN)NN-G- ---------- GA-GCCAA-U CCCAA-AAAA -CC-G-GUC- GUNNNNNNGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GA..... .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD37 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26224|g498426 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 67 c 83 g 56 t 4105 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--GAU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AUC-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- AA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S14 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S14. str. S14. ACCESSION No information KEYWORDS No information. SOURCE str. S14. str. S14. ORGANISM str. S14. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31494|g1143137 isolate_name= S14 BASE COUNT 221 a 193 c 261 g 179 t 3522 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-GGUG-C-- 1201 NAG-CGUUCA UC-GGAAUUA -CU-GGGN|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-N(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GACUA-GA GUA-----UG U-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GNA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AN-CU-- -------A|G -CU-GU-UGG -GC-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGG -CUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G CA-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UA-CCC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GNG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC GGUGA----C 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S2. str. S2. ACCESSION No information KEYWORDS No information. SOURCE str. S2. str. S2. ORGANISM str. S2. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31495|g1143138 isolate_name= S2 BASE COUNT 222 a 196 c 258 g 181 t 3519 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-GGUG-A-- 1201 -AG-CNUUAN UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GACUA-GA GUA-----UG U-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUG-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AU-CU-- -------A|G -CU-GU-UGG -NC-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGG -CUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-N CCG-CGGUG- AAUAC-GUC- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tay.eqgeni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Taylorella equigenitalis. ACCESSION No information KEYWORDS No information. SOURCE Taylorella equigenitalis. ORGANISM Taylorella equigenitalis. REFERENCE 1 AUTHORS Bleumink-Pluym,N.M.C., Van Dijk,L., Van Vliet,A.H.M., van der Giessen,J.W. and van der Zeijst,B.A. TITLE Phylogenetic position of Taylorella equigenitalis determined by analysis of amplified 16S ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 618-621 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68645 BASE COUNT 397 a 323 c 471 g 308 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UAGC-GGA-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GAGGGG- GA--UCA--- 601 --(------- ---GAGA--- ---)------ ----UGA--| -CCUUU--U- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCUA|-GCCA UUCC-GC-GU 961 G-U-GC-G-A U-UGAA-G-G CC(--UU-GG --)GG-UUGU AAA--GCAC| UUUU-GU-CA 1021 --GG-GAA-- GA-A-AA-GG --UUU-GUG( U----UAAUA -----C---) CAUG-GA-CU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -ACCGGCA-A ACUAC-GGG( CCA--GCGGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A GAG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUC U-AAC-UGUC G-AGCUA-GA GUA-----UG U-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GA-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGU -CUUGG-UAG 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---UUGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---A(---GU ---AAG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-AG -GA--CAGAG GGA-A-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAC -CU-G-AUC- GUAGUCCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG C(GGA-A)GC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alc.faecal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alcaligenes faecalis. ACCESSION No information KEYWORDS No information. SOURCE Alcaligenes faecalis. ORGANISM Alcaligenes faecalis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) Chromobacterium, Eikenella, Kingella, Neisseria, JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22508 BASE COUNT 373 a 339 c 449 g 295 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UAGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CU-- C(-GAAA-)G -AGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCU--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UNA UCCA|-GCCA UCCC-GC-GU 961 G-U-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUU-GG-CA 1021 --GA-GAA-- GA-A-AA-GG --UAU-CUC( C----UAAUA -----C---) GAGA-UN-CU 1081 ---------- -------G-C U-GA-CGGU- A-UCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUNC-GUG( CCA--GCNGC CNCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GUG-UAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCN-UUUU U-AAC-UGCC G-AGCUA-GA GUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA CUGACG-CUC AG-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------GGC -CUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----AGC 1981 -CGA-A--(- GAGA-)-UUU -G-GCCG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACC AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CN-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAC -CC-N-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-CU -AA-CN---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C U-CU-UN-CC A-CGGU-CGN AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alc.dnitrf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alcaligenes denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Alcaligenes denitrificans. ORGANISM Alcaligenes denitrificans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J. and Bright,P.L. TITLE Chromobacterium, Eikenella, Kingella, Neisseria, Simonsiella and Vitreoscilla species comprise a major branch of the beta group Proteobacteria by 16S rRNA sequence comparison: transfer of Eikenella and Simonsiella to the family Neisseriacae (emend.) JOURNAL Int. J. Syst. Bacteriol. 39, 258-266 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22509 Former RDP Sids: Alc.xyloso ATCC 15173 (T) = NCTC 8582 = IFO 15125 = ICPB 4221 = DSM 30026 = CIP 7715 NB: former name Alcaligenes xylosoxydans BASE COUNT 371 a 341 c 452 g 281 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-N A)U-CCN|-G 61 GCUCAG-AUU -GAAC-GC-- UAGC-GGG-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GA (--CUU---- ---------- ---------- 241 --------CG -)UC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)N -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---NCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCNNGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GU --CGU-GGG( U----UAAUA -----C---) CCCG-CG-GC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GAG-C(- UN-A)A-CUU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GGCUA-GA GUG-----UG U-NA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(UUC-AN)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUU -A-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-NN-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACC AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-NCC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CN---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C N-AU-UA-CC A-CGGN-AGN AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pM10 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pM10.. ACCESSION No information KEYWORDS No information. SOURCE clone pM10. ORGANISM clone pM10. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27859|g903930 BASE COUNT 98 a 105 c 130 g 85 t 3958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0272 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0272. str. B0272. ACCESSION No information KEYWORDS No information. SOURCE str. B0272. str. B0272. ORGANISM str. B0272. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12218|g529297 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0272 BASE COUNT 220 a 194 c 259 g 173 t 3530 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ....GUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UNCC G-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAA- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--UA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UNC 1981 -CGA-A--(- GAGA-)-UNU -G-GUAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-N-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K6.. ACCESSION No information KEYWORDS No information. SOURCE clone K6. ORGANISM clone K6. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91521|g987796 BASE COUNT 92 a 75 c 104 g 69 t 4036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGU-AA UC-GGAAUUA -CU-GG-C|C UAAA--C-UC GCGCAAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -G--C----- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Blcrcu 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Du,Y., Maslov,D.A. and Chang,K.P. TITLE Monophyletic origin of beta-division proteobacterial endosymbionts and their coevolution with insect trypanosomatid protozoa Blastocrithidia culicis and Crithidia spp. JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91 (18), 8437-8441 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L29265 (bases 1 to 1527) endosymbiont_of= Blastocrithidia culicis common_name= kinetoplastid BASE COUNT 398 a 344 c 470 g 315 t 2849 others ORIGIN 1 .......... .......... .......... ..GAGUUUCC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UAGC-GGA-A -UGC-UU--U ACAC-AUGCA G-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)U -CGAG----C UAAUACC-GC 481 AU-A-U---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AUC---G-|G CCGAU----- -AC|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-GAA-- GA-A-AC-AG --UGU-UGG( A----UAAUA -----C---) CCAG-CA-UG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AGG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-AACUA-GA GCG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCAU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA--)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GA-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGU -CUUAG-U-G 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUAG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGGG--- UG-------- --CUU----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AAG------- ----AA---| CUA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAGGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Critsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Du,Y., Maslov,D.A. and Chang,K.-P. TITLE Monophyletic origin of Beta-division proteobacterial endosymbionts and their coevolution with insect trypanosomatid protozoa Blastocrithidia culicis and Crithidia spp. JOURNAL Proc. Natl. Acad. Sci. U.S.A. 91, 8437-8441 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L29303|g459861 (bases 1 to 1531) symbiont_of= Crithidia sp. BASE COUNT 399 a 345 c 467 g 320 t 2845 others ORIGIN 1 .......... .......... .......... ..UGUAAUCC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UAGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CCAG---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUG----C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUGG-- AUC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-GAA-- GA-A-AU-AG --CAU-UGG( C----UAAUA -----U---) CUGA-UG-UG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-GAC-UACC G-AACUA-GA GUG-----UA C-CA-GAGGG AGG-U|AGAA 1381 UU-CCGCAU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCUA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GGU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GA-UC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GAU -CUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUAG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUU----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AAG------- ----AA---| CUA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -CAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAC-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.avium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella avium. ACCESSION No information KEYWORDS No information. SOURCE Bordetella avium. ORGANISM Bordetella avium. REFERENCE 1 AUTHORS O'Connor,S.P. TITLE Phylogeny of the genus Bordetella JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04947|g451587 BASE COUNT 370 a 344 c 458 g 284 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UUGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CUAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUAG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-NGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AA-GG --CGC-AGG( C----UAAUA -----C---) CUUG-CG-CA 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-C------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UG -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUNGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-NGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.bronch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella bronchiseptica str. S-1. ACCESSION No information KEYWORDS No information. SOURCE Bordetella bronchiseptica str. S-1. ORGANISM Bordetella bronchiseptica. REFERENCE 1 AUTHORS ,T. Taneda,A., Futo,S., Mitsuse,S., Seto,Y., Okada,M. and Sakano TITLE on 16S ribosomal RNA sequences Oligonucleotide probes for Bordatella bronchiseptica based JOURNAL Vet. Microbiol. 42, 297-305 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57026 biol_source= pig isolate_name= S-1 BASE COUNT 378 a 363 c 490 g 301 t 2844 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GG --CAC-GGG( C----UAAUA -----U---) CCUG-UG-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.bronc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella bronchiseptica str. Dog 71 ATCC 19395 (T). ACCESSION No information KEYWORDS No information. SOURCE Bordetella bronchiseptica str. Dog 71 ATCC 19395 (T). ORGANISM Bordetella bronchiseptica. REFERENCE 1 AUTHORS O'Connor,S.P. TITLE Phylogeny of the genus Bordetella JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19395 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04948|g451588 Former RDP Sids: Brd.brchsp ATCC 19395 (T) = NCTC 452 biol_source= lung of dog with distemper isolate_name= Dog 71 BASE COUNT 361 a 348 c 464 g 282 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-NGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GG --CAC-GGG( C----UAAUA -----U---) CCUG-UG-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUNCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUNGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-NGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.pperts 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella parapertussis. ACCESSION No information KEYWORDS No information. SOURCE Bordetella parapertussis. ORGANISM Bordetella parapertussis. REFERENCE 1 AUTHORS O'Connor,S.P. TITLE Phylogeny of the genus Bordetella JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04949|g451589 BASE COUNT 363 a 347 c 465 g 283 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GG --CAC-GGG( C----UAAUA -----U---) CCUG-UG-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUNGU-C-GG -GA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CNC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.holmes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella holmesii. ACCESSION No information KEYWORDS No information. SOURCE Bordetella holmesii. ORGANISM Bordetella holmesii. REFERENCE 1 AUTHORS Weyant,R.S., Hollis,D.G., Weaver,R.E., Amin,M.F.M., Steigerwalt,A.G., O'Connor,S.P., Whitney,A.M., Daneshvar,M.I ., Moss,C.W. and Brenner,D.J. TITLE Bordetella holmesii sp. nov., a new gram-negative species species associated with septicemia JOURNAL J. Clin. Microbiol. 33, 1-7 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04820|g517413 CDC F5101 = ATCC 51541 BASE COUNT 374 a 359 c 490 g 302 t 2851 others ORIGIN 1 .......... .......... .......... ........UA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GG --CAC-GGG( C----UAAUA -----U---) CCUG-UG-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-AGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAA--UA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGC- GUGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACU--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brd.pertus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bordetella pertussis. ACCESSION No information KEYWORDS No information. SOURCE Bordetella pertussis. ORGANISM Bordetella pertussis. REFERENCE 1 AUTHORS O'Connor,S.P. TITLE Phylogeny of the genus Bordetella JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04950|g451590 BASE COUNT 361 a 344 c 468 g 285 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGG-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-G C-CCAG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- A--CUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GG-CA 1021 --GG-AAA-- GA-A-AC-GG --CAC-GGG( C----UAAUA -----U---) CCUG-UG-CA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UC- 1261 G-GA-AAG|A AAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU U-AAC-UACC G-GGCUA-GA GUG-----UG U-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GAU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -GG-CC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GGC -CUUGG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UG -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -GA--CAGAG GGU-U-G-N- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-GUC- GUNGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AU-UA-CC A-CGGU-AGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.4 ENV.A2G_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.4 ENV.A2G_GROUP. ORGANISM 2.14.2.4 ENV.A2G_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A4o 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A4o.. ACCESSION No information KEYWORDS No information. SOURCE clone A4o. ORGANISM clone A4o. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91427|g987732 BASE COUNT 82 a 71 c 110 g 63 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-CUUG U-GAC-UGCA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCGNGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -CUUAG-UAC 1741 CG--CA---- ---S-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A2g 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A2g.. ACCESSION No information KEYWORDS No information. SOURCE clone A2g. ORGANISM clone A2g. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91425|g987730 BASE COUNT 87 a 70 c 107 g 70 t 4042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ....CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -AG-GAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -UUUAG-UAC 1741 CG--CA---- --S--(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G17.. ACCESSION No information KEYWORDS No information. SOURCE clone G17. ORGANISM clone G17. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91611|g987727 BASE COUNT 88 a 72 c 116 g 69 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUS AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -CUUAG-UAC 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A3g 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91426 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 71 a 54 c 85 g 57 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|..U-UU- 1261 G-UU-AAN|N NAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----UG G-NN-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -CUUAG-UAC 1741 CG--C..... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G19 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G19.. ACCESSION No information KEYWORDS No information. SOURCE clone G19. ORGANISM clone G19. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91271|g987019 BASE COUNT 90 a 74 c 116 g 66 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |--GUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAAAGCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGCG-UUUG U-GAC-UGCC A-AGCUA-GA GUA-----CA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UAAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC C--AA-CU-- -------G|G -GU-GU-UGG -GG-AAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUC -CUUAG-UAC 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGG C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G13 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G13.. ACCESSION No information KEYWORDS No information. SOURCE clone G13. ORGANISM clone G13. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91185|g984108 BASE COUNT 87 a 74 c 114 g 70 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 C-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCG A-GACUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU-AGA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC C--AA-CU-- -------A|G -GU-GU-UGG -GU-AA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UU- -CCUUA-UAC 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUU-G C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN7b 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN7b.. ACCESSION No information KEYWORDS No information. SOURCE clone JN7b. ORGANISM clone JN7b. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69272|g1177276 BASE COUNT 87 a 75 c 115 g 69 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GACUC-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC C--AA-CU-- -------A|G -GU-GU-UGG -GG-AA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UUC -CUUAG-UAC 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGG C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G16 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G16.. ACCESSION No information KEYWORDS No information. SOURCE clone G16. ORGANISM clone G16. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91188|g984111 BASE COUNT 86 a 75 c 116 g 69 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GACUU-GA GUG-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------A|G -GU-GU-UGG -GG-AA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UUU -CUUAG-UAC 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUCG C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G10 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G10.. ACCESSION No information KEYWORDS No information. SOURCE clone G10. ORGANISM clone G10. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91182|g984105 BASE COUNT 89 a 74 c 111 g 68 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUK-C-- 1201 GAG-CGUUAA UC-GGAAWUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-CC -G|-GU-UU- 1261 --AU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGUA A-GACUC-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------A|G -GU-GU-UGG -AG-AA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UUC -UUUAG-UAC 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUCG C|C|G-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.5 SPR.VOLUTANS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.5 SPR.VOLUTANS_GROUP. ORGANISM 2.14.2.5 SPR.VOLUTANS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2062 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2062. str. SBR2062. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2062. str. SBR2062. ORGANISM str. SBR2062. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84596|g871717 isolate_name= SBR2062 BASE COUNT 93 a 92 c 138 g 72 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AC (--UU----- ---------- ---------- 241 --------CG -)GU--CC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CUAU---C -AGUG-G-GG 421 -GAU-AA-CG C--------- ------UU-- C(-GAAA-)G -GAGU-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------CG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUG---- 661 ----AUAG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1096 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1096. str. SBR1096. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1096. str. SBR1096. ORGANISM str. SBR1096. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84524|g871645 isolate_name= SBR1096 BASE COUNT 102 a 89 c 134 g 69 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNGC-GGC-G -UGG-NU--U ACAC-AUACA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A C-CUUU---U -AGUC-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GA 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GGCGGG- GA--UCG--- 601 --(------- ---GAAA--- ---)------ ----CGA--| -CCUGU--C- G--CUG---- 661 ----AAAG-- AGC---G-|G CCGAU----- -GG|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -U-UCU--(G -AGA)-AGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thiopa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thioparus. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thioparus. ORGANISM Thiobacillus thioparus. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79426 ATCC 8158 = NCIMB 8370 = DSM 505 (T) BASE COUNT 318 a 277 c 391 g 243 t 3147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ......G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUNU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---NCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--UUA---- 661 ----UUCG-- AGC---G-|G CCGAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CU 1021 --GG-AAC-- GA-A-AC-GG --UAC-GCU( C----UAACA -----U---) AGCG-UG-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCG--A-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GA-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUUU G-AAC-UGGC A-GUCUA-GA GUG-----CG U-CAGGAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGGG AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--GA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAV- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GR-GGG -GG-GA---- ---------- 1681 -(GUG-AA)A ---------- ---------- ---------- -------UCC -CUUAG-UAA 1741 CG--AA---- ---S-(UAA- ---C)S-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CA-)---G-A UU-AAA-CUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUS--U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Strip2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stripa mine-derived. ACCESSION No information KEYWORDS No information. SOURCE Stripa mine-derived. ORGANISM Stripa mine-derived. REFERENCE 1 AUTHORS Ekendahl,S. and Pedersen,K. TITLE Carbon transformations by attached bacterial populations in granitic groundwater from deep crystalline bed-rock of the Stripa research mine JOURNAL Microbiology 140, 1565-1573 (1994) STANDARD No information REFERENCE 2 AUTHORS Ekendahl,S., Arlinger,J., Stahl,F. and Pedersen,K. TITLE Characterization of attached bacterial populations in deep granitic ground water from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy JOURNAL Microbiology 140, 1575-1583 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20810|g439463 biol_source= from Stripa research mine BASE COUNT 202 a 169 c 238 g 156 t 3611 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .........C CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGUU GCG-CAG-GC -G|-GA-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUUU G-AAC-UGGC A-GUCUA-GA GUG-----CG U-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--GA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GG-GA---- ---------- 1681 -(GUG-AA)A ---------- ---------- ---------- -------UCC -CUUAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGCUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CCAG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- G--------- ----AA---| UUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G..... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spr.voluta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirillum volutans. ACCESSION No information KEYWORDS No information. SOURCE Spirillum volutans. ORGANISM Spirillum volutans. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34131 BASE COUNT 391 a 327 c 448 g 299 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGNC-NGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -GC-AUAGG- A-A--UAC-A U-CCAU---U -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCANGG- GA--UC---- 601 --(------- ----CNA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUGG-- GCU---A-|G CCUAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-GG-GA 1021 --GG-AAA-- GA-A-AA-GC --AUU-GCU( C----UAACA -----U---) AGCA-AU-GU 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-CA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GC-UA- 1261 G-AU-AAG|C CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-UAU- 1321 -CGCG-CUUG G-AAC-UGUC U-AGCNA-GA GUU-----UG G-CN-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GNNG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCU--AA-AA CUGACG-CUC AU-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-UGG -GA-GG---- ---------- 1681 -(GUA-AA)- ---------- ---------- ---------- -------CCU -CUUAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AGAA-GUUGA C|U|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-N-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CU-UUG ACA-UG|--- ---------U ---CGAG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UNGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CNG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGU-GNG AUU-CA-UG. .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.4511 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 4511.. ACCESSION No information KEYWORDS No information. SOURCE clone 4511. ORGANISM clone 4511. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89318 BASE COUNT 60 a 48 c 70 g 41 t 4157 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... A|-GGC--U- CGA------- -----UC-AU 781 U-AA-C-UG| -G-UGU--(G -AGA)-GCAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--U-G GG(--UUAUG --)CC-CUGU AAA--CCAC| UGUC-AG-CA 1021 --GA-GAA-- GA-A-AA-GG --CUC----( -----UUAUG ---------) ---G-AG-CC 1081 ---------- -------C-G G-GA-CUGU- A-UCU-G-CA G-AG--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6 RHODOCYCLUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6 RHODOCYCLUS_GROUP. ORGANISM 2.14.2.6 RHODOCYCLUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.1 RCY.TENUIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.1 RCY.TENUIS_SUBGROUP. ORGANISM 2.14.2.6.1 RCY.TENUIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2090 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2090. str. SBR2090. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2090. str. SBR2090. ORGANISM str. SBR2090. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84620|g871741 isolate_name= SBR2090 BASE COUNT 95 a 91 c 136 g 70 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-NG-C NC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UAGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK107 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK107.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK107. ORGANISM clone SMK107. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78630|g509472 BASE COUNT 98 a 90 c 146 g 77 t 3965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUU---C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-UG --CUU-GGG( U----UAAUA -----C---) CCUG-AG-UA 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rcy.tenui2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocyclus tenuis str. 3760 DSM 110. ACCESSION No information KEYWORDS No information. SOURCE Rhodocyclus tenuis str. 3760 DSM 110. ORGANISM Rhodocyclus tenuis. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 110 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16209|g303830 isolate_name= 3760 BASE COUNT 366 a 338 c 471 g 283 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-CA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-UG --CUC-AGG( A----UAAUA -----C---) CCUG-AG-UA 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA C-GACUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -UG-GG---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------CCC -AUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----UCC 1981 -UGA-A--(- GAGA-)-UUC -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GN-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CACAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGC GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rcy.tenui3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocyclus tenuis str. SW18. ACCESSION No information KEYWORDS No information. SOURCE Rhodocyclus tenuis str. SW18. ORGANISM Rhodocyclus tenuis. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16210|g303833 isolate_name= SW18 BASE COUNT 362 a 339 c 471 g 284 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GN-GG (--GA----- ---------- ---------- 241 --------AA -)CC-NU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUAG--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-GG --MAC-UGG( C----UAAUA -----C---) CUGG-UG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA C-AGCUA-GA GUU-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -UG-GG---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------CCC -AUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -NAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UUA -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UC--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCGC-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rcy.tenuis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocyclus tenuis str. 2761 DSM 109 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodocyclus tenuis str. 2761 DSM 109 (T). ORGANISM Rhodocyclus tenuis. REFERENCE 1 AUTHORS Hiraishi,A. TITLE Phylogenetic affiliations of Rhodoferax fermentans and related species of phototrophic bacteria as determined by automated 16S rDNA sequencing JOURNAL Curr. Microbiol. 28, 25-29 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 109 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16208|g303829 DSM 109 (T) = SMG 109 = ATCC 19134 = ATCC 25093 isolate_name= 2761 BASE COUNT 363 a 340 c 471 g 284 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GN-GG (--GA----- ---------- ---------- 241 --------AA -)CC-NU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUAG--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-GG --CAC-UGG( C----UAAUA -----C---) CUGG-UG-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA C-AGCUA-GA GUU-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -UG-GG---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------CCC -AUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UUA -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UC--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCGC-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGG GUU-CG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rcy.purpur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodocyclus purpureus str. 6770 DSM 168. ACCESSION No information KEYWORDS No information. SOURCE Rhodocyclus purpureus str. 6770 DSM 168. ORGANISM Rhodocyclus purpureus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 168 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34132 isolate_name= 6770 BASE COUNT 367 a 345 c 470 g 289 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GN-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|AAC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CAU-G C-CCUG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUU---- 661 ----UGGG-- AGU---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-CG --GGU-UUC( C----UAAUA -----C---) GGAA-CC-CG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA C-AGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUC AU-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -UG-GG---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------CCC -AUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-G---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-N-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGG--- -AA----UCC 1981 -UGA-G--(- GAGA-)-CUC -G-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----NA---| CCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UC--CAUAG GGU-U-G-C- NA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CU-GCCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-UA-CC A-CGGC-AGC GUU-CG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1119 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1119. str. SBR1119. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1119. str. SBR1119. ORGANISM str. SBR1119. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84544|g871665 isolate_name= SBR1119 BASE COUNT 95 a 90 c 134 g 67 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGG-CU--N ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCGG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UNAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CUU---- 661 ----CCGG-- AGU---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G6.. ACCESSION No information KEYWORDS No information. SOURCE clone G6. ORGANISM clone G6. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91177|g984100 BASE COUNT 89 a 72 c 113 g 69 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 C-GU-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCG A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -AA-GG---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------CCU -UUUAG-UAC 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G3.. ACCESSION No information KEYWORDS No information. SOURCE clone G3. ORGANISM clone G3. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91174|g984097 BASE COUNT 90 a 76 c 113 g 67 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GC-UU- 1261 U-GC-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGA-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-GG---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------CCA -UUUAG-UAC 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G5.. ACCESSION No information KEYWORDS No information. SOURCE clone G5. ORGANISM clone G5. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91176|g984099 BASE COUNT 88 a 76 c 115 g 67 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 C-GU-AAG|A CAG---AGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UUUG U-GAC-UGCG A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-GG---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------CCA -UUUAG-UAC 1741 CG--UA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1025 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1025. str. SBR1025. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1025. str. SBR1025. ORGANISM str. SBR1025. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84469|g871590 isolate_name= SBR1025 BASE COUNT 96 a 87 c 132 g 74 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGN-A -UGC-CU--U ACNC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CUUU---C -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUG---- 661 ----AUUG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dcl.agitat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dechlorimonas agitatus str. CKB (T). ACCESSION No information KEYWORDS No information. SOURCE Dechlorimonas agitatus str. CKB (T). ORGANISM Dechlorimonas agitatus. REFERENCE 1 AUTHORS Achenbach,L.A., Coates,J.D. and Bruce,R.A. TITLE Dechlorimonas agitatus, gen. nov., sp. nov., a novel organism that couples growth to anaerobic chlorate reduction JOURNAL Unpublished (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF047462|g2906144 isolate_name= CKB (T) BASE COUNT 371 a 356 c 485 g 294 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-A C-CUUU---C -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUG---- 661 ----AUUG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CC 1021 --GG-GAA-- GA-A-AU-CG --CAU-CAG( C----UAAUA -----C---) CUGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-AGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-GG---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------CCA -CCUAG-UAC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CCAG--- -AA----GCC 1981 -CGG-A--(- GAGA-)-UUU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-GGG- UU-CC-GCCA -GAA-G-AUG 3121 G-AUG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGC-GGG GUU-CG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2058 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2058. str. SBR2058. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2058. str. SBR2058. ORGANISM str. SBR2058. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84592|g871713 isolate_name= SBR2058 BASE COUNT 98 a 84 c 133 g 76 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGN-G -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-A C-CUUU---C -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUG-(-- --------UG 541 AG-------- -)-CAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUG---- 661 ----AUUG-- AGC---G-|G CCGAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.2 AZOARCUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.2 AZOARCUS_SUBGROUP. ORGANISM 2.14.2.6.2 AZOARCUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.S5b2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus sp. str. S5b2. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus sp. str. S5b2. ORGANISM Azoarcus sp. REFERENCE 1 AUTHORS Hurek,T., Burggraf,S., Woese,C.R. and Reinhold-Hurek,B. TITLE rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs JOURNAL Appl. Environ. Microbiol. 59, 3816-3824 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15532 isolate_name= S5b2 BASE COUNT 354 a 334 c 476 g 295 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.NAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--U- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-NAA-AG) -C-UCACN-G A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CC 1021 --GG-GNA-- GA-A-AU-CG --UGC-AGG( GC---UGAUA -----C---) CCUG-UA-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA A-GACUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCNG-- ---------- ---------- ---------G 1501 GUC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-CU-- -------N|G -UU-GU-UGG -UA-GG---- ---------- 1681 -(GUN-AA)A ---------- ---------- ---------- -------CCN -NUUAG-UAA 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CCAG--- -AA----GCC 1981 -UUG-A--(- GAGA-)-UUG -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GN-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-CC-ACCA -GAA-G-UAG 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CU-UA-CC A-CGGU-GGN GUU-CA-UG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.sp6a3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus sp. str. 6a3. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus sp. str. 6a3. ORGANISM Azoarcus sp. REFERENCE 1 AUTHORS Hurek,T. and Reinhold-Hurek,B. TITLE Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences JOURNAL Appl. Environ. Microbiol. 61, 2257-2261 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85435|g928881 isolate_name= 6a3 BASE COUNT 110 a 109 c 149 g 89 t 3919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... ....UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--CUC---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CUG-C|C-AU -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAA-- GA-A-AU-GG --CAA-CGG( C----UAAUA -----U---) CCGU-UG-UU 1081 ---------- -------G-A U-GA-CGGU- A-CCC-G-CA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUA( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 C-NN-AAG|A CAG---ACGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUC U-GAC-UGCA G-GGCUA-GA GUA-----CG G-CA-G.... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.3 ENV.OS_G_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.3 ENV.OS_G_SUBGROUP. ORGANISM 2.14.2.6.3 ENV.OS_G_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JA22hi 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JA22hi.. ACCESSION No information KEYWORDS No information. SOURCE clone JA22hi. ORGANISM clone JA22hi. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69286|g1177257 BASE COUNT 80 a 77 c 119 g 66 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAS-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GC-CC- 1261 G-UU-AAG|A CAG---GUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCG-CUUG U-GAC-UGGC G-GGCUC-GA GUA-----CG G-UA-GAGGG GGG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -CC-GU-UUG -GU-GC---- ---------- 1681 -(GCG-AU)A ---------- ---------- ---------- -------GCG -CUGAG-UGG 1741 CG--AA---- ---S-(UAA- ---C)G-CG- UGAA-GUACC C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.OS_G 4376 bp RNA RNA 02-JUL-1998 DEFINITION Octopus Spring. ACCESSION No information KEYWORDS No information. SOURCE Octopus Spring. ORGANISM Octopus Spring. REFERENCE 1 AUTHORS Ward,D.M., Bateson,M.M., Weller,R. and Ruff-Roberts,A.L. TITLE Ribosomal RNA analysis of microorganisms as they occur in nature JOURNAL Adv. Microb. Ecol. 12, 219-286 (1992) STANDARD No information REFERENCE 2 AUTHORS Ward,D.M., Weller,R. and Bateson,M.M. TITLE 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community JOURNAL Nature 345, 63-65 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52550 library_source= Octopus Spring microbial mat DNA from Yellowstone NP NB: IDENT: general beta purple BASE COUNT 143 a 144 c 181 g 116 t 3792 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......A-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -CC-GU-UUG -GU-GCU--- ---------- 1681 -(GAU-AG)- ---------- ---------- -A-------- -------GUG -CUGAG-UGG 1741 CG---A---- --MK-(-AA- ---C)G-CG- UGAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACNGG-G -A-C-CC--G 1861 C-A--CA-AG C-GUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCC 1981 -UGG-A--(- GAGA-)-UCU -A-GGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ---------| CCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--AUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---AU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AG--C(G 2881 -C-A)AGCG- ---------- GA-GCCAA-U CCCAG-AAAG -CN-G-AUC- GUAGUCCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.4 ZOO.RAMIGERA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.4 ZOO.RAMIGERA_SUBGROUP. ORGANISM 2.14.2.6.4 ZOO.RAMIGERA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A46L 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91469 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 59 a 47 c 67 g 37 t 4166 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG. .......... .......... .......... .......... 1501 ..C--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGA..... 1741 .......... ..AC-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGNAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G8 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G8.. ACCESSION No information KEYWORDS No information. SOURCE clone G8. ORGANISM clone G8. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91180|g984103 BASE COUNT 89 a 77 c 113 g 67 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA U-CACUC-GA GUA-----CG G-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GCC--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGAG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Shin,Y., Hiraishi,A. and Sugiyama,J. TITLE Molecular systematics of the genus Zoogloea and emendation of the genus JOURNAL Int. J. Syst. Bacteriol. 43, 826-831 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14254 IAM 12136 = NCIMB 10706 (T) = ATCC 19544 BASE COUNT 366 a 338 c 466 g 289 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CGUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--UUA---- 661 ----UACG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CCG-C|C-AC -ACUGG-G-A 841 (CUCA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-AAA-- GA-A-AU-CG --CAU-CUU( U----UAAUA -----C---) AGGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA U-AACUA-GA GUA-----CG G-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GCC--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----CUU 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UNA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG CUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera str. 235 (N.C. Dondero) ATCC 19324. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera str. 235 (N.C. Dondero) ATCC 19324. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Shin,Y., Hiraishi,A. and Sugiyama,J. TITLE Molecular systematics of the genus Zoogloea and emendation of the genus JOURNAL Int. J. Syst. Bacteriol. 43, 826-831 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19324 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14257 isolate_name= 235 (N.C. Dondero) NB: ATCC lists this as Zoogloea sp. BASE COUNT 365 a 337 c 467 g 291 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CGUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--UUA---- 661 ----UACG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUCA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-AAA-- GA-A-AU-CG --CAU-CUU( U----UAAUA -----C---) AGGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA U-AACUA-GA GUA-----CG G-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GCC--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----CUU 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG CUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.ramig7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea ramigera. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea ramigera. ORGANISM Zoogloea ramigera. REFERENCE 1 AUTHORS Rossello-Mora,R., Ludwig,W. and Schleifer,K.H. TITLE Zoogloea ramigera: a phylogenetically diverse species JOURNAL FEMS Microbiol. Lett. 114, 129-134 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74913|g434336 ATCC 19544 = NCIMB 10706 (T) = IAM 12136 legacy_attribute= vs. Zoo.ramig1, ~4 base differences BASE COUNT 382 a 351 c 488 g 307 t 2848 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CGUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--UUA---- 661 ----UACG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-CAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-GU 1021 --GG-AAA-- GA-A-AU-CG --CAU-CUU( U----UAAUA -----C---) AGGG-UG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCA-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UA- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA U-AACUA-GA GUA-----CG G-CA-GAGGG AGG-U|GGAA 1381 UU-CCGCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GCC--AG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----CUU 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1037 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1037. str. SBR1037. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1037. str. SBR1037. ORGANISM str. SBR1037. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84480|g871601 isolate_name= SBR1037 BASE COUNT 96 a 89 c 137 g 71 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CGUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--UUA---- 661 ----UACG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zoo.DhA_35 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zoogloea sp. str. DhA-35. ACCESSION No information KEYWORDS No information. SOURCE Zoogloea sp. str. DhA-35. ORGANISM Zoogloea sp. REFERENCE 1 AUTHORS Mohn,W.W. JOURNAL Appl. Environ. Microbiol. 61(6) in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22536|g862658 (bases 1 to 458) isolate_name= DhA-35 BASE COUNT 200 a 202 c 279 g 170 t 3525 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CGUG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CUA---- 661 ----UAUG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....G-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCCC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-ANC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- GU-UU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -NCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG CUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G12.. ACCESSION No information KEYWORDS No information. SOURCE clone G12. ORGANISM clone G12. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91184|g984107 BASE COUNT 86 a 74 c 112 g 65 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAN-NDUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|A CAG---AGGU D-DDD-KN-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UUUG U-GAC-UGCA U-CGCUG-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UCG -GU-GA---- ---------- 1681 -(GGA-GA)C ---------- ---------- ---------- -------UCA -UUGAG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.5 SBR_ISOLATES_III. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.5 SBR_ISOLATES_III. ORGANISM 2.14.2.6.5 SBR_ISOLATES_III. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1001 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1001. str. SBR1001. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1001. str. SBR1001. ORGANISM str. SBR1001. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84449|g871570 isolate_name= SBR1001 BASE COUNT 89 a 97 c 145 g 61 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-N -UGC-UU--U ACUC-AUGCA A-GUC-GGGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-AUCGG- A-A--CGU-A C-CCUG---U -CGUG-G-GG 421 -GAU-AA-CG A--------- ------AU-- C(-GAAA-)G -AUUC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCGA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----GAGG-- AGC---G-|G CCGAU----- -GG|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2080 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2080. str. SBR2080. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2080. str. SBR2080. ORGANISM str. SBR2080. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84610|g871731 isolate_name= SBR2080 BASE COUNT 93 a 98 c 143 g 60 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GGGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-AUCGG- A-A--CGU-A C-CCUG---U -CGUG-G-GG 421 -GAU-AA-CG A--------- ------AU-- C(-GAAA-)G -AUUC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----GAGG-- AGC---G-|G CCGAU----- -GG|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1090 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1090. str. SBR1090. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1090. str. SBR1090. ORGANISM str. SBR1090. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84518|g871639 isolate_name= SBR1090 BASE COUNT 96 a 93 c 138 g 67 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UUA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1021 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1021. str. SBR1021. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1021. str. SBR1021. ORGANISM str. SBR1021. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84465|g871586 isolate_name= SBR1021 BASE COUNT 94 a 92 c 139 g 68 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUCGG- A-A--CGU-A C-CCUG---U -CGUG-G-GG 421 -GAU-AA-CA C--------- ------AG-- C(-GAAA-)G -CUGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UAGG-- AGC---G-|G CCGAU----- -AU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.6 SBR_ISOLATES_IV. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.6 SBR_ISOLATES_IV. ORGANISM 2.14.2.6.6 SBR_ISOLATES_IV. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1009 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1009. str. SBR1009. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1009. str. SBR1009. ORGANISM str. SBR1009. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84454|g871575 isolate_name= SBR1009 BASE COUNT 96 a 90 c 136 g 70 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUGCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGG)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-AUC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)NN-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1056 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1056. str. SBR1056. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1056. str. SBR1056. ORGANISM str. SBR1056. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84492|g871613 isolate_name= SBR1056 BASE COUNT 95 a 89 c 137 g 70 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACNC-AUGCA A-GUC-GAAC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-ACC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CA --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.7 THAUERA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.7 THAUERA_SUBGROUP. ORGANISM 2.14.2.6.7 THAUERA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AX39 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AX39.. ACCESSION No information KEYWORDS No information. SOURCE clone AX39. ORGANISM clone AX39. REFERENCE 1 AUTHORS Liesack,W. and Stackebrandt,E. TITLE Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. JOURNAL J. Bacteriol. 174, 5072-5078 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64373 BASE COUNT 325 a 314 c 435 g 258 t 3044 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GG-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CAUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -U-AC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-U A|-GGC-AA- GCA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAA--- NN-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CC 1021 --GG-GAA-- GA-A-AU-CG --UGU-UCU( C----UAACA -----U---) AGGA-CA-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-U-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-AGG-CC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GC---- ---------- 1681 -(AGC-AA)U ---------- ---------- ---------- -------GCA -CUGAG-UGA 1741 CG--CA---- ---C-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----CCU 1981 -UGC-U--(- GAGA-)-GG- -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tha.selnat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thauera selenatis str. Ax ATCC 55363 (T). ACCESSION No information KEYWORDS No information. SOURCE Thauera selenatis str. Ax ATCC 55363 (T). ORGANISM Thauera selenatis. REFERENCE 1 AUTHORS Macy,J.M., Rech,S., Auling,G., Dorsch,M., Stackebrandt,E. and Sly,L.I. TITLE Thauera selenatis gen. nov., sp. nov., a member of the beta subclass of Proteobacteria with a novel type of anaerobic respiration JOURNAL Int. J. Syst. Bacteriol. 43, 135-142 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 55363 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68491|g460997 isolate_name= Ax BASE COUNT 325 a 314 c 435 g 258 t 3044 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GG-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CAUG---U -NGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-U A|-GGC-AA- GCA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAN-- NN-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CC 1021 --GG-GAA-- GA-A-AU-CG --UGU-UCU( C----UAACA -----U---) AGGA-CA-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-U-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-AGG-CC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GC---- ---------- 1681 -(AGC-AA)U ---------- ---------- ---------- -------GCA -CUGAG-UGA 1741 CG--CA---- ---C-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----CCU 1981 -UGC-U--(- GAGA-)-GG- -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tha.aromat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thauera aromatica str. K172, clone K1 DSM 6984 (T). ACCESSION No information KEYWORDS No information. SOURCE Thauera aromatica str. K172, clone K1 DSM 6984 (T). ORGANISM Thauera aromatica. REFERENCE 1 AUTHORS Anders,H.-J., Kaetzke,A., Kampfer,P., Ludwig,W. and Fuchs,G . TITLE Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their descriptions as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria JOURNAL Int. J. Syst. Bacteriol. 45, 327-333 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6984 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77118|g509385 Former RDP Sids: Ps.spK172 isolate_name= K172, clone K1 NB: former name Pseudomonas sp. BASE COUNT 358 a 355 c 492 g 295 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G CCCAUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AU-- C(-GAAA-)G -GUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-CC 1021 --GG-GAA-- GA-A-AU-CG --UGG-UCU( C----UAACA -----U---) AGGC-CA-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCU-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GC---- ---------- 1681 -(AGC-AA)U ---------- ---------- ---------- -------GCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----CCU 1981 -UGC-U--(- GAGA-)-GGC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-UGUC-CU -AU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1022 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1022. str. SBR1022. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1022. str. SBR1022. ORGANISM str. SBR1022. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84466|g871587 isolate_name= SBR1022 BASE COUNT 88 a 94 c 142 g 69 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G CCCAUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -CUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1011 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1011. str. SBR1011. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1011. str. SBR1011. ORGANISM str. SBR1011. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84456|g871577 isolate_name= SBR1011 BASE COUNT 88 a 95 c 143 g 70 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G CCCAUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AU-- C(-GAAA-)G -GUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UUC--- 601 --(------- ---UUCG--- ---)------ ----GAA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.6.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.6.8 AZC.INDIGENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.6.8 AZC.INDIGENS_SUBGROUP. ORGANISM 2.14.2.6.8 AZC.INDIGENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus sp. ORGANISM Azoarcus sp. REFERENCE 1 AUTHORS Hurek,T. and Reinhold-Hurek,B. TITLE Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences JOURNAL Appl. Environ. Microbiol. 61, 2257-2261 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85434|g928882 BASE COUNT 112 a 105 c 151 g 89 t 3919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... ....UC---- 601 --(------- ---UUUA--- ---)------ -----GA--| -CCUCG--U- G--CGA---- 661 ----UUGG-- AGC---N-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-AC 1021 --GG-AAA-- GA-A-AU-CG --UAN-GGG( C----UAAUA -----C---) CCUA-UC-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 C-AU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-G.... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.indige 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus indigens str. VB32 (T). ACCESSION No information KEYWORDS No information. SOURCE Azoarcus indigens str. VB32 (T). ORGANISM Azoarcus indigens. REFERENCE 1 AUTHORS Hurek,T., Burggraf,S., Woese,C.R. and Reinhold-Hurek,B. TITLE rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs JOURNAL Appl. Environ. Microbiol. 59, 3816-3824 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15531 isolate_name= VB32 (T) BASE COUNT 353 a 344 c 475 g 293 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----NGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUNG--C- G--CGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-AC 1021 --GG-AAA-- GA-A-AU-CG --CUU-CGG( C----CAAUA -----C---) CCGA-AG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-CU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCG-CUUG U-GAC-UGGC A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUN-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GU-UCG -UA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCU -GUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|N|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----CCU 1981 -UGG-U--(- GAGA-)-GCC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- NA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus communis str. SWub3 (T). ACCESSION No information KEYWORDS No information. SOURCE Azoarcus communis str. SWub3 (T). ORGANISM Azoarcus communis. REFERENCE 1 AUTHORS Hurek,T. and Reinhold-Hurek,B. TITLE Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences JOURNAL Appl. Environ. Microbiol. 61, 2257-2261 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85432|g928866 isolate_name= SWub3 (T) BASE COUNT 110 a 101 c 154 g 90 t 3921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... ....UC---- 601 --(------- ---UNNG--- ---)------ -----GA--| -CCUAC--G- C--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUN-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UAA -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-G-C-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AA 1021 --GG-GAA-- GA-A-AA-CG --UGU-GGG( C----UAAUA -----U---) UCUG-CG-CG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-G.... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.commu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus communis str. KGP1. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus communis str. KGP1. ORGANISM Azoarcus communis. REFERENCE 1 AUTHORS Hurek,T. and Reinhold-Hurek,B. TITLE Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences JOURNAL Appl. Environ. Microbiol. 61, 2257-2261 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85433|g928865 isolate_name= KGP1 BASE COUNT 109 a 105 c 154 g 87 t 3921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... ....NN---- 601 --(------- ---NNCG--- ---)------ -----GA--| -CCUCA--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AA 1021 --GG-GAA-- GA-A-AA-CG --UGU-GGG( C----UAAUA -----U---) CCUG-CG-CG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-G.... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.BH72 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus sp. str. BH72. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus sp. str. BH72. ORGANISM Azoarcus sp. REFERENCE 1 AUTHORS Hurek,T., Burggraf,S., Woese,C.R. and Reinhold-Hurek,B. TITLE rRNA-targeted polymerase chain reaction and oligonucleotide hybridization to screen for Azoarcus spp., grass-associated diazotrophs JOURNAL Appl. Environ. Microbiol. 59, 3816-3824 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15530 isolate_name= BH72 BASE COUNT 354 a 342 c 468 g 292 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUN-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NNUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-AC 1021 --GG-AAA-- GA-A-AU-CG --CGC-GGG( C----UAAUA -----U---) CCCG-CG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CCG-U-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA A-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUN-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-CU-- -------N|G -UU-GU-UCG -UA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCU -GUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UNAA-GUUGA C|C|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----CCU 1981 -UGG-U--(- GAGA-)-GCC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-N-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-NAG AUU-CA-NG- ANN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.toluly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus tolulyticus str. Tol-4. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus tolulyticus str. Tol-4. ORGANISM Azoarcus tolulyticus. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33694|g497429 Former RDP Sids: Azc.denit9 isolate_name= Tol-4 NB: former name Azoarcus denitrificians BASE COUNT 352 a 349 c 475 g 282 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UC----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AU-CG --GGU-GGG( U----CAAUA -----C---) CCUG-CC-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-2. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-2. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33691|g497426 isolate_name= Td-2 BASE COUNT 351 a 351 c 467 g 282 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-S--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AU-CG --GGU-GGG( U----CAAUA -----C---) CCUG-CC-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -USCG-CUUG U-GAC-UCCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 SC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--S 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGN-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-1. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-1. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33687|g497422 isolate_name= Td-1 BASE COUNT 351 a 348 c 475 g 283 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AU-CG --GGU-GGG( U----CAAUA -----C---) CCUG-CC-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 KG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UGG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-17. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-17. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33689|g497424 isolate_name= Td-17 BASE COUNT 353 a 348 c 476 g 280 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CCC-CUU( C----UAAUA -----C---) AGGG-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( NCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CAGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUG----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-15. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-15. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33688|g497423 isolate_name= Td-15 BASE COUNT 352 a 349 c 472 g 281 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|C CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G--ACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CCC-CUC( C----UAAUA -----C---) GGGG-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A NCUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--N 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGS-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-21. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-21. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33692|g497427 isolate_name= Td-21 BASE COUNT 349 a 348 c 475 g 281 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-GUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-G--(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CCU-CCC( C----UAGUA -----C---) GGGA-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A UCUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- -GCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACG-UG|--- ---------C ---CAGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGN-C AU-CA----- ---------- ---------- ---U(---UN ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.sp_pF6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus sp. str. pF6. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus sp. str. pF6. ORGANISM Azoarcus sp. REFERENCE 1 AUTHORS Rhee,S., Lee,G., Yoon,J., Park,Y., Bae,H. and Lee,S. TITLE Anaerobic and aerobic degradation of pyridine by a newly isolated denitrifying bacterium JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44853|g1174246 isolate_name= pF6 BASE COUNT 362 a 354 c 486 g 288 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CUU-CCC( C----UAAUA -----C---) GGGA-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-G-G AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.evansi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus evansii str. KB740 DSM 6898. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus evansii str. KB740 DSM 6898. ORGANISM Azoarcus evansii. REFERENCE 1 AUTHORS Anders,H.-J., Kaetzke,A., Kampfer,P., Ludwig,W. and Fuchs,G . TITLE Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their descriptions as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria JOURNAL Int. J. Syst. Bacteriol. 45, 327-333 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6898 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77679|g509386 Former RDP Sids: Ps.spKB740 isolate_name= KB740 NB: former name Pseudomonas sp. BASE COUNT 368 a 363 c 494 g 301 t 2850 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U--UC|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CUU-CCC( C----UAAUA -----C---) GGGA-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUA|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-19. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-19. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33690|g497425 isolate_name= Td-19 BASE COUNT 352 a 348 c 467 g 284 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCS-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UGC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-CCC-UGA UCCA|-GCCA USCC-GC-GU 961 G-A-GU-G-A A-GAA--G-S CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CUU-CCC( C----UAAUA -----C---) GGGA-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGNCU-A UCUAC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|C-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--C 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-N C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGGG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGV-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azc.denit8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azoarcus denitrificians str. Td-3. ACCESSION No information KEYWORDS No information. SOURCE Azoarcus denitrificians str. Td-3. ORGANISM Azoarcus denitrificians. REFERENCE 1 AUTHORS Fries,M.R., Zhou,J., Chee-Sanford,J. and Tiedje,J.M. TITLE Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats JOURNAL Appl. Environ. Microbiol. 60, 2802-2810 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33693|g497428 isolate_name= Td-3 BASE COUNT 356 a 347 c 470 g 283 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G C-CCAG---U -CAUG-G-GG 421 -GAU-AA-CU A--------- ------CG-- C(-GAAA-)G -CGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---ACAA--- ---)------ -----GA--| -CCUCG--C- G--UGA---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-AC 1021 --GG-AAA-- GA-A-AA-CG --CUU-CCC( C----UAAUA -----C---) GGGA-GG-UG 1081 ---------- -------G-A U-GA-CGGU- A-CUG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UG- 1261 U-GU-AAG|A CAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-CUUG U-GAC-UGCA C-GGCUA-GA GUA-----CG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAC- CCCCCCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UC-GU-UCG -GA-GA---- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- -------UCA -CUGAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--C 1861 C-A--CA-AG CGGUGG-AUG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---CUGG--- -AA----UCC 1981 -UUG-A--(- GAGA-)-UCA -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AA--UUGV-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GG--A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUC--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCUU-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.7 GALLIONELLA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.7 GALLIONELLA_ASSEMBLAGE. ORGANISM 2.14.2.7 GALLIONELLA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD17 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26204|g498404 library_source= unidentified soil bacterium from paddy field BASE COUNT 68 a 64 c 84 g 60 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAG -GC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUG- (CGCAAC-U- A)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gal.ferrug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gallionella ferruginea str. (stock Johan). ACCESSION No information KEYWORDS No information. SOURCE Gallionella ferruginea str. (stock Johan). ORGANISM Gallionella ferruginea. REFERENCE 1 AUTHORS Hallbeck,L., Stahl,F. and Pedersen,K. TITLE Phylogeny and phenotypic characterization of the stalk- forming and iron-oxidizing bacterium Gallionella ferruginea JOURNAL J. Gen. Microbiol. 139, 1531-1535 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L07897 isolate_name= (stock Johan) BASE COUNT 363 a 293 c 408 g 288 t 3024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-- --G---U--U ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CAU-A U-CCGG---A -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCU--C- G--CUU---- 661 ----UCGG-- AGU---G-|G CCGAU----- -AC|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAA-- GA-A-AU-UG --CAC-UUC( U----UAAUA -----C---) GAAG-UG-UA 1081 ---------- -------G-A U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA A-GACUA-GA GUA-----UA G-CA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 GUU--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GG-AAG--- ---------- 1681 -(-GA-GA)- ---------- ---------- -C-------- -------UUU -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG C-GUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---CAGA--- -AA----GAU 1981 -UGC-A--(- GAGA-)-UGU -G-AUUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA--U| UCU-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G34 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91286|g987034 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 87 a 73 c 114 g 66 t 4036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA--CGU- GCG-CAG-GC -G|-GU-CU- 1261 CNNNNAAG|- CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UAGG A-GGCUG-GA GUG-----UA G-CA-UGAGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCA-- -CCCCCUG-- ---------- ---------- ---------G 1501 GCU--GA-CA CUGACG-NUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -UU-GU-CGG -GG-GA---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------UUU -CUCGG-UAA 1741 CG--AC---- --AC-(KAA- ---C)GACG- UGAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8 NITROSOMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8 NITROSOMONAS_GROUP. ORGANISM 2.14.2.8 NITROSOMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8.1 NITROSOSPIRA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8.1 NITROSOSPIRA_SUBGROUP. ORGANISM 2.14.2.8.1 NITROSOSPIRA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A40t 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A40t.. ACCESSION No information KEYWORDS No information. SOURCE clone A40t. ORGANISM clone A40t. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91463|g987768 BASE COUNT 88 a 62 c 100 g 67 t 4059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGN|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-AGGC A-AGCUA-GA G......... .......GGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUC--AA-GA UUGANN-NUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GU-C----- ---------- 1681 -(UUA-AU)U ---------- ---------- ---------- --------GA -CUUGG-UAA 1741 CG--CA---- --S--(UAA- ---C)G-CG. .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.briens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira briensis str. C-128. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira briensis str. C-128. ORGANISM Nitrosospira briensis. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96396 Former RDP Sids: Nsp.briens isolate_name= C-128 BASE COUNT 367 a 343 c 447 g 289 t 2930 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-N 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-CGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GN-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---C-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-CU-CCA -UUAAUU-GC -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GUC 1981 -CGC-U--(- GAGA-)-GGU -G-GAUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-CC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG---C G-CC-UG-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.brien2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira briensis str. C-128. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira briensis str. C-128. ORGANISM Nitrosospira briensis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35505|g530899 Former RDP Sids: Nsp.brien2 isolate_name= C-128 BASE COUNT 369 a 338 c 461 g 287 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GUC 1981 -CGC-U--(- GAGA-)-GGU -G-GAUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-CC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CC-KK-NC A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.tenui2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira tenuis str. Nv12. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira tenuis str. Nv12. ORGANISM Nitrosospira tenuis. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96405 Former RDP Sids: Nsv.tenui2 isolate_name= Nv12 NB: former name Nitrosovibrio tenuis BASE COUNT 363 a 332 c 449 g 286 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-N 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A W|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CUGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAG-UACA A-GGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-U-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GN-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 GC--GA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-C--(- GAGA-)-GGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GUUU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-NAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.tenui3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira tenuis str. C-141. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira tenuis str. C-141. ORGANISM Nitrosospira tenuis. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96397 Former RDP Sids: Nsv.tenui3 isolate_name= C-141 NB: former name Nitrosovibrio tenuis BASE COUNT 360 a 329 c 452 g 286 t 2949 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-GGU|-N 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUC---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-NC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-C CU(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-U--(- GAGA-)-GGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUY-ACN--- --CCA-UGGG A--GU-GGG- UU-UN-NCCA -GAA-N-NAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.tenuis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira tenuis str. Nv1. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira tenuis str. Nv1. ORGANISM Nitrosospira tenuis. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96404 Former RDP Sids: Nsv.tenuis isolate_name= Nv1 NB: former name Nitrosovibrio tenuis BASE COUNT 349 a 324 c 433 g 269 t 3001 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-N 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUC---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-NN -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( C----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-CUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-U--(- GAGA-)-GGU -G-GGCG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spL115 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. L115. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. L115. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84662 isolate_name= L115 BASE COUNT 356 a 326 c 446 g 271 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G U-CUUC---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G---UC---- 661 ----UUUG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( C----UAAUA -----C---) CUGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---GCCG--- -AA----GCC 1981 -CGC-U--(- GAGA-)-GGU -G-GGCG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CGG-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spAF 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. AF. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. AF. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84658 isolate_name= AF BASE COUNT 346 a 317 c 434 g 267 t 3012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CUUC---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUC---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( C----UAAUA -----C---) CUGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---GCCG--- -AA----GCC 1981 -CGC-U--(- GAGA-)-GGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CGG-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCN-NGG-UC UUGUA----C 3061 ACNCCGCCC- GUC-ACA--- --CNA-UGGG A--GU-GGG- UU-UC-A... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.multi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira multiformis. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira multiformis. ORGANISM Nitrosospira multiformis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35508|g530901 Former RDP Sids: Nlb.multi4 NB: former name Nitrosolobus multiformis BASE COUNT 73 a 60 c 93 g 62 t 4088 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU..(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.multi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. C-71 ATCC 25196. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. C-71 ATCC 25196. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25196 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96401 Former RDP Sids: Nlb.multi2 isolate_name= C-71 isolate_name= AHB1 NB: former name Nitrosolobus multiformis BASE COUNT 336 a 301 c 411 g 256 t 3072 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-CAAA-)G -GUGU-G--C NAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------CG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACS)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 N-A-GU-G-A A-GAA--G-G C.(....... ..)....... .....GCUC| UUUC-AG-YC 1021 --NN-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCCGC CGUGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-NNNU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG NNG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-N UU-AAAACUC -AAA-GGAAN NN-ACGNN-N -N-N-NC--G 1861 C-A--CA-AG CNGUGG-AUN A-U-GU-GGA -UUANNU-CG -(ANNNNN-N G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---GCCG--- -GA----GCC 1981 -CGC-C--(- GAGA-)-GGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-CA-ACA |---C|A--G 2161 GU-GC-UGCA NG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUNA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GN-GGA-(UC -AGC-AU)-G .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.multif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira multiformis.. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira multiformis. ORGANISM Nitrosospira multiformis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Former RDP Sids: Nlb.multif NB: former name Nitrosolobus multiformis BASE COUNT 378 a 344 c 465 g 293 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------CG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-N-NAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GANGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---GCCG--- -GA----GCC 1981 -CGC-C--(- GAGA-)-GGU -G-GGNG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-N-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-CC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CC-UG-CC A-CGGU-GAG AUU-CA-UG. .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.multi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. C-71 ATCC 25196. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. C-71 ATCC 25196. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25196 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35509|g530900 Former RDP Sids: Nlb.multi3 isolate_name= C-71 isolate_name= AHB1 NB: former name Nitrosolobus multiformis BASE COUNT 371 a 344 c 470 g 290 t 2901 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------CG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- ANCA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---GCCG--- -GA----GCC 1981 -CGC-C--(- GAGA-)-GGU -G-GNUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-CC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CC-UG-CN A-CGGU-GAG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. C-71 ATCC 25196. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. C-71 ATCC 25196. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Rotthauwe,J., Kowalchuk,G.A., de Boer,W. and Liesack,W. TITLE Comparative analysis of gene sequences encoding for ammonia monooxygenase of Nitrosospira sp. AHB1 and Nitrosolobus multiformis C-71 JOURNAL FEMS Microbiol. Lett. 133, 131-135 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25196 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90820|g1085097 (bases 28 to 1445) isolate_name= C-71 isolate_name= AHB1 BASE COUNT 362 a 329 c 448 g 279 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----A---) CUGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GC-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-C--(- GAGA-)-AGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spT7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. T7. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. T7. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84661 isolate_name= T7 BASE COUNT 361 a 325 c 445 g 278 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----A---) CUGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-C--(- GAGA-)-AGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spB6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. B6. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. B6. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84657 isolate_name= B6 BASE COUNT 360 a 322 c 438 g 277 t 2979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AC-GG --UCA-CGG( U----UAAUA -----A---) CUGU-GA-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-C--(- GAGA-)-AGU -G-GGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spD11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. D11. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. D11. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84660 isolate_name= D11 BASE COUNT 366 a 321 c 438 g 278 t 2973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAA-- GA-A-AU-GG --UUA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GGC 1981 ---C-C--(- GAGA-)-GGC -G-GAUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.spGM4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. GM4. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. GM4. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84659 isolate_name= GM4 BASE COUNT 355 a 314 c 437 g 278 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAAUGG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AA-GG --UUA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCU 1981 -UGC-C--(- GAGA-)-GGU -G-AGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nss.sp40KI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosospira sp. str. 40KI. ACCESSION No information KEYWORDS No information. SOURCE Nitrosospira sp. str. 40KI. ORGANISM Nitrosospira sp. REFERENCE 1 AUTHORS Utaaker,J.B., Bakken,L., Jiang,Q.Q. and Nes,I.F. TITLE Phylogenetic analysis of seven new isolates of the highly related ammonia-oxidizing bacteria based on 16S rRNA gene sequencing JOURNAL Syst. Appl. Microbiol. 18, 549-559 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84656 isolate_name= 40KI BASE COUNT 352 a 312 c 425 g 272 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-CC 1021 --GG-AAC-- GA-A-AA-GG --UUA-CGG( U----UAAUA -----C---) CCGU-GA-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGA -CUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------U ---ACCG--- -AA----GCC 1981 -CGC-C--(- GAGA-)-GGU -G-AGUG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CGG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-A A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM3.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM3. ORGANISM clone AEM3. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09544|g495185 BASE COUNT 96 a 69 c 102 g 70 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGUU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GA --UUG-CAG( A----UAAUA -----C---) CUGC-AA-UU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-A-AA U-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8.2 NMN.COMMUNIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8.2 NMN.COMMUNIS_SUBGROUP. ORGANISM 2.14.2.8.2 NMN.COMMUNIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.spNm58 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas sp. str. Nm58. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas sp. str. Nm58. ORGANISM Nitrosomonas sp. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46930|g975695 isolate_name= Nm58 NB: bases 188-237 repeat of bases 139-187 of GB entry; removed BASE COUNT 65 a 51 c 64 g 45 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... GAGU---AAU -AC-AUCGG- A-A--CGU-A U-CUUG---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------CA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-NG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CNA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAN-C|C-AC -ACUGG-N-A 841 (CUGA-GA-C ACN)--NCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas communis str. Nm2. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas communis str. Nm2. ORGANISM Nitrosomonas communis. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46981|g1592803 isolate_name= Nm2 BASE COUNT 337 a 258 c 369 g 260 t 3152 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUUA---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-ACN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GG-UC 1021 --GG-GAA-- GA-A-AU-AG --UUA-UGG( N----UAAUA -----U---) CCAU-AA-UG 1081 ---------- -------A-A U-GA-CGGN- A-CCS-A-CA U-AA--GAAG ---------C 1141 -ACCSGCU-A ACUAC-GUG( CCA--GCAGS CSCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GA-UY- 1261 U-AU-UAG|U CAR---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCC -GG-G-AAU- 1321 -UGNG-UUUG R-AAC-UWUW U-KACUW-GA GUG-----UG A-UA-GAGGG GAG-U|NGAA 1381 UU-CCAUGU- GUN-GNA(-G KGAAA)-UGC -GU-NGAG-A UG-UNGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 AUU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- -------AGA -UUUGG-UAA 1741 CG--UA---- --SS-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCNA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UGCA--- -AA----UUC 1981 -CAC-A--(- GAGA-)-UGU -G-GAAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| UCG-AG-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- --UU(---CA ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UA....... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.spNm33 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas sp. str. Nm33. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas sp. str. Nm33. ORGANISM Nitrosomonas sp. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46982|g1592804 isolate_name= Nm33 BASE COUNT 93 a 70 c 108 g 68 t 4037 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUUA---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-ACN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC...... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.spNm41 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas sp. str. Nm41. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas sp. str. Nm41. ORGANISM Nitrosomonas sp. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46983|g1592805 Former RDP Sids: Nmn.commu2 isolate_name= Nm41 BASE COUNT 80 a 63 c 93 g 62 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GNGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUUN---A -AGUG-G-GG 421 -GAU-AA-CG N--------- ------AU-- C(-GAAA-)G -AUGU-G--C UANUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---C...(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----UUAG-- AGC---G-|G CCGAU----- -NC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-ACN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC...... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.nitros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas nitrosa str. Nm90. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas nitrosa str. Nm90. ORGANISM Nitrosomonas nitrosa. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46986|g1592808 isolate_name= Nm90 BASE COUNT 70 a 59 c 83 g 52 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CUNN---N -NGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---C...(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUU---- 661 ----UUAG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-ACN-UGA UCCA|-GCCA UGCC-GC-GU 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8.3 ENV.AEM5_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8.3 ENV.AEM5_SUBGROUP. ORGANISM 2.14.2.8.3 ENV.AEM5_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM5.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM5. ORGANISM clone AEM5. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09546|g495187 BASE COUNT 94 a 72 c 106 g 65 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- A--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GG --UUG-CGA( C----UAAUA -----A---) UCGC-GA-UC 1081 ---------- -------A-A U-GA-CGGU- A-CCG-A-AA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM6.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM6. ORGANISM clone AEM6. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09547|g495188 BASE COUNT 94 a 72 c 106 g 65 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- A--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GG --UUG-CGA( C----UAAUA -----A---) UCGC-GA-UC 1081 ---------- -------A-A U-GA-CGGU- A-CCG-A-AA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM4.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM4. ORGANISM clone AEM4. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09545|g495186 BASE COUNT 95 a 72 c 104 g 66 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- A--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-C-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GA --UUG-CGA( C----UAAUA -----A---) UCGU-GA-UC 1081 ---------- -------A-A U-GA-CGGU- A-CCG-A-AA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8.4 NMN.EUROPAEA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8.4 NMN.EUROPAEA_SUBGROUP. ORGANISM 2.14.2.8.4 NMN.EUROPAEA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.oltrph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas oligotropha.. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas oligotropha. ORGANISM Nitrosomonas oligotropha. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46926|g975694 BASE COUNT 53 a 43 c 70 g 43 t 4167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....U----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-NCN-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CN(--NN-CG --)GG-UUGU AAA--GCUC| UUUU-AG-UC 1021 --GG-AAA-- G......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.europa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas europaea.. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas europaea. ORGANISM Nitrosomonas europaea. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 395 a 317 c 453 g 306 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)NC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------NG- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -AAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-A-U---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GN-UA-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UN| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAA-C|C-AC -ACUGG-G-A 841 (UCGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-AG-UC 1021 --GG-AAA-- GA-A-AG-AG --UUG-CAA( U----GAAUA -----A---) UUGU-GA-UU 1081 ---------- -------U-A U-GA-CGGU- A-CCG-A-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUN-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUA-GA GUG-----CA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GUU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------GGA -UUUGG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|N|G-CCU- G-GGGNGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ANGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UCU 1981 -AAU-G--(- GAGA-)-CAU -A-AGAG--- UA-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UNN-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AA--UUGC-U AU-CAUU--- ---------- ---------- ----(---UU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----AAUG|A 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-UG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAG -CA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-GGU- UU-UC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GGG GGU-CA-UG- ACN-NGG... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.europ2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas europaea str. C-31 (T). ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas europaea str. C-31 (T). ORGANISM Nitrosomonas europaea. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96399 isolate_name= C-31 (T); Nm50 BASE COUNT 358 a 289 c 410 g 275 t 3044 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -AAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--N NAAUACC-GC 481 AU-A-U---- ---------- ---------- ---------- ---CUC-(-- --------UN 541 NG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GNN N)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CN(--NN-CG --)GG-UUGU AAA--GCUC| UUUU-AG-UC 1021 --GG-AAA-- GA-A-AG-AG --UUG-CAA( U----GAAUA -----A---) UUGU-GA-KU 1081 ---------- -------U-A U-GA-CGGU- A-CCG-A-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUNN-GUG( CCA--GCAGC CGNNGNN-N) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNNA UC-GGAAUUA -CU-NGGC|G UNAA-GCGU- GCG-CAG-GC -G|-GU-NU- 1261 N-GY-AAG|U CAG---AUGU G-AAA-KC-C CC-GGG-C(- UY-A)A-CCU -GG-G-AAY- 1321 -UGCR-UUYR A-AAC-UACA A-GGCUA-GA GUG-----CA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GUU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------GGA -UUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UCU 1981 -AAU-G--(- GAGA-)-CAU -A-AGAG--- UA-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAR-C--GC AACCC-UU-G |-UN--ACU- 2281 AA--UUGC-N AU-CAUU--- ---------- ---------- ----(---UU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----AAUG|A 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU NAU-N-GC-C CUNAU-G-GG -UN--GGGC- 2821 U-WCA-CA-C GUN--AUACA AUGGC-G-UG -UA--CAGAN GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAG -CA-C-GUC- GUNGUCCGGA 2941 U-CGGAGUN- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NNN-NS UUGUA----S 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.eutrop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas eutropha str. C-91. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas eutropha str. C-91. ORGANISM Nitrosomonas eutropha. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96402 isolate_name= C-91; Nm57 BASE COUNT 365 a 290 c 402 g 277 t 3042 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -AAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGN-N--N NAAUACC-GC 481 AU-A-U---- ---------- ---------- ---------- ---CUC-(-- --------UC 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CUGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUU-AG-UC 1021 --GG-AAA-- GA-A-AG-AG --UCA-UAG( U----AAAUA -----G---) CUAU-GA-UU 1081 ---------- -------U-A U-GA-CGGU- A-CCG-A-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUA-GA GUG-----CA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GUU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-U-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------GGA -UUUGG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAN NN-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CNGUGG-AUU A-N-NU-GNA -UUANNU-CG -(ANGCAA-C G)--NGAAAA 1921 A-NCUUA-CC U.C-CC-UUN ANA-UG|--- ---------C ---UUGG--- -AA----UCU 1981 -AAU-G--(- -AGA-)-CAU -A-ANNG--- UN-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-U AU-CAUU--- ---------- ---------- ----(---UU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----AAUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCCAA-U CUCAG-AAAG -CN-N-NUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UNAAGU-CG -GAAU-CGC- -UAGUN-NUC 3001 GC-GGA-(UC -AGC-AU)-G CCN-NNNUG- AAUAC-GUU- CCC-NNN-NN N......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.eutro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas eutropha.. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas eutropha. ORGANISM Nitrosomonas eutropha. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46928|g975693 BASE COUNT 61 a 41 c 61 g 41 t 4172 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .........U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -NAU-AA-CG C--------- ------AU-- C(-GAAA-)N -ANGN-N--C UAAUACC-GC 481 AU-ANU---- ---------- ---------- ---------- ---CUC-(-- --------UC 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CUGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAA-C|C-AC -ACUGG-G-A 841 (CU....... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.europ3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas europaea. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas europaea. ORGANISM Nitrosomonas europaea. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46927|g975692 BASE COUNT 78 a 76 c 116 g 65 t 4041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -AAU...... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... ......GGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GNN N)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GN-UUGU AAA--GCUC| UUUC...... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.haloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas halophila str. Nm1. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas halophila str. Nm1. ORGANISM Nitrosomonas halophila. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46987|g1592809 isolate_name= Nm1 BASE COUNT 331 a 268 c 372 g 246 t 3159 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUU---A -AGUG-G-GG 421 -AAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGN-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-AAA-- GA-A-AN-NN --UUG-NGA( U----UAAUA -----C---) UCAN-AA-UU 1081 ---------- -------A-A U-GA-CGGN- A-CCS-A-CA G-AA--GAAG ---------C 1141 -ACCSGCU-W ACUWC-GUG( CCA--GCAGS CSCGGUA-A) U-W-C-GKWG |-GGUG-C-- 1201 GAN-CGUUAA UC-SGAAUUA -CU-NGGC|G UWAA-GGGU- GCG-CAG-GC -G|-GG-CU- 1261 U-GU-WAG|U CAR---AUGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -GGCG-UUUG A-NNC-UACA A-GGCUA-GA GUG-----CA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCNCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------GGA -UUUGG-UAA 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UCC 1981 -UGU-G--(- GAGA-)-CAU -R-RGAG--- UN-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACU- 2281 AA--UUGC-U AU-CAUU--- ---------- ---------- ----(---CA ---N----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----NUUG|A 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-UG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAG -CA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UA....... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.halop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas halophila str. Nm1. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas halophila str. Nm1. ORGANISM Nitrosomonas halophila. REFERENCE 1 AUTHORS Pommerening-Roeser,A. and Koops,H. TITLE Diversity of phylogenetic relationships among the lithotrophic ammonia-oxidizing bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46989|g1124977 (bases 1 to 153) isolate_name= Nm1 BASE COUNT 99 a 92 c 117 g 74 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......UGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -GGCG-UUUG A-NNC-UACA A-GGCUA-GA GUG-----CA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCNCGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAAG- AACA-CCGA- 1441 -U-G-GC(-N AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCU--GA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-N-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(A..-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-UG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAG -CA-C-GUC- GNAGUCCGGA 2941 N-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAANU-CG -GANU-CGC- -UAGU..... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsc.mobili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosococcus mobilis str. Nc2. ACCESSION No information KEYWORDS No information. SOURCE Nitrosococcus mobilis str. Nc2. ORGANISM Nitrosococcus mobilis. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96403 isolate_name= Nc2 BASE COUNT 350 a 287 c 408 g 276 t 3055 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..G|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG N--------- ------NN-- N(-NAAA-)G -AUGU-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAA-C|C-NN -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UU 1021 --GG-GAA-- GA-A-AC-GA --UUG-CAA( C----UAAUA -----A---) UUGU-AA-UU 1081 ---------- -------A-A U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCG-UUUG A-AAC-UGCA A-GGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-CGG -GU-CU---- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- -------GGG -CUUGG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UUU 1981 -UAC-G--(- GAGA-)-CAU -A-AAAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AA---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AA--UUGC-B AU-CA----- ---------- ---------- ---U(---UU ---AUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGA-G-UG -UA--CAGAG GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAC-AAAG -CA-C-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGU- UU-U...... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.8.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.8.5 NMN.MARINA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.8.5 NMN.MARINA_SUBGROUP. ORGANISM 2.14.2.8.5 NMN.MARINA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.aestua 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas aestuarii str. Nm36. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas aestuarii str. Nm36. ORGANISM Nitrosomonas aestuarii. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46985|g1592807 Former RDP Sids: Nmn.cryto2 isolate_name= Nm36 BASE COUNT 88 a 70 c 111 g 65 t 4042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAN -NC-AUCGG- A-A--CGU-G U-CCAA---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GNAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGN---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-ACN-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUU....... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas marina str. Nm22. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas marina str. Nm22. ORGANISM Nitrosomonas marina. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46990|g1592810 isolate_name= Nm22 BASE COUNT 329 a 260 c 369 g 259 t 3159 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G U-CCAA---G -ANUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-NUU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----UUGG-- AGU---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GNA A)-ACN-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-NC 1021 --GA-NAA-- GA-A-AA-GA --UUG-UNN( U----GAAUA -----A---) UCAC-AA-CU 1081 ---------- -------C-A U-GA-CGUU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUA-GA GUG-----UA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAAG- AACA-UCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GC-CU---- ---------- 1681 -(NNU-AC)U ---------- ---------- ---------- -------AGG -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AUU N-U-GU-GGA -UUAAUU-CG -(AUNCNA-C G)--NGANAA 1921 A-CCUUA-CC UAC-CC-UUG ANA-UG|--- ---------U ---AGCG--- -AA----UUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUAG--- UG-------- --CCN----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GGG------- ----AA---| CGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- --UU(---NA ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-C. .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas marina str. C-56. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas marina str. C-56. ORGANISM Nitrosomonas marina. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96400 isolate_name= C-56; Nm63 BASE COUNT 355 a 293 c 414 g 286 t 3028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C ACG------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GU-|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUCGG- A-A--CGU-G U-CCAU---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------CG 541 AG-------- -)-GAG---- ---------- ----AAAU-- ---GCAGGG- GA--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUUG--C- G--CUU---- 661 ----CUGG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(GACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GA-GAA-- GA-A-AA-GA --UUG-UGA( U----GAAUA -----A---) UCAC-AA-UU 1081 ---------- -------C-A U-GA-CGGU- A-UCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCRGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUA-GA GUG-----UA A-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAAG- AACA-UCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GC-CU---- ---------- 1681 -(-UA-CU)- ---------- ---------- ---------- -------AGG -CUUAG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAG-GG-UUG ACA-UG|--- ---------U ---AGCG--- -AA----UUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGG- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.marin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas marina str. Nm22. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas marina str. Nm22. ORGANISM Nitrosomonas marina. REFERENCE 1 AUTHORS Pommerening-Roeser,A. and Koops,H. TITLE Diversity of phylogenetic relationships among the lithotrophic ammonia-oxidizing bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46992|g1124980 (bases 1 to 287) isolate_name= Nm22 BASE COUNT 152 a 132 c 187 g 135 t 3770 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ....C-GUAN |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUA-GA GUG-----UA G-CA-GAGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAAG- AACA-UCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -GC-CU---- ---------- 1681 -(-UA-CU)- ---------- ---------- ---------- -------AGG -CUUAG-UAA 1741 C......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .U-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-C. .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM1.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM1. ORGANISM clone AEM1. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09542|g495183 BASE COUNT 91 a 70 c 106 g 70 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GG --UUG-UGA( C----UAAUA -----A---) UUGC-AA-UU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-A-CA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AEM2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AEM2.. ACCESSION No information KEYWORDS No information. SOURCE clone AEM2. ORGANISM clone AEM2. REFERENCE 1 AUTHORS McCaig,A., Embley,T.M. and Prosser,J. TITLE Molecular analysis of enrichment cultures of marine ammonia oxidisers JOURNAL FEMS Microbiol. Lett. in press (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09543|g495184 BASE COUNT 91 a 70 c 106 g 70 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GG-GAA-- GA-A-AA-GG --UUG-UGA( C----UAAUA -----A---) UUGC-AA-UU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-A-CA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.crytol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas cryotolerans str. Nm55. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas cryotolerans str. Nm55. ORGANISM Nitrosomonas cryotolerans. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46984|g1592806 isolate_name= Nm55 BASE COUNT 326 a 261 c 374 g 253 t 3162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -ANGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUUG--U- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-NCN-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UC 1021 --GA-GAA-- GA-A-AA-GG --UUG-NGA( N----UAAUW -----A---) UUSN-AA-CU 1081 ---------- -------W-A U-GA-CGGU- A-UYG-A-CA N-AA--GAAG ---------C 1141 -ACCSGCU-U ACUNC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUA-GA GUG-----UA G-CA-GAGGG GGG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-N-NUGU C--AA-CU-- -------A|G -UU-GU-CGG -AU-CU---- ---------- 1681 -(AAN-NN)A ---------- ---------- ---------- -------GGN -UUUGG-UAA 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------C ---UUCN--- -AA----GCU 1981 -CGC-U--(- GAGA-)-GGU -G-AGAG--- UG-------- --CCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- NGC------- ----AN---| UGA-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AG-CA----- ---------- ---------- --UU(---GA ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-C- C)-CACUCCG -UGAACU-C. .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.spNm84 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas sp. str. Nm84. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas sp. str. Nm84. ORGANISM Nitrosomonas sp. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46929|g975697 isolate_name= Nm84 BASE COUNT 52 a 44 c 64 g 42 t 4174 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....U----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-NCN-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC...... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.spNm86 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas sp. str. Nm86. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas sp. str. Nm86. ORGANISM Nitrosomonas sp. REFERENCE 1 AUTHORS Stehr,G., Boettcher,B., Dittberner,P., Rath,G. and Koops,H .-P. TITLE The ammonia-oxidizing nitrifying population of the River Elbe estuary JOURNAL FEMS Microbiol. Ecol. 17, 177-186 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46932|g975698 isolate_name= Nm86 BASE COUNT 61 a 38 c 61 g 45 t 4171 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... GAGU---AAU -AC-AUCGG- A-A--CGU-A U-CUUA---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -NNNU-G--C UAAUACC-GC 481 AU-ACA---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GUAGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUUA--U- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (C........ ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.ureae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas ureae str. Nm10. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas ureae str. Nm10. ORGANISM Nitrosomonas ureae. REFERENCE 1 AUTHORS Pommerening-Roeser,A., Rath,G. and Koops,H. TITLE Phylogenetic diversity within the genus Nitrosomonas JOURNAL Syst. Appl. Microbiol. 19, 344-351 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46993|g1592815 isolate_name= Nm10 BASE COUNT 334 a 249 c 367 g 259 t 3167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUCGG- A-A--CGU-G U-CCUU---A -AGUG-G-GG 421 -GAU-AA-CG C--------- ------AU-- C(-GAAA-)G -AUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AGC---G-|G CCGAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-NCG-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-AG-UU 1021 --GA-GAA-- GA-A-AA-AA --UUC-UNG( C----UAAUA -----N---) NCAG-AA-UU 1081 ---------- -------C-A N-GA-CGGN- A-UCG-A-CA G-AA--GAAG ---------C 1141 -ACCSGCU-N ACUNC-GUG( CCA--GCAGS CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GU -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-GACUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAAG- AACA-UCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACA-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-N-NUGU C--AA-CU-- -------A|G -UU-GU-UGG -GC-CU---- ---------- 1681 -(UAU-UA)N ---------- ---------- ---------- -------NGA -UUUGG-UAA 1741 CG--NA---- --GC-(UAA- ---C)G-CG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGNUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UG|--- ---------N ---UUGN--- -AA----UNU 1981 -UNC-A--(- GAGA-)-UGN -A-NNUG--- UG-------- --CNC----- --(GN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GNG------- ----AA---| UCU-AA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AG-CA----- ---------- ---------- --UU(---GA ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CUCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAA..... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nmn.ureae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosomonas ureae str. Nm10. ACCESSION No information KEYWORDS No information. SOURCE Nitrosomonas ureae str. Nm10. ORGANISM Nitrosomonas ureae. REFERENCE 1 AUTHORS Pommerening-Roeser,A. and Koops,H. TITLE Diversity of phylogenetic relationships among the lithotrophic ammonia-oxidizing bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46995|g1124983 (bases 1 to 290) isolate_name= Nm10 BASE COUNT 148 a 125 c 179 g 127 t 3797 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .....GUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GU -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UACA A-GACUA-GA GUG-----UG G-CA-GAGGG GGG-U|GGAA 1381 UU-CCAUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAAG- AACA-UCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACA-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-N-NUGU C--AA-CU-- -------A|G -UU-GU-UGG -GC-CU---- ---------- 1681 -(-UA-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| ........CA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AA--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|N 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-NCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGC-G-CG -UA--CAGAG GGU-A-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCCAA-U CUCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAA..... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.9 METHYLOPHILUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.9 METHYLOPHILUS_GROUP. ORGANISM 2.14.2.9 METHYLOPHILUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s12 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s12. str. s12. ACCESSION No information KEYWORDS No information. SOURCE str. s12. str. s12. ORGANISM str. s12. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69316|g1181098 isolate_name= s12 BASE COUNT 100 a 67 c 105 g 74 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GACUA-GA AUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA UUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -UG-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCC -AUGAG-UAA 1741 CG--CA---- --S--(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlp.methy1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylophilus methylotrophus str. AS1 ATCC 53528. ACCESSION No information KEYWORDS No information. SOURCE Methylophilus methylotrophus str. AS1 ATCC 53528. ORGANISM Methylophilus methylotrophus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 53528 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15475 ATCC 53528 = IMET 10786 = NCIMB 10515 (T) isolate_name= AS1 BASE COUNT 397 a 310 c 436 g 320 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGA-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A CC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G C-CUUG---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-NC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUA--C- G--UUA---- 661 ----UAAG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AA 1021 --GG-GAA-- GA-A-AA-CU --UAC-AUU( C----UAAUA -----A---) AGUG-UG-AG 1081 ---------- -------G-C U-GA-CGGU- A-CCU-U-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--NNAGC CNCGNNN-A) U-A-C-GUAG |-GGUN-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UACA A-GACUA-GA AUA-----UG U-CA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCNUG-- ---------- ---------- ---------G 1501 GAU--AA-UA UUGACG-CUC AU-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -UG-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCC -AUGAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CCC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAU-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-CU CAU-G-GC-C NUUAU-G-GC -CA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG AGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-N-AUC- GUAGUCCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-AU-UA-CC A-CGGU-AGU AUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlp.methyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylophilus methylotrophus str. AS1 ATCC 53528. ACCESSION No information KEYWORDS No information. SOURCE Methylophilus methylotrophus str. AS1 ATCC 53528. ORGANISM Methylophilus methylotrophus. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 53528 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29021 ATCC 53528 = IMET 10786 = NCIMB 10515 (T) isolate_name= AS1 BASE COUNT 410 a 314 c 452 g 308 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGA-A -UGC-UU--A ACAC-AUGCU A-GUC-GAAC 121 G--AU-C--A AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G AGUG-GCGG- 361 -A-CG-GG-C GAGU---ACU AAU-CUCGG- --A--CGU-G C-CUUG---U -CGUG-G-GG 421 -GAC-AA-CU A--------- ------GU-- C(-GAAA-)G -AUCA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- ---------G 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CC-AA--C- G--UUAA--- 661 ----UAAG-- AGC---G-|G CCGAU----- -GU|----CU G--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UR| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CURA-GA-C ACG)--GUCC -AGA-C-UC- -(URCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCV UUCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCUV| UUUC-GC-RA 1021 --GG-GAA-- GA-A-AA-CU --UAC-AUU( C----UAAUA -----A---) AGUG-UG-AG 1081 ---------- -------G-C U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCAAUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUAAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- -CG-CAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUH -GG-G-UAC- 1321 -UGCG-UUUG A-AAC-UACA A-AGCUU-GA AUA-----UG U-CA-GAGGG GGG-U|CGAA 1381 UU-CCACGU- GUA-G-A(-G UGAAA)-UGC -GU-GGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CC-CCUG-- ---------- ---------- ---------G 1501 GAU--AA-UA UUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -UG-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCC -AUGAG-UAA 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UGAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-UC--G 1861 C-A--CAGAG CGGUGG-AUU AGU-GG-UGA -UUGAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A AG)------- GG-------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -G-)-CCAGC AA-------- CGAG-C--GC AACCA-AA-G |-CC--AUA- 2281 AAUAUAGC-C AU-CA----- ---------- ---------- ----(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------AG|G 2701 G-CA-CUAU- U-AAU-G--G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 GUAA-GGG-A UG-ACGUCGU -A-AGUC-CU CAU-G--C-C CUAAU-GGAG GCA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG AGU-U-G-C- CA-A-C-C(G 2881 CCGA)GGGG- ---------- GAAGCUAA-U CUCAG-AAAG -CC-N-AUC- GUAGUCCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGAGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UAGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-VGG- UA-UU-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGG--G-A V-AU-UA-CC A-CGGU-AGU AUU-CA-UG- ACU-GGGG-U 3301 N---AAGUR- ANNA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G7.. ACCESSION No information KEYWORDS No information. SOURCE clone G7. ORGANISM clone G7. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91178|g984101 BASE COUNT 97 a 71 c 107 g 71 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 U-GA-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCG-UUUG A-AAC-UCCA A-AGCUA-GA GUA-----UG G-GA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCCUG-- ---------- ---------- ---------G 1501 CUU--AA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -GA-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCU -CUUAG-UAA 1741 CG--CA---- ---C-(KAA- ---C)G-CG- UGAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbs.flagel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacillus flagellatum str. KT1. ACCESSION No information KEYWORDS No information. SOURCE Methylobacillus flagellatum str. KT1. ORGANISM Methylobacillus flagellatum. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95651 isolate_name= KT1 BASE COUNT 373 a 310 c 444 g 304 t 2945 others ORIGIN 1 .......... .......... .......... ....ANCUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -C-GGGG-AG (--CU----- ---------- ---------- 241 --------UU -)CU-CCCUU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G U-CCAA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-ACU---- ---------- ---------- ---------- ---GYY-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--UUA---- 661 ----AUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( -U-AAA-AG) CC-UNACY-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCB -DGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUC-GC-AA 1021 --GG-ANA-- GA-A-AA-CU --UAU-CCA( C----UAAUA -----C---) UGGA-UG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAMC CGCGGUD-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-KAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-GAC- 1321 -UGCG-UUUG A-AAU-ACAA G-GNUUA-GA GUA-----UG G-GA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUC AU-G------ -------CK- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -UG-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCC -AUUAG-UAA 1741 YK--YN---- --SN-(UAA- ---C)--UG- UGAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-WCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AUU A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- ----C----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----NA---| AGU-GG-ACA |---C|A--G 2161 GU-GU-CGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-G(-UGA G)-AUGUU-U 2221 GG-G-(UUAA -GU)-CCCNN NN-------- CGAG-C--GC AACCC-UU-G |-CC--AAU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AUU-GG-G A-CU-G-CCG --GU(-GA-C WA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-UCA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- WA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-CK -AA-CS---- ---------- ---------- -----(---- -GSRA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbs.metha3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacillus "methylovora" str. M12-4 ATCC 21852 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylobacillus "methylovora" str. M12-4 ATCC 21852 (T). ORGANISM Methylobacillus "methylovora". REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 21852 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95660|g175217 Former RDP Sids: Mlm.metha3 ATCC 21852 (T) = NCIMB 11376 isolate_name= M12-4 NB: Bratina et al. state this is Methylomonas methanolica not same seq as Mbs.methyl ATCC 21852 corresponds to Methanomonas methylovora former name Methylomonas methanolica BASE COUNT 378 a 301 c 428 g 290 t 2979 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUNA AGAGUU(U-N A)N-CCU|-G 61 GCUCAG-AUW -NAAC-GC-- UVGC-GGC-A -UGC-NN--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CW-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCRA- 361 -A-CG-GG-U GAGU---AAU -AU-AUCGG- A-A--CGU-G U-CCAA---U -AAUG-G-GG 421 -GAN-AA-CU A--------- ------GU-- C(-GAAA-)G -AUWA-G--C UAAUACC-N- 481 AU-ACG---- ---------- ---------- ---------- ---NN--(-- --------UN 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GNGGGG- RA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCWMA--C- G--UUA---- 661 ----NUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 N-AG-C-UR| -G-UCU--(R -AGA)-GGAU ----NA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCU -(-RNG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GANAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU MAA--GCUM| UUUC-GC-AA 1021 --GG-AAA-- GA-A-AA-CU --UAC-AUA( U----UAAUA -----C---) UAUG-UG-AG 1081 ---------- -------G-A U-GA-CGGU- A-CCU-U-GA U-AA--GAAG ---------C 1141 -ANCGGCU-A ACUAC-GUG( CCA--GCAGG CNNCGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUURA UC-GGAAUUA -CU-GGGC|G NNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-A)A-CCU -GG-G-NAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCNA-GA GUA-----UG G-GA-GAGGG AGG-U|AGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUNACG-CUM AU-G------ -------CU- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -UG-GA---- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- -------UCC -AUUAG-UAA 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UGAA-GUAGA C|N|G-CCU- R-GGGAGUAC 1801 GGU-N---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-R---- 1861 C-A--CA-AG CGGUNG-AUN A-U-GU-GGA -UNAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUWA-CC URG-CC-UWG ACA-UG|--- ---------C ---CACW--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-NAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-NC-N-CA UN|G-CNN-- UMG-UNA|-G N-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC WA-------- CGAG-C--GC U-CCC-UU-G |-CC--AAU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CN-CU-U- U-AUU-GG-N A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GUGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-CU CAU-G--C-C CUUAU-G-GC -CN--GGGC- 2821 U-UCA-CA-C GUA--AUACU AUGGU-C-GG -UA--CUGAG GGU-U-G-C- NN-NCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-N-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACURCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UMG-CGGUN- AAUAC-GUU- CC--GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCARUGGG A--GU-NGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-C-CN -AA-CM---- ---------- ---------- -----(---- -GWAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C N-CU-UA-CC A-CGGU-NGG AUU-CA-KR- ACNAGGGG-U 3301 N---AAGUC- NNNA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbs.glycog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacillus glycogenes str. T-11 ATCC 29475 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylobacillus glycogenes str. T-11 ATCC 29475 (T). ORGANISM Methylobacillus glycogenes. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29475 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95652 ATCC 29475 (T) = LMG 6786 = LMG 6082 = JCM 2850 = IMET 10774 = NCIMB 11375 biol_source= decaying tomato isolate_name= T-11 BASE COUNT 351 a 293 c 415 g 271 t 3046 others ORIGIN 1 .......... .......... .......... ...NAACURA AGAGUU(U-N A)UGCCU|-G 61 GCUCAG-AUW -NAAC-GC-- UNGC-G-N-A -UGC-WN--W ACAC-AUGCA A-GUC-RAAC 121 G--GC----A GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CGGAG-AG (--CN----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAU -AU-AUCGG- A-A--CGU-G U-CCAA---U -AAUG-G-GG 421 -GAW-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-N- 481 AU-ACG---- ---------- ---------- ---------- ---CGCG(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- NN--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCWNA--C- G--UUA---- 661 ----RUGG-- AGC---G-|G CCGAU----- -AU|----CU N--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-NAA-AG) -C-CUACN-A A|-GGC-RA- CNA------- -----UC-AG 781 N-AG-C-WN| -G-UMU--(N -AGA)-NNAU ----GA-U-- CAG-C|C-AC -ACURG-G-A 841 (CUGAAGA-C ACG)--GCCN -NGA-C-UCU -(-AMG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G -C(--NN-CG --)GG-UUGU NAA--GCUN| UUUC-GC-AA 1021 --GG-AAA-- GA-A-AA-CU --NAC-AUG( U----AAAUA -----A---) UGUG-UG-AG 1081 ---------- -------G-U U-GA-CGGU- A-CCU-U-GA U-NA--GAAG ---------C 1141 -NCCGGCU-N GCNNC-GUG( CNN--GCNGC CNCGGNN-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-WU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-A)A-CCU -GG-G-NAC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCWN-GA GUW-----UN G-NN-NAGGG GNN-N|WGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -CCCCNNN-- ---------- ---------- ---------G 1501 CCU--NA-UA CURACG-CUN AG-G------ -------CU- N-NNAA-GC- GU-GGG-GA- 1561 GC-RAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-CU-- -------V|G -UU-GU-UGG -GA-GA---- ---------- 1681 -(GUN-AA)A ---------- ---------- ---------- -------UCU -NUUAG-UAA 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UNAA-GUUGA C|H|G-CCU- G-GGGWGUAC 1801 GGU-C---(G CAA)---G-A UN-AAAACUC -RAA-GGAAU UG-RCGGG-G -R-C-CN--G 1861 C-A--CA-AG CGGUNG-AUN A-U-GU-GGA -UURAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCUUA-CC UNG-CC-NNG ACA-UG|--- ---------C ---CACU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-YAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC RACCC-UU-G |-CC--AAU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CW-CU--- U-AUU-GG-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU NAU-R--C-C CUNAU-G-GC -MA--GGGC- 2821 U-UCA-CA-C GUA--AUACN AUGGU-C-GG -UA--CAGAG GGU-U-G-C- NN-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCURA-U CUCAG-AAAG -CC-N-AUC- GUNGUCCGGA 2941 U-UGUAGUC- (UGCNAC-U- N)-GACUNCR -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCN-GGG-CN UNGUA----C 3061 ACACCNNNC- GNC-ACA--- --CCA-UGGG A--GU-NGG- UU-NC-ACCA -GAA-G-UAG 3121 G-UAG-C-CN -NA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C N-NN-NN-CC A-CGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbs.methyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacillus "methylovora" str. M12-4 ATCC 21852 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylobacillus "methylovora" str. M12-4 ATCC 21852 (T). ORGANISM Methylobacillus "methylovora". REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 21852 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95661 Former RDP Sids: Mlm.methyl ATCC 21852 (T) = NCIMB 11376 isolate_name= M12-4 NB: Bratina et al. have same ATCC# for Mbs.metha3 & Mbs .methyl not same seq as Mbs.metha3 1990 NCIMB cat:Methylomonas methylovora -> Methylophilus methylotrophus former name Methylomonas methylovora BASE COUNT 389 a 306 c 423 g 275 t 2983 others ORIGIN 1 .......... .......... .......... ...AAACUNA AGAGUU(W-N A)U-SCU|-R 61 GCUCAG-AUN -VAAC-GC-- UGGC-GC--A -UGC-NN--U ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---RAU -AU-AUCGG- A-A--CGU-G U-CCAA---U -AAUG-G-GG 421 -GAW-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-N- 481 AU-ACG---- ---------- ---------- ---------- ---CACA(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GNGGGG- NN--WC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCNNA--C- G--UUA---- 661 ----NUGG-- AGC---G-|G CCGAU----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-NAA-AG) -C-CUACN-A A|-GGC-GA- CGA------- -----UC-AG 781 N-AG-C-NN| -G-UCU--(G -AGA)-NNAU ----NA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGR-AAUUUU G-GACNAU-- GG-GC-(GCA A)-GCC-WNA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G -C(--WW-CG --)GG-UUGU MAA--GCUM| UUUC-GC-AA 1021 --GG-AAA-- GA-A-AA-CU --UAC-AUG( U----AAAUA -----A---) UGUG-UG-AG 1081 ---------- -------G-U U-GA-CGGU- A-CCU-U-GA U-AA--GAAG ---------C 1141 -WCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-NCNA- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA--C-C CC-GGG-C(- UN-A)A-CCU -GG-G--AC- 1321 -UGCG-UUUG A-AAC-UACA A-GGCUN-GA GUA-----UN G-GA-GAGGG GGG-N|NGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCA-- -CCCCCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUNACG-CUC AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-RN-UGG -GA-GA---- ---------- 1681 -(GUN-AA)R ---------- ---------- ---------- -------NCU -NUUAG-UAA 1741 CG--CM---- --GN-(NAA- ---C)G-CG- UNAA-GUUGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UN-NAAACUC -NAA-GGAAU UG-ACGGG-G -R-C-CN--G 1861 C-A--CN-AG CGGUNG-ANU A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAAA 1921 A-CCWWA-CC URG-CC-WWR ACM-UG|--- ---------C ---CACW--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| AGU-GG-ACA |---C|A--G 2161 GU-NC-N-CA UN|G-CNN-- UCG-UMA|-G C-N---NG-U |GU-M(-GUG A)-GAUGW-A 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-CC--AAU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- --UU(---AC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------WR|G 2701 G-CA-CU--- U-AAU-AR-G G-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UR-GGG-A UG-ACG--UN -A-AGUC-CU CAU-N--C-C -UUAU-G-GC -CA--GGGC- 2821 U-UCA-CA-C GUA--AUACN AUGGU-C-GG -UA--CAGAG GGU-U-G-C- NA-A-C-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-N-AUC- GUAGUCCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 G-UAG-CCNU GAA-CN---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGAAGG-G-C N-CU-UA-CC A-CGGU-NGG AUU-CANUAG ACA-GGGG-U 3301 N---AAGUM- NNNA-CAAGG UAGC--G-A. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.2.10 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.2.10 SBR_ISOLATES_V. ACCESSION No information KEYWORDS No information. SOURCE 2.14.2.10 SBR_ISOLATES_V. ORGANISM 2.14.2.10 SBR_ISOLATES_V. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1033 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1033. str. SBR1033. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1033. str. SBR1033. ORGANISM str. SBR1033. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84476|g871597 isolate_name= SBR1033 BASE COUNT 99 a 88 c 136 g 69 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACNC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-A U-CCUG---U -AAUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- C(-GAAA-)G -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 GA-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUCA--C- G--UUA---- 661 ----UAGG-- AGC---G-|G GCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GA-AG- N-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UC-CG --)GG-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1058 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1058. str. SBR1058. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1058. str. SBR1058. ORGANISM str. SBR1058. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84493|g871614 isolate_name= SBR1058 BASE COUNT 90 a 96 c 147 g 62 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACNC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--CGU-G C-CCCG---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------CG-- C(-GAAA-)G -CGGC-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--CCU--- 601 --(------- ---GCAA--- ---)------ ----GGG--| -CCUCG--C- G--CUC---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1002 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1002. str. SBR1002. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1002. str. SBR1002. ORGANISM str. SBR1002. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84450|g871571 isolate_name= SBR1002 BASE COUNT 89 a 94 c 143 g 62 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-UU--U ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GG (--GC----- ---------- ---------- 241 --------AA -)CC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--CGU-A C-CCCG---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------CG-- C(-GAAA-)G -CGGC-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CUC---- 661 ----UGGG-- AGC---G-|G NCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UNCC-GN-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GN-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1074 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1074. str. SBR1074. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1074. str. SBR1074. ORGANISM str. SBR1074. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84506|g871627 isolate_name= SBR1074 BASE COUNT 89 a 95 c 147 g 62 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGG-A -UGG-UU--U ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--CGU-A C-CCCG---G -AGUG-G-GG 421 -GAU-AA-CG C--------- ------CG-- C(-GAAA-)G -CGGC-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CUC---- 661 ----UGGG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2038 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2038. str. SBR2038. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2038. str. SBR2038. ORGANISM str. SBR2038. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84577|g871698 isolate_name= SBR2038 BASE COUNT 87 a 94 c 145 g 63 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGN-UU--U ACNC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--CGU-A C-CCCG---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------AG-- C(-GAAA-)G -UUGG-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CUC---- 661 ----UGGG-- AGC---G-|G NCGAU----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2025 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2025. str. SBR2025. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2025. str. SBR2025. ORGANISM str. SBR2025. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84567|g871688 isolate_name= SBR2025 BASE COUNT 81 a 94 c 147 g 65 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -UGC-UU--G ACNC-NUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-AUCGG- A-A--CGU-G U-CCGG---G -AGUG-G-GG 421 -GAU-AA-CC C--------- ------GC-- C(-GAAA-)G -GCGG-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GGGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCC--C- G--CUU---- 661 ----UCGG-- AGC---G-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3-GAM 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3 GAMMA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3 GAMMA_SUBDIVISION. ORGANISM 2.14.3 GAMMA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.1 ECTOTHIORHODOSPIRA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.1 ECTOTHIORHODOSPIRA_ASSEMBLAGE. ORGANISM 2.14.3.1 ECTOTHIORHODOSPIRA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hrh.halchl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halorhodospira halochloris str. BN 9851. ACCESSION No information KEYWORDS No information. SOURCE Halorhodospira halochloris str. BN 9851. ORGANISM Halorhodospira halochloris. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93483 isolate_name= BN 9851; 51/12 BASE COUNT 341 a 363 c 491 g 278 t 2903 others ORIGIN 1 .......... .......... .......... ........GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC--U--A AC-C-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGG-A--U UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GUGGGC- CUC-UG---- 601 --(------- ----AUU--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----AAGA-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AU-UG 1021 --GG-GAG-- GA-A-AG-UU --GCA-CGG( U----UAAUA -----G---) CUGU-GC-GA 1081 ---------- -------G-U U-GA-CGUU- A-CCC-A-AA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGCG U-AGCUA-GA GUC-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUN-- ---------- ---------- ---------G 1501 ACC--GA-GA CUUACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGA G--GA-CU-- -------A|G -CU-GU-UCG -GU-UC---- ---------- 1681 -(GCA-CU)A ---------- ---------- ---------- -------GAA -CUGAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AG----CCC 1981 -UCU-G--(- GAGA-)-CGG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAU-G-GG -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-C-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UGC 3121 G-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CG-UA-CC A-CGGU-GUG GU--GG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.halochl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira halochloris str. A ATCC 35916. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira halochloris str. A ATCC 35916. ORGANISM Ectothiorhodospira halochloris. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35916 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59152 isolate_name= A BASE COUNT 341 a 360 c 485 g 274 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNAACCGA AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UNGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GGUN-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGN-A--U UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGC- CUC-UN---- 601 --(------- ----AUU--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----ANNN-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AU-NG 1021 --GG-GAG-- GA-A-AG-UU --GCA-CGG( U----UAAUA -----G---) CUGU-GC-GA 1081 ---------- -------G-U U-GA-CGUU- A-CCC-A-AA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUCG A-UAC-UGCG U-AGCNA-GA GUC-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUN-- ---------- ---------- ---------G 1501 ACC--GA-GA CUNACG-CUG AG-G------ -------CG- N-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGA G--GA-CU-- -------A|G -CU-GU-UCG -NU-UC---- ---------- 1681 -(GCA-CU)A ---------- ---------- ---------- -------GAA -CUGAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AG----CCC 1981 -UCU-G--(- GAGA-)-CGG -A-GGNC--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAU-G-GG -CN--NGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-N-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UGC 3121 G-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CG-UA-CC A-CGGU-GUG GUC-GG-CG- ACN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hrh.abdelm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halorhodospira abdelmalekii str. BN 9840. ACCESSION No information KEYWORDS No information. SOURCE Halorhodospira abdelmalekii str. BN 9840. ORGANISM Halorhodospira abdelmalekii. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93477 isolate_name= BN 9840; 51/20 BASE COUNT 344 a 359 c 489 g 282 t 2902 others ORIGIN 1 .......... .......... .......... ........GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAACGGC-- UGGC-GGC-A -UGC-CU-AA ACAC-AUGCA AGGUC-GAGC 121 G--GC-AS-G NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAUG-AG (--CU----- ---------- ---------- 241 --------UK -)CU-C-UUC AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GA GCG|-GC--G AGCGCSCGG- 361 -A-CG-GGCU GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGG-A--U UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GUGGGC- CUC-UG---- 601 --(------- ----AUU--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----AAGGG- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)--CC-UGA UCCA|-GCAA UGCC-SC-GU 961 G-U-GU-G-A A-GUA--G-G -C(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AU-UG 1021 --GG-GAG-- GA-A-AG--U --GCA-CGG( U----UAAUA -----G---) CUGU-GC-GA 1081 ---------- -------G-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |GNGCG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCKG A-UAC-UGCA U-RGCUA-GA GUU-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--GA-GA CUGACG-CUG AG-G------ -------CG- C-GAAA---- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGA G--GC-CU-- -------A|G CCU-GU-UCG -GU-UC---- ---------- 1681 -(GCA-CU)A ---------- ---------- ---------- -------GAA -CUGAG-UGG 1741 CG--CA---- --GU-(AAA- ---C)G-CA- UUAA-GUCCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- -U-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC----UUG ACA-UC|--- ---------C ---UCGG--- -AG----CCC 1981 -UCU-G--(- GAGA-)-CGG -A-GGGU--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ----(---UU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-C-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UA-UA-AUC 3001 -C-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UGC 3121 G-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CG-UA-CC A-CGGU-GUG GU--GG-CG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hrh.halph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halorhodospira halophila str. BN 9630. ACCESSION No information KEYWORDS No information. SOURCE Halorhodospira halophila str. BN 9630. ORGANISM Halorhodospira halophila. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93484 isolate_name= BN 9630; 51/3 BASE COUNT 346 a 368 c 495 g 287 t 2880 others ORIGIN 1 .......... ........CC GUGSCCKCUA CCGACUUGCA UGUBUU(U-G A)G-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C CC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UUU-U A-CCUU---C -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-GC 481 AU-AGC---- ---------- ---------- ---------- ----GC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGC- CUC-UG---- 601 --(------- ----AUU--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-GA CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ---GAU-C-- AAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AU-CG 1021 --GG-GAG-- GA-A-AA-GC --GUU-GGG( U----UAAUA -----C---) CCUG-GC-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CA- 1261 G-GU-AAG|U CGG---GUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGCU U-GACUA-GA GUU-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UCC -GU-AGAUUA UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGA G--AA-CU-- -------A|G -CC-GU-UGG -GC-CU---- ---------- 1681 -(AUU-AU)- ---------- ---------- ---------- -------AGG -CUUAG-UGG 1741 CG--CA---- --GU-(AAC- ---C)G-CAU UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AG----CCU 1981 -UCU-G--(- GAGA-)-CAG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUKC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G--C-C CUUAU-G-GG -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- CA-AUC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-C-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UGC 3121 G-UAG-U-CU -AA-CU---- ---------- ---------- -----(---- --UCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CG-UU-AC A-CGGU-GUG GUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.halophi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira halophila str. SL 1 DSM 244. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira halophila str. SL 1 DSM 244. ORGANISM Ectothiorhodospira halophila. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 244 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26630 isolate_name= SL 1 BASE COUNT 334 a 357 c 483 g 272 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CGG|-CN--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UUU-A C-CNUU---C -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-NN 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UN 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGN- NUC-UG---- 601 --(------- ----AUG--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----ANNN-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-NNA UCCA|-GCNA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CN(--UN-CG --)GG-UUGU AAA--GCAC| UUUC-AU-CG 1021 --GG-GAG-- GA-A-AA-GC --GUC-GGG( U----UAAUA -----C---) CCUG-GC-GU 1081 ---------- -------C-U N-GA-CGUU- A-CCC-N-AA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GAAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 G-GU-AAG|U CGG---GUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGCU U-GGCNA-GA GUU-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--GN-AA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGA G--AA-CU-- -------A|G -CC-GU-UGG -CC-UC---- ---------- 1681 -(UCU-UA)U ---------- ---------- ---------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CCC 1981 -UCU-G--(- GAGA-)-CGG -A-GGNN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CNG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|N 2701 N-NA-CU-C- U-AGG-NN-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAU-G-GG -CN--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- CA-AUC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-N-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UGC 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CG-UA-CC A-CGGU-GUG GUC-GG-CG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hrh.halphl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halorhodospira halophila str. BN 9624. ACCESSION No information KEYWORDS No information. SOURCE Halorhodospira halophila str. BN 9624. ORGANISM Halorhodospira halophila. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93474 isolate_name= BN 9624; 51/1 BASE COUNT 341 a 361 c 483 g 279 t 2912 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -KAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GC--GA-C 121 G--GC-AA-C SC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UUU-A C-CCUU---C -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GUGGGC- CUC-UG---- 601 --(------- ----AUG--- ---)------ -----CA-A| -GCUCA--C- G--CCG---- 661 ----AAG--- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GRA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AU-CG 1021 --GG-GAG-- GA-A-AA-GC --GUC-GGG( U----UAAUA -----C---) CCUG-GC-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -GCCGGCA-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGCG-C-- 1201 AAC-CGUUAA UC-GGAAUCA -CU-GGCC|G UAAA-GGGC- CCG-UAG-GC -G|-GC-CA- 1261 G-GU-AAG|U CGG---GUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGCU U-GGCUA-GA GUU-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)-CGA- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GU- G--GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--AC-CU-- -------A|G -CC-GU-UGG -CC-UC---- ---------- 1681 -(UCU-UA)U ---------- ---------- ---------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GU-(AAG- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CCC 1981 -UCU-G--(- GAGA-)-CGG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AGGGGA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ASG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CG--GNGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAGAG GGU-U-G-C- CA-AUC-C(G 2881 -CGA)GGUG- ---------- VA-GCUAA-U CCCUG-AAAG -CC-C-GUC- CUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAAAG-UGG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUC-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ard.aquaeo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arhodomonas aquaeolei str. HA-1 ATCC 49307 (T). ACCESSION No information KEYWORDS No information. SOURCE Arhodomonas aquaeolei str. HA-1 ATCC 49307 (T). ORGANISM Arhodomonas aquaeolei. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49307 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26631 isolate_name= HA-1 BASE COUNT 333 a 364 c 488 g 277 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUN-NC (--UU----- ---------- ---------- 241 --------CG -)GG--AG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUU---U -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GUGGCC- CUC-UG---- 601 --(------- ----AA---- ---)------ -----UA-U| -GGUCA--C- G--CCG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(U -AGC)-GGAC ----GA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-NNA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--UG-CG --)GG-UUGU AAA--GCCC| NUUC-AG-CC 1021 --GG-GAG-- GA-A-AA-GC --AUU-CGG( U----UAAUA -----C---) CCGG-AU-GU 1081 ---------- -------A-U U-GA-CGUU- A-CCG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-CG- 1261 G-AU-AAG|U CGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUCG A-UAC-UGUC U-GGCUA-GA GUC-----UG G-CA-GAGGG AGG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 GCC--AA-GA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -CC-UCA--- ---------- 1681 -(-UU-UA)- ---------- ---------- -U-------- -------GAG -GCUCG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUCU C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GUC-A--(- GAGA-)-UGA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 GG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGUC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUGCU-AAAG -CC-G-GUC- CCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCANU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-NC-ACCA -GAA-G-UCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-NC-GC-CN A-CGGU-GUG GUC-GA-NG- NCN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nc.mobilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrococcus mobilis. ACCESSION No information KEYWORDS No information. SOURCE Nitrococcus mobilis. ORGANISM Nitrococcus mobilis. REFERENCE 1 AUTHORS Teske,A., Alm,E., Regan,J.M., Toze,S., Rittmann,B.E. and Stahl,D.A. TITLE Evolutionary relationships among ammonia- and nitrite-oxidizing bacteria JOURNAL J. Bacteriol. 176, 6623-6630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35510|g530889 BASE COUNT 344 a 359 c 493 g 286 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGCCUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---C -GGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUCG--C- A--CCG---- 661 ----AUGG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--UG-CG --)GG-UUGU AAA--GCCC| UUUC-AG-CC 1021 --GG-GAG-- GA-A-AA-GC --AUC-GGG( U----UAAUA -----C---) CUCG-AU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GU-CG- 1261 A-AU-AAG|U CGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGUU U-GGCUA-GA GUC-----UG G-UA-GAGGG AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCUCCUG-- ---------- ---------- ---------G 1501 AUC--AA-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--GA-CU-- -------A|G -CC-GU-UGG -AU-UCA--- ---------- 1681 -(-UU-UA)- ---------- ---------- -U-------- -------GAG -UCUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUCCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------U ---CCGG--- -AA----CCU 1981 -UGC-A--(- GAGA-)-UGU -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-GA-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUU- 2281 AG--UUAC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-ACCA -GAA-G-UCG 3121 G-UAG-U-CU -AA-CCUUC- ---------- ---------- -----(---- --UUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GA AGGGGG-G-C G-CUNGC-C- A-CGGU-GUG GUC-GA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.haloal2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira haloalkaliphila str. BN 9902. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira haloalkaliphila str. BN 9902. ORGANISM Ectothiorhodospira haloalkaliphila. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93475 isolate_name= BN 9902; C BASE COUNT 354 a 340 c 475 g 296 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-AG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACU-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CC--UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --GGG-CGC( U----UAAUA -----C---) GUGC-UU-GU 1081 ---------- -------C-U U-GA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GU -G|-GU-UA- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UCUG A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GG- UG-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-UU-GU--A 1621 AAC-G-UUGA G--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------CCC -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGAA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG AA-GU-UGG- CU-GC-ACCA GGAA-G-UGG 3121 A-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-A-C G-UU-CA--C A-CGGU-GUG GUC-AA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.haloalk 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira haloalkaliphila str. BN 9903. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira haloalkaliphila str. BN 9903. ORGANISM Ectothiorhodospira haloalkaliphila. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93479 isolate_name= BN 9903; 51/7 BASE COUNT 363 a 345 c 484 g 302 t 2882 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACU-GC 481 AU-ACCG--- ---------- ---------- ---------- ---CCU-(-- ---------A 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAU--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC G-GGG-UGC( U----UAAUA -----C---) GUGC-CU-GU 1081 ---------- -------C-U U-GA-CAUC- NUCCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCA-C CGCGGUA-A) U-A-C-GGAG |-GGYG-C-- 1201 AAG-CGUUAA UC-GGAAUYA -CU-GGGC|G UAAA-GSGC- RCG-UAG-GY -G|-GU-UA- 1261 U-GU-AAG|U CMA---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UCUG A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- --------|G -CC-GU-UGG -GG-G----- ---------- 1681 -(-AU-UA)A ---------- ---------- ---------- --------CC -UUUAG-UGG 1741 CG--CM---- --GU-(AAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AVC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGGG-- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCCCUU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGAA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG AA-GU-UGG- CU-GC-ACCA GGAA-G-UGG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA-CC A-CGGU-GUG -UC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAAGU-CGUA A(CAA-G)GU AAG....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira marina str. BN 9914. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira marina str. BN 9914. ORGANISM Ectothiorhodospira marina. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93476 isolate_name= BN 9914; Matheron BA 1010 BASE COUNT 364 a 348 c 478 g 305 t 2881 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGN--U--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-AG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACU-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------U 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUUG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--C GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --GGG-CGC( U----UAAUA -----C---) GUGC-UU-GU 1081 ---------- -------C-U U-GA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUGGC-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGCC|G UAAA-GCGC- CCG-UAG-GU -G|-GU-UA- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UCUG A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------CCC -CUUAG-UGG 1741 CG--CA---- --GU-(AAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UGC-A--(- CAGA-)-UGC -G-GGAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)CCCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAUUGGRC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CCUG-GUC- GUAGUCCGAA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-C CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG AB-GU-UGG- CU-GC-ACCA CGAAUG-UGG 3121 A-UAG-U-CA -UA-UAC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA-CC A-CGGU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.marismo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira marismortui str. BN 9410. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira marismortui str. BN 9410. ORGANISM Ectothiorhodospira marismortui. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93482 isolate_name= BN 9410; Oren EG-1 BASE COUNT 357 a 347 c 477 g 281 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UAC-CC (--UU----- ---------- ---------- 241 --------CG -)GG--UG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------CAG- CCG|-AC--G AGUG-GCGG- 361 -A--G-GG-U GAGU---AAC -CC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-AG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACU-GC 481 AU-ACC---- ---------- ---------- ---------- ---GCC-(-- ---------U 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GC--UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --GGG-UGC( C----GAAUA -----A---) GCGC-CU-GU 1081 ---------- -------C-U U-GA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC --|----UA- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGCG C-AGUAG-AA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(AAU-AA)A ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--CA---- --CU-(AAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|--CUG-- UCG-UCA|-- --U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AA-G -CC-G-GKC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCK-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UG-- CU-GC-ACCA -GAA-G-UGG 3121 A-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA--C A-CGGU-GUG GUC-AA-UG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.mobilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira mobilis str. BN 9911. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira mobilis str. BN 9911. ORGANISM Ectothiorhodospira mobilis. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93481 isolate_name= BN 9911; Truper 8112 BASE COUNT 353 a 349 c 485 g 288 t 2901 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CC CC-------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------A 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACB-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGNAC-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --GGG-UGC( C----UAAUA -----C---) GUGC-CU-GA 1081 ---------- -------C-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GNNN |-NNAA-G-- 1201 GCG-CGGUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG---AAU- 1321 -UGCA-UCCG A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GCGG- -CUCUBBG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AG-G------ -------UG- N-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-UU-GU--A 1621 AAC-G-CUGA G--GC-CU-- -------A|G -CCUGU-UCG -GU-UC---- ---------- 1681 -(GCA-CU)A ---------- ---------- ---------- -------GAA -CUGAG-UGG 1741 CG--CA---- --GU-(AAA- ---C)G-CA- UUAA-GUCCU C|C|G--CU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---U-GG--- -AA----UCC 1981 --BC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)CCCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--GC AAGAGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-SAGC GKG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AARG -CC-G-GUC- GUAGUCCGAA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGARGU-CG -GAAU-CGY- -UAGWA-AUC 3001 GS-GGH-(UC -AGCAUU)-C CCG-CGGUG- AAUAC-GUU- CCC-GGGGCC UUGUGA---C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CUUGC-ACCA -GAA-G-UGG 3121 A-UAG-U-CU UAA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA-CC A-CGGU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.vacuola 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira vacuolata str. BN 9512. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira vacuolata str. BN 9512. ORGANISM Ectothiorhodospira vacuolata. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93478 isolate_name= BN 9512; beta1 BASE COUNT 355 a 346 c 477 g 289 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --GGG-UGC( C----UAAUA -----C---) GUGC-CU-GA 1081 ---------- -------C-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GC-UG- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGCA C-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-ACG(-G UGAAA)-UCC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-GAGC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GCUAAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--GA-AC-- -------U|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(GUU-UA)A ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--CA---- ---V-(AAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-R UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCN 1981 -YGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUV- ---------- GA-GCUAA-U CCCAA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UG-- CU-GC-ACCA -GAA-G-UGG 3121 A-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA--C A-CGGU-GUG GUC-AA-UG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.shaposh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira shaposhnikovii. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira shaposhnikovii. ORGANISM Ectothiorhodospira shaposhnikovii. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59151 BASE COUNT 351 a 338 c 470 g 292 t 2925 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUNG---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------A 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --GGG-CGC( C----UAAUA -----C---) GUGC-UU-GA 1081 ---------- -------C-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GU -G|-GU-UA- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUN A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--NA-AA CUGACA-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(GUU-UA)A ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- UUAA-GUUCU C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GN-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGUG GGU-U-G-C- CA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CU-N-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUC-AA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ec.shapos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ectothiorhodospira shaposhnikovii str. BN 9912. ACCESSION No information KEYWORDS No information. SOURCE Ectothiorhodospira shaposhnikovii str. BN 9912. ORGANISM Ectothiorhodospira shaposhnikovii. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93480 isolate_name= BN 9912; Truper 8115 BASE COUNT 351 a 344 c 476 g 292 t 2913 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- ---------A 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --GGG-CGC( C----UAAUA -----C---) GUGC-UU-GA 1081 ---------- -------C-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GU -G|-GU-UA- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGCA U-GGCUA-GA GUU-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- CACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACA-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-GA- 1561 GC--AA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CCCGU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(GUU-UA)A ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--CA---- -----(-AA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGUG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG GGAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUG- CCC-GGC-CC UUGUA----C 3061 ACACCGCGC- GUC-ACA--- --CCA-UGGA A--GU-UGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-UU-UU-AC A-CGGU-GU- GUC-AA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.2 CHROMATIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.2 CHROMATIUM_GROUP. ORGANISM 2.14.3.2 CHROMATIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS1.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS1. ORGANISM clone cOS1. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86769|g870914 BASE COUNT 314 a 297 c 428 g 250 t 3087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GNGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G U-CUUU---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----AGGG-- AAG---A-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CNCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --GG-GAC-- GA-A-AA-GG --CGG-GUC( C----UAAUA -----C---) GAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-ACC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAUC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUAG A-AAC-CGGC G-CACUA-GA GUA-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)N-CG- AUAA-GUAUU C|C|C-CCU- G-GGAAGUAC 1801 GCC-C---(C CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferr10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. N-Fe2. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. N-Fe2. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75266|g496524 isolate_name= N-Fe2 BASE COUNT 323 a 306 c 437 g 254 t 3056 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G U-CUUU---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----AGGG-- AAG---A-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --GG-GAC-- GA-A-AA-GG --CGG-GUC( C----UAAUA -----C---) GAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-ACC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAUC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUAG A-AAC-CGGC G-CACUA-GA GUA-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACN-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|C-CCU- G-GGAAGUAC 1801 GCC-C---(C CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79432 (bases 1 to 312) BASE COUNT 228 a 212 c 315 g 182 t 3439 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-..AAA-- ---GC--GG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCNNG--C- G--GCU---- 661 ----AANG-- AGG---A-|C CUNCG----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-NAA-GG) -C-CUACN-W A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU K-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CN(--KK-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --CGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCN-N ACUCC-GG.( .......... .........) .......... |......... 1201 ..A-CGU-NA UC-GGAAUCA -CU--GGC|U NAAG-GGUG- CGU-AG--GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU K-AAA-UC-C CC-NGG-C(- UC-A)A-CCU -GG-N-NAU- 1321 -GGCG-GUGG A-AAC-CGGC G-GACUA-GA GUA-----UG G-GA-GAGGG UNG-U|GGNA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCS-- --NACCUG-- ---------- ---------- ---------G 1501 CCN--NA-UA CUGACG-CUG AG-G------ -------CA- C-KAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-SU--D 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(SAC-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUAA-GURUU C|C|G-CGU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......G-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-N AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CD-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-N DUUAU-G-UC -KA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUM- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- R)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CRGUA- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. N-Fe4. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. N-Fe4. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE populations found in natural and commercial bioleaching environments Cultural and phylogenetic analysis of mixed microbial JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75267|g496523 isolate_name= N-Fe4 BASE COUNT 324 a 304 c 448 g 255 t 3045 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G U-CUUU---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----AGGG-- AGG---A-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --CGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUGG A-AAC-CGGC G-GACUA-GN GUA-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(CAC-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. F221. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. F221. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79409 (bases 1 to 340) isolate_name= F221 BASE COUNT 217 a 212 c 296 g 174 t 3477 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... .GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CYACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGNNAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --CGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-AUC-C-AA G-WA--GAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ....CAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-AGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -GGCG-GUGG A-AAC-CGGC G-CACUA-GA GUN-----UG G-GA-GAGGG UGG-U|GGNA 1381 UU-CCAGGU- GUA-GCG(-G USAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCG-- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-SAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--M 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUM -CUSAG-UGU 1741 CG--UA---- --NS-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- N-GNAAGUAC 1801 GGC-C---(G C..)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .CG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-Y AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CW-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C YUUAU-G-UC -YA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79406 (bases 1 to 312) ATCC 23270 (T) = NCIMB 8455 BASE COUNT 182 a 190 c 273 g 161 t 3570 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....G----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( KU-AAA-GG) -C-CKACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGD-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCRAU-- GG-GG-(GBD A)-CCC-UGA CGAA|-GCAA UGCC-GB-GU 961 G-G-AU-G-A A-GAA--G-G CC(--KU-CG --)GG-UUGU AAA--GUCC| KUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --UGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCD-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......AU- 1321 -GGCG-GUGG A-AAC-CGGU G-UMCUM-GA GUM-----UG G-KW-GAGGG UDG-U|GGWA 1381 UU-CCAGGU- GUM-GCG(-G UKAAA)-UGC -GU-MGAG-A UC-UGGAGG- AACA-UCMG- 1441 -U-G-GC(-G AA-G)GCCG- --UACCUG-- ---------- ---------- ---------G 1501 CCD--DA-UM CUGACG-CUG AG-G------ -------CM- C-DAAA-GC- GU-GGG-GA- 1561 GC-MAA-CM- -GG(AUYM-G AUMC)-CCU- ----RGUA-G UC----CAC- G-CC-NU--A 1621 AAC-G-AUGA A--UM-CU-- -------M|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(CDA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUMA-GUAUU C|C|G-CCU- D-GGAAGUMC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......G-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-N AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCD|G 2701 G-HD-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -R-AGUC-CU CRU-G-GC-C NUUAU-G-UC -CA--GGDC- 2821 U-ACR-CR-C GUG--CUACR AUGGC-G-CG -UA--CRGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCRAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -RGC-AU)-G CCG-CGGUR- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferr12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. N-Fe3. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. N-Fe3. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75268|g496526 isolate_name= N-Fe3 BASE COUNT 323 a 304 c 445 g 254 t 3050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G U-CUUU---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----AGAG-- AGG---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --UGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUGG A-AAC-CGGU G-UACUA-GA GUA-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79403 (bases 1 to 412) ATCC 19859 = NCIMB 9490 BASE COUNT 256 a 262 c 358 g 206 t 3294 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .A--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCWCG--C- G--CUA---- 661 ----G-AG-- AGG---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 H-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UHC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCWAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--HH-CG --)GG-UUGU AAA--GUCC| UWUC-GU-NG 1021 --AG-GAC-- GA-A-AA-GG --UGG-GUU( C----UAAUA -----C---) AAUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-N-UG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -GGCG-GUGG A-AAC-CGGU G-UACUA-GA GUA-----UG K-GA-UAGGG UN--U|GGMA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--M 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(CCU-GC)- ---------- ---------- ---------- -------GUA -CYGAG-UGU 1741 CG--UW---- --NS-(UAA- ---C)G-CG- AUAA-GUNUU C|C|G-CCU- G-GGCNGU-C 1801 GGC-C---(N UCC)---N-G G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCU-A-CC -GG--C-AUG ACA-UG|--- ---------U ---CCGG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ----C----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CW-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C HUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCG-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thioo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thiooxidans str. 3/TA ATCC 19377 (T). ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thiooxidans str. 3/TA ATCC 19377 (T). ORGANISM Thiobacillus thiooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19377 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79398 (bases 1 to 406) ATCC 19377 (T) = NCIMB 8343 isolate_name= 3/TA BASE COUNT 244 a 247 c 337 g 207 t 3341 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......GG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUG---- 661 ----AA-G-- AGG---A-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-A-AU-N-N A-GAA--G-G CC(--NU-CG --)GG-UUGU AAA--GWWC| UUUC-GU-GG 1021 --AG-GAN-- GA-A-AA-GG --UGG-GUG( C----UNANN -----N---) CGCC-UG-CU 1081 ---------- -------G-U U-GA-NNUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |..CUG-C-- 1201 AAG-CGUUCA UC-G--AUCA -CU--GGC|G UAAA-GGGU- GCG-UA--GC -G|-GU-GC- 1261 A-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-N-AUG- 1321 -GCGG-UG-G A-AAC-CGGU G-UACUA-GA GUA-----UN K-GA-UAGGG UNG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCG-- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-NU-UUG -GU-GC---- ---------- 1681 -(CAA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 HG--UA---- --NC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(N CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 A-CCUUA-CC UGG--C-NUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UNC-A--(- UAUA-)-UGC -G-GNNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----WA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CW-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCANC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-MY)-G CCG-CGGUG- AAUAC-GUN- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thioo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thiooxidans str. B-53. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thiooxidans str. B-53. ORGANISM Thiobacillus thiooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75269|g496525 Former RDP Sids: Thb.ferr11 isolate_name= B-53 BASE COUNT 325 a 301 c 448 g 255 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G U-CUUU---G -AGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUG---- 661 ----GAAG-- AGG---A-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GU-GG 1021 --AG-GAC-- GA-A-AA-GG --UGG-GUG( C----UAAUA -----A---) CGCC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-AUC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-GC- 1261 A-UU-AGG|U CUG---UCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUGG A-AAC-CGGU G-UACUA-GA GUA-----UG G-GA-GAGGG UGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(CAA-GC)- ---------- ---------- ---------- -------GUA -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thioo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thiooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thiooxidans. ORGANISM Thiobacillus thiooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79401 NB: DSM lists this as Thiobacillus sp.; prob. a strain of Thb.albertis BASE COUNT 305 a 290 c 418 g 231 t 3132 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..C--G AGU--GCGA- 361 -A-C--GG-U -AGU---AAA -GC-GUAGG- A-A--UCU-G C-UUU----A --GU--G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-GAG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 -G-------- -)-GG----- ---------- ----GAAA-- ---GCGGGG- -A--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CU----- 661 ----AAAG-- AGG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UC| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -MGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--NN-CG --)GG-UUGU AAA--GUCC| CNNC-NN-GG 1021 --GG-GAC-- GA-A-AA-GG --UGG-GUC( C----UNANA -----G---) GGUC-UG-CN 1081 ---------- -------N-U U-GA-CUA-- A-CCC-A--A G-UA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GNUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 G-UU-ACG|U CUG---CCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -GGCG-GUGG A-AAC-GGGC G-GACUA-GA GUG-----UG G-GA-GAGGG UGA-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-GC---- ---------- 1681 -(NNN-AC)- ---------- ---------- ---------- -------GUG -CUGAG-UGU 1741 NG--UA---- --NS-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-GC -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG--C-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C NUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GCC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- U......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. LM2. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. LM2. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79412 (bases 1 to 305) isolate_name= LM2 BASE COUNT 193 a 200 c 290 g 167 t 3526 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|C CUUCG----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-W A|-GGC-UA- CKA------- -----UC-GG 781 U-NG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- UAG-C|U-NC -NCUGG-G-A 841 (CUGA-GA-N GCG)--GCCN -NGW-C-UCC -(UACG)--G GAG-NC-NG- C-A---GU-G 901 GGG-AAUUKU U-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCNA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --GG-GAC-- GA-A-AA-GG --CGG-AUC( C----GAAUA -----C---) GGUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-A-C----A G-AA--GAAG ---------C 1141 -ACCGGCU-A ACU......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 .......G|U CUG---CCGU G-AAA-UC-C CC--GG-C(- UC-A)A-CCU -GG-N-AUG- 1321 -GCGG-UGG- A-AAC-GGCU N--ACUG-GA GNN-----UG G-GN-GAGGG UNA-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NCACCUG-- ---------- ---------- ---------G 1501 CCC--NA-UA CUGA-S-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NN--N 1621 AAC-G-AUGG A--UA-CU-- -------G|G -AU-GU-UUG -GC-GC---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------GUG -CUGAG-UGU 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUAA-GUAUC C|S|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |UG-U(-CGU G)-AGAUG-U 2221 UG-G-(GUUA -AG)-UCCGC AA-------- CGAG-C--GC NACCC-UU-G |-UU--CCU- 2281 AG--UUGC-N AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACW-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79415 (bases 1 to 310) BASE COUNT 213 a 205 c 260 g 171 t 3527 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|....CU G--AUUA-G- CUA-G---UU 721 GG-UA--G-( GU-AAA-GG) -C-CUACU-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-C-- YAG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--R GAG-NC-AG- C-A---GU-C 901 SGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UAA CGAA|-GCMA URCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CN(--NW-CG --)GG-UUGU AAA--GUCC| WUUC-GU-GG 1021 --GN-GAC-- GA-A-AA-GG --CGR-RUC( C----UAAUA -----C---) GAUC-UG-CU 1081 ---------- -------G-U U-GA-CGUG- A-ACC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......CG|U UAG---GUCU G-CUC-AA-U CC-UNG-C(- UC-A)A-CCU -GG-N-AUG- 1321 -GCGG-UAGA A-ACC-GGCG C-ACUNG-AG UNU-----GG N-NG-AGGNU NGU-N|G-NA 1381 UU-CCAGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCG-- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--NA-UA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-GU-UUG -GU-AC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GUA -CUNAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|R-CCU- A-GGAAGUAC 1801 GGC-C---(N CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |U--U(-C-U -)-A-AUG-U 2221 UG-G-(GUU- -AG)-UCCNN AA-------- CGAG-C--GC MACCC-UU-G |-UC--CUU- 2281 AG--UUGC-U AG-CG----- ---------- ---------- ---G(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-CN-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C NUUAU-G-UC -CA--GGDC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUA- AAUAC-GUU- CCC-AGG-CC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.thioo5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus thiooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus thiooxidans. ORGANISM Thiobacillus thiooxidans. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE The biotechnological importance of molecular diversity studies for metal bioleaching JOURNAL (in) Priest,F.G., Ramos-Cormenzana,A. and Tindall,B.J. (Eds. ); BACTERIAL DIVERSITY AND SYSTEMATICS (FEBS SYMPOSIUM NO. 75): 259-273; Plenum Press, New York (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72851|g899426 BASE COUNT 314 a 313 c 462 g 249 t 3038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--CCU-A U-CCUU---U -UGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--U- G--CUG---- 661 ----AAGG-- AGG---G-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --GG-GAC-- GA-A-AA-GG --CGG-AUC( C----GAAUA -----C---) GGUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-ACC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GG- 1261 G-UU-ACG|U CUG---CCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUGG A-AAC-GGGC U-GACUG-GA GUA-----UG G-GA-GAGGG UGA-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UA-CU-- -------G|G -AU-GU-UUG -GC-GC---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------GUG -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----CCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.caldus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus caldus str. KU DSM 8584 (T). ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus caldus str. KU DSM 8584 (T). ORGANISM Thiobacillus caldus. REFERENCE 1 AUTHORS Hallberg,K.B. and Lindstrom,E.B. TITLE Characterization of Thiobacillus caldus, sp. nov., a moderately thermophilic acidophile JOURNAL Microbiology 140, 3451-3456 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8584 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29975 isolate_name= KU BASE COUNT 340 a 346 c 500 g 274 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--CCU-A U-CCUU---U -UGUG-G-GG 421 -GAC-AA-CC C--------- ------AG-- G(-GAAA-)C -UUGG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--U- G--CUG---- 661 ----AAGG-- AGG---G-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU U-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUCC| UUUC-GU-GG 1021 --GG-GAC-- GA-A-AA-GG --CGG-AUC( C----GAAUA -----C---) GGUC-UG-CU 1081 ---------- -------A-U U-GA-CGUG- A-ACC-C-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAAC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GG- 1261 G-UU-ACG|U CUG---CCGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-GUGG A-AAC-GGGC U-GACUG-GA GUA-----UG G-GA-GAGGG UGA-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACG-CUG GG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UA-CU-- -------G|G -AU-GU-UUG -GC-GC---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------GUG -CUGAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----CCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAGA-C CCCAG-AAAG -CG-C-GUC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- UG-GU-ACCA -GAA-G-CCG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-AC-GA-CC A-CGGU-AUA GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.tepida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus tepidarius. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus tepidarius. ORGANISM Thiobacillus tepidarius. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79425 (bases 1 to 311) BASE COUNT 234 a 244 c 315 g 188 t 3395 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUG---- 661 ----GCCG-- MGG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 Y-AG-C-UC| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCY -YGM-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUCU U-CGCWAU-- GG-GG-(GCA A)-CCC-UGA CGAA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-NN-CG 1021 --GG-GAC-- GA-A-AA-GG --UNC-GGG( C----GAACA -----G---) UCCG-NN-CU 1081 ---------- -------G-U Y-GA-CGUS- A-ACC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A -CUC--GU-( CCA---CA-C Y-YNGUA-A) U-A-C-GAYU |------C-- 1201 UA--CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- CGU-AGG-CG -G|-UC-AU- 1261 --CU-CAG|U CUG---CUGU G-AAA-GC-C CU--GG-C(- UC-A)A-CCU -GG-G-YAU- 1321 -GGCA-GUGG A-UAC-UGGA U-NGCUY-GA GUC-----UG G-GA-GAGGG UC--U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAA- 1441 -U-G-GC(-N AA-G)GCAG- -CGACCUU-- ---------- ---------- ---------G 1501 CCC--NA-GA CUGACG-CUN AA-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GC-GU-GUG -GC-GA---- ---------- 1681 -(GUU-UA)- ---------- ---------- ---------- -------ANC -NUCCG-UGC 1741 CB--CA---- --SS-(UAA- ---C)G-CA- UUAA-GUAUC C|Y|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)--CCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GN-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GH-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGA-U-G-C- CA-ACU-C(G 2881 -CNA)GAGG- ---------- GA-GCCGA-C CCCAG-AAAG -UG-C-GCC- GUAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUM- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsc.oceanu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosococcus oceanus str. C-27. ACCESSION No information KEYWORDS No information. SOURCE Nitrosococcus oceanus str. C-27. ORGANISM Nitrosococcus oceanus. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96398 isolate_name= C-27 NB: GUCAC at 1405r is tandemly repeated BASE COUNT 317 a 310 c 457 g 263 t 3029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..C--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G G-CCUC---U -AGAG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUCG--C- G--CUG---- 661 ----GGGG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GN --GAU-GUG( U----GAAUA -----G---) CACA-UC-GU 1081 ---------- -------G-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U UGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-CUUG A-UAC-UGCC U-GGCAU-CA CUA-----UG G-AU-CAGGG AGG-C|GGAA 1381 UU-UCCGGU- GUA-GCG(-G USAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACC--AC-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AC-GU-UGG -GA-GG---- ---------- 1681 -(GAU-AG)- ---------- ---------- ---------- -------CCU -UUCAG-UGU 1741 UG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---CCGG--- -AA----CUU 1981 -UGC-U--(- GAGA-)-GGC -G-AAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----RG---| CCG-GGAGGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-W---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UN--UCU- 2281 AG--UUGC-C AG-CGGG--- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-N- U-AGA-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- CA-AGC-A(G 2881 CUGA)UGCG- ---------- GA-GCUAA-U CUCAG-AAA- -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCM -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGN-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACGUCA CACCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UGG 3121 G-UAG-U-UU .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nsc.ocean2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nitrosococcus oceanus str. C-107 (T). ACCESSION No information KEYWORDS No information. SOURCE Nitrosococcus oceanus str. C-107 (T). ORGANISM Nitrosococcus oceanus. REFERENCE 1 AUTHORS Head,I.M., Hiorns,W.D., Embley,T.M., McCarthy,A.J. and Saunders,J.R. TITLE The phylogeny of autotrophic ammonia-oxidizing bacteria as determined by 16S ribosomal RNA gene sequences JOURNAL J. Gen. Microbiol. 139, 1147-1153 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96395 isolate_name= C-107 (T) BASE COUNT 331 a 315 c 469 g 277 t 2984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..C--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G G-CCUC---U -AGAG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAN-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUCG--C- G--CUG---- 661 ----GGGG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GAGAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --GAU-GUG( U----GAAUA -----G---) CACA-UC-GU 1081 ---------- -------G-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GKAG |-GGUG-C-- 1201 GAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U UGG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-CUUG A-UAC-UGCC U-GGCUA-GA GUA-----UG G-AU-GAGGG AGG-C|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACC--AC-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AC-GU-UGG -GA-GG---- ---------- 1681 -(GAU-AG)- ---------- ---------- ---------- -------CCU -UUCAG-UGU 1741 UG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---CCGG--- -AA----CUU 1981 -UGC-U--(- GAGA-)-GGC -G-AAGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-CC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-NG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- CA-AGC-A(G 2881 -CGA)UGCG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CU A-CGGU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Beg.alba 4376 bp RNA RNA 02-JUL-1998 DEFINITION Beggiatoa alba str. B15LD DSM 1416. ACCESSION No information KEYWORDS No information. SOURCE Beggiatoa alba str. B15LD DSM 1416. ORGANISM Beggiatoa alba. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kver,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 1416 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40994|g886138 isolate_name= B15LD BASE COUNT 392 a 315 c 436 g 302 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-N -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GUUAAG- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCN|-NC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAC-AA-CC U--------- ------AG-- G(-GAAA-)C -UUAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CCU-(-- --------AA 541 GG-------- -)-GGG---- ---------- ----GAAA-- ---GUAGGG- GA--NC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUA--C- G--CUA---- 661 ----ACAG-- AUG---A-|G CCCAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUA-GG-UU 1021 --GG-GAA-- GA-A-AA-AG --CAC-AUG( C----UAAUA -----C---) CAUG-UG-AA 1081 ---------- -------A-U U-GA-CGUU- A-CCA-A-CG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -AGCA-UUUG A-UAC-UGGU U-GACUA-GA GUG-----UA A-UA-GAGGG UAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 AUU--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AU-GU-UGG -GA-GA---- ---------- 1681 -(GAC-UG)- ---------- ---------- ---------- -------UCU -CUUAC-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- CUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAAA-)-UAU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CG----- ---------- ---------- ---U(---AA ---AGG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-U-AUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AC)UG CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GU-ACCN -GNN-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......G-C G-CU-UA-CC A-CGGU-AUG GUU-CA-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Beg.sp1401 4376 bp RNA RNA 02-JUL-1998 DEFINITION Beggiatoa sp. str. 1401-13. ACCESSION No information KEYWORDS No information. SOURCE Beggiatoa sp. str. 1401-13. ORGANISM Beggiatoa sp. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kuever,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40997|g886137 isolate_name= 1401-13 BASE COUNT 387 a 314 c 445 g 313 t 2917 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUAGG- A-A--UCU-G C-CUUG---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| --CUCU--C- G--CUA---- 661 ----UAAG-- AUG---A-|G CCUAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUN-NG-UU 1021 --GG-GAA-- GN-N-NA-GC --UGU-GUG( U----UAAUA -----C---) CACA-UA-GU 1081 ---------- -------G-U U-GA-CGUU- A-CCA-A-CN N-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-UA- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UC-GAG-C(- UC-A)A-CUU -GA-G-AAU- 1321 -UGCA-UUUG A-AAC-UGCU U-AGCUA-GA GUA-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AU-GU-UGG -GG-GA---- ---------- 1681 -(GUU-AA)G ---------- ---------- ---------- -------UCC -CUUAG-UAU 1741 CG--CN---- --NN-(NAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGA--- -AA----UCU 1981 -NUG-A--(- GAGA-)-UUA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GU-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGAGG-A-C G-CU-UA-CC A-CGGU-AUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thpl.ingri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thioploca ingrica.. ACCESSION No information KEYWORDS No information. SOURCE Thioploca ingrica. ORGANISM Thioploca ingrica. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kuever,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40998|g886408 geog_source= Randersfjord, Denmark BASE COUNT 401 a 315 c 438 g 327 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC--- (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUAGG- A-A--UCU-G C-CUUG---U -AGUG-G-GG 421 -AAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- -U-CUU---- ---UUU-(-- --------UA 541 A--------- -)-AGA---- -------A-A GG--GAAA-- ---GAGGG-- CC--UC---- 601 --(------- ---UUCAU-- ---)------ -----GA--| AUCUCU--C- G--CUA---- 661 ----CUAG-- AUG---A-|G CCUAU----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-NNNNAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-CG --)GG-UUGU AAA--GCAC| UUUN-AA-UU 1021 --GG-GAA-- GA-A-AA-GU --UCU-UGG( C----UAAUA -----A---) UCAA-GU-AC 1081 ---------- -------C-U U-GA-CGUU- A-CCA-A-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CA-AGG-C(- UU-A)A-CCU -UG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCU U-AGCUA-GA GUA-----CA G-UA-AAGGG AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUA-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AC-GU-UGG -AA-GGG--- ---------- 1681 -(-UA-UA)- ---------- ---------- -C-------- -------CUU -UUAGU-GUC 1741 GC--NN---- ---N-(NAA- ---C)G-CG- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CU-UUG ACA-UC|--- ---------C ---UUGG--- -AA----CCU 1981 -UGC-A--(- GAAA-)-UGU -G-AGGC--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAGAG GGU-C-G-C- CA-AAC-U(G 2881 -UAA)AGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CU-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CCU--- ---------- ---------- -----(---- -GAUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-C G-CU-UA-CC A-CGGU-AUG GUU-CA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thpl.arauc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thioploca araucae.. ACCESSION No information KEYWORDS No information. SOURCE Thioploca araucae. ORGANISM Thioploca araucae. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kuever,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L41043|g886410 geog_source= 30 m deep,the Bay of Concepcion, Chile biol_source= marine sediment BASE COUNT 179 a 122 c 188 g 131 t 3756 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GG-GAA-- GA-A-AA-GC --UUU-AGG( A----UAAUA -----C---) UCUA-AA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 A-GU-CAG|U CGG---AUGU G-AAA-GC-C CA-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUCG A-UAC-UGCU U-AGCUA-GA GUA-----CA G-UA-GAGGG AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -AU-GU-UGG -GG-GA---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------UCC -CUUAG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thpl.chile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thioploca chileae.. ACCESSION No information KEYWORDS No information. SOURCE Thioploca chileae. ORGANISM Thioploca chileae. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kuever,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40999|g886409 geog_source= continental shelf 100m deep, Bay of Concepcion, Chile BASE COUNT 159 a 107 c 160 g 116 t 3834 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... C-A---GU-A 901 GGG-NNNNUU G-NACAAU-- GG-GC-(UAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GG-GAA-- GA-A-AA-GC --UAN-NAG( U----UAAUA -----C---) CUGC-UA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUNN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-NGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- NCG-UAG-GC -G|-G..... 1261 .....AGU|N AAA----UGU G-AAA-GC-C CN-AGG-C(- UU-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGCG U-AGCUA-NA GUA-----CA G-GA-GAGGG AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-N-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACN--NA-UA CUGACG-CUG AU-G------ -------UN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNN- N-CC-CU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -AU-GU-UGG -GG-GA---- ---------- 1681 -(AAU-UA)A ---------- ---------- ---------- -------UCC -CUUAG-UNU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUANN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-NGAAU UG-ACGGG.. .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chr.vinosm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromatium vinosum. ACCESSION No information KEYWORDS No information. SOURCE Chromatium vinosum. ORGANISM Chromatium vinosum. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26629 BASE COUNT 353 a 364 c 489 g 277 t 2893 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGUA---- ---|-----G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-AUGGG- A-A--UCU-G C-CUGG---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--UUG---- 661 ----CCAG-- AUG---A-|G CCCAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAC--G-G CC(--UG-CG --)GG-UUGU AAA--GCCC| UUUC-GG-UG 1021 --GG-AAA-- GA-A-AA-GC --ACG-GGG( C----UAAUA -----C---) CUCC-GU-GU 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-AC- 1261 G-GU-CAG|U CUG---CUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUGG A-UAC-UGCC G-CGCUA-GA GUG-----UG A-AA-GAGGG GGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 UUC--AA-CA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-CU-- -------A|G -CC-GU-UUG -GU-CC---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------GGG -CUGAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG CGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CGCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUC-AA-UG- ACN-NGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chr.tepidm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromatium tepidum str. MC ATCC 43061. ACCESSION No information KEYWORDS No information. SOURCE Chromatium tepidum str. MC ATCC 43061. ORGANISM Chromatium tepidum. REFERENCE 1 AUTHORS Wahlund,T.M., Woese,C.R., Castenholz,R.W. and Madigan,M.T. TITLE A thermophilic green sulfer bacterium from New Zealand Hot Springs, Chlorobium tepidum sp. nov. JOURNAL Arch. Microbiol. 156, 81-90 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43061 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59150 isolate_name= MC BASE COUNT 332 a 327 c 505 g 255 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNCUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GN (--UU----- ---------- ---------- 241 --------CG -)GC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGUA---- ---|-----G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGAG- A-A--UCU-G C-CUGG---C -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -NCGG-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----UAAA-- ---GGGGGC- ----U----- 601 --(------- ---GAGA--- ---)------ ------G--| -GCUCU--N- G--UUG---- 661 ----CCAG-- AUG---A-|G CUCAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAN ----GG-C-- NAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCGA UGCC-GC-GU 961 G-G-GU-G-A A-GAC--G-G CC(--UG-CG --)GG-UUGU AAA--GCCN| NUUC-GA-UG 1021 --GG-GAA-- GA-A-AG-GC --CGG-CGG( U----GAAGA -----G---) CUGC-GG-GU 1081 ---------- -------G-U U-GA-CGUU- A-CCC-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -N|-GU-UG- 1261 A-GU-AAG|U CUG---CCGU G-AAA-GC-C CU-GGG-C(- UU-N)A-CCN -AG-G-AAU- 1321 -GGCG-GUGG A-GAC-UGCU G-AGCUA-GA GUG-----UG A-GA-GNGGG GGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CGAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 UUC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGU C--GA-CU-- -------A|G -CC-GU-GUA -GU-CC---- ---------- 1681 -(GUU-UU)A ---------- ---------- ---------- -------GGG -CNGUG-NGG 1741 NN--NN---- --GC-(UAA- ---C)G-CG- CUAA-GUCGA C|N|G-NNU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---GUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CCA-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-N AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG CGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CGCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-CU)-G CCG-CGGUG- AAUAC-GNN- CCN-NGG-CC NUGNA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-UGGG A--GU-GGU- GU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-NN -AA-CC---- ---------- ---------- -----(---- -GGNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-NN-GC N-CGGN-GNG GNN-AA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.T5811 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone T5811.. ACCESSION No information KEYWORDS No information. SOURCE clone T5811. ORGANISM clone T5811. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89364 BASE COUNT 62 a 60 c 82 g 49 t 4123 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... .....CA-|G CUCA------ -UA|----UC NUACUUA-G- CUA-G---UU 721 UC-CA----( -U-AAA--G) -C-CCACC-A G|-U-C-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GAGU-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AG-CC --UCG-GGG( C----GAAUA -----C---) CCUC-GG-GG 1081 ---------- -------G-U U-GA-GGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Thd2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Thd2. str. Thd2. ACCESSION No information KEYWORDS No information. SOURCE str. Thd2. str. Thd2. ORGANISM str. Thd2. REFERENCE 1 AUTHORS Ehrenreich,A. and Widdel,F. TITLE Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism JOURNAL Appl. Environ. Microbiol. 60, 4517-4526 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78718|g535246 isolate_name= Thd2 BASE COUNT 346 a 336 c 478 g 276 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--------- -----CGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGUA---- ---|-----G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUGGG- A-A--UCU-G C-CUGG---C -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGGGGC- ----C----- 601 --(------- ---GCAA--- ---)------ ------G--| -GCUCU--C- G--CUG---- 661 ----CUAG-- AUG---A-|G CCCAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --AUG-UGG( U----UAAUA -----C---) CCGU-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCC-A-CA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-CUU 1261 G-AU-AAG|U CAG---CUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUUG A-UAC-UGUC U-GGCUC-GA GUC-----UG A-GA-GAGGG AGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 CUU--AA-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(AUU-UA)C ---------- ---------- ---------- -------GGG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCU-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAC-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG GUC-AA-UG- ACU--GGG.. 3301 .......... GUGA-AGUCG UAACA-AGGU A(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.BN3201 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. BN str. BN 3201. ACCESSION No information KEYWORDS No information. SOURCE str. BN str. BN 3201. ORGANISM str. BN. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93472 isolate_name= BN 3201 BASE COUNT 360 a 337 c 476 g 291 t 2912 others ORIGIN 1 .......... .......... .......... ........GA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGCAGGG-A -UGC-UU--A ACAC-AUGCA A-G-C-GAAC 121 G--------- -----CGAAA G--------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- -GGVUUCGGG UGAGUA---- ---|-----G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-G C-CCUG---U -AGUG-G-GG 421 -AAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGC- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| -GCUCU--C- G--CUG---- 661 ----CAGG-- AUG---A-|G CCCAC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAUUGG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-CUUG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG---A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|GGCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G GC(--UG-CG --)GG-UUGU AAA--GGAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AA-GC --CUG-GGG( U----UAAUA -----C---) CCCU-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-G-AG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-GA- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCU U-GACUU-GA GUA-----UG G-UA-GAGGG AGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -AU-CC---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- AUAA-GUCGA C|C|C-CCU- G-GGGAGUAC 1801 GGC-C---(C CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC ASC-CC-UUG ACA-CC|--- ---------C ---UKGG--- -AA----ACU 1981 -GUC-A--(- GAGA-)-UGA -C-AGGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG--C| CCA-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-- AG-CGC---- ---------- ---------- ---G(---GA ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAUUGGGC-C CUUAUUG-GG -CUUGGGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -CA--CAGAG GGU-C-G-C- GA-ACC-C(C 2881 -GAG)GUUG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AYC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGGSCC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UG-- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-AC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-G C-GU-UU-AC A-CGGU-GUG GUU-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Chr.gracil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromatium gracile str. BN 5210 DSM 203 (T). ACCESSION No information KEYWORDS No information. SOURCE Chromatium gracile str. BN 5210 DSM 203 (T). ORGANISM Chromatium gracile. REFERENCE 1 AUTHORS Imhoff,J.F. and Suling,J. TITLE The phylogenetic relationship among Ectothiorhodospiraceae: a reevaluation of their taxonomy on the basis of 16S rDNA analyses JOURNAL Arch. Microbiol. 165, 106-113 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 203 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93473 Former RDP Sids: str.DSM203 isolate_name= BN 5210 BASE COUNT 348 a 336 c 474 g 293 t 2925 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G G)V-MMU|-G 61 GCUCAG-NUU -GAAC-GC-- UGGC-GGC-A -UUC-CU--U ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GGAGUA---- ---|-----G AGUG-GCGG- 361 -A-CGGUG-U GAGU---AAU -GU-GUGGG- U-A--UCU-G C-CCUG---C -A-CG-G-GG 421 AGAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---GAC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAAA- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- A--CUG---- 661 ----CAGG-- AUG---A-|G CCCAC----- -AU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUAUU G-GACAAU-- GG-GC-(GAA A)-CGU-GAN UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A G-AAG--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-AA-GC --CUG-UGG( U----UAAUA -----C---) CCAU-GG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCCGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GA- 1261 G-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)C-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGCC U-GGCUA-GA GUU-----UG A-UA-GAGGG GGGGU|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 AUC--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-NUGU C--GA-CU-- -------A|G -CC-GU-NUN -GU-CC---- ---------- 1681 -(GUU-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --GU-(AAC- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGA-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-A- CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- AA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CUCAGAAAAB -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-AC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-UU-UA-CC A-CGGU-GUG AUC-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Inndle 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Dubilier,N., Giere,O., Distel,D.L. and Cavanaugh,C.M. TITLE Characterization of chemoautotrophic bacterial symbionts in a gutless marine worm (Oligochaeta, Annelida) by phylogenetic 16S rRNA sequence analysis and in situ hybridization JOURNAL Appl. Environ. Microbiol. 61, 2346-2350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U24110|g785065 endosymbiont_of= Inanidrilus leukodermatus, S-oxidizing BASE COUNT 356 a 343 c 486 g 293 t 2898 others ORIGIN 1 .......... .......... .......... .......... .UBDUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA G--------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------G CGAGUA---- ---|-----G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUCG---U -AGUG-G-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGAGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA--| USSUCC--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GG-GAA-- GA-A-AG-GC --CUU-GGG( U----UAAUA -----G---) CUCA-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-UCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-CG- 1261 A-AU-AAG|U CAG---AUGU G-AAA-GC-C CC-AGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGUC C-GGCUA-GA GUA-----UG G-UA-GAGGG GGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AACA-UCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GC-UC---- ---------- 1681 -(AUU-UG)A ---------- ---------- ---------- -------GAG -UUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -CA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCCAA-U CUCAG-AAAA -CC-G-CUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG GUC-AA-UG- ACU--GGG.. 3301 .......... GUGA-AGU.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lxussp 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Polz,M.F., Distel,D.L., Zarda,B., Amann,R., Felbeck,H., Ott ,J.A. and Cavanaugh,C.M. TITLE Phylogenetic analysis of a highly specific association between ectosymbiotic, sulfur-oxidizing bacteria and a marine nematode JOURNAL Appl. Environ. Microbiol. 60, 4461-4467 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14727|g551129 (bases 96 to 1401) Former RDP Sids: str.gamma symbiont_of= Laxus sp. found in Belize geog_source= Belize BASE COUNT 317 a 314 c 431 g 260 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -GC-GUGGG- A-A--UCU-G C-CUCG---G .......... 421 .......... .......... .........- .(......). ......G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGC- CUC-UG---- 601 --(------- ---CCUG--- ---)------ -----CA--| UGCUCC--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUG-G---UU 721 GG-UA-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GG-GAA-- GA-A-AU-GC --CUU-GGG( U----UAAUA -----C---) CCCA-GG-GC 1081 ---------- -------C-U U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-CG- 1261 G-AC-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGUC C-GACUA-GA GUA-----UG G-UA-GAGGG GGG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GC-UC---- ---------- 1681 -(AUU-UG)A ---------- ---------- ---------- -------GAG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUG 1981 -UCU-A--(- GAGA-)-UAG -A-CGGG--- UG-------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AG---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -CA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.3 SULFUR-OXIDIZING_SYMBIONTS. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.3 SULFUR-OXIDIZING_SYMBIONTS. ORGANISM 2.14.3.3 SULFUR-OXIDIZING_SYMBIONTS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A12s 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A12s.. ACCESSION No information KEYWORDS No information. SOURCE clone A12s. ORGANISM clone A12s. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91435|g987740 BASE COUNT 96 a 73 c 112 g 76 t 4019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAA |-AGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGA- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CGG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCA-UUCG A-UAC-UGGC A-GACUA-GA GUU-----UG G-GA-GGGGU AAG-C|GGAA 1381 UU-CCGUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCUG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------AU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCAG-U.. 1741 .......... .....(.AA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A11jk 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A11jk.. ACCESSION No information KEYWORDS No information. SOURCE clone A11jk. ORGANISM clone A11jk. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91434|g987739 BASE COUNT 93 a 75 c 116 g 75 t 4017 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAA |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGA- UCG-UAG-GA -G|-GU-UU- 1261 C-UU-AAG|U CGG---GUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCA-CUCG A-UAC-UGGC A-GGCUA-GA GUU-----UG G-GA-GGGGU AAG-C|GGAA 1381 UU-CCGUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCUG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------AU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A13k 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A13k.. ACCESSION No information KEYWORDS No information. SOURCE clone A13k. ORGANISM clone A13k. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91436|g987741 BASE COUNT 90 a 70 c 108 g 78 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAA |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGG- UCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CGG---GUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCA-CUCG A-UAC-UGGC A-GGCUA-GA GUU-----UG G-GA-GGGGU AAG-C|GGAA 1381 UU-CCGUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCUG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------AU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lucipe 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Durand,P., Gros,O., Frenkiel,L. and Prieur,D. TITLE Phylogentic characterization of sulfur-oxidizing bacterial endosymbionts in three Carribean Lucinidae by using 16S rDNA sequences analysis JOURNAL Mol. Marine Biol. Biotechnol. 5 in press (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84980|g1177521 symbiont_of= Lucina pectinata gill BASE COUNT 369 a 343 c 485 g 305 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- CCG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------UC-- G(-GAAA-)C -GGAA-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GC-GAA-- GA-A-AA-GC --CUG-GGG( C----UAAUA -----C---) CCUC-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-GCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-GGCUA-GA GUA-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AG-AC---- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- -------GUC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAC GGU-A-G-C- GA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCUAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Thya.f 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L. and Wood,A.P. TITLE Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis JOURNAL J. Bacteriol. 174, 6319-6320 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01575 geog_source= 15 m depth in Jennycliff Bay,UK biol_source= reducing sediment symbiont_of= Thyasira flexuosa gill BASE COUNT 382 a 328 c 466 g 321 t 2879 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- A(-GAAA-)U -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AG- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GU --UUG-AGG( U----UAAUA -----A---) CCUC-GA-AU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGCU G-AGCUA-GA GUG-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AG-AC---- ---------- 1681 -(UUU-AA)U ---------- ---------- ---------- -------GUU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGU-GG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-A-G-C- AA-CCC-C(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAAA...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Andoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25711|g457182 geog_source= Ferry Reach, Bermuda biol_source= intertidal mangrove swamp symbiont_of= Anodontia phillipiana (bivalve mollusc) gill BASE COUNT 368 a 331 c 462 g 302 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------CC-- G(-GAAA-)C -GGAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- -----AAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- A--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UG- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --UUA-GGG( A----UAAUA -----C---) CCCU-GA-GU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-CA- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGCU U-GGCUA-GA GUA-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GG-AC---- ---------- 1681 -(GUU-AA)G ---------- ---------- ---------- -------GUU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----GUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-C-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lucnae 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99448 geog_source= 500 m depth Santa Barbara Basin, CA biol_source= reducing sediment symbiont_of= Lucinoma aequizonata gill NB: IDENT:general Ectothiorhodospira area; member symL group BASE COUNT 344 a 288 c 417 g 283 t 3044 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-AC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GUAGAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----A---) CCUU-AG-GU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UANA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-ANC-UGCU U-GNCUA-GA GUA-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AA-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- -A-------- 1681 -(UUA-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CU-UUG AUA-UC|--- ---------C ---UGGA--- -AA----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCU- 2281 AG--UUGC-- AG-CGC---- ---------- ---------- ---A(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GN-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NC-C CGUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCN-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lucna3 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99450 (bases 1 to 377) geog_source= 100 m depth Santa Monica Bay, CA biol_source= sewage outfall symbiont_of= Lucinoma annulata NB: IDENT:general Ectothiorhodospira area; member symL group BASE COUNT 264 a 227 c 335 g 230 t 3320 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-..AAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUYG--C- G--CUA---- 661 ----UUNG-- AUG---A-|G CNUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-NAU-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|Y-NC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----A---) CCCU-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-KGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU U-GACUA-GA GUA-----UA G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- -A-------- 1681 -(UUA-UN)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 AG--CA---- --SS-(UAA- ---C)G-CG- AUAA-GUUGA C|N|G-CCU- N-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GW-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CN-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GYC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUS- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lucifl 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25707|g457281 geog_source= St. Joseph Bay, FL biol_source= intertidal eelgrass bed symbiont_of= Lucina floridana gill BASE COUNT 342 a 308 c 433 g 276 t 3017 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --CUA-GGG( U----UAAUA -----A---) CCCU-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 A-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU U-GGCUA-GA GUA-----UG G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-C-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- AA-GCAAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CCG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Codaco 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25712|g457197 geog_source= Whalebone Bay, Bermuda biol_source= intertidal eelgrass bed symbiont_of= Codakia costata gill BASE COUNT 374 a 338 c 471 g 308 t 2885 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --CUA-GGG( U----UAAUA -----A---) CUCU-GG-GU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 A-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU U-GGCUA-GA GUA-----UG G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGGA--- -AA----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGC-C-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- AA-GCAAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Lucina 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Durand,P. and Gros,O. TITLE Bacterial host specificity of Lucinaceae endosymbionts- interspecific variations in 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95229|g1166453 symbiont_of= Lucina nassula BASE COUNT 362 a 341 c 472 g 304 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----C---) CCCU-GA-GU 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCC U-GACUA-GA GUA-----UG G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- -A-------- 1681 -(UUA-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-ANNNCUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Coda.o 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99447 symbiont_of= Codakia orbicularis gill BASE COUNT 303 a 268 c 385 g 260 t 3160 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ......GG-U GAGU----AC -GC-GUAGG- U-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------AG-- G(-GAAA-)C -CUGA-G--C UAAUACC-G- 481 AU-ACG---- ---------- ---------- ---------- ---CCN-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCNGGG- NA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CNUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-RAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGR-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| KUUC-AA-UU 1021 --GG-GAA-- GA-A-AA-GC --UKG-AGG( U----UARUA -----C---) CCUN-GA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCU-U-UA G-AG--GAAG ---------C 1141 -ACCGGCU-G ACUCN-GUG( CNA--NNAGC NNCNGUA-A) U-A-C-GGAG |-GNUB-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-CC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCC G-CACUA-GA GUA-----UG G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- -A-------- 1681 -(UUA-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 NG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|N|G-CNU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-ANNACUC -AAN-GGAAU UG-NCGGG-N -N-C-CN--N 1861 C-A--CA-AG NNNNN--AGC A-U-GU-GGU -NUAAUU-CG -(AUNNNA-C G)--CGAAGA 1921 N-CCUUA-.C AGC-NC-UUN NNA-UC|--- ---------C ---UNGG--- -AA----NUU 1981 -ACU-A--(- GAGA-)-UAG -U-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- GG-------- ----AN---| UCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GNG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UA-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NC-C UUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CN-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GNU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Codao2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Durand,P., Gros,O., Frenkiel,L. and Prieur,D. TITLE Phylogentic characterization of sulfur-oxidizing bacterial ndosymbionts in three Carribean Lucinidae by using 16S rDNA sequences analysis JOURNAL Mol. Marine Biol. Biotechnol. 5 in press (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84979|g1177373 symbiont_of= Codakia orbicularis gill BASE COUNT 369 a 342 c 476 g 315 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- U-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAA-- GA-A-AA-GC --UUG-AGG( U----UAAUA -----C---) CCUC-GA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCC U-CACUA-GA GUA-----UG G-UA-GAGGG AAG-C|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AC-UC---- -A-------- 1681 -(UUA-UA)A ---------- ---------- ---------- -------GGG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UGGA--- -AA----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Riftpa 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99451 symbiont_of= Riftia pachyptila trophosome BASE COUNT 301 a 275 c 401 g 248 t 3151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---ANC -GC-GUAGG- A-A--UCU-G C-CCAG---U -AGUG-G-GN 421 -NAC-AN-CU M--------- ------GG-- A(-GAAA-)U -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGK---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUNG--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CNUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAA-- GA-A-AA-GC --CUG-AGG( A----UAAUA -----C---) CCUU-GG-GN 1081 ---------- -------N-U U-GA-CGUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCN-N ACUCC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GGAG |-GNUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-GGCUA-GA GUA-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UC-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-UN---- -A-------- 1681 -(UUA-UA)A ---------- ---------- ---------- -------GGG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|N|G-CCU- K-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... ..AA-GGAAU UN-ANGGG-G -N-C-CN--G 1861 C-N--CA-AG CGNNNN-AGC A-U-GU-GGU -NUAAUU-CG -(NNNNNA-C G)--CGAAGN 1921 A-CCUUA-CN AGC-CC-UUN ACA-UC|--- ---------C ---UCGG--- -NA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GG-K A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NC-C NUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE1 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26254|g498379 library_source= unidentified soil bacterium from soybean field BASE COUNT 65 a 67 c 83 g 57 t 4104 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-A |-UC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAC-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUC--AUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-UU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUU....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48226|g1146138 BASE COUNT 98 a 88 c 114 g 70 t 4006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -AC-GUAGG- A-A--UCU-U C-CUGA---C -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACA---- ---------- ---------- ---------- ---CCC-(-- --------UN 541 CG-------- -)-GGN---- ---------- ----GAAA-- ---NCAGGG- GA--CC---- 601 --(------- ---NUUAU-- ---)------ -----GN--| -CCUUG--C- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAU-GA) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AN-C-UG| -G-UCU--(G -AGA)-GGUC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-GG 1021 --GG-GAA-- GA-A-AA-GC --CAG-GUG( C----UAAUA -----U---) CAUC-AG-NU 1081 ---------- -------C-U U-GA-CGAU- A-CCC-C-AA G......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48227|g1146139 BASE COUNT 97 a 89 c 120 g 69 t 4001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -AC-GUAGG- A-A--UCU-U C-CUGN---C -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUUAU-- ---)------ -----GN--| -CCUUG--U- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-GG 1021 --GG-GAA-- GA-A-AA-GC --CCG-AUG( C----UAAUA -----C---) CAUC-AG-GU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-C--- --AA--G... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48222|g1146134 BASE COUNT 106 a 93 c 120 g 69 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -AC-GUAGG- A-A--UCU-G C-CUGA---C -AGUG-G-GG 421 -GAU-AA-CU U--------- ------AG-- G(-GAAA-)C -UUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CU---- 601 --(------- ---CUCGU-- ---)------ -----AG--| -CCUCG--C- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-A--GU 1021 ---G-GAG-- GA-A-GA-AA --UGC-CAA( AUAC-UAAUA -----C---) CAUU-UG-GU 1081 ---------- -------U-U U-GA-CGCU- A-CUC-C-AA G-AA--GAAG ---------C 1141 -ACC...... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48225|g1146137 BASE COUNT 103 a 88 c 122 g 74 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -GC-GUAGG- A-A--UCU-G C-CUGA---C -AGUG-G-GG 421 -GAU-AA-CU U--------- ------AG-- G(-GAAA-)C -UUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--CU---- 601 --(------- ---CUUGU-- ---)------ -----AG--| -CCUCA--C- G--CUG---- 661 ----AUAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-GG-GG 1021 --GG-GAA-- GA-A-AA-GU --UAG-CUG( C----UAAUA -----U---) CAGC-UA-AU 1081 ---------- -------C-U U-GA-CGUU- A-CUC-C-AA U-AA--GAAG ---------C 1141 -ACC...... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48223|g1146135 BASE COUNT 102 a 90 c 121 g 72 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -GC-GUAGG- A-A--UCU-G C-CUGA---C -AGUG-G-GG 421 -GAU-AA-CU U--------- ------AG-- G(-GAAA-)C -UUAA-G--C UAAUNCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CU---- 601 --(------- ---CUUGU-- ---)------ -----AG--| -CCUCG--C- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AN-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-GG-GG 1021 --GG-GAA-- GA-A-AA-GU --UAG-CUG( C----UAAUA -----U---) CAGC-UA-AU 1081 ---------- -------C-U U-GA-CGUU- A-CUC-C-AA U-AA--GAAG ---------C 1141 -ACC...... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxalif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42543|g1146133 BASE COUNT 386 a 332 c 463 g 298 t 2897 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA U-GUC-GAAC 121 G--CG-AAA- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CUUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-UA--G AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGA---C -AGUG-G-GG 421 -GAU-AA-CU U--------- ------AG-- G(-GAAA-)C -UUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CU---- 601 --(------- ---CUUGU-- ---)------ -----AG--| -CCUCG--C- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-GG-GG 1021 --GG-GAA-- GA-A-AA-GU --UAG-CUG( C----UAAUA -----U---) CAGC-UA-AU 1081 ---------- -------C-U U-GA-CGUU- A-CUC-C-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( UCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGN- AUG-UAG-GC -G|-GN-UU- 1261 N-AU-AAG|U CGG---UUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-AUCG A-UGC-UGUC A-AGCUA-GA GUA-----CG A-GA-GAGGG GGG-U|AGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAN-A UC-AGGAGG- AAUA-CCAG- 1441 -U-G-NC(-G AA-G)GCGN- -CCCCCUG-- ---------- ---------- ---------G 1501 AUC--GA-UA CUGACN-CUG AG-G------ -------UA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGU U--GA-CU-- -------A|G -CC-GU-UAG -AU-UC---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------GAA -UCUAG-UGG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUCAA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AC CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U C-UAGUA--- -AA----CCU 1981 -UUA-A--(- GAGA-)-UUA -A-AGGG--- UC-------- ---GU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- GA-------- ----GA...| .......... |...C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C UUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- CA-ACC-C(G 2881 -CAA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CUN-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ama.oxali4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Achromatium oxaliferum.. ACCESSION No information KEYWORDS No information. SOURCE Achromatium oxaliferum. ORGANISM Achromatium oxaliferum. REFERENCE 1 AUTHORS Head,I.M., Gray,N.D., Pickup,R.W., Clarke,K.D. and Jones,J.G . TITLE The Phylogenetic position and ultrastructure of the non-culturable bacterium Achromatium oxaliferum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L48224|g1146136 BASE COUNT 102 a 90 c 122 g 72 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -GC-GUAGG- A-A--UCU-N C-CUGA---C -AGUG-G-GG 421 -GAU-AA-CU U--------- ------AG-- G(-GAAA-)C -UUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CU---- 601 --(------- ---CUUGU-- ---)------ -----AG--| -CCUCG--C- G--CUG---- 661 ----ACAG-- AUG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-GG-GG 1021 --GG-GAA-- GA-A-AA-GU --UAG-CUG( C----UAAUA -----U---) CAGC-UA-AU 1081 ---------- -------C-U U-GA-CGUU- A-CUC-C-AA U-AA--GAAG ---------C 1141 -ACC...... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Solmve 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Eisen,J.A., Smith,S.W. and Cavanaugh,C.M. TITLE Phylogenetic relationships of chemoautotrophic bacterial symbionts of Solemya velum say (Mollusca: Bivalvia) determined by 16S rRNA gene sequence analysis JOURNAL J. Bacteriol. 174, 3416-3421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M90415 symbiont_of= Solemya velum BASE COUNT 376 a 324 c 458 g 301 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CG-AA-A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AGU|-AG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-AAG-- GA-A-AA-GC --CUA-AAG( U----UAAUA -----A---) CUUU-GG-GU 1081 ---------- -------C-U U-GA-CGUA- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -U|-GU-UA- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGCC U-GGCUA-GA AUC-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCACGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA UUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-UC---- ---------- 1681 -(UUU-UA)U ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----CUU 1981 -GUC-A--(- GAAA-)-UGA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- AA-ACC-N(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-A-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Solmre 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25709|g457377 geog_source= 150 m depth in Santa Monica Bay,CA biol_source= sewage outfall symbiont_of= Solemya reidi gill BASE COUNT 351 a 321 c 450 g 285 t 2969 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CAUA---U -AGUG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GGC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GC--C- G--CUA---- 661 ----UUUG-- AUG---A-|G CUCAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-AG 1021 --GG-GAG-- G--------- ---------( -----AUAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CCC-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UC- 1261 A-AU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUCA A-AAC-URUU G-GGCUA-GA GUU-----UR G-GA-GAGGA GAG-C|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-AG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CUU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----CUU 1981 -GUU-A--(- GAGA-)-UAA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- CA-ACC-U(G 2881 -CGA)AGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCYGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAN-N-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C N-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Solm.r 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Cary,C.S., Warren,W. and Giovannoni,S.J. TITLE A transovarial mechanism of endosymbiont transmission in the protobranch bivalve Solemya reidi JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L07864 symbiont_of= Solemya reidi NB: IDENT:general Ectothiorhodospira area; member symL group BASE COUNT 299 a 269 c 393 g 239 t 3176 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CAUA---U -AGUG-G-GG 421 -GAC-AA-CU ---------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GGC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GC--C- G--CUA---- 661 ----UUUG-- AUG---A-|G CUCAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-AG 1021 --GG-GAG-- G--------- ---------( -----AUAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CCC-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 .......... .......... ........|. ......AGC- GCG-UAG-GC -G|-GU-UC- 1261 A-AU-AAG|U UGG---AUGU G-AAA-CC-C C--GGG-G(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUCA A-AAC-UGUU G-GGCUA-GA GUU-----UG G-GA-GAGGA GAG-C|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UCG---CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-AG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CUU -CUUAG-UGG 1741 CG--C----- ---C-(U--- ----)G---- --AA-GU-GA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----CUU 1981 -GUU-A--(- GAGA-)-UAA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-G CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- CA-ACC-U(G 2881 -CGA)AGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAG...... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg47 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10949 library_source= marine snow associated BASE COUNT 314 a 281 c 401 g 254 t 3126 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .A--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--N- G--CUG---- 661 ----UUGG-- AGG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UNACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-GU-UA 1021 --GG-GAA-- GG-A-AG-GU --GCG-AGG( U----UCAUA -----A---) CCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-CCU-A-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GAG-UAG-GC -G|-GC-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCC A-AACUA-GA GGU------A G-UA-GAGGG AAG-U|GGAA 1381 UU-CCGAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UC-GU-UGG -GG-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCC -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-G---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-GC GGU-GG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----GGA 1981 -ACC-G--(- GAAA-)-CGG -A-UCUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GU-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA--C---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.ferro8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus ferrooxidans str. m-1 DSM 2392. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus ferrooxidans str. m-1 DSM 2392. ORGANISM Thiobacillus ferrooxidans. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 2392 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79417 (bases 1 to 354) isolate_name= m-1 NB: not the (T) strain BASE COUNT 271 a 240 c 342 g 217 t 3306 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(.GAAA-)G -CCNG-G--C UAAUACC-GC 481 AU-ANN---- ---------- ---------- ---------- ----NN-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----CAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCNA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCNC| UUUC-AG-UA 1021 --GG-GAA-- GA-A-AA-AA --GCC-UNG( C----UAAUA -----U---) CCAG-GC-UU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GNG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA NC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UC- 1261 G-GU-AAG|U CAG---AUGU G-AAA-CG-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCG-UUUG A-UAC-UGUC G-GACKA-GA GUU-----UG G-UA-GAGGG AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -AC-GU-UGG -GA-GG---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------CCU -UCUAG-UGU 1741 CG--CA---- --SS-(UAA- ---C)G-CA- AUAA-GUW-- C|C|G-CCK- K-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... ...CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CCU-CA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-N 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUN- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-SC-C UUAUG-G-G- -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.4 XANTHOMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.4 XANTHOMONAS_GROUP. ORGANISM 2.14.3.4 XANTHOMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.4.1 ENV.PAD61_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.4.1 ENV.PAD61_SUBGROUP. ORGANISM 2.14.3.4.1 ENV.PAD61_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD61 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26248|g498453 library_source= unidentified soil bacterium from paddy field BASE COUNT 70 a 69 c 84 g 56 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-GG -UA--CAGAG GGU-U-G-C- GA-AGC--(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAA -CC-U-CUC- UCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GCGGAA-(UC -AGCAUU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2076 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2076. str. SBR2076. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2076. str. SBR2076. ORGANISM str. SBR2076. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84607|g871728 isolate_name= SBR2076 BASE COUNT 97 a 88 c 131 g 72 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU-CU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GG GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GC----- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| -----G--C- G--CUC---- 661 ----UGAG-- AGG---A-|G CCUGC----- -GG|----CC G--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GG- GGA------- -----CC-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UAUG)--G GAG-GC-AG- C-A---GC-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GUAA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-A UU(--UU-CG --)GA-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.4.2 STENOTROPHOMONAS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.4.2 STENOTROPHOMONAS_SUBGROUP. ORGANISM 2.14.3.4.2 STENOTROPHOMONAS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB3_5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15111|g710317 library_source= Pele's Vents Bacterium DNA BASE COUNT 367 a 343 c 467 g 288 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U AGAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-GUCGG- A-A--UCU-G C-CUAU---U -UGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CAG---- 661 ----AUAG-- AUG---A-|G CCGAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----A---) CCCU-GA-GU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGC U-UACUA-GA GUG-----CG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AG-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GG-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCC -CUCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB25 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15112|g710318 library_source= Pele's Vents Bacterium DNA BASE COUNT 365 a 342 c 468 g 290 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U AAAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-GUCGG- A-A--UCU-G C-CUAU---U -UGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CAG---- 661 ----AUAG-- AUG---A-|G CCGAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-U A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----A---) CCCU-GA-GU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGU|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGC U-UACUA-GA GUG-----CG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AG-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GG-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCC -CUCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB47 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15113|g710319 library_source= Pele's Vents Bacterium DNA BASE COUNT 368 a 345 c 466 g 286 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-GUCGG- A-A--UCU-G C-CUAU---U -UGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CAG---- 661 ----AUAG-- AUG---A-|G CCGAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-GU-CC 1021 --GG-AAA-- GA-A-AA-GC --UUA-GGG( U----UAAUA -----A---) CCCU-GA-GU 1081 ---------- -------C-A U-GA-CGGU- A-CCG-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGC U-UACUA-GA GUA-----CG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AG-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GG-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCC -CUCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(CC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2112 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2112. str. SBR2112. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2112. str. SBR2112. ORGANISM str. SBR2112. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84636|g871757 isolate_name= SBR2112 BASE COUNT 97 a 93 c 138 g 72 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -GGC-CU--G ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUCA--C- G--CGA---- 661 ----UUAG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UACC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ste.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stenotrophomonas africae str. MGB. ACCESSION No information KEYWORDS No information. SOURCE Stenotrophomonas africae str. MGB. ORGANISM Stenotrophomonas africae. REFERENCE 1 AUTHORS Drancourt,M., Niel,L., Bollet,C. and Raoult,D. TITLE Stenotrophomonas africae sp. nov., an opportunistic human pathogen in Africa JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U62646|g1488281 isolate_name= MGB NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 361 a 337 c 460 g 290 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGU-A -GG--CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AA- GCA---GU-G 901 GGG-AWAUUU G-G-CAAU-- GG-GC-(GCA M)--VU-GAA UCCA|-GCCA UACC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--U--CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AU-CC --AGC-CGG( CU---UANUA -----C---) CUGG-UU-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-CG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUGG A-UAC-UGGA C-GACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-UCCA- 1441 -U-G-GC(-G AA-G)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-GCC-G(G 2881 -CGA)CGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UU--C A-CGGU-GUG GCC-GA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ste.maltop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stenotrophomonas maltophilia. ACCESSION No information KEYWORDS No information. SOURCE Stenotrophomonas maltophilia. ORGANISM Stenotrophomonas maltophilia. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59158 Former RDP Sids: Xan.maltop ATCC 13637 (T) = NCTC 10257 = NCIMB 9203 = ICPB 2648-67 = DSM 50170 NB: former name Xanthomonas maltophilia BASE COUNT 372 a 329 c 442 g 291 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UAGC-GGU-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU-CU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- G-N|-AN--N AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UUUU---U -CGUN-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-NA- CGA------- -----UC-CG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-NN- N-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UACC-GN-GU 961 G-G-GU-G-A A-GAA--G-G CN(--NN-CG --)GG-UUGU AAA--GCCC| UUUU-GU-NG 1021 --GG-AAA-- GA-A-AU-CC --AGC-UGG( U----UAAUA -----C---) CCGG-UU-GG 1081 ---------- -------G-A U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CNA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUN-N-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -N|-GU-CG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUGG A-UAC-UGGA C-GACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-UCCA- 1441 -U-G-GC(-G AA-G)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CNU- N-GGGNGUAC 1801 GGU-C---(G CAA)---N-N NN-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-GA-ACA |---C|A--G 2161 GU-GC-UGCN UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -NA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-GCC-G(G 2881 -CGA)CGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-U.... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K13 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K13.. ACCESSION No information KEYWORDS No information. SOURCE clone K13. ORGANISM clone K13. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91528|g987803 BASE COUNT 93 a 72 c 113 g 69 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUGG A-AAC-UGGA C-AACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCA- 1441 -U-G-GC(-G AA-G)GCAG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAAACA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UUAA-GUUCG C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.4.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.4.3 XYL.FASTIDIOSA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.4.3 XYL.FASTIDIOSA_SUBGROUP. ORGANISM 2.14.3.4.3 XYL.FASTIDIOSA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1055 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1055. str. SBR1055. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1055. str. SBR1055. ORGANISM str. SBR1055. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84491|g871612 isolate_name= SBR1055 BASE COUNT 89 a 99 c 141 g 59 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-N -GGC-CU--A ACNC-AUGCA A-GUC-GAGC 121 G--GC-NG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------NA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -NC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGCG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CGUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2059 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2059. str. SBR2059. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2059. str. SBR2059. ORGANISM str. SBR2059. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84593|g871714 isolate_name= SBR2059 BASE COUNT 94 a 99 c 141 g 60 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGCG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CGUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2015 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2015. str. SBR2015. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2015. str. SBR2015. ORGANISM str. SBR2015. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84559|g871680 isolate_name= SBR2015 BASE COUNT 95 a 98 c 141 g 59 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......U-- AGGC-GGC-A -GG--CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGCG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CGUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1104 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1104. str. SBR1104. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1104. str. SBR1104. ORGANISM str. SBR1104. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84531|g871652 isolate_name= SBR1104 BASE COUNT 93 a 99 c 143 g 59 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGG-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAG-- ---GCGGCG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CGUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1034 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1034. str. SBR1034. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1034. str. SBR1034. ORGANISM str. SBR1034. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84477|g871598 isolate_name= SBR1034 BASE COUNT 94 a 99 c 141 g 59 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-AUCGG- A-A--UCU-A C-CUUG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGCG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CGUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GN-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2050 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2050. str. SBR2050. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2050. str. SBR2050. ORGANISM str. SBR2050. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84586|g871707 isolate_name= SBR2050 BASE COUNT 102 a 87 c 131 g 69 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAGGUAG-GG (--GC----- ---------- ---------- 241 --------AA -)CU-CUACU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -GC-GUCGG- A-A--UCU-A C-CCUA---U -GGUG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UAGG-- AUG---A-|G CCGAC----- -GC|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xyl.fastid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xylella fastidiosa str. PWT-100 ATCC 35880. ACCESSION No information KEYWORDS No information. SOURCE Xylella fastidiosa str. PWT-100 ATCC 35880. ORGANISM Xylella fastidiosa. REFERENCE 1 AUTHORS Wells,J.M., Raju,B.C., Hung,H.-Y., Weisburg,W.G., Mandelco-Paul,L. and Brenner,B.J. TITLE Xylella fastidiosa gen. nov., sp. nov: Gram-negative, xylem-limited, fastidious plant bacteria related Xanthamonas spp. JOURNAL Int. J. Syst. Bacteriol. 37, 136-143 (1987) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35880 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26601 isolate_name= PWT-100 BASE COUNT 370 a 315 c 480 g 311 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUUGG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CCAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUA---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUUG--U- G--CGA---- 661 ----UUGG-- AUG---A-|G CCGAU----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-N A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--U-G CC(--UU-CG --)GG-UUGU AAA--GCCC| NUUU-GU-UG 1021 --GG-GAA-- GA-A-AA-GC --AAU-UGG( U----UAAUA -----C---) CUAG-UU-GU 1081 ---------- -------U-A U-GA-CGGU- A-CCC-G-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-GUGG A-UAC-UGGA U-AGCUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 GCC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGA -GU-GC---- ---------- 1681 -(AAA-UU)G ---------- ---------- ---------- -------GCA -CUCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------U ---GCGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- GA-UCU-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-UU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UG -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-NN-CA G-CGGU-GUG GCN-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.4.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.4.4 XAN.CAMPESTRIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.4.4 XAN.CAMPESTRIS_SUBGROUP. ORGANISM 2.14.3.4.4 XAN.CAMPESTRIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.hyacin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas hyacinthi. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas hyacinthi. ORGANISM Xanthomonas hyacinthi. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10754|g1922926 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 374 a 347 c 481 g 297 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UG-CCAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----AUAG-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAN-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-AG -GA--CAGAG GGC-U-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCAG-AAAC -CU-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.meloni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas melonis. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas melonis. ORGANISM Xanthomonas melonis. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10756|g1922928 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 374 a 346 c 481 g 299 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----AUAG-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-AG -GA--CAGAG GGC-U-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCAG-AAAC -CU-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.albiln 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas albilineans. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas albilineans. ORGANISM Xanthomonas albilineans. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., Daniels,M.J., De Baere,R., De Wachter,R. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95918|g1657410 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 375 a 344 c 481 g 298 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUGG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CCAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----AUAG-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-GAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GYGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-YA-GAGGA UGG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-AG -GA--CAGAG GGC-U-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCAG-AAAC -CU-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.saccha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas sacchari. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas sacchari. ORGANISM Xanthomonas sacchari. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10766|g1922931 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 368 a 347 c 484 g 299 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAMC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-CUUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----AUAG-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-NG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-GCC-G(G 2881 -CGA)CGGU- ---------- GA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. XC53. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. XC53. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24791 legacy_attribute= biovar:translucens isolate_name= XC53 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 288 a 266 c 362 g 237 t 3223 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....CG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-G-) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GCG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGC-GUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG---AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCGGU- GUA-CGA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUA--GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-N U--GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| C-G-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- UUAAG-GA-G A-CC-G-CCG --G-(-GA-C AA)-ACG-U- --A-G-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU---GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGCC CUAGUA-AUC 3001 GC-AGA-(UC -A-CAUU)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. XC53. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. XC53. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24791 legacy_attribute= biovar:translucens isolate_name= XC53 BASE COUNT 190 a 175 c 234 g 153 t 3624 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... .U-GGG--(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCGGU- GUA-CGA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUA--GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-N U--GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| C-G-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- UUAAG-GA-G A-CC-G-CCG --G-(-GA-C AA)-ACG-U- --A-G-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU---GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGCC CUAGUA-AUC 3001 GC-AGA-(UC -A-CAUU)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. X56. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. X56. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24789|g406188 legacy_attribute= biovar:translucens isolate_name= X56 BASE COUNT 181 a 170 c 227 g 144 t 3654 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ...GGG--(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCGGU- GUA-CGA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GNNACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-CCU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G U-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-AG -GA--CAGAG GGC-U-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCCAA-U CCCAG-AAAC -CU-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. X56. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. X56. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24789|g406188 legacy_attribute= biovar:translucens isolate_name= X56 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 281 a 263 c 359 g 230 t 3243 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .A--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----AUAG-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAGGC|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUA-U G-GACAAU-- GG-GC-(GCA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGUU A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CCG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG C-AACUA-GA GUG-----UG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCGGU- GUA-CGA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCUG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAC-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GNNACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-CCU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G U-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-AG -GA--CAGAG GGC-U-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCCAA-U CCCAG-AAAC -CU-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. XC41. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. XC41. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24792|g406190 legacy_attribute= biovar:phaseoli isolate_name= XC41 BASE COUNT 196 a 172 c 241 g 167 t 3600 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......GU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGN--(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGA U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-U-C -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -----C-CAC C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-N U--GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--C-AAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| C-G-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|NU C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CNAN-C--UC AACCC-UU-N |-GN--CUU- 2281 AG--UN-C-C AG-CNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NN-CU-C- U-AAG-GA-G N-NN-N-N-G --GU(-GN-N AA)-ACC-G- -GAGN-A-AG 2761 G-UG-GGG-A UG-ANG--UC -A-AGUC-AU CAU-G-GN-- NUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ANN-C(G 2881 -NGN)N---- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris str. XC41. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris str. XC41. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24792|g406190 legacy_attribute= biovar:phaseoli isolate_name= XC41 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 289 a 259 c 359 g 241 t 3228 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .A--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGC-GUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGA U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-U-C -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -----C-CAC C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-N U--GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--C-AAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| C-G-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|NU C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CNAN-C--UC AACCC-UU-N |-GN--CUU- 2281 AG--UN-C-C AG-CNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NN-CU-C- U-AAG-GA-G N-NN-N-N-G --GU(-GN-N AA)-ACC-G- -GAGN-A-AG 2761 G-UG-GGG-A UG-ANG--UC -A-AGUC-AU CAU-G-GN-- NUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ANN-C(G 2881 -NGN)N---- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.populi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas populi. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas populi. ORGANISM Xanthomonas populi. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., De Baere,R., De Wachter,R., Timmis,K.N. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95922|g1657415 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 366 a 341 c 470 g 297 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--UGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -URCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.cucurb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas cucurbitae str. LMG (T). ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas cucurbitae str. LMG (T). ORGANISM Xanthomonas cucurbitae. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10760|g1922923 isolate_name= LMG (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 372 a 346 c 479 g 301 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAR-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGR U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-Y|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-WGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.theico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas theicola. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas theicola. ORGANISM Xanthomonas theicola. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10763|g1922932 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 371 a 347 c 480 g 302 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCWA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-RA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AUUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campe7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., De Baere,R., De Wachter,R., Timmis,K.N. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95917|g1657412 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 347 c 481 g 301 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.vesitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas vesicatoria. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas vesicatoria. ORGANISM Xanthomonas vesicatoria. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10761|g1922934 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 346 c 481 g 300 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GYGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GYA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.campes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas campestris. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas campestris. ORGANISM Xanthomonas campestris. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS ATCC 33913 (T) = NCPPD 528 = PDDCC 13 legacy_attribute= biovar:pv. campestris BASE COUNT 369 a 340 c 475 g 300 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-N GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| NUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-NAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.cassav 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas cassavae. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas cassavae. ORGANISM Xanthomonas cassavae. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10762|g1922924 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 347 c 479 g 300 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---RCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAR-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-SC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.pisi1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas pisi. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas pisi. ORGANISM Xanthomonas pisi. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10758|g1922930 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 348 c 480 g 300 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAR-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.bromi1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas bromi. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas bromi. ORGANISM Xanthomonas bromi. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10764|g1922918 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 371 a 347 c 479 g 300 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GMRC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AR (--CU----- ---------- ---------- 241 --------UK -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---YC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.vasico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas vasicola. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas vasicola. ORGANISM Xanthomonas vasicola. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10755|g1922933 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 372 a 348 c 482 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.phased 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas phasedi. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas phasedi. ORGANISM Xanthomonas phasedi. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS NB: only two differences from Xan.oryzae BASE COUNT 362 a 336 c 468 g 289 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUNU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CNUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AN-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GN-NG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G NC(--UU-CG --)NG-UUGU AAA--GCCC| NUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AG. .......... .........G -(AUNNNA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GN-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GN-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UN-NN A-CGGU-GNG GCC-GA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.codiae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas codiaei. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas codiaei. ORGANISM Xanthomonas codiaei. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10765|g1922925 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 371 a 348 c 480 g 300 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GNNC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-NC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AAU-CGG( U----UAAUA -----C---) CCGG-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GA- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.oryzae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthamonas oryzae. ACCESSION No information KEYWORDS No information. SOURCE Xanthamonas oryzae. ORGANISM Xanthamonas oryzae. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS legacy_attribute= biovar:pv. oryzae NB: pv = pathovar BASE COUNT 367 a 335 c 464 g 292 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-N GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCN| NUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACNGG-G -G-C-CN--G 1861 C-A--CA-A. .......ANN N-N-GN-NNU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G N-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-NAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GNG GCC-GA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.oryza2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas oryzae. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas oryzae. ORGANISM Xanthomonas oryzae. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., De Baere,R., De Wachter,R., Timmis,K.N. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95921|g1657414 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 374 a 347 c 481 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.fraga2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas fragariae. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas fragariae. ORGANISM Xanthomonas fragariae. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., De Baere,R., De Wachter,R., Timmis,K.N. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95920|g1657413 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 371 a 350 c 479 g 299 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------CA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-ANG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GYGG A-UAC-UGGA U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UUAAA)-UCC -GU-RGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.fragar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas fragariae. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas fragariae. ORGANISM Xanthomonas fragariae. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS ATCC 33239 (T) = PDDCC 5715 = NCPPB 1469 = DSM 3587 BASE COUNT 365 a 337 c 471 g 297 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAGUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-N GAGG---AAU -AC-AUCGG- A-A--UCN-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 NU-ACG---- ---------- ---------- ---------- ---ACCC(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| NUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ANNNNA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-NN-NN N-CGGU-GUG GCC-GA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.axonop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas axonopodis. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas axonopodis. ORGANISM Xanthomonas axonopodis. REFERENCE 1 AUTHORS Moore,E.R., Kruger,A.S., Hauben,L., Seal,S.E., Daniels,M.J., De Baere,R., De Wachter,R., Timmis,K.N. and Swings,J. TITLE 16S rRNA gene sequence analyses and inter- and intrageneric relationships of Xanthomonas species and Stenotrophomonas maltophilia JOURNAL FEMS Microbiol. Lett. 151 (2), 145-153 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95919|g1657411 Ref 1: published erratum appears in FEMS Microbiol Lett 1997 Oct 15;155(2):231 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 375 a 346 c 479 g 302 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGG---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGA U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGA- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CACAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-AG -GA--CAGAG GGC-U-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCAG-AAAC -CU-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.hortor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas hortorum. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas hortorum. ORGANISM Xanthomonas hortorum. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10759|g1922927 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 372 a 349 c 481 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xan.arbori 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xanthomonas arboricola. ACCESSION No information KEYWORDS No information. SOURCE Xanthomonas arboricola. ORGANISM Xanthomonas arboricola. REFERENCE 1 AUTHORS Hauben,L., Vauterin,L., Swings,J. and Moore,E.R.B. TITLE 16S ribosomal DNA sequence comparison of all Xanthomonas species JOURNAL Unpublished (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10757|g1922929 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 372 a 349 c 481 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGG---AAU -AC-AUCGG- A-A--UCU-A C-UCUU---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCG--C- G--CGA---- 661 ----UUGA-- AUG---A-|G CCGAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-GU-UG 1021 --GG-AAA-- GA-A-AA-GC --AGU-CGG( U----UAAUA -----C---) CCGA-UU-GU 1081 ---------- -------U-C U-GA-CGGU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-GG- 1261 U-UU-AAG|U CUG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-GUGG A-UAC-UGGG U-CACUA-GA GUG-----UG G-UA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-UCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--AA-CU-- -------G|G -AU-GU-UGG -GU-GC---- ---------- 1681 -(AAU-UU)G ---------- ---------- ---------- -------GCA -CGCAG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CC-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-A-GG -GA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAC -CC-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.5 CARDIOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.5 CARDIOBACTERIUM_GROUP. ORGANISM 2.14.3.5 CARDIOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.hyther 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus hydrothermalis str. R3 DSM 7121 (T). ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus hydrothermalis str. R3 DSM 7121 (T). ORGANISM Thiobacillus hydrothermalis. REFERENCE 1 AUTHORS Durand,P., Reysenbach,A.-L., Prieur,D. and Pace,N.R. TITLE Isolation and characterization of Thiobacillus hydrothermalis sp. nov., a mesophilic obligately chemolithotrophic bacterium isolated from a deep-sea hydrothermal vent in Fiji Basin JOURNAL Arch. Microbiol. 159, 39-44 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 7121 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M90662 isolate_name= R3 BASE COUNT 364 a 345 c 484 g 311 t 2872 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-AUGGG- A-A--UCU-G C-CCUG---A -GGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCU---- 661 ----UGGG-- AUG---A-|G CCCAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUU-AU-CG 1021 --GG-GAA-- GA-A-UA-GG --UUG-UCG( C----UAAUA -----C---) CGGC-AA-CA 1081 ---------- -------C-U U-GA-CAUU- A-CCC-G-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GA-AG- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGG U-UUCUA-GA GUG-----UG G-UA-GAGGA UAG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUAUCUG-- ---------- ---------- ---------G 1501 GCC--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -UC-GU-UGG -GG-GA---- ---------- 1681 -(GUU-AG)- ---------- ---------- ---------- -------UCC -UUCAG-UGA 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UC--CAAUG GGU-A-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCUC-AAAG -CC-G-AUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thb.neapol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiobacillus neapolitanus str. X. ACCESSION No information KEYWORDS No information. SOURCE Thiobacillus neapolitanus str. X. ORGANISM Thiobacillus neapolitanus. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79420 (bases 1 to 339) isolate_name= X BASE COUNT 223 a 205 c 275 g 186 t 3487 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .....A-(-- -------CCU 541 CU-------- -)-UGA---- ---------- ----C-AA-- ---GCGU-G- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCACG--U- G--CCA---- 661 ----AAGG-- AUG---A-|G CCCAU----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUU-GU-UG 1021 --AG-GAA-- GA-A-UG-UG --UUU-GGG( U----UAAUA -----G---) UCCA-AA-UG 1081 ---------- -------C-U U-GA-CGUU- A-CUC-A-AA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUCU-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .........G GUG-C|GGNA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAAG- AACA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -UC-GU-CGG -GA-GG---- ---------- 1681 -(GNN-NN)- ---------- ---------- ---------- -------NCU -UUCGG-UGA 1741 CG--GA---- --SS-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |...C|A--G 2161 GU-GC-UGCA UG|--CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-- 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -R-AGUC-AU CAU-N----C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-G-AUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCAUU)-G CCA-CGGUG- AAUAC-GUU- UCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Car.homini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cardiobacterium hominis. ACCESSION No information KEYWORDS No information. SOURCE Cardiobacterium hominis. ORGANISM Cardiobacterium hominis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35014 BASE COUNT 373 a 331 c 466 g 296 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~ACUGA AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-AUGGG- A-A--UCU-G C-CUUU---U -GCUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 AG-------- -)-GGU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ ------G--| -CCUCG--C- G--GCA---- 661 ----AGAG-- AUG---A-|G CCCAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACNAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GU --GCG-UAG( U----UAAUA -----C---) CUGC-GC-A- 1081 ---------- -------A-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 C-CC-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGG C-GACUA-GA GUA-----UG A-AA-GAGGA AAG-C|GGAA 1381 UU-UCCAGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 GUC--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GC-GU-CGG -GU-U----- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- --------GA -CUCGG-UGC 1741 NG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GAAAU UG-ACGGG-G -A-C-CC--G 1861 C-N--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---UAGG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCU-AG-AGA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AC--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-G- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAC GGU-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUGAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS St.indolog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Suttonella indologenes. ACCESSION No information KEYWORDS No information. SOURCE Suttonella indologenes. ORGANISM Suttonella indologenes. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35015 Former RDP Sids: Kin.indolo ATCC 25869 = NCTC 10717 (T) NB: former name Kingella indologenes BASE COUNT 375 a 322 c 451 g 315 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUGAACUGA AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ------AGGG ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GACC---- ---|-----U NGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GU-AUAGG- A-A--UCU-A C-CUUG---G -GGUG-G-GG 421 -GAU-AA-CG U--------- ------AU-- G(-GAAA-)C -GUAC-G--C UAAUACC-AC 481 AU-AAC---- ---------- ---------- ---------- ---ACU-(-- --------UA 541 CG-------- -)-AGU---- ---------- ----CAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CCC---- 661 ----UUAG-- AUG---A-|G CCUAU----- -AU|----UG G--AUUA-G- CUA-G---UU 721 GG-UR-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GNCNAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-NG --)GG-UUGU AAA--GCAC| UUUC-GU-UA 1021 --GU-GAA-- GA-AAGG-UU --UAU-GGU( -----UAAUA ---------) CCUG-UG-AA 1081 ---------- -------U-U U-GA-CAUU- A-GCU-A-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAU UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUG A-AAC-UGGG U-AACUA-GA GUA-----UG U-GA-GAGGA AGG-C|GGAA 1381 UU-UCCAGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UU-GGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 GGC--AA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GC-AC---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------GUG -CUCGG-UAC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GAAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AC--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUGAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AC)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-UU ---------- ---------- ---------- -----(---- -AUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-G-C G-GU-UA-CC A-CGGU-GUG AUU-CA-NG- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dch.nodos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dichelobacter nodosus.. ACCESSION No information KEYWORDS No information. SOURCE Dichelobacter nodosus. ORGANISM Dichelobacter nodosus. REFERENCE 1 AUTHORS La Fontaine,S. and Rood,J.I. TITLE Evidence that Bacteroides nodosus Belongs in Subgroup Gamma of the Class Proteobacteria, Not in the Genus Bacteroides :Partial Sequence Analysis of a B. nodosus 16S rRNA Gene JOURNAL Int. J. Syst. Bacteriol. 40, 154-159 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54267 Former RDP Sids: Bac.nodosu NB: former name "Bacteroides" nodosus BASE COUNT 242 a 211 c 274 g 192 t 3457 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... ....A-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUG A-AAC-CGUA A-GACUA-GA GUA-----UG U-CA-GAGGA AGG-C|GGAA 1381 UU-UCCAGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 GGC--AA-UA CUGACA-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UA -CUCGG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GAAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CU-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 ....-...(- .....)..GU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AC--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAC GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGAG- ---------- ----CCAA-U CUGAG-AAAA -CC-G-UUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AG-CAC)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GCUA G(GGG-A)AC UGCGGU--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dch.nodosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dichelobacter nodosus str. 198A ATCC 27521. ACCESSION No information KEYWORDS No information. SOURCE Dichelobacter nodosus str. 198A ATCC 27521. ORGANISM Dichelobacter nodosus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27521 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35016 ATCC 27521 = VPI 5731-1 isolate_name= 198A BASE COUNT 410 a 330 c 465 g 324 t 2847 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGA AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUAUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUGUA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGG- A-A--UCU-G C-CUUA---U -GGUG-G-GG 421 -GAC-AA-CG U--------- ------AU-- G(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---AUU-(-- --------GA 541 AG-------- -)-AAU---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---GAAA--- ---)------ -----GA--| -CCUCG--C- G--CCG---- 661 ----UAAG-- AUG---A-|G CCUAU----- -AU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACNAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUU-AU-UA 1021 --GU-GAA-- GA-ACGG-UG --CAU-GGU( -----UAAUA ---------) CCCA-UG-CA 1081 ---------- -------A-U U-GA-CAUU- A-GCU-A-AG G-AA--AAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GU -G|-GU-UU- 1261 U-AU-AAG|U CAG---GUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUG A-AAC-CGUA A-GACUA-GA GUA-----UG U-CA-GAGGA AGG-C|GGAA 1381 UU-UCCAGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 GGC--AA-UA CUGACA-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GU-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UA -CUCGG-UAC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GAAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CU-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -UAC-A--(- GAGA-)-UGU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AC--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAC GGU-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUGAG-AAAA -CC-G-UUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AC)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.6 THIOMICROSPIRA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.6 THIOMICROSPIRA_GROUP. ORGANISM 2.14.3.6 THIOMICROSPIRA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.6.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.6.1 THTX.NIVEA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.6.1 THTX.NIVEA_SUBGROUP. ORGANISM 2.14.3.6.1 THTX.NIVEA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clypso 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Kim,Y.W., Yasuda,M., Yamagishi,A., Oshima,T. and Ohta,S. TITLE Characterization of the endosymbiont of a deep-sea bivalve, Calyptogena soyoae JOURNAL Appl. Environ. Microbiol. 61 (2), 823-827 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S79668|g1174290 symbiont_of= Calyptogena soyoae BASE COUNT 84 a 79 c 90 g 73 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .).....U-U 2221 GG-GU(UUAA -GU)CCCCGU AA-------- CGAG-C--GC AACCCUUU-A |-UC--CUU- 2281 AU--UUGC-A AG-UAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGCA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.ClypOr 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25710|g457193 geog_source= 2000 m depth in Oregon subduction zone biol_source= reducing sediment symbiont_of= Calyptogena sp. gill BASE COUNT 399 a 284 c 417 g 335 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-UUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 UA-------- -)-AAG---- ---------- ----UAAA-- ---GAAGGC- CUC-UA---- 601 --(------- --GUUAUA-- ---)------ -----UA-U| -GCUUU--C- G--CUA---- 661 ----UCAA-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGU-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUNN-NA-UU 1021 --AG-GAA-- GA-A-GA-AA --UAA-UGG( C----UAAUA -----U---) CUAU-UA-UU 1081 ---------- -------U-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CGCA--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UGC-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-UAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-UU -NA-CUA--- ---------- ---------- -----(---- -UUUNA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UAG-AG-A-C G-GU-UA-CC A-CGGU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clypsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25708|g457210 symbiont_of= Calyptogena sp. geog_source= 3,400 m depth in Monterey Canyon,CA biol_source= reducing sediment BASE COUNT 402 a 286 c 420 g 335 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-UUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 UA-------- -)-AAG---- ---------- ----UAAA-- ---GAAGGC- CUC-UA---- 601 --(------- --GGUUAUA- ---)------ -----UA-U| -GCUUU--C- G--CUA---- 661 ----UUAA-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGU-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --AG-GAA-- GA-A-GA-AA --UAA-UGG( U----UAAUA -----U---) CUAU-UA-UU 1081 ---------- -------U-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGG A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CGCA--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UGC-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-UAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAN-N-N- -AA-CUA--- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UAG-AG-A-C G-GU-UA-CC A-CGGU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clyps2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25715|g457211 geog_source= Japan (Kaiko trench) symbiont_of= Calyptogena sp. BASE COUNT 148 a 96 c 142 g 118 t 3872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 N--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-UUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 UA-------- -)-AAG---- ---------- ----UAAA-- ---GAAGGC- CUC-UAUG-- 601 --(------- ----UUA--- ---)------ ---UAUA-U| -GCUUU--C- G--CUA---- 661 ----UCAA-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGU-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --AG-GAA-- GA-A-GA-AA --UAA-UGG( U----UAAUA -----U---) CUAU-UA-UU 1081 ---------- -------U-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GG.. |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clyps3 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25716|g457212 geog_source= Japan (Kaiko trench) symbiont_of= Calyptogena sp. BASE COUNT 99 a 60 c 105 g 77 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... ........UA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clyps4 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25717|g457213 geog_source= 2,000 m depth in Kaiko trench, Japan biol_source= reducing sediment symbiont_of= Calyptogena sp. BASE COUNT 88 a 76 c 96 g 73 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ..AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-N-UU -AA-CUA--- ---------- ---------- -----(---- UUUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UAGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CAA... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clypel 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25719|g457195 (bases 1 to 920) geog_source= 500 m depth Santa Barbara Basin,CA biol_source= reducing sediment symbiont_of= Calyptogena elongata gill BASE COUNT 375 a 278 c 399 g 317 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 CA-------- -)-AAG---- ---------- ----UAAA-- ---GAAGGC- CUC-UAAU-- 601 --(------- ----UUA--- ---)------ ---UAUA-U| -GCUUU--U- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGU-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --AG-GAA-- GA-A-AA-AC --UAA-UGG( U----UAAUA -----C---) CCAU-UUAGU 1081 ---------- -------C-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......UUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(AUC-UA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CGCA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| UGC-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-UAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-U-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GC-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CUA--- ---------- ---------- -----(---- UUUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-C G-GU-UA-CC A-CGGU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Clyp.m 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99446 geog_source= 2300 m depth Galapagos Rift biol_source= hydrothermal vent symbiont_of= Calyptogena magnifica BASE COUNT 383 a 291 c 416 g 318 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .........C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UACU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGC---AAC -GC-GUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- A(-GAAA-)U -UCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GGAGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-U| -GCUUU--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --AG-GAA-- GA-A-AA-AC --UAA-UGG( U----UAAUA -----C---) CCAU-UA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----UA G-GA-GGGGA AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCUG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -CC-GU-UGG -GG-GG---- ---------- 1681 -(AAG-UG)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CGCA--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGG -A-GAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UGC-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-UAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -UGA)GGUA- ---------- GU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CUG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Vescch 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Felbeck,H. and Cavanaugh,C.M. TITLE Evidence for phylogenetic congruence among sulfur-oxidizing chemoautotrophic bacterial endosymbionts and their bivalve hosts JOURNAL J. Mol. Evol. 38, 533-542 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L25714|g457387 (bases 1 to 357) geog_source= 600 m depth in Gulf of Mexico biol_source= reducing sediment symbiont_of= Vesicomya chordata gill BASE COUNT 385 a 281 c 414 g 315 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ......GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UANU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----UAAA-- ---GGAGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-U| -GCUUU--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UUCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --AG-GAA-- GA-A-AA-AC --UAA-UGG( U----UAAUA -----C---) CUAU-UA-GU 1081 ---------- -------C-U U-GA-CGUU- A-CUU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -UC-GU-UGA -GG-GG---- ---------- 1681 -(GGU-UA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CGCA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UGC-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA........ .......... .......... |......... 2281 .....UGC-C AG-CAG---- ---------- ---------- --CA(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- AU-GCUAA-U CUCAC-AAAU -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AUA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CUG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CAGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Bath.t 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lane,D.J., Olsen,G.J., Giovannoni,S.J., Pace,B., Pace,N.R., Stahl,D.A. and Felbeck,H. TITLE Sulfur-oxidizing bacterial endosymbionts: analysis of phylogeny and specificity by 16S rRNA sequences JOURNAL J. Bacteriol. 170, 2506-2510 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99445 geog_source= 2300 m depth Galapagos Rift biol_source= hydrothermal vent symbiont_of= Bathymodiolus thermophilus gill BASE COUNT 376 a 288 c 407 g 302 t 3003 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -CUGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GUGGAG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CUUCA--C- G--CUA---- 661 ----CUAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAA-- GA-A-AA-GC --UAA-UGG( U----UAAUA -----C---) CCAU-UA-GC 1081 ---------- -------C-U U-GA-CGUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----UA G-UA-GAGGA AAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(AUU-UA)- ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-A-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- AA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCUAA-U CUCAU-AAAC -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCN-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.MAR1 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lee,H.K. and Cavanaugh,C.M. TITLE Intracellular coexistance of methano- and thioautotrophic bacteria in a hydrothermal vent mussel JOURNAL Proc. Natl. Acad. Sci. U.S.A. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29163|g903949 symbiont_of= mussel thioautotrophic gill isolate_name= MAR1 BASE COUNT 366 a 274 c 394 g 295 t 3047 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AG-CC ---------- ------AG-- A(-GAAA-)U -CUGG-A--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GUGGAG- GAC-C----- 601 --(------- ---UUCG--- ---)------ ------G-G| -CUUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GC-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-AA-GC --UAA-UGG( U----UAAUA -----C---) CCAU-UA-GC 1081 ---------- -------C-U U-GA-CGUU- A-ACU-U-UA G-AA--GA.. .......... 1141 .......... .........( .......AGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGAAGG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -CC-GU-UGG -GA-GG---- ---------- 1681 -(AUU-UA)- ---------- ---------- ---------- -------CCU -CUUAG-UGG 1741 CG--AA---- --CG-(UAA- ---C)G-CG- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-A- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG GGU-C-G-C- AC-UCG-C(G 2881 -AGA)GC--- ---------- AA-GCUAA-U CUCAU-AAAC -CU-U-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lct.mucor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leucothrix mucor.. ACCESSION No information KEYWORDS No information. SOURCE Leucothrix mucor. ORGANISM Leucothrix mucor. REFERENCE 1 AUTHORS ., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky ,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring,S TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87277|g1165116 BASE COUNT 382 a 331 c 465 g 327 t 2871 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CCAG---U -UGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---ACAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--U- G--CAA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAA-- GA-A-GG-GG --UUU-GUG( U----UAAUA -----G---) CGCG-GA-UC 1081 ---------- -------U-C U-NA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UG- 1261 U-UU-AA-|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCC-UCUG A-UAC-UGGA U-AACUA-GA GUU-----UG G-GA-GAGGG GAG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CC-- ----GGUA-G UC----CAC- G-UC-GU--A 1621 AAC-G-UAGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-CU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------AGU -CUUAG-UGG 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAA- UG-ACGGG-G -G-C-CCU-G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-UC-UUG ACA-UC|--- ---------U ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 GG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -GGAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- AA-CCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GUUGGG- UU-GC-AUAA -AGU---UAG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NNNGG-U-C G-CU-UA-CC A-CUUU-CAU AUU-CA-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GNN-A)-- ---------- -AUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2039 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2039. str. SBR2039. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2039. str. SBR2039. ORGANISM str. SBR2039. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84578|g871699 isolate_name= SBR2039 BASE COUNT 96 a 83 c 127 g 69 t 4001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-A -UGN-UU--A AGAC-GUGCA A-GUC-GUGC 121 G--GU-A--G AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CUU|-GA--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AG-CC C--------- ------AG-- C(-GAAA-)G -CUGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thtx.ramos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiothrix ramosa.. ACCESSION No information KEYWORDS No information. SOURCE Thiothrix ramosa. ORGANISM Thiothrix ramosa. REFERENCE 1 AUTHORS Polz,M.F., Odintsova,E. and Cavanaugh,C.M. TITLE Phylogenetic relationships of the filamentous sulfur bacterium Thiothrix ramosa based on 16S rRNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 46, 94-97 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32940|g987512 BASE COUNT 372 a 323 c 448 g 286 t 2947 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCA|-U 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A AGAC-AUGCA A-GUC-GAAC 121 G--GA----A UC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--UU----- ---------- ---------- 241 --------CG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GAU|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GAGGG- A-A--UCU-A C-UGAG---U -AGUG-G-GG 421 -GAC-AG--C C--------- ------GG-- C(-GAAA-)G -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---GCAAG-- ---)------ ---------| -----C--C- G--CUA---- 661 ----UUUA-- AUG---A-|G CCBGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GG-GAA-- GA-U-AA--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-U) A-U-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGG A-GACUA-GA GUG-----UG G-GA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCCG-- ---------- ---------- ---------G 1501 AGC--AA-CA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU---- --C-CC---- ---------- 1681 -(GCU-UU)A ---------- ---------- ---------- -------GGG -UUUGG-UGG 1741 UG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---AGUG--- -AA----CUU 1981 -AGC-A--(- GAAA-)-UGU -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UA-ACA |---C|A--G 2161 GU-GC-UGAC CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GCA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCAG-AAAG -CC-A-UCC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-C-GUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU UAA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAAGG-G-C G-CUUUG-CC AACGGU-GUC GCG--A-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thtx.nivea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiothrix nivea str. JP2 ATCC 35100. ACCESSION No information KEYWORDS No information. SOURCE Thiothrix nivea str. JP2 ATCC 35100. ORGANISM Thiothrix nivea. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S .J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35100 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79437 (bases 1 to 421) isolate_name= JP2 BASE COUNT 268 a 225 c 322 g 206 t 3355 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .AGUG-G-GG 421 -GAC-AG-CC C--------- ------AG-- Y(-GAAA-)G -CUNG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUA---- 661 ----ACWG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGNU- A-CCC-A-CA G-AA--GAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-N-NAC- 1321 -UGCA-CCUG A-UAC-UGGG G-GGCUA-GA AUG-----UG G-GA-GAGGA GAG-U|AGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-CAG -GC-CC---- ---------- 1681 -(GCU-UU)A ---------- ---------- ---------- -------GGG -UNUGG-UGG 1741 UG--NA---- --GN-(UAA- ---C)G-UA- UUAA-GUUG. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAAA-)-UGU -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-ACA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCCAG-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thtx.nive2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiothrix nivea str. JP2 DSM 5205 (T). ACCESSION No information KEYWORDS No information. SOURCE Thiothrix nivea str. JP2 DSM 5205 (T). ORGANISM Thiothrix nivea. REFERENCE 1 AUTHORS Teske,A.P., Ramsing,N.B., Kver,J. and Fossing,H. TITLE Phylogeny of Thioploca and related filamentous sulfide-oxidizing bacteria JOURNAL Syst. Appl. Microbiol. 18, 517-526 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 5205 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40993|g886407 isolate_name= JP2 BASE COUNT 358 a 326 c 456 g 281 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-NNN-N -UGC-UU--A ANAC-AUGCA A-GUC-GGAC 121 G--GG-G--G UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------C (--UU----- ---------- ---------- 241 --------CG -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- A-A--UCU-G C-CUGU---U -AGUG-G-GG 421 -GAC-AG-CC C--------- ------AG-- C(-GAAA-)G -CUGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UG--C- G--CUA---- 661 ----ACAG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCN-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-U-AA--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CC- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-CCUG A-UAC-UGGG G-GGCUA-GA AUG-----UG G-GA-GAGGA GAG-U|AGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAG-A UC-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-CAG -GC-CC---- ---------- 1681 -(GCU-UU)A ---------- ---------- ---------- -------GGG -UUUGG-UGG 1741 UG--CA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAAA-)-UGU -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-ACA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCCAG-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.6.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.6.2 THIOMICROSPIRA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.6.2 THIOMICROSPIRA_ASSEMBLAGE. ORGANISM 2.14.3.6.2 THIOMICROSPIRA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira sp.. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira sp. ORGANISM Thiomicrospira sp. REFERENCE 1 AUTHORS Muyzer,G., Teske,A.P., Wirsen,C.O. and Jannasch,H.W. TITLE Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments JOURNAL Arch. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40813|g790927 legacy_attribute= bacterium, recovered as DGGE band No.2. legacy_attribute= Partial 16S rRNA sequence of a Thiomicrospira-crunogena related BASE COUNT 145 a 94 c 162 g 118 t 3857 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(..CG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-CACAAU-- GA-GG-(GNA A)-CCU-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAG-- GA-A-GA-UU --AAG-UAG( C----UAAUA -----C---) CUGC-UU-AG 1081 ---------- -------U-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG .......... 1141 .......... .........( .......... .....UA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCG A-UAC-UGGC A-AUCUA-GA GUU-----UA A-GA-GAGGG AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CUU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAA- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -GUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.crunog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira crunogena. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira crunogena. ORGANISM Thiomicrospira crunogena. REFERENCE 1 AUTHORS Muyzer,G., Teske,A.P., Wirsen,C.O. and Jannasch,H.W. TITLE Phylogenetic relationships of Thiomicrospira species and identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments JOURNAL Arch. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40810|g790924 BASE COUNT 380 a 303 c 430 g 319 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA-AA-C NA-------- ---------- ---------- ---------- ---------- 181 ---------- -----CAAGA ACAAUCA--C (--UU----- ---------- ---------- 241 --------CG -)G--UGUGC GUUUUUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -AGUU-G-GG 421 -GAC-AA-CA U--------- ------AU-- G(-GAAA-)C -GUAU-G--C UAAUACC-GA 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----UAAA-- ---GGUGCCC UC--UC---- 601 --(------- ---CUUG--- ---)------ -----GA--| AGGUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GA-GG-(GAA A)-CCU-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAG-- GA-A-GA-UU --AAG-UAG( C----UAAUA -----C---) CUGC-UU-AG 1081 ---------- -------U-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCG A-UAC-UGGC A-AUCUA-GA GUU-----UA A-GA-GAGGG AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CUU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAA- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -GUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NN--N 1861 N-N--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--NGAANA 1921 G......... ..C-CC-UUG ANN-UC|--- ---------C ---UNCG--- -NA----CUU 1981 -UCU-A--(- GAGN-)-NAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CAU---- ---------- ---------- ----(---UU ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-N- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAAAG AGC-A-G-C- CA-ACU-G(G 2881 -CGA)CAGU- ---------- GC-GCGAA-U CUCAU-AAAA -CC-U-CUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.L12-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira sp. str. L12. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira sp. str. L12. ORGANISM Thiomicrospira sp. REFERENCE 1 AUTHORS Distel,D.L. and Wood,A.P. TITLE Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis JOURNAL J. Bacteriol. 174, 6319-6320 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01576 geog_source= 2300 m depth Galapagos Rift biol_source= hydrothermal vent isolate_name= L12 BASE COUNT 369 a 287 c 403 g 307 t 3010 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -----CAAGA ACAAUCA-CC (--UU----- ---------- ---------- 241 --------CG -)G--UGUGC GUUCUUG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -AGUU-G-GG 421 -GAC-AA-CA U--------- ------AU-- G(-GAAA-)C -GUAU-G--C UAAUACC-GA 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----UAAA-- ---GGUGCC- CUC-UC---- 601 --(------- ---CUUG--- ---)------ -----GA-A| -GGUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GA-GG-(GAA A)-CCU-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAG-- GA-A-GA-UU --AAG-UAG( C----UAAUA -----U---) CUGC-UU-AA 1081 ---------- -------U-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACNNGCU-A ACUCU-GUG( CCA--GCAGC CGCNGUA-A) U-A-C-AGAN |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCG A-UAC-UGGC A-AUCUA-GA GUU-----UA A-GA-GAGGG AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CUU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAA- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -AUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CU-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-U--GU AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAAAG AGC-A-G-C- CA-ACU-G(G 2881 -CGA)CAGU- ---------- GC-GCGAA-U CUCAU-AAAA -CC-U-CUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UC........ .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.L12-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira sp. str. L12. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira sp. str. L12. ORGANISM Thiomicrospira sp. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J ., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79440 (bases 1 to 405) geog_source= 2300 m depth Galapagos Rift biol_source= hydrothermal vent isolate_name= L12 BASE COUNT 283 a 215 c 295 g 233 t 3350 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- A-A--UCU-A C-CCUU---U -AGUU---GG 421 -GAC-AA-CA U--------- ------AU-- G(-GAAA-)C -GUAU-G--C UAAUACC-GA 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----UAAA-- ---GGUGCC- CUC-UC---- 601 --(------- ---CUUG--- ---)------ -----GA-A| -GGUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GA-GG-(GAA A)-CCU-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAG-- GA-A-GA-UU --AAG-UAG( C----UAAUA -----U---) CUGC-UU-AA 1081 ---------- -------U-U U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .....AGAGA AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACN-UNNG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CUU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- UU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAA- G-CC-GU--N 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UU---- ---------- 1681 -(AUU-NA)A ---------- ---------- ---------- -------AAG -AUUAG-UAG 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-NG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAAAG AGC-A-G-C- CA-ACU-G(G 2881 -CGA)CAGU- ---------- GC-GCGAA-U CUCAU-AAAA -CC-U-CUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.spMA26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira sp. str. MA2-6. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira sp. str. MA2-6. ORGANISM Thiomicrospira sp. REFERENCE 1 AUTHORS Muyzer,G., Teske,A.P., Wirsen,C.O. and Jannasch,H.W. TITLE Phylogenetic relationships of Thiomicrospira species and identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments JOURNAL Arch. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40811|g790925 isolate_name= MA2-6 BASE COUNT 388 a 321 c 450 g 319 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ------CAAG AACAAAC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GGGCG AUCUUG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CCUU---U -AGUU-G-GG 421 -GAC-AA-CA U--------- ------AU-- G(-GAAA-)C -GUAU-G--C UAAUACC-GA 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----UAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA--| AGCUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-NCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GA-GG-(GAA A)-CCU-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GU-GAG-- GA-A-AG-GU --UAG-UCG( C----UAAUA -----U---) CGGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-ACU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CGG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UCCG A-UAC-UGGC A-AUCUA-GA GUU-----UA G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -GUUAG-UAG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-N- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-GG -UA--CAAAG AGC-A-G-C- UA-GCU-G(G 2881 -CGA)CAGU- ---------- GC-GCGAA-U CUCAU-AAAA -CC-U-CUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.3611 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 3611.. ACCESSION No information KEYWORDS No information. SOURCE clone 3611. ORGANISM clone 3611. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89313 BASE COUNT 54 a 41 c 62 g 47 t 4172 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... ........G- CUU-G---UU 721 GG-UA-AG-( GA-AAA-GC) -U-UUACC-A A|-GGC-UC- GAU------- -----CU-AA 781 UAUG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUUU---A 841 (CUGA-GA-C ACG)--GCCC -AGA-CGUCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCU- G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CUUUG --)GG-UUGU AAA--GCUC| UUUU-GU-CG 1021 --GG-AAA.. .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.peloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira pelophila. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira pelophila. ORGANISM Thiomicrospira pelophila. REFERENCE 1 AUTHORS Muyzer,G., Teske,A.P., Wirsen,C.O. and Jannasch,H.W. TITLE Phylogenetic relationships of Thiomicrospira species and identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments JOURNAL Arch. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40809|g790923 DSM 1534 (T) = ATCC 27801 BASE COUNT 387 a 307 c 438 g 320 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AAU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GNAC 121 G--NA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CCUU---U -AGUU-G-GG 421 -GAU-AC-CG U--------- ------AU-- G(-GAAA-)C -GUAC-G--U UAAUACC-GA 481 AU-GAG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GGUGCC- CU--CUU--- 601 --(------- ---CUUG--- ---)------ ---AAAG--| --GUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CG-AG --)GG-UUGU AAA--GCAC| UUUU-AG-UG 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-A-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GN -N|-NA-UU- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -GGCG-AUUG A-AAC-UGGC A-GUCUA-GA GUU-----UA G-UA-GAGGN AAG-G|GNAA 1381 UU-UCUGGA- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -AUUAG-UAG 1741 CG--CN---- --NN-(NAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UN|N 2701 N-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC AGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GU-GCUAA-U CUGAA-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-N G-CU-CA-CC A-CUUU-GUG AUU-NA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.thyasi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira thyasirae str. TG-2 DSM 5322. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira thyasirae str. TG-2 DSM 5322. ORGANISM Thiomicrospira thyasirae. REFERENCE 1 AUTHORS Distel,D.L. and Wood,A.P. TITLE Characterization of the gill symbiont of Thyasira flexuosa (Thyasiridae: Bivalvia) by use of polymerase chain reaction and 16S rRNA sequence analysis JOURNAL J. Bacteriol. 174, 6319-6320 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 5322 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L01479 isolate_name= TG-2 NB: renaming Wood & Kelly Arch Microbiol 159, 45-47 (1993) former name Thiomicrospira thyasiris BASE COUNT 361 a 281 c 403 g 297 t 3034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- NCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CCUU---U -AGUU-G-GG 421 -GAU-AC-CG U--------- ------AU-- G(-GAAA-)C -GUAC-G--U UAAUACC-GA 481 AU-GAG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GGUGCCC CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GGUAU--C- G--CUA---- 661 ----AAGG-- AUG---A-|G CCCAU----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--NG-AG --)GG-UUGU AAA--GCAC| UUUU-AG-UG 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-A-CA U-AA...... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ..G-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGN- NCG-UAG-GC -N|-GA-UU- 1261 G-UU-AAG|U CAG---UUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -GGCG-AUUG A-AAC-UGGC A-GUCUA-GA GUU-----UA G-UA-GAGGG AAG-G|GGAA 1381 UU-UCUGGA- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-UCAG- 1441 -U-U-GC(-G AA-G)GCGC- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AAG -AUUAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC AGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GU-GCUAA-U CUGAA-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCC -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA...... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cyc.pugeti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cycloclasticus pugetii str. PS-1 (T) ATCC 51542. ACCESSION No information KEYWORDS No information. SOURCE Cycloclasticus pugetii str. PS-1 (T) ATCC 51542. ORGANISM Cycloclasticus pugetii. REFERENCE 1 AUTHORS Dyksterhouse,S.E., Gray,J.P., Herwig,R.P., Lara,J.C. and Staley,J.T. TITLE Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments JOURNAL Int. J. Syst. Bacteriol. 45, 116-123 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51542 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12624|g639913 geog_source= Sinclair Inlet, Puget Sound biol_source= surface sediments isolate_name= PS-1 (T) BASE COUNT 387 a 336 c 455 g 314 t 2884 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAA---U -AGUG-G-GG 421 -GAC-AA-CC U--------- ------GG-- U(-GWAA-)A -CCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AA-GU --UUA-AGG( U----UAAUA -----A---) CCUU-AG-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU U-AGCUA-GA GUG-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GC-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CCG -CUUAG-UGG 1741 UG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C -UG--CUACA AUGGC-C-GG -UA--CAGAG GGC-C-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCUU-AAAG -CC-G-GUC- CUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cyc.puget2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cycloclasticus pugetii str. PS-1 (T) ATCC 51542. ACCESSION No information KEYWORDS No information. SOURCE Cycloclasticus pugetii str. PS-1 (T) ATCC 51542. ORGANISM Cycloclasticus pugetii. REFERENCE 1 AUTHORS Dyksterhouse,S.E., Gray,J.P., Herwig,R.P., Lara,J.C. and Staley,J.T. TITLE Cycloclasticus pugetii gen. nov., sp. nov., an aromatic hydrocarbon-degrading bacterium from marine sediments JOURNAL Int. J. Syst. Bacteriol. 45, 116-123 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51542 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34955|g632913 geog_source= Sinclair Inlet, Puget Sound biol_source= surface sediments isolate_name= PS-1 (T) BASE COUNT 387 a 336 c 455 g 314 t 2884 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CUAA---U -AGUG-G-GG 421 -GAC-AA-CC U--------- ------GG-- U(-GWAA-)A -CCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C WCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AA-GU --UUA-AGG( U----UAAUA -----A---) CCUU-AG-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGCG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU U-AGCUA-GA GUG-----UG G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GC-GG---- ---------- 1681 -(-GU-UU)- ---------- ---------- ---------- -------CCG -CUUAG-UGG 1741 UG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C -UG--CUACA AUGGC-C-GG -UA--CAGAG GGC-C-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCUU-AAAG -CC-G-GUC- CUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FL5_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone FL5.. ACCESSION No information KEYWORDS No information. SOURCE clone FL5. ORGANISM clone FL5. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10936 BASE COUNT 358 a 287 c 399 g 284 t 3048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .GU-AUAGG- A-A--CUU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------GU-- G(-GAAA-)C -GCAC-G--C UAAUAA--GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--CCU--- 601 --(------- ---UUCG--- ---)------ ----GGG--| -CCUCG--U- G--CUA---- 661 ----CUAG-- AUA---G-|G CCUAU----- -AU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-AC 1021 --GU-GAG-- GA-AAAG-UU --AAG-UCU( -----UAAUA -----C---) GCUU-AG-CC 1081 ---------- -------C-- U-GA-CGUU- A-ACG-U-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU U-GGCUA-GU GUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-GUG -AA-AG---- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- -------CUU -UUGCG-UAU 1741 CG--AA---- --GC-(UAA- ---C)N-CG- AUAA-GUUG- C|C|G-CCU- G-GGGAGUAC 1801 CGC-C---(G CAA)---C-U NG-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--N 1861 N-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---AGCG--- -AA----GAU 1981 -UCU-A--(- GAGA-)-UAG -A-AUUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-C AU-CAU---- ---------- ---------- ----(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCAAA-U CUCAU-AAAA -CC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 C-UAG-G-CU -AA-CU---- ---------- ---------- -----(---- -UCGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GAGG..... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mp.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylophaga marina.. ACCESSION No information KEYWORDS No information. SOURCE Methylophaga marina. ORGANISM Methylophaga marina. REFERENCE 1 AUTHORS de Zwart,J.M.M., Nelisse,P.N. and Kuenen,J.G. TITLE Isolation and characterisation of Methylophaga sulfidovorans, sp. nov.; an obligately methylotrophic, aerobic dimethylsulfide oxidizing bacterium from a microbial mat JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95459|g1181153 BASE COUNT 384 a 325 c 455 g 326 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AUGAA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GG|-AU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- G-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------CC-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--U- G--CUA---- 661 ----UUAG-- AUG---A-|A CCUAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AG-GU --UGU-AAG( U----UAAUA -----C---) CUUG-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGGA U-GGCUA-GA GUG-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-AUG -GA-G----- ---------- 1681 -(AAU-UU)A ---------- ---------- ---------- --------UU -CUUUG-UGU 1741 AU--CGAA-- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---AGCG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AA -UA--CAAAG GGU-U-G-C- UA-ACU-C(G 2881 -CGA)GAGU- ---------- AU-GCUAA-U CCCAU-AAAG -CU-A-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-C G-CU-UA-CC A-CUUU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAC G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mp.thalass 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylophaga thalassica.. ACCESSION No information KEYWORDS No information. SOURCE Methylophaga thalassica. ORGANISM Methylophaga thalassica. REFERENCE 1 AUTHORS de Zwart,J.M.M., Nelisse,P.N. and Kuenen,J.G. TITLE Isolation and characterisation of Methylophaga sulfidovorans, sp. nov.; an obligately methylotrophic, aerobic dimethylsulfide oxidizing bacterium from a microbial mat JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95460|g1181155 BASE COUNT 385 a 321 c 461 g 324 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AUGAA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CUG|-AU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- G-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------CC-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUCG--U- G--CUA---- 661 ----UUAG-- AUG---A-|A CCUAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AG-GU --UAU-GCG( U----UAAUA -----C---) CGUA-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGGA U-GGCUA-GA GUG-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-AUG -GA-G----- ---------- 1681 -(AAU-UU)A ---------- ---------- ---------- --------UU -CUUUG-UGU 1741 AU--CGAA-- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GAU 1981 -UGA-A--(- GAGA-)-UUC -G-AUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAAAG GGU-U-G-C- UA-ACU-C(G 2881 -CGA)GGGU- ---------- AU-GCUAA-U CCCAU-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-A-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-C G-CU-UA-CC A-CUUU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mp.thalas2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylophaga thalassica. ACCESSION No information KEYWORDS No information. SOURCE Methylophaga thalassica. ORGANISM Methylophaga thalassica. REFERENCE 1 AUTHORS Janvier,M. and Grimont,P.A.D. TITLE The genus Methylophaga, a new line of descent within phylogenetic branch gamma of Proteobacteria JOURNAL Res. Microbiol. 146, 543-550 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87339|g829115 NB: This sequence has NOT been checked for contamination by vector sequences BASE COUNT 385 a 320 c 455 g 329 t 2887 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- UCU|GAU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- G-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------CC-- G(-GAAA-)C -G-CU----C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---GUAA--- ---)------ -----GA--| -CCUCG--U- G--CUA---- 661 ----UUAG-- AUG---A-|A CCUAU----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AG-GU --UAU-GCG( U----UAAUA -----C---) CGUA-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 --UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGGA U-GGCUA-GA GUG-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-AUG -GA-GAA--- ---------- 1681 -(-UU-UA)- ---------- ---------- -U-------- -------UCU -UUGUG-UAU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-CG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---ACGG--- -AA----GAU 1981 -UGA-A--(- GAGA-)-UUC -G-AUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCGCUA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAAAG GGU-U-G-C- UA-ACU-C(G 2881 -CGA)GGGU- ---------- AU-GCUAA-U CCCAU-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-A-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-C G-CU-UA-CC A-CUUU-GUG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGU .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.6.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.6.3 FRANCISELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.6.3 FRANCISELLA_SUBGROUP. ORGANISM 2.14.3.6.3 FRANCISELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psr.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Piscirickettsia salmonis.. ACCESSION No information KEYWORDS No information. SOURCE Piscirickettsia salmonis. ORGANISM Piscirickettsia salmonis. REFERENCE 1 AUTHORS Fryer,J.L., Lannan,C.N., Giovannoni,S.J. and Wood,N.D. TITLE Piscirickettsia salmonis gen. nov.,sp. nov., the causative agent of an epizootic disease in salmonid fishes JOURNAL Int. J. Syst. Bacteriol. 42, 120-126 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60783 BASE COUNT 392 a 321 c 482 g 321 t 2860 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UUU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------UA-- G(-GAAA-)C -UGAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----UAAA-- ---GAGGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUCU--U- G--CUA---- 661 ----GGAG-- AUG---A-|G CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-NC- -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-AC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UA --AGC-UAA( U----UAAUA -----C---) UUGG-CU-UA 1081 ---------- -------A-U U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-AG- 1261 A-UU-AAG|U UGG---AUGU G-AAA-UC-C CA-GGG-C(- UN-A)A-CCU -UG-G-AAC- 1321 -UGCA-UCCG A-AAC-UGGU A-UUCUA-GA GUA-----UG G-UA-GAGGA AAG-U|GGUU 1381 UC-GCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CNNUCUG-- ---------- ---------- ---------G 1501 AUC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AU-UC---- ---------- 1681 -(CCU-UA)- ---------- ---------- ---------- -------GAG -UUUAG-UGG 1741 CG--UA---- --SS-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UNAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----AG---| CUN-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAC GGA-G-G-C- GA-AGC-A(G 2881 -CGA)UGUG- ---------- GA-GCGAA-C CUGAG-AAAG -CG-C-CUN- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GAA- UU-GC-ACCA -GAA-G-GGG 3121 C-UAG-G-CU -AA-CU---- ---------- ---------- -----(---- -UUA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-GU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-GUAG G(N-A-A)CC UGCGGC--UG GAUCACCUCC 3361 UU.~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wlb.persic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolbachia persica. ACCESSION No information KEYWORDS No information. SOURCE Wolbachia persica. ORGANISM Wolbachia persica. REFERENCE 1 AUTHORS Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., Mallavia,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21292 BASE COUNT 383 a 303 c 448 g 325 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUAAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CNG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CNAU---C -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUAGC- ----U----- 601 --(------- ---UUCG--- ---)------ ------A--| -GCUGU--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAN-GG) -C-CUACC-A A|-GGC-CA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-NG 1021 --GG-GAG-- GA-A-AG-CC --UUG-AGG( U----UAAUN -----G---) CCUU-UA-GG 1081 ---------- -------A-A U-GA-CGUU- A-CCC-N-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A NCUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-N)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACN-CUN AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AG-UC---- -G-------- 1681 -(GUG-UN)A A--------- ---------- ---------- -------GGC -UCUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-UG- AUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-NAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--NAGAG GGC-U-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis str. Fx1. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis str. Fx1. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Clarridge,J.E.,III, Raich,T.J., Sjoested,A., Sandstroem,G., Darouiche,R.O., Shawar,R.M., Georghiou,P.R., Osting,C. and Vo,L. TITLE Characterization of two unusual clinically significant Francisella strains JOURNAL J. Clin. Microbiol. 34, 1995-2000 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X98070 (bases 1 to 243) isolate_name= Fx1 BASE COUNT 140 a 106 c 162 g 115 t 3853 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UUA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUU. .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.UU--GAU- 2281 AG--UNAC-C AU-CA----- ---------- ---------- ---U(---UA ---ANU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCNAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AG....).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella novicida str. Utah 11 ATCC 15482. ACCESSION No information KEYWORDS No information. SOURCE Francisella novicida str. Utah 11 ATCC 15482. ORGANISM Francisella novicida. REFERENCE 1 AUTHORS Wilson,K.H., Hills,H.G. and Zwadyk,P. TITLE Phylogeny of Francisella correlated with the epidemiology of tularemia JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15482 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26084|g498263 ATCC 15482 = FSC 040 legacy_attribute= biovar:variety novicida isolate_name= Utah 11 BASE COUNT 375 a 304 c 438 g 311 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-NC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUGGC- ----U----- 601 --(------- ---UUCG--- ---)------ ------G--| -GCUGU--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-G--GG 1081 ---------- -------GGA G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUK( CCA--GCANC CGCGGUA-A) U-A-C-GGGG |-GGUN-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGSC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CU-VU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AG-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGC -UCUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-DC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22919 (bases 1 to 244) geog_source= Russia biol_source= water BASE COUNT 131 a 104 c 152 g 103 t 3886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22921 (bases 1 to 246) geog_source= Charney, France BASE COUNT 131 a 104 c 154 g 103 t 3884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .G--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis.. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Wilson,K.H., Hills,H.G. and Zwadyk,P. TITLE Phylogeny of Francisella correlated with the epidemiology of tularemia JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26086|g498265 legacy_attribute= biovar:variety tularemia; live vaccine strain BASE COUNT 383 a 305 c 450 g 315 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------AG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUGGC- ----U----- 601 --(------- ---UUCG--- ---)------ ------G--| -GCUGU--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AG-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGC -UCUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UGA ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tularn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis str. lvs ATCC 6223. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis str. lvs ATCC 6223. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 6223 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21931 ATCC 6223 = FSC 155 = FSC 138 isolate_name= lvs biol_source= human BASE COUNT 399 a 318 c 470 g 334 t 2855 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------AG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUGGC- ----U----- 601 --(------- ---UUCG--- ---)------ ------G--| -CGUGU--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AG-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGC -UCUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- -G-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 -U-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAUG GUAGCCGUAG -(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis str. SCHU FSC 043. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis str. SCHU FSC 043. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21932 isolate_name= SCHU BASE COUNT 398 a 318 c 470 g 334 t 2856 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------AG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUGGC- ----U----- 601 --(------- ---UUCG--- ---)------ ------G--| -CGUGU--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-G--GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AG-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGC -UCUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- -G-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 -U-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAUG GUAGCCGUAG -(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.phmir2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella philomiragia. ACCESSION No information KEYWORDS No information. SOURCE Francisella philomiragia. ORGANISM Francisella philomiragia. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22891 (bases 1 to 224) CDC E6588 = FSC 154 geog_source= Switzerland biol_source= human BASE COUNT 128 a 94 c 151 g 102 t 3901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......AUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UAU-GAG( U----UAAUA -----G---) CUUG-UA-GG 1081 ---------- -------A-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GG...(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- --AGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAG-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.phmira 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella philomiragia. ACCESSION No information KEYWORDS No information. SOURCE Francisella philomiragia. ORGANISM Francisella philomiragia. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21933 ATCC 25017 = FSC 153 geog_source= USA biol_source= human BASE COUNT 400 a 313 c 468 g 337 t 2858 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~UUGA AGAGUU(--G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUG-G- ----C----- 601 --(------- ----UUA--- ---)------ ------G--| -CGUGC--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UAU-GAG( U----UAAUA -----G---) CUUG-UA-GG 1081 ---------- -------A-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----UG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AU-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGA -UCUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AA---| CGC-AG-UGA |---C|A--G 2161 -U-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAG-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAUG GUAGCCGUAG -(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.phmir4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella philomiragia. ACCESSION No information KEYWORDS No information. SOURCE Francisella philomiragia. ORGANISM Francisella philomiragia. REFERENCE 1 AUTHORS Wilson,K.H., Hills,H.G. and Zwadyk,P. TITLE Phylogeny of Francisella correlated with the epidemiology of tularemia JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26085|g498264 ATCC 25015 = FSC 144 geog_source= Utah, USA biol_source= muskrat BASE COUNT 379 a 295 c 444 g 316 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGU-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAU---U -UGAG-G-GG 421 -GAU-AC-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGUG-G- ----C----- 601 --(------- ----UUA--- ---)------ ------G--| -GCUGC--C- G--CAG---- 661 ----AUGG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UC-CA 781 U-AG-C-UG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UAU-AAG( U----UAAUA -----G---) CUUG-UA-GG 1081 ---------- -------A-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----UG G-UA-GAGGA AUG-G|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CAUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-UGG -AU-UC---- -G-------- 1681 -(GUG-UA)A A--------- ---------- ---------- -------GGA -UCUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUACU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GG-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAG-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-UU -A--A----- ---------- ---------- -----(---- -CGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.phmir3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella philomiragia. ACCESSION No information KEYWORDS No information. SOURCE Francisella philomiragia. ORGANISM Francisella philomiragia. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22901 (bases 1 to 230) ATCC 25015 = FSC 144 geog_source= Utah, USA biol_source= muskrat BASE COUNT 113 a 86 c 130 g 85 t 3962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GUUG-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UAU-AAG( U----UAAUA -----G---) CUUG-UA-GG 1081 ---------- -------A-A G-GUACGUU- A-CCC-A-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)G 2341 U--------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAG-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22897 (bases 1 to 261) biol_source= fox BASE COUNT 155 a 116 c 176 g 124 t 3805 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-G--GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA-----CG G-UA-GAGGA AUG-G|GGAA 1381 UU-U...... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.......U- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula21 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis str. Fx2. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis str. Fx2. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Clarridge,J.E.,III, Raich,T.J., Sjoested,A., Sandstroem,G., Darouiche,R.O., Shawar,R.M., Georghiou,P.R., Osting,C. and Vo,L. TITLE Characterization of two unusual clinically significant Francisella strains JOURNAL J. Clin. Microbiol. 34, 1995-2000 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X98068 (bases 1 to 206) isolate_name= Fx2 BASE COUNT 117 a 89 c 142 g 95 t 3933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G.......|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.UU--GAU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GA..... .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22905 (bases 1 to 244) geog_source= Nevada, USA biol_source= rabbit BASE COUNT 120 a 98 c 139 g 92 t 3927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......U-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- C......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22889 (bases 1 to 230) geog_source= Georgia, USA biol_source= squirrel BASE COUNT 129 a 100 c 153 g 101 t 3893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-G--GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C C.......(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis str. lvs ATCC 6223. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis str. lvs ATCC 6223. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 6223 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22913 (bases 1 to 249) ATCC 6223 = FSC 155 = FSC 138 isolate_name= lvs biol_source= human BASE COUNT 110 a 94 c 134 g 83 t 3955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-U. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22915 (bases 1 to 248) geog_source= Japan biol_source= human BASE COUNT 110 a 93 c 133 g 83 t 3957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)--CC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- --AGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-U. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22893 (bases 1 to 241) geog_source= Middle Asia, OSS biol_source= hare BASE COUNT 142 a 110 c 167 g 112 t 3845 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-AACUA-GA GUA....... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-G-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22911 (bases 1 to 225) geog_source= Sweden biol_source= human BASE COUNT 107 a 88 c 125 g 77 t 3979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22903 (bases 1 to 256) biol_source= city water supply BASE COUNT 131 a 106 c 160 g 107 t 3872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......U-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A.... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---..G--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA..... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22895 (bases 1 to 226) CCUG 17299 = FSC 146 geog_source= Sweden biol_source= human BASE COUNT 134 a 104 c 158 g 107 t 3873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CUC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-UAC-UG.. .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---..G--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-AA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22899 (bases 1 to 226) biol_source= hare BASE COUNT 125 a 98 c 148 g 97 t 3908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ...ACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-G--GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C C.......(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---..G--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22907 (bases 1 to 256) geog_source= Japan biol_source= human BASE COUNT 111 a 95 c 136 g 87 t 3947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......U-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---..G--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA..... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tular3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella novicida str. Utah 11 ATCC 15482. ACCESSION No information KEYWORDS No information. SOURCE Francisella novicida str. Utah 11 ATCC 15482. ORGANISM Francisella novicida. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15482 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22917 (bases 1 to 264) ATCC 15482 = FSC 040 isolate_name= Utah 11 NB: ATCC 15482 is Francisella tularensis var. novicida strain BASE COUNT 138 a 113 c 165 g 113 t 3847 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)--CC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- CUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-U....... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---AAG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- --AGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCG.... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fnc.tula15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Francisella tularensis. ACCESSION No information KEYWORDS No information. SOURCE Francisella tularensis. ORGANISM Francisella tularensis. REFERENCE 1 AUTHORS Forsman,M., Sandstrom,G. and Sjostedt,A. TITLE Analysis of 16S rDNA sequences of Francisella; their use for determination of the phylogeny of the genus and for identification of strains by the polymerase chain reaction JOURNAL Int. J. Syst. Bacteriol. 44, 38-46 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22909 (bases 1 to 250) biol_source= hare BASE COUNT 110 a 94 c 135 g 83 t 3954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-AU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GU-UG 1021 --GG-GAG-- GA-A-AG-CC --UCA-AGG( U----UAAUA -----G---) CCUU-GG-GG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AA........ .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---..G--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-UA-CU-C- U-AUU-GA-G A-CU-G-CCG --CU(-GA-C AA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -UA--CAGAG GGC-U-G-C- GA-AGG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-A CUCAA-AAAG -GU-A-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-U. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.7 LEGIONELLA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.7 LEGIONELLA_GROUP. ORGANISM 2.14.3.7 LEGIONELLA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.7.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.7.1 LEGIONELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.7.1 LEGIONELLA_SUBGROUP. ORGANISM 2.14.3.7.1 LEGIONELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.bozeGA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. WIGA NCTC 11368. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. WIGA NCTC 11368. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11368 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24646 (bases 1 to 125) NCTC 11368 = ATCC 33217 (T) isolate_name= WIGA BASE COUNT 101 a 80 c 114 g 84 t 3997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ....CAAU-- -G-GG-(UCA A)-CCC-UU- UCCA|--CAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-GG --)GN-UUGU ACA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GU-UU G-CNU-AGG( U----UAAGA -----G---) CUGG-GC-GA 1081 ---------- -------A-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... ...AAA-GC- GU-GGG-GA- 1561 GC-AAA-GA- -GN(AUUA-G AUAC)-CCN- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CN-NU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ....UU-C(G 2881 -NGA)CNNN- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.dumoff 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter dumoffii str. NY-23. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter dumoffii str. NY-23. ORGANISM Fluoribacter dumoffii. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24647 (bases 1 to 149) Former RDP Sids: Flu.dumo23 Leg.dumoff isolate_name= NY-23 NB: former name Fluoribacter -> Legionella -> Fluoribacter dumoffii BASE COUNT 122 a 90 c 129 g 90 t 3945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ...A-AAU-- -G-GG-(UCA A)-CCC-UUA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UG --NAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GN(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... AUGGG-U-GA -UA--C-GAG GAA---G-C- GA-AGG-G(G 2881 -UGA)CNNC- ---------- GA-GCUNA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.dumoKL 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter dumoffii str. Tex-KL ATCC 33343. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter dumoffii str. Tex-KL ATCC 33343. ORGANISM Fluoribacter dumoffii. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33343 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24650|g175162 (bases 1 to 112) isolate_name= Tex-KL BASE COUNT 107 a 82 c 114 g 82 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(UCA A)-CCC-UUA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CG G-AA--GAAG ---------C 1141 -ACCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-CU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .A-GCNNA-U CUUAG-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC--- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.gorman 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter gormanii str. LS-13 ATCC 33342 (T). ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter gormanii str. LS-13 ATCC 33342 (T). ORGANISM Fluoribacter gormanii. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33342 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24648 (bases 1 to 126) isolate_name= LS-13 BASE COUNT 103 a 81 c 116 g 81 t 3995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ...GG-(GCA A)-CCC-UUA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--U--AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --NAU-AGG( U----UAAGA -----G---) CUAG-UA-GN 1081 ---------- -------ACU G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUU-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-NU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .A-AGG-A(G 2881 -CGA)GUGC- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.dumof3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter dumoffii. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter dumoffii. ORGANISM Fluoribacter dumoffii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32637|g840794 Former RDP Sids: Leg.dumof3 NB: former name Legionella dumoffii BASE COUNT 370 a 301 c 451 g 296 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- --UUUUA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUCC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-- -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GA -UA--CAGAG GGA-A---C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.dumof2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter dumoffii str. NY-23 ATCC 33279. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter dumoffii str. NY-23 ATCC 33279. ORGANISM Fluoribacter dumoffii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33279 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73405 Former RDP Sids: Leg.dumof2 isolate_name= NY-23 NB: former name Legionella dumoffii BASE COUNT 377 a 309 c 465 g 302 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAYG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUUA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CAU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UA-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-AC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.gorman 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella gormanii. ACCESSION No information KEYWORDS No information. SOURCE Legionella gormanii. ORGANISM Legionella gormanii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32639|g840802 BASE COUNT 375 a 308 c 460 g 307 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(UUG A)U-CCU|-G 61 GCUCAG-AUU -GAA--GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --UAU-AGG( U----UAAGA -----G---) CUAG-UA-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG---UUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-CU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- -AGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-U G-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-- -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.wdswr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella wadsworthii. ACCESSION No information KEYWORDS No information. SOURCE Legionella wadsworthii. ORGANISM Legionella wadsworthii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49738|g1150489 BASE COUNT 373 a 315 c 471 g 313 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..AUCU-AUU --CGC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --UAU-AGG( U----UAAGA -----G---) CUAA-UA-AG 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -UA----GCU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-U---CUU- 2281 AG--UUGC-C AG-CCC---- ---------- ---------- ---G(---UA ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGG--U-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---ACGUC- GC........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.wdswrt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella wadsworthii. ACCESSION No information KEYWORDS No information. SOURCE Legionella wadsworthii. ORGANISM Legionella wadsworthii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73401 BASE COUNT 373 a 311 c 461 g 306 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-CC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-CU --UAU-AGG( U----UAAGA -----G---) CUAA-UA-AG 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CSAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- KU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-K-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GG-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.cherri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella cherrii. ACCESSION No information KEYWORDS No information. SOURCE Legionella cherrii. ORGANISM Legionella cherrii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73404 BASE COUNT 374 a 310 c 465 g 305 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-G-GG-CA --UUU-AGG( U----UAAGA -----G---) CUAG-AA-UG 1081 ---------- -------U-U G-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.cherr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. spg2 NCTC 11976. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. spg2 NCTC 11976. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11976 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49720|g1150450 isolate_name= spg2 BASE COUNT 354 a 297 c 435 g 282 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......CG- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- C(-GAAA-)C -UCAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UCAC)--G GAG-GC-AG- C-A---AG-U 901 GGG-AAUAUU G-GACCAA-- UG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-G-GA-CA --UUU-CGG( U----UAAGA -----G---) CUAG-AA-UG 1081 ---------- -------U-U G-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-AGC---- ---------- ---------- ---G(---UA ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----G-G|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-CGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-GGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -A--CC---- ---------- ---------- -----(---- --UCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.parisn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella parisiensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella parisiensis. ORGANISM Legionella parisiensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49731|g1150471 BASE COUNT 364 a 303 c 447 g 291 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GU-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-C-C 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UU-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -UA-CC---- ---------- ---------- -----(---- -UUCG....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.anisa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella anisa. ACCESSION No information KEYWORDS No information. SOURCE Legionella anisa. ORGANISM Legionella anisa. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73394 BASE COUNT 371 a 307 c 464 g 310 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCMA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----SAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-UC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-UGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.anisa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella anisa. ACCESSION No information KEYWORDS No information. SOURCE Legionella anisa. ORGANISM Legionella anisa. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32635|g840792 BASE COUNT 363 a 296 c 446 g 293 t 2978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UUG- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| CCUUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUCC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( -U-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-UGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-- -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GA---CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-C- -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.boze15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. MI-15. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. MI-15. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24649 (bases 1 to 127) isolate_name= MI-15 BASE COUNT 114 a 77 c 121 g 84 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ...ACAAU-- -G-GG-(NNA C)-CCU-UAU NCAA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A --AGAA-G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... ........A- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......GAG GA--A-G-C- GN-AGG-G(- 2881 -UGA)CNNN- ---------- NA-GCNNA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.bozema 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. WIGA NCTC 11368. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. WIGA NCTC 11368. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11368 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36031 Former RDP Sids: Leg.bozema NCTC 11368 = ATCC 33217 (T) isolate_name= WIGA NB: former name Legionella bozemanii BASE COUNT 356 a 305 c 442 g 277 t 2996 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNACUNA AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UR--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-NG (--CU..... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... ........G- AUG|-GC--G AGUG-GCGA- 361 -A-CC-GG-U GAGU---NAC -GC-GUAGG- A-A--URU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UUAA-G--C UWAUACC-GC 481 AU-NAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- --UNNUA--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUN---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUNA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-GACAAU-- GG-GG-(GGA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UYGU AAA--GCAC| UUNC-AG-UG 1021 --GG-GAG-- GA-G-GU-UY --GCU-AGG( U----NAAGA -----G---) CUAG-GC-GA 1081 ---------- -------A-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUNNA UC-GGAAUUA -CU-NGGC|G UNAA-GCGU- GCG-UAG-GU -G|-GU-NN- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UC-C CU-RGG-C(- UN-A)A-CCU -NG-G-CAG- 1321 -GUCA-GAUN A-UAC-UNGU N-NACUC-GA GUA-----UG G-GA-GAGGG URG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUNACA-CUG AG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------N|G -CU-RU-UGG -UG-AU---- ---------- 1681 -(GUG-AA)A ---------- ---------- ---------- -------AUC -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUWA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU NG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-R-GC-C NUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUN- ---------- GA-GCUNA-U CUNAG-AAAG -UY-G-UUC- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UG-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.bozem3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. Mi-15 sgp1 NCTC 11369. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11369 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49719|g1150449 Former RDP Sids: Leg.bozem3 isolate_name= Mi-15 sgp1 NB: former name Legionella bozemanii BASE COUNT 368 a 303 c 453 g 300 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........CU -CAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- --UAUUA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GAUGU C|C|C-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -UA----UUU 1981 -UGU-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-GGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flu.bozem2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fluoribacter bozemanae str. spg2 NCTC 11976. ACCESSION No information KEYWORDS No information. SOURCE Fluoribacter bozemanae str. spg2 NCTC 11976. ORGANISM Fluoribacter bozemanae. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11976 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49718|g1150448 Former RDP Sids: Leg.bozem2 isolate_name= spg2 NB: former name Legionella bozemanii BASE COUNT 364 a 300 c 457 g 297 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...G-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAA- 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- --UAUUA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU--)--CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -A-----UUU 1981 -UG--A--(- GAGA-)-UGC -A--UAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.gratia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella gratiana. ACCESSION No information KEYWORDS No information. SOURCE Legionella gratiana. ORGANISM Legionella gratiana. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49725|g1150459 BASE COUNT 367 a 299 c 445 g 289 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....GA--U AAAC-AUGCA A-GUC-GAAC 121 G--G--AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUUG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)G ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --CC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- C-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -UA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C A-)------- GG-------- ----AG---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-C-C---- ---------- ---------- ----(---GU ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.longbe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella longbeachae str. Long-Beach-4 NCTC 11477. ACCESSION No information KEYWORDS No information. SOURCE Legionella longbeachae str. Long-Beach-4 NCTC 11477. ORGANISM Legionella longbeachae. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11477 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36029 NCTC 11477 = ATCC 33462 (T) isolate_name= Long-Beach-4 BASE COUNT 365 a 310 c 454 g 283 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGA AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NGGUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-CCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--URU-G C-CUNA---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GN 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----AAAG-- AUU---A-|G CCUGN----- -GU|----CC G--AUYA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGG-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-GACAAU-- GG-GG-(GCA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UYGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UY --GAU-AGG( U----GNAGA -----G---) CUNA-UG-GA 1081 ---------- -------U-N N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUNA UC-GGAAUUA -CU-GGGC|G UNAA-GCGU- GCG-UAG-GU -G|-GU-UN- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UC-C CU-RGG-C(- UN-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUGACA-CUG AG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------NUR -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUWGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A YY-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UGA 1981 -UGC-A--(- GAGA-)-UGC -A-UYAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-R-GC-C NUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUN- ---------- GA-GCCAA-U CUUAG-AAAG -UY-G-UUC- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UG-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.stheln 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella sainthelensi. ACCESSION No information KEYWORDS No information. SOURCE Legionella sainthelensi. ORGANISM Legionella sainthelensi. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73399 BASE COUNT 373 a 311 c 460 g 307 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-CC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- RU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGK-U 3301 R......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.sthel2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella sainthelensi. ACCESSION No information KEYWORDS No information. SOURCE Legionella sainthelensi. ORGANISM Legionella sainthelensi. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49734|g1150475 BASE COUNT 370 a 291 c 450 g 294 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ........AA -UGC-UU--A ACAC-AUG-A A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -UU|-GC--G AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--G-AC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--UA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----ACU 1981 -UGC-A--(- GAGA-)-UGU -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-G--C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GA---CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- C---GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GG-ACCA -GAA-G-UAG 3121 A-UAG-U--- -AA-C----- ---------- ---------- -----(---- -AAGAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GU...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.cinci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella cincinnatiensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella cincinnatiensis. ORGANISM Legionella cincinnatiensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49721|g1150451 BASE COUNT 363 a 306 c 455 g 292 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-CG-- U-GC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 CG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUUU--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -A-------- -------UAU -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-C..... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.cincin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella cincinnatiensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella cincinnatiensis. ORGANISM Legionella cincinnatiensis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73407 BASE COUNT 369 a 310 c 470 g 305 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 CG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CCA--- 601 --(------- ----UUU--- ---)------ ----UGG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--UA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UR ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GG-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.stcruc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella santicrucis. ACCESSION No information KEYWORDS No information. SOURCE Legionella santicrucis. ORGANISM Legionella santicrucis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49735|g1150476 BASE COUNT 358 a 315 c 448 g 293 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... U-CC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAC-U-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 CG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUUU--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AC-CU-- -------A|G -CU-GU-UGG -AG-AUA--- ---------- 1681 -(-UG-UA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--UA---- --GC-(ACA- ---C)G-CG- AUAA-GAUGU C|C|C-CCU- G-GGGAGUGC 1801 GGU-C---(U CAA)---G-A UU-AAAACUC -UCA-GGAAU UG-UCGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGG -UUAAUU-CG -(AUACAA-C G)--CGCAGA 1921 A-CCUUA-CC UAC-CC-CUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UAC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CUUAG-AAAG -UC-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.steig2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella steigerwaltii. ACCESSION No information KEYWORDS No information. SOURCE Legionella steigerwaltii. ORGANISM Legionella steigerwaltii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49737|g1150488 BASE COUNT 375 a 308 c 454 g 298 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..UG-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ACUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-ACAA UUCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-CU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(ACA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-AAC---- ---------- ---------- ---G(---UA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.steigw 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella steigerwaltii. ACCESSION No information KEYWORDS No information. SOURCE Legionella steigerwaltii. ORGANISM Legionella steigerwaltii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73400 BASE COUNT 377 a 310 c 465 g 302 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UG- 1261 A-CU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UC-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.tucson 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella tucsonensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella tucsonensis. ORGANISM Legionella tucsonensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32644|g840808 NB: NCTC 124439 (?) BASE COUNT 376 a 304 c 470 g 302 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ACUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC--A- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GCC-AGG( U----UAAGA -----G---) CUAG-GU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UG- 1261 A-AU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUG A-UAC-UGUU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA--UG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AA--CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --G--(-AA- ---A)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCUAA-U CUUAG-AAAG -UU-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.lytica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella lytica str. LLAP-3 PCM 2298. ACCESSION No information KEYWORDS No information. SOURCE Legionella lytica str. LLAP-3 PCM 2298. ORGANISM Legionella lytica. REFERENCE 1 AUTHORS Springer,N., Ludwig,W., Drozanski,W., Amman,R. and Schleifer ,K.-H. TITLE The phylogenetic status of Sarcobium lyticum, an obligate intracellular bacterial parasite of small amoebae JOURNAL FEMS Microbiol. Lett. 96, 199-202 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66835|g434322 Former RDP Sids: Sar.lyticu legacy_attribute= source, W. Ludwig (6.2.93) isolate_name= LLAP-3 NB: former name Sarcobium lyticum BASE COUNT 402 a 331 c 485 g 316 t 2842 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GC-UU --GUU-AGG( U----UAAGA -----G---) CUAG-AU-AA 1081 ---------- -------G-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGCU G-AACUC-GA GUA-----UG G-GA-CAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCCAA-U CUUAC-AAAG -UC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UN~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella sp. str. LLAP-3. ACCESSION No information KEYWORDS No information. SOURCE Legionella sp. str. LLAP-3. ORGANISM Legionella sp. REFERENCE 1 AUTHORS Fry,N.K., Rowbotham,T.J., Saunders,N.A. and Embley,T.M. TITLE Direct amplification and sequencing of the 16S ribosomal DNA DNA of an intracellular Legionella species recovered by amoebal enrichment from the sputum of a patient with pneumonia JOURNAL FEMS Microbiol. Lett. 83, 165-168 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60080 isolate_name= LLAP-3 BASE COUNT 381 a 305 c 456 g 290 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GA-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GC-UU --GUU-AGG( U----UAAGA -----G---) CUAA-AU-AA 1081 ---------- -------G-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGCU G-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-AGA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCNAA-U CUUAG-AAAG -UC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GN-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UN-UA-UA .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.lytic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella lytica str. LLAP-3 PCM 2298. ACCESSION No information KEYWORDS No information. SOURCE Legionella lytica str. LLAP-3 PCM 2298. ORGANISM Legionella lytica. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49741|g1150463 isolate_name= LLAP-3 BASE COUNT 381 a 305 c 456 g 290 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCCGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GA-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GC-UU --GUU-AGG( U----UAAGA -----G---) CUAA-AU-AA 1081 ---------- -------G-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGCU G-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-AGA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAA--U CUUAG-AAAG -UC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GA--CCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.worsle 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella worsleiensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella worsleiensis. ORGANISM Legionella worsleiensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49739|g1150490 Former RDP Sids: Leg.worsli BASE COUNT 370 a 303 c 443 g 299 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----AC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-UGG( U----UAAGA -----G---) CUGA-UU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGGU U-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GAUGU C|C|C-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -ACA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CUUAG-AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAUC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.quater 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella quateirensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella quateirensis. ORGANISM Legionella quateirensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49732|g1150472 BASE COUNT 370 a 303 c 440 g 296 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A UCAC-AUGCA A-GUA-GAAU 121 G--GC-AG-C U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-AG (--CU----- ---------- ---------- 241 --------UG -)AU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UUG- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AUC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUUCC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------CU 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----AC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGGU U-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)U ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAUU-U CUUUU-AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UCCAUC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GUA-G-UAG 3121 A-GAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.shakes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella shakespearei. ACCESSION No information KEYWORDS No information. SOURCE Legionella shakespearei. ORGANISM Legionella shakespearei. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49736|g1150477 BASE COUNT 379 a 313 c 452 g 299 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AA-AC-- GUGC-GGC-A -UGC--U--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------CA 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----AC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UA --UUU-AUG( U----UAAGA -----G---) CUAG-AA-UA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-GU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGCA U-CACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -AU-AU---- ---------- 1681 -(AUG-AA)U ---------- ---------- ---------- -------AUA -UUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -ACA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----ACU 1981 -UGC-A--(- GAGA-)-UGU -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(U-AA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGC-A-G-C- GA-GGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAUU-U CUUUU-AAAG -UC-A-AUC- GU-GUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GUAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.moravi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella moravica. ACCESSION No information KEYWORDS No information. SOURCE Legionella moravica. ORGANISM Legionella moravica. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49729|g1150464 BASE COUNT 372 a 307 c 440 g 290 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..AC-AGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------CU 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCU-GG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----AC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AA---GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-GU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------C-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-UAC-UGGU U-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG ---------- ---------- 1681 -(CUU-UA)U A--------- ---------- ---------- ---------- --UUAG-UG- 1741 CG---A---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(-UGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -A-------U 1981 -UGC-A--(- GAGA-)-UGC -A----G--- UG-------- ---CC----- --(------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|--CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGU- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAU-U CUUUU-AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GUAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneumo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 33152 (T). ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 33152 (T). ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33152 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59157 ATCC 33152 (T) = NCTC 11192 isolate_name= Philadelphia 1 isolate_name= Philadelphia-1 BASE COUNT 388 a 320 c 475 g 318 t 2875 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUA A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- NCN-NGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneum6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC 33215. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC 33215. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33215 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73402 legacy_attribute= biovar:sgp6 isolate_name= Chicago 2 isolate_name= Chicago-2 BASE COUNT 371 a 309 c 468 g 306 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUA A-UAC-UGGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pne1E2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. fraseri str. Dallas-1E'' ATCC 33216. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. fraseri str. Dallas-1E'' ATCC 33216. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria: Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia as Tatlockia maceachernii comb. nov JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33216 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22265 isolate_name= Dallas-1E'' BASE COUNT 100 a 69 c 107 g 84 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|...AA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--U--AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUGA-UU-GA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-C ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .....A-GC- UU-GAG-CU- 1561 U----A-CA- -GG(AUUA-G AUUG)-ACA- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..U-- ---------- GA-GCAAA-U CCUUA-AAAG -UC-G-GUN- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneP12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 33152 (T). ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ATCC 33152 (T). ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria: Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia as Tatlockia maceachernii comb. nov JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33152 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22266 ATCC 33152 (T) = NCTC 11192 isolate_name= Philadelphia 1 isolate_name= Philadelphia-1 BASE COUNT 110 a 82 c 121 g 85 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .).......A UCAA|-GCAA U--C-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--NN-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-NU --NAU-AGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-C ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .....A-GC- UU-G-G-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UU-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|U|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .........C GUG--CUACN AUGGC-C-GA -UA--CAGAG GCC-G-G-C- GA-AGG-G(G 2881 -CGG)ACU-- ---------- GA-GCAAA-U CCUUA-AAAG -UC-G-GUA- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneuC2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC 33215. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Chicago 2 ATCC 33215. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33215 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22264 (bases 1 to 116) isolate_name= Chicago 2 isolate_name= Chicago-2 BASE COUNT 103 a 75 c 108 g 82 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ UCCA|-GCNA U--C-GC-GU 961 G-U-GU-G-A A-GAA--G-G -C(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AC-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....G-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... ........C- GA-GGG-C(C 2881 -UGA)C-U-- ---------- GA-GCAAA-U CCUUA-AAAG -UC-G-GUN- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneuK1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Knoxville-1 NCTC 11286. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Knoxville-1 NCTC 11286. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11286 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36024 isolate_name= Knoxville-1 BASE COUNT 369 a 309 c 455 g 280 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NGUCU-NG (--CU----- ---------- ---------- 241 --------NG -)CU-NGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|--C--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--URU-G C-CUNG---A -AGNG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UNCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUN---A-|G CCUGC----- -GU|----CC G--AUNA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UNGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --NAU-AGG( U----NAAGA -----G---) CUNA-UN-AA 1081 ---------- -------C-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UU-C CU-RGG-C(- UN-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUN A-UAC-UNGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU NG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UUR 1981 -UGC-A--(- GAGA-)-UGC -A-UAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-GC-C NUNAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCAAA-U CCUNA-AAAG -UC-G-GUY- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UN-UA-CC A-CGGU-G.. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneuP1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. pneumophila str. Philadelphia 1 NCTC 11192. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. pneumophila str. Philadelphia 1 NCTC 11192. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11192 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36023 NCTC 11192 = ATCC 33152 (T) isolate_name= Philadelphia 1 isolate_name= Philadelphia-1 BASE COUNT 372 a 312 c 452 g 284 t 2956 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NGUCU-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|--C--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUNG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UG 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUN---A-|G CCUGC----- -GU|----CC G--AUNA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --NAU-AGG( U----NAAGA -----G---) CUGA-UU-AA 1081 ---------- -------C-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UCAA-GGGU- GCG-UAG-GU -G|-GU-NN- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UU-C CU-RGG-C(- UN-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUN A-UAC-UNGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UUR 1981 -UGC-A--(- GAGA-)-UGC -A-UAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-GC-C NUNAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCAAA-U CCUNA-AAAG -UC-G-GUC- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UN-UA-CC A-CGGU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneu1E 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. fraseri str. Dallas-1E NCTC 11405. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. fraseri str. Dallas-1E NCTC 11405. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11405 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36026 isolate_name= Dallas-1E BASE COUNT 363 a 302 c 450 g 286 t 2975 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUN(G-G A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UGGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-NG (--CU----- ---------- ---------- 241 --------NG -)CU-NGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UUU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 UG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUNA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --NAU-AGG( U----UAAGA -----G---) CUGA-UN-RA 1081 ---------- -------U-G N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-RGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-UN- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UU-C CU-RGG-C(- UN-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUA A-UAC-UNGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------N|G -CU-RU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- R-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -GA----UNR 1981 -UGC-A--(- GAGA-)-UGC -A-UNAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-R-GC-C NUNAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCAAA-U CCUNA-AAAG -UC-G-GUY- GUNGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.pneum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella pneumophila subsp. fraseri str. Los Angeles 1 NCTC 11233. ACCESSION No information KEYWORDS No information. SOURCE Legionella pneumophila subsp. fraseri str. Los Angeles 1 NCTC 11233. ORGANISM Legionella pneumophila. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11233 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36025 NCTC 11233 = ATCC 33156 isolate_name= Los Angeles 1 BASE COUNT 362 a 304 c 449 g 280 t 2981 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUG(G-N A)U-CCU|-G 61 GCUCAG-AUG -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-NG (--CU----- ---------- ---------- 241 --------GG -)CU-NGACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--URU-G C-CUUG---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---RUC-(-- --------UN 541 NG-------- -)-GAU---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUN---A-|G CCUGC----- -GU|----CC G--AUNA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UYGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UN --NAU-AGG( U----AAAGA -----G---) CUNA-UN-NA 1081 ---------- -------U-N N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUNA UC-GGAAUUA -CU-RGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-UN- 1261 A-UU-AAG|U NAU---CUGU G-AAA-UU-C CU-RGG-C(- UN-A)A-CCU -GG-G-ACG- 1321 -GUCA-GAUN A-UAC-UNGU U-GACUC-GA GUA-----UG G-GA-GAGGG URG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -UU-AU---- ---------- 1681 -(AUG-AA)A ---------- ---------- ---------- -------AUA -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUGC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -GA----UUR 1981 -UGC-A--(- GAGA-)-UGC -A-UAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-R-GC-C NUNAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCAAA-U CCUNA-AAAG -UC-G-GUC- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.londin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella londiniensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella londiniensis. ORGANISM Legionella londiniensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49728|g1150462 BASE COUNT 356 a 299 c 448 g 290 t 2983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC--G-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UCU--G (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ----UA---- ---)------ -----GG--| -CCU-G--C- G--C------ 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-UGG( U----UAAGA -----G---) CUGA-UU-GA 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-AAG|U UAG---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GCUA A-GAC-UGUA U-GACUC-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CAU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUU--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAUU-U CUUGU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAUC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.micPPA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia micdadei str. PPA-JC. ACCESSION No information KEYWORDS No information. SOURCE Tatlockia micdadei str. PPA-JC. ORGANISM Tatlockia micdadei. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria: Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia as Tatlockia maceachernii comb. nov JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22260 isolate_name= PPA-JC BASE COUNT 75 a 55 c 81 g 59 t 4106 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....G-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... ....C-C-GU -GA--UAGAG GG--G-C-C- GA-AGG-G(A 2881 -AGA)CU--- ---------- GA-GCAAA-U CUUUG-AAAG -CN-N-GUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.micdTA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia micdadei str. TATLOCK ATCC 33218. ACCESSION No information KEYWORDS No information. SOURCE Tatlockia micdadei str. TATLOCK ATCC 33218. ORGANISM Tatlockia micdadei. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33218 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22261 (bases 1 to 164) ATCC 33218 = NCTC 11371 (T) isolate_name= TATLOCK BASE COUNT 118 a 85 c 130 g 93 t 3950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ....G-(GGA A)-CCC-NNA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UA-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-NU --NAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGG-U-N ACUCC-GU.( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... ....GG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .UUAC---GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACU UUGG--C-GG -UA--NAGAG GGC-G-G-C- GA-AGG-G(A 2881 -AGA)CU--- ---------- GA-GCAAA-U CUUUG-AAAG -CU-N-GUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.micd12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia micdadei str. VAMC-Pgh-12 ATCC 33346. ACCESSION No information KEYWORDS No information. SOURCE Tatlockia micdadei str. VAMC-Pgh-12 ATCC 33346. ORGANISM Tatlockia micdadei. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria. Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia, as Tatlockia maceacherni comb. nov. JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information REFERENCE 2 AUTHORS Fox,K. and Brown,A. TITLE Partial sequence analysis of the 16s-rRNA of Legionellae: Taxonomic implications JOURNAL Syst. Appl. Microbiol. 11, 135-139 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33346 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22263 (bases 1 to 156) isolate_name= VAMC-Pgh-12 BASE COUNT 116 a 86 c 124 g 92 t 3958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ....G-(GGA A)-CCC-UUA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-N-GG-NU --UAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... ....GG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... ..UAC-G-GG -UA--GGGC- 2821 U-ACC-CA-C GUG--CUAC- ----N-G--A -U-------G GGC-G-G-C- GA-AAG-G(G 2881 -AGA)CU--- ---------- GA-GCAAA-U CUUUG-AAAG -CN-N-GUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUN- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.micdad 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia micdadei str. TATLOCK NCTC 11371 (T). ACCESSION No information KEYWORDS No information. SOURCE Tatlockia micdadei str. TATLOCK NCTC 11371 (T). ORGANISM Tatlockia micdadei. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11371 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36032 Former RDP Sids: Leg.micdad NCTC 11371 (T) = ATCC 33218 isolate_name= TATLOCK NB: former name Legionella micdadei BASE COUNT 364 a 302 c 464 g 277 t 2969 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-NG (.-....... .......... .......... 241 .......... .).....AUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- A-A--UNU-G C-CUNN---A -AGUG-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GN 481 AU-NAG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCGA--- ---)------ -----GG-C| -CUGCG--C- G--CUN---- 661 ----NNAG-- AUN---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GG-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----NA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UNGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-NG-RU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUNA UC-GGAAUUA -CU-GGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-NN- 1261 N-AU-AAG|U NAU---CUGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -NG-G-GUG- 1321 -GUCA-GAUA A-GAC-UGUG A-GACUNNGA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------N|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGU -G-GAAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ----AG---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UY--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GYG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C NUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -AGA)CCUN- ---------- GA-GCAAA-U CUNUG-AAAG -CU-N-GUC- GUNGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUKCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UA-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.maceE2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia maceachernii str. PX-1-G2-E2 ATCC 35300 (T). ACCESSION No information KEYWORDS No information. SOURCE Tatlockia maceachernii str. PX-1-G2-E2 ATCC 35300 (T). ORGANISM Tatlockia maceachernii. REFERENCE 1 AUTHORS Fox,K.F., Brown,A., Fox,A. and Schnitzer,G. TITLE Tatlockia, a genetically and chemically distinct group of bacteria: Proposal to transfer Legionella maceachernii (Brenner, et al.) to the genus Tatlockia as Tatlockia maceachernii comb. nov JOURNAL Syst. Appl. Microbiol. 14, 52-56 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35300 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34714 (bases 1 to 150) ATCC 35300 (T) = NCTC 11982 isolate_name= PX-1-G2-E2 BASE COUNT 125 a 99 c 136 g 94 t 3922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ...ACAAU-- N--GG-(GCA A)-CCC-NUA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-AU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .CU--NA-UA CUGACA-CGU AG-G------ -----CACA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UC........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... ........CA AUGG--C-GG -UA--CAGA- GGC-G-G-C- GA-AGG-G(U 2881 --GA)CCU-- ---------- GA-GCAAA-U CUUUG-AAAG -CU-A-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.maceac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982. ACCESSION No information KEYWORDS No information. SOURCE Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982. ORGANISM Tatlockia maceachernii. REFERENCE 1 AUTHORS Fry,N.K., Harrison,T.G., Embley,T.M. and Saunders,N.A. TITLE Phylogeny of the family Legionellaceae JOURNAL Syst. Appl. Microbiol. in press (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11982 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60081 Former RDP Sids: Leg.maceac NCTC 11982 = ATCC 35300 (T) isolate_name= PX-1-G2-E2 NB: former name Legionella maceachernii BASE COUNT 371 a 301 c 471 g 304 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGUU-U-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GG 481 AU-GAG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CCA--- 601 --(------- ---UUUA--- ---)------ ----UGG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-AU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -AG-G-GUG- 1321 -GUCA-GAUA A-UAC-UGCU G-GACUAAGA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 NN-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ----AG---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UC ---AGA--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU ----G-G--C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CUUUG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GANN-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tat.macea2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982. ACCESSION No information KEYWORDS No information. SOURCE Tatlockia maceachernii str. PX-1-G2-E2 NCTC 11982. ORGANISM Tatlockia maceachernii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11982 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32641 Former RDP Sids: Leg.macea2 NCTC 11982 = ATCC 35300 (T) isolate_name= PX-1-G2-E2 NB: former name Legionella maceachernii BASE COUNT 371 a 301 c 471 g 304 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGUU-U-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GG 481 AU-GAG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CCA--- 601 --(------- ---UUUA--- ---)------ ----UGG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-AU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AU 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -AG-G-GUG- 1321 -GUCA-GAUA A-UAC-UGCU G-GACUAAGA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 AA-----CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- --GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUC 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ----AG---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UC ---AGA--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU ----G-G--C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CUUUG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GA---CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.feele3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella feeleii str. 691-WI-H NCTC 11978. ACCESSION No information KEYWORDS No information. SOURCE Legionella feeleii str. 691-WI-H NCTC 11978. ORGANISM Legionella feeleii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11978 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49740|g1150457 NCTC 11978 = ATCC 35849 isolate_name= 691-WI-H BASE COUNT 355 a 314 c 445 g 285 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- C(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----CAAG-- AUU---A-|C UCUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GC-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- GGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- -AG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A CCUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGCC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-ACG|U UAU---CUGU G-AAA-UC-C CC-GGA-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-GAC-UCGU U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-C UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG UG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGA -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-ACC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GCG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CUUUC-AAUG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UACACC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -U.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.donald 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella donaldsonii.. ACCESSION No information KEYWORDS No information. SOURCE Legionella donaldsonii. ORGANISM Legionella donaldsonii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49724|g1150452 BASE COUNT 359 a 309 c 456 g 289 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GG--A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----CAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-AAG|U UAA---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GUUA A-GAC-UGUA U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--CA---- --CC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGUAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 C-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-U CUUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UU......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.feelei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella feeleii str. WO-44C ATCC 35072 (T). ACCESSION No information KEYWORDS No information. SOURCE Legionella feeleii str. WO-44C ATCC 35072 (T). ORGANISM Legionella feeleii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35072 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73395 ATCC 35072 (T) = NCTC 12022 isolate_name= WO-44C BASE COUNT 366 a 314 c 470 g 296 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----CAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-SM-MG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-AAG|U UAA---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GUUA A-GAC-UGUA U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..KC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACA-CUG AG-G------ -------CA- C-GARA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUKGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-ACG-G(- 2881 -UGA)CGUG- ---------- GA-GCUAA-U CUUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UURUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.feele2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella feeleii str. 691-WI-H ATCC 35849. ACCESSION No information KEYWORDS No information. SOURCE Legionella feeleii str. 691-WI-H ATCC 35849. ORGANISM Legionella feeleii. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35849 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73406 ATCC 35849 = NCTC 11978 isolate_name= 691-WI-H BASE COUNT 368 a 316 c 472 g 296 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUG---A -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----CAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------U-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-AAG|U UAA---CUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GUUA A-GAC-UGUA U-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCC--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-ACG-G(- 2881 -UGA)CGUG- ---------- GA-GCUAA-U CUUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UURUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.lansng 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella lansingensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella lansingensis. ORGANISM Legionella lansingensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49727|g1150461 BASE COUNT 336 a 297 c 455 g 303 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...A-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AU-CU U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GCCAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GAUU-UU --GCU-UGU( U----UAUCA -----G---) CUGA-CU-AG 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-CA GAUG--AAAG ---------C 1141 -ACCGGCU-A CCUCC-GUG( CCA--GAAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCU-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U U-A---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-GUG- 1321 -GUCA-GUUA A-GAC-UGUU A-GGCUU-G- GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUU-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AGUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UG-UA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(ACA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UAC-A--(- GAGA-)-UGU -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AUG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGU- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAGAG GGG-A-G-C- GA-GGG-G(G 2881 -UGA)CCUG- ---------- GU-GCGAA-U CCUUA-AAAG -UU-A-GUC- GUAGCCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GUAU-CGG- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GUG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-A... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.frfldn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella fairfieldensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella fairfieldensis. ORGANISM Legionella fairfieldensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49722|g1150456 BASE COUNT 355 a 302 c 465 g 292 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GA-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-GGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GC 481 AU-GUA---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUAU--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-UGG( U----UAAGA -----G---) CUGA-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UG- 1261 U-AU-AAG|U UGU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GAUA A-GAC-UGUA U-GACUG-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--CA---- --GC-(ACA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AG---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGU- 2821 U-ACA-CA-C GUU--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- UA-AGG-G(G 2881 -CGA)CCUG- ---------- GU-GCGAA-U CUUU--AAAG -UC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.geesti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella geestiana. ACCESSION No information KEYWORDS No information. SOURCE Legionella geestiana. ORGANISM Legionella geestiana. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49723|g1150458 BASE COUNT 357 a 315 c 465 g 280 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...GU-AC-- UGGC-GGC-A -UGC-UA--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCC-AG (--UU----- ---------- ---------- 241 --------UA -)CU-GGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CCUG---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----CAGG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GC-UU --UAA-UGG( U----UAAGA -----G---) CUGU-UG-AA 1081 ---------- -------G-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 U-GU-AAG|U UAU---CUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAA- 1321 -GCCA-GAUA A-AAC-UACG A-GACUC-GA GUA-----CG G-GA-GAGGG CAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 CCU--GA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------G|G -CU-GU-UGG -CC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -GUUAG-UGG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUU--- -AA----UUG 1981 -AGC-A--(- GAGA-)-UGU -U-UGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----CA---| GAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---U(---UC ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- G-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUU--CUACA AUGGC-A-GG -UA--CAGAG GGA-A-G-C- GA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GC-AA-U CCCAA-AAAG -CC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UG -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.adelai 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella adelaidensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella adelaidensis. ORGANISM Legionella adelaidensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49716|g1150446 BASE COUNT 372 a 305 c 457 g 286 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-AC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---G -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UUC-(-- --------UA 541 UG-------- -)-GAA---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---AUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GA-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U UAG---CUGU G-AAA-UA-C CU-GGG-C(- UU-A)A-CCU -GG-G-CAG- 1321 -GUCA-GCUA A-GAC-UGGU A-GACUG-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-AUA--- ---------- 1681 -(-UG-UA)- ---------- ---------- -A-------- -------AUG -AUUAG-UGG 1741 CG--CA---- --CC-(ACA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(C CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UCU 1981 -GGC-A--(- GAGA-)-UGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGG-A-G-C- GA-AGG-A(G 2881 -UGA)UCUG- ---------- GA-GCGAA-U CUUAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GG-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.brmngh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella birminghamensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella birminghamensis. ORGANISM Legionella birminghamensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49717|g1150447 BASE COUNT 376 a 314 c 480 g 297 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GA-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---G -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 GU-ACG---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 CG-------- -)-GA----- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-AU-AAG|U UAA---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-CAG- 1321 -GUCA-GGUA U-GAC-UGUU A-GACUA-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -G-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-G- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GAAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.quinlv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella quinlivanii. ACCESSION No information KEYWORDS No information. SOURCE Legionella quinlivanii. ORGANISM Legionella quinlivanii. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49733|g1150473 BASE COUNT 360 a 323 c 470 g 289 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-G--- U-GC-GGG-A -UCC-UC--A CCAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------CG -)CU-AGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UAU-A C-CUUA---G -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAA---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GCCAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAC-AGG( U----UAAGA -----G---) CUAG-UU-AA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U UAA---CUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGG- 1321 -GUCA-GUUA A-GAC-UGUU G-GACUA-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --CC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGU -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GC-|G 2701 G-AU-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUU--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUA .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.oakrd2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella oakridgensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella oakridgensis. ORGANISM Legionella oakridgensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32642|g840806 BASE COUNT 354 a 303 c 468 g 292 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..UC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-U-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-GA----- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AGU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUU-GU-UG 1021 --GG-GAG-- GA-G-UC-UU --GUU-AGG( U-----AAGA -----G---) CUAG-AU-GA 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-GA--AAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -U|-GC-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GUG- 1321 -GUCA-GAUA A-GAC-UGGU U-AGCUG-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-UGG-GA- 1561 GC-GAC-AG- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-AUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GUG -AUUAG-UGG 1741 CG--UA---- --GC-(AAA- ---C)G-CG- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGU -G-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 --CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CCUUG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GA---CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-CGG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.oakrdg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella oakridgensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella oakridgensis. ORGANISM Legionella oakridgensis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73397 BASE COUNT 359 a 307 c 485 g 301 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGACU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-U-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AGU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-CG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUU-GU-UG 1021 --GG-GAG-- GA-G-UC-UU --GUU-AGG( U----UAAGA -----G---) CUAG-AU-GA 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-AA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -U|-GC-UG- 1261 A-UU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UC-A)A-CCU -GG-G-GUG- 1321 -GUCA-GAUA A-GAC-UGGU U-AGCUG-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-AUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GUG -AUUAG-UGG 1741 CG--UA---- --GC-(AAA- ---C)G-CG- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGU -G-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-CUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGM-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CCUUG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-CGG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UG-UC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.nautar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella nautarum. ACCESSION No information KEYWORDS No information. SOURCE Legionella nautarum. ORGANISM Legionella nautarum. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49730|g1150470 BASE COUNT 355 a 304 c 466 g 286 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AU- --AA------ UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----UGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UGAG-- AUU---A-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-GG-UG 1021 --GG-GAG-- GA-G-GA-AU --GUU-AGG( U----UAAGA -----G---) CUGA-CU-GU 1081 ---------- -------U-C U-GA-CGUC- A-CCC-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-UUG- 1321 -GUCA-GAUA A-GAC-UGCU G-AACUG-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CC-AUA--- ---------- 1681 -(-UA-GA)- ---------- ---------- -G-------- -------AUG -GUUAG-UGG 1741 CG---A---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGA -C-UGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-G-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAC-U CCUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1117 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1117. str. SBR1117. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1117. str. SBR1117. ORGANISM str. SBR1117. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84542|g871663 isolate_name= SBR1117 BASE COUNT 103 a 87 c 137 g 72 t 3977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGN-GGC-A -UGC-CU--G ACAC-AUGCA A-GUC-GAAC 121 G--GC-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GCAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1120 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1120. str. SBR1120. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1120. str. SBR1120. ORGANISM str. SBR1120. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84545|g871666 isolate_name= SBR1120 BASE COUNT 103 a 89 c 136 g 71 t 3977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UNGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GCAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AAU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UC-AG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.israel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella israelensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella israelensis. ORGANISM Legionella israelensis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73408 BASE COUNT 360 a 310 c 476 g 305 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-G-ACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UAU-G C-CUUA---G -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUAU--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-SC-MG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UAUC-GG-UG 1021 --GG-GAG-- GA-A-GU-UC --AGU-UGG( U----UAAGA -----G---) CUGA-CU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -AG-G-CUG- 1321 -GUCA-GAUA A-GAC-UGCU G-GACUG-GA GUA-----UA G-GA-GAGGG CAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CU-UU---- ---------- 1681 -(AUA-GA)G ---------- ---------- ---------- -------AAA -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CCUUA-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGGAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.israe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella israelensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella israelensis. ORGANISM Legionella israelensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32640|g840803 BASE COUNT 369 a 309 c 480 g 306 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAA- 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UAU-G C-CUUA---G -AGAG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUAU--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UAUC-GG-UG 1021 --GG-GAG-- GA-A-GU-UC --AGU-UGG( U----UAAGA -----G---) CUGA-CU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UU-C CU-GGG-C(- UU-A)A-CCU -AG-G-CUG- 1321 -GUCA-GAUA A-GAC-UGCU G-GACUG-GA GUA-----UA G-GA-GAGGG -AG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -CU-UU---- ---------- 1681 -(AUA-GA)G ---------- ---------- ---------- -------AAA -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GG-AGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAA- ---ACGGG-G -----CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -GA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-GUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CCUUA-AAAG -CU-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGGAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.spirit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella spiritensis str. Mt St Helens-9 NCTC 11990. ACCESSION No information KEYWORDS No information. SOURCE Legionella spiritensis str. Mt St Helens-9 NCTC 11990. ORGANISM Legionella spiritensis. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11990 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36030 NCTC 11990 = ATCC 35249 (T) isolate_name= Mt St Helens-9 BASE COUNT 368 a 318 c 457 g 274 t 2959 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGA AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-AUG -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NGUCC-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NNACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--URU-G C-CUNA---A -AGAG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -CCAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UN 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UYGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-NG-UY --GAG-UGG( U----GGAGA -----G---) CUAU-UN-GA 1081 ---------- -------C-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUNNA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-NN- 1261 G-GU-AAG|U NAA---CUGU G-AAA-GC-C CU-RGG-C(- UN-A)A-CCU -GG-G-AAU- 1321 -NGCA-GUUN A-GAC-UGUC G-AACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -CC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------NAG -GUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -UNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UGA 1981 -UGC-A--(- GAGA-)-UGC -G-UCAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-R-GC-C NUNAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- UA-GCAAA-U CCUNA-AAAG -CU-N-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UG-UA-CC A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.erythr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella erythra str. SE-32A-C8 NCTC 11977. ACCESSION No information KEYWORDS No information. SOURCE Legionella erythra str. SE-32A-C8 NCTC 11977. ORGANISM Legionella erythra. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11977 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36027|g840795 NCTC 11977 = ATCC 35303 (T) isolate_name= SE-32A-C8 BASE COUNT 346 a 306 c 454 g 270 t 3000 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-NG (--UN----- ---------- ---------- 241 --------NA -)CU-NGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--URU-G C-CUNA---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UNAA-G--C UNAUACC-GC 481 AU-NGA---- ---------- ---------- ---------- ---UCU-(-- --------CU 541 GA-------- -)-GGA---- ---------- ---GAGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----NAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUNG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-GACAAU-- GG-GG-(GGA N)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UYGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UY --GAC-AGG( U----GGAGA -----G---) CUNG-UR-GA 1081 ---------- -------C-U N-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUNNA UC-GGAAUUA -CU-RGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-UN- 1261 G-AU-AAG|U NAU---CUGU G-AAA-GC-C CU-RGG-C(- UN-A)A-CCU -GG-G-AAC- 1321 -UGCA-GAUN A-GAC-UGUU A-GACUC-GA GUA-----UG G-GA-GAGGG URG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNCCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------N|G -CU-RU-UGG -UC-UNA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUWA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----CCU 1981 -UUC-A--(- GAGA-)-UGA -G-AGGN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UN-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-R-GC-C NUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCCAA-U CUNNA-AAAG -CU-G-GUY- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.rubril 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella rubrilucens. ACCESSION No information KEYWORDS No information. SOURCE Legionella rubrilucens. ORGANISM Legionella rubrilucens. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73398 BASE COUNT 366 a 316 c 476 g 295 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAM-)C -UCAA-G--C UAAUACC-GC 481 AUAGAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-CG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAC-AGG( U----UAAGA -----G---) CUGG-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U UAU---CUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GAUA A-GAC-UGUU G-AACUC-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CCU 1981 -UUC-A--(- GAGA-)-UGA -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UG-AUA |---C|W--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CUUUA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.rubri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella rubrilucens. ACCESSION No information KEYWORDS No information. SOURCE Legionella rubrilucens. ORGANISM Legionella rubrilucens. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32643|g840807 BASE COUNT 372 a 314 c 475 g 295 t 2920 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-A C-CUUA---A -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AUAGAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----AGAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-GG-UU --GAC-AGG( U----UAAGA -----G---) CUGG-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U UAU---CUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-GAUA A-GAC-UGUU G-AACUC-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UG-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CCU 1981 -UUC-A--(- GAGA-)-UGA -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCCAA-U CUUUA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-G--- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.brunen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella brunensis.. ACCESSION No information KEYWORDS No information. SOURCE Legionella brunensis. ORGANISM Legionella brunensis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73403 BASE COUNT 378 a 304 c 461 g 312 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-U-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 AG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GUGG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U A-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-AU-AAG|U UAA---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUUA A-GAC-UGUU A-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CUUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.brune2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella brunensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella brunensis. ORGANISM Legionella brunensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32636|g840793 BASE COUNT 384 a 304 c 468 g 317 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-U-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 AG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GUGG-UU --GAU-AGG( U----UAAGA -----G---) CUAA-UU-GA 1081 ---------- -------U-U A-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-AU-AAG|U UAA---CUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-GUUA A-GAC-UGUU A-GACUC-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G --U-GU-UGG -U--A----- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GUG -AUUAG-UGG 1741 CG---A---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCAAA-U CUUUU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.hackel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella hackeliae str. Lansing-2 NCTC 11979. ACCESSION No information KEYWORDS No information. SOURCE Legionella hackeliae str. Lansing-2 NCTC 11979. ORGANISM Legionella hackeliae. REFERENCE 1 AUTHORS Fry,N.K., Warwick,S., Saunders,N.A. and Embley,M.T. TITLE The use of 16S ribosomal RNA analyses to investigate the phylogeny of the family Legionellaceae JOURNAL J. Gen. Microbiol. 137, 1215-1222 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11979 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M36028 NCTC 11979 = ATCC 35250 (T) isolate_name= Lansing-2 BASE COUNT 371 a 310 c 454 g 272 t 2969 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNA AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AUN -NAAC-GC-- UNGC-GGC-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GNNCU-NG (--CU----- ---------- ---------- 241 --------GG -)CU-NGGAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- A-A--URU-G C-CUUA---A -AGAG-G-GG 421 -GAC-AA-CC U--------- ------NG-- G(-GAAA-)C -UNAG-G--C UNAUACC-GC 481 AU-NAU---- ---------- ---------- ---------- ---UUC-(-- --------UG 541 AG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCUNG--C- G--CUN---- 661 ----AAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-GACAAU-- GG-GG-(GGA A)-CCC-URA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UNGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-AN-RA --GGU-UAG( G----UUAAG ----AG---) CUNG-AC-UN 1081 ---------- -------A-A G-GA-CG-C- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUNA UC-GGAAUUA -CU-GGGC|G UNAA-GGGU- GCG-UAG-GU -G|-GU-NN- 1261 A-AU-AAG|U NAG---UNGU G-AAA-UC-C CU-RGG-C(- UN-A)A-CCU -GG-G-AAU- 1321 -NGCA-NCUN A-GAC-UGUU A-GACUN-GA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 CCU--NA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-RU-UGG -UC-UNA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -NNNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UA|--- ---------C ---AGUG--- -AA----UGA 1981 -UGC-A--(- GAGA-)-UGC -A-UYAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-R-GC-C NUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUN- ---------- GA-GCAAA-U CCUNA-AAAG -CU-N-GUC- GUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUN-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UR-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.jamest 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella jamestowniensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella jamestowniensis. ORGANISM Legionella jamestowniensis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73409 BASE COUNT 373 a 305 c 464 g 309 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUUR--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NM-MG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GAUU-GA --GUU-AGG( U----UAAGA -----G---) CUAG-AC-UU 1081 ---------- -------G-A G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UAG---UUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-CCUA A-GAC-UGUU A-GACUU-GA GUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.james2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella jamestowniensis. ACCESSION No information KEYWORDS No information. SOURCE Legionella jamestowniensis. ORGANISM Legionella jamestowniensis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49726|g1150460 BASE COUNT 363 a 306 c 443 g 302 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .AGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-UCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 AG-------- -)-GAG---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GAC-GA- CGA------- -----UC-GG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-G-AU-UA --GUU-AGG( U----UAAGA -----G---) CUAG-AC-UU 1081 ---------- -------G-U G-GA-CGUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 A-GU-AAG|U UAG---UUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-CCUA A-GAC-UGUU A-GACUU-GA CUA-----UG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --CC-(ACA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----CUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-AGC---- ---------- ---------- ---A(---UG ---GAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----G-U|G 2701 G-UGCCU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-A-G-C- GA-GGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUUA-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAUC-U- C)-GACUCCA -UGAAGU-CG -GUAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA G--UG-GCU- UU-GC-ACCA -GAA-G-UUG 3121 U-UUG-U-CU -AA-CC---- ---------- ---------- -----(---- -U.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.jorda2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella jordanis. ACCESSION No information KEYWORDS No information. SOURCE Legionella jordanis. ORGANISM Legionella jordanis. REFERENCE 1 AUTHORS Hookey,J.V., Saunders,N.A., Fry,N.K., Birtles,R.J. and Harrison,T.G. TITLE Phylogeny of Legionellaceae based on small-subunit ribosomal DNA sequences and proposal of Legionella lytica comb. nov. for Legionella-like amoebal pathogens JOURNAL Int. J. Syst. Bacteriol. 46, 526-531 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z32667|g840804 BASE COUNT 380 a 310 c 466 g 304 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GACA ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GUGG-UU --AGA-AGG( U----UAAGA -----G---) CCAU-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAU---CUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-ACUA A-GAC-UGC- --AGCUUAGA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUCAAC-G C)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAA GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUAG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Leg.jordan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Legionella jordanis. ACCESSION No information KEYWORDS No information. SOURCE Legionella jordanis. ORGANISM Legionella jordanis. REFERENCE 1 AUTHORS Ross,T., Heidrich,B., Robinson,P.N., Fehrenbach,F.J. and Rolfs,A. TITLE Automated direct sequencing and characterization of Legionella by DNA amplification and restriction enzyme digestion JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73396 BASE COUNT 372 a 309 c 465 g 304 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UAU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---UUC-(-- --------UU 541 UG-------- -)-GAA---- ---------- ----AAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCUGG--C- G--CUU---- 661 ----UAAG-- AUU---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GWG-CC-MG- C-A---GU-G 901 GGG-AAUAUU G-GACAAY-- BG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAG-- GA-GUGG-UU --AGA-AGG( U----UAAGA -----G---) CCAU-UU-GA 1081 ---------- -------C-U G-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U UAG---UUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCG-ACUA A-GAC-UGCC A-GGCUUAGA GUA-----UA G-GA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU. .......(.. .....)..GC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- KU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UGG -UC-UUA--- ---------- 1681 -(-UA-AA)- ---------- ---------- -U-------- -------GAG -AUUAG-UGG 1741 CG--CA---- --GC-(AAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UA|--- ---------C ---AGUG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -A-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-K |-UC--CUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAA GGA-A-G-C- UA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCUAG-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.7.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.7.2 COXIELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.7.2 COXIELLA_SUBGROUP. ORGANISM 2.14.3.7.2 COXIELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cox.burnet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Coxiella burnetii str. Q177. ACCESSION No information KEYWORDS No information. SOURCE Coxiella burnetii str. Q177. ORGANISM Coxiella burnetii. REFERENCE 1 AUTHORS Mallavia,L.P., Baca,O., Mandelco,L., Sechrest,J.E., Weiss,E. and Woese,C.R. Weisburg,W.G., Dobson,M.E., Samuel,J.E., Dasch,G.A., TITLE Phylogenetic diversity of the Rickettsiae JOURNAL J. Bacteriol. 171, 4202-4206 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21291 isolate_name= Q177 BASE COUNT 369 a 330 c 461 g 311 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAUUGA AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UAGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--NCU---- ---------- ---------- 241 --------UN -)CU--CCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GCGAG AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-A C-CUUG---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GU 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--U- G--CUA---- 661 ----UAAG-- AUG---A-|G CCUAC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-GG-UG 1021 --GG-GAA-- GA-A-AU-UC --UCA-AGG( G----UAAUA -----U---) CCUN-GG-GC 1081 ---------- -------G-U U-GA-CGUU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACUGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-AGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U CGG---AUGU G-AAA-GC-C CU-GGG-C(- UN-N)N-CCU -GG-G-AAU- 1321 -UGCA-CCCG A-UAC-UGGG U-AUCUU-GA GUA-----UG G-UA-GAGGG AAN-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AGAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--C 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CU-GU-UGG -GA-AG---- ---------- 1681 -(-UU-CC)- ---------- ---------- ---------- -------CUU -CUUAG-UAG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GUC-A--(- GAGA-)-UGA -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -CU-G-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GAA- UU-GU-ACCA -GAA-G-CGG 3121 G-UAG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-C G-CU-CA-CC A-CGGU-AUG AUC-CA-NG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR145 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35468|g529990 BASE COUNT 285 a 205 c 305 g 227 t 3354 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A AUAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUUUA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UAAAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-GC--G AGUN-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUUA---A -UGUG-G-GG 421 -GAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GCUGGG- GA--UCAC-- 601 --(------- ---UUCG--- ---)------ ---GUGA--| -CCUGG--U- G--CAU---- 661 ----UAAG-- AUG---A-|G CCUGC----- -GU|----CA G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(G-A A)-CAG-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GU-GAG-- GA-A-AA-GC --ACG-AUA( U----UAAUA -----C---) CAUCAGU-GC 1081 ---------- -------C-U U-GA-CGUU- A-GCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( -CA--GCAGC CGCG-UA-A) U-A-C-AGAA |-GGGU-G-- 1201 CAG-CGUUA- UC--G-AUUA -CU-GGGC|G UAAA-GAGC- GUG-UAG-GU -G|-GA--A- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C UU-AGG-C(- UU-A)A-CCU -AA-G-AAC- 1321 -UGCA-UUUG A-UAC-UGAA U-AUCUA-GA GUA-----UG G-UA-GAGGA AAG-U|AGAA 1381 UU-UCCGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA---- -B-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--GA-CU-- -------A|G -GU-GU-CAG -GA-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCU -CUUGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)------ CK-AAAACUC -AAA-GGAAU UG-ACNNN-N -N-C-CC--G 1861 C-A--CA-AG S--UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UU|--- ---------U ---UUGG--- -AA----UCU 1981 -CUU-G--(- GAGA-)-CAA -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AU-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGUA- 2221 GG...(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8 METHYLOMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8 METHYLOMONAS_GROUP. ORGANISM 2.14.3.8 METHYLOMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8.1 MLM.METHANICA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8.1 MLM.METHANICA_SUBGROUP. ORGANISM 2.14.3.8.1 MLM.METHANICA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.album2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium album str. BG8. ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium album str. BG8. ORGANISM Methylomicrobium album. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95659 Former RDP Sids: Mlm.albus isolate_name= BG8 NB: former name Methylomonas albus nearly identical strain & cc#info but not same seq no CCdeposit info, seq equiv=ACM 3314; NCIMB 11123; IMET 10526 BASE COUNT 301 a 290 c 404 g 256 t 3125 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNNACUCA AGAGUU(U-N A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--UCU-N C-CNNU---U -AGUG-G-GG 421 -GNC-AA-CG U--------- ------GG-- G(-GNNA-)C -UCAC-G--C UWAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UN 541 AG-------- -)-GGG---- ---------- ----NNNA-- ---GC-GGG- SN--NN---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CNNNG--C- G--CUA---- 661 ----ACAG-- AUN---A-|G CCUGC----- -GU|----GG G--SUUA-G- CUA-G---UU 721 GG-UM-GG-( GU-NAA-GG) -C-CUACN-N N|-GGC-GA- CGA------- -----UC-CC 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|N-WC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCAA UNCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCNC| UUUU-AA-UC 1021 --GG-GAG-- GH-U-CA-UC --UGA-UGG( C----GAAUA -----C---) CCAU-CA-GU 1081 ---------- -------C-- U-GA-CAUU- A-CCG-A-UA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CSCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGU- VCG-URG-GC -V|-VC-NN- 1261 C-UN-NAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -GGCA-UUUG A-UAC-UGGG C-AGCNC-GA GUU-----GA G-UA-GAGGA GAG-G|GGNM 1381 UU-UCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GCGC- -CNCUCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-RAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -NC-UU---- ---------- 1681 -(AUU-CG)U ---------- ---------- ---------- -------AAG -AUUCG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUU.. .|.|.....U G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-DAAACUC -AAA-USAAU UG-ACGGG-G -G-S-NN--G 1861 C-A--CA-AG CGGBNG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-SC UAC-CC-UUG ACA-UC|--- ---------C ---ANAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNW|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGY AA-------- CGAG-C--GC UACCC-UU-A |-UC--CUU- 2281 AG--UUGC-Y AN-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|N 2701 N-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GHGG-N-AG 2761 G-UG-GGG-H CG-ACG--UY -H-AGUC-AU CNU-G-GC-C YUUAU-G-GG -UA--GGGC- 2821 U-ACA-CN-C GUG--CUACN AUGGC-C-GG -UA--CCGAG GGC-A-G-C- GA-ACU-N(G 2881 -CGA)GAGC- ---------- CA-GCNVA-U CCCAC-AAAG -CC-G-GNN- CUNGUCCGGR 2941 U-UGGAGUC- (UGCVAC-U- N)-GACUCCA -UGAAGU-CG -GAAU-CCC- -UAGUA-AUN 3001 GC-GAA-(UC -VGA-AU)-G U......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.agile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium agile str. A30 ACM 3308 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium agile str. A30 ACM 3308 (T). ORGANISM Methylomicrobium agile. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72767|g791065 ACM 3308 (T) = NCIMB 11124 = ATCC 35068 isolate_name= A30 BASE COUNT 369 a 339 c 460 g 297 t 2911 others ORIGIN 1 .......... .......... .......... ...NUACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGN- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUNG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -GCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-AA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-CA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAN UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UC- 1261 C-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUC-GA GUU-----GA G-UA-GAGGA GAG-G|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UC-UUU--- ---------- 1681 -(-AU-AA)- ---------- ---------- -A-------- -------GGU -UUUCG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCCAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.album 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium album str. VKM-BG8 ACM 3314 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium album str. VKM-BG8 ACM 3314 (T). ORGANISM Methylomicrobium album. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72777|g791066 ACM 3314 (T) = NCIMB 11123 = IMET 10526 isolate_name= VKM-BG8 NB: nearly identical strain & cc#info but not same seq BASE COUNT 370 a 330 c 457 g 296 t 2923 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-CA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUUN UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUC-GA GUU-----UA A-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -CC-UUU--- ---------- 1681 -(-AU-AA)- ---------- ---------- -A-------- -------GGU -UUUCG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCAAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.luteu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter luteus. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter luteus. ORGANISM Methylobacter luteus. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72772|g791072 ACM 3304 = NCIMB 11914 (T) = VKM 53B NB: Mbc.luteu2 & Mbc.luteus appear not to match; release both Mbc.luteu2 & Mbc.luteus appear not to match; both released BASE COUNT 377 a 324 c 457 g 301 t 2917 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUC---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AC-UA 1021 --GG-GAG-- GA-A-AA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-CA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUC-GA GUU-----UA A-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA GUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UC-UUA--- ---------- 1681 -(-UU-CA)- ---------- ---------- -U-------- -------AAG -AUUCG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCAAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-CA-CC A-CUUU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.whtbur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter whittenburyi. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter whittenburyi. ORGANISM Methylobacter whittenburyi. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72773|g791091 Former RDP Sids: Mlc.whtbur NB: former name Methylococcus whittenburyi BASE COUNT 376 a 326 c 460 g 300 t 2914 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-CA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUA-GA GUU-----UA A-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 ACA--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UC-UUA--- ---------- 1681 -(-UU-CG)- ---------- ---------- -U-------- -------AAG -AUUCG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- CA-GCCAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-CA-CC A-CUUU-GUG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.pelagi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium pelagicum. ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium pelagicum. ORGANISM Methylomicrobium pelagicum. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72775|g791087 ACM 3505 = NCIMB 2265 (T) BASE COUNT 383 a 322 c 453 g 307 t 2911 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- A(-GAAA-)U -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AA-AG --CGU-CGG( U----UAAUA -----G---) CUGA-UA-GC 1081 ---------- -------C-U U-AA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAN UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUU-GA GUU-----UA A-UA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UC-UUU--- ---------- 1681 -(-AU-UG)- ---------- ---------- -A-------- -------AGA -UUAAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCAAA-U CCCAA-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UAC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.pelag3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium pelagicum.. ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium pelagicum. ORGANISM Methylomicrobium pelagicum. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35540|g530888 Former RDP Sids: Mlm.pelag2 NB: former name Methylomonas pelagica BASE COUNT 352 a 290 c 425 g 277 t 3032 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-- 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UC----- ---------- ---------- 241 --------GG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- A(-GAAA-)U -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AA-AG --CGU-UGG( U----UAAUA -----G---) CUGA-UG--C 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- U--A)A-CCU -GG-G-AAC- 1321 -GGCA-UUUG A-UAC-UGGG U-AACUU-GA GUU-----UA G-GA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-GUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CU---- ---------- 1681 -(UUA-UU)A ---------- ---------- ---------- -------AGA -CUUAG-UGG 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-GG CGGUGG-AGC A-U-GUAGGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- CA-GCAAA-U CCCAG-AAAG -CC-G-GUC- CUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G U......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mmb.pelag2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomicrobium pelagicum.. ACCESSION No information KEYWORDS No information. SOURCE Methylomicrobium pelagicum. ORGANISM Methylomicrobium pelagicum. REFERENCE 1 AUTHORS Distel,D.L. and Cavanaugh,C.M. TITLE Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves JOURNAL J. Bacteriol. 176, 1932-1938 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05570|g460602 Former RDP Sids: Mlm.pelagi NB: seq. identical to L35540 Mullins et al. former name Methylomonas pelagica BASE COUNT 352 a 290 c 425 g 277 t 3032 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-- 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UC----- ---------- ---------- 241 --------GG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- A(-GAAA-)U -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-GAG-- GA-A-AA-AG --CGU-UGG( U----UAAUA -----G---) CUGA-UG--C 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- U--A)A-CCU -GG-G-AAC- 1321 -GGCA-UUUG A-UAC-UGGG U-AACUU-GA GUU-----UA G-GA-GAGGA GAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--AA-AA CUGACG-GUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CU---- ---------- 1681 -(UUA-UU)A ---------- ---------- ---------- -------AGA -CUUAG-UGG 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-GG CGGUGG-AGC A-U-GUAGGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUG-A--(- GAGA-)-UCG -U-AGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- CA-GCAAA-U CCCAG-AAAG -CC-G-GUC- CUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G U......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.rubra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas rubra str. VKM-15m NCIMB 11913. ACCESSION No information KEYWORDS No information. SOURCE Methylomonas rubra str. VKM-15m NCIMB 11913. ORGANISM Methylomonas rubra. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95662 NCIMB 11913 = ACM 3303 isolate_name= VKM-15m BASE COUNT 384 a 321 c 451 g 302 t 2918 others ORIGIN 1 .......... .......... .......... ....AACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--UG----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CNAU---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------GG-- G(-GAAA-)C -UCAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----UAAA-- ---GCUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CYUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CNACU-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-UA-CC --UAC-CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-UAC-UGGA U-GACUA-GA GUU-----GA G-UA-GAGGG GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CC-GU-UGG -GC-GC---- ---------- 1681 -(NUU-AA)- ---------- ---------- ---------- -------GUG -CUUAG-UGG 1741 UG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-----(G CAA)---G-G CU-AAAACUC -AAA-UGADU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------A ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-GU(UCAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-A-G-C- AA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAG-AAAG -CC-G-AUC- CUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CC-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CA---- ---------- ---------- -----(---- -AUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CC-UA-CC A-CUUU-GUG AUU-UA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas aurantiaca str. JB103 (phenon3) ACM 3406 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylomonas aurantiaca str. JB103 (phenon3) ACM 3406 (T). ORGANISM Methylomonas aurantiaca. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72776|g791067 isolate_name= JB103 (phenon3) BASE COUNT 376 a 315 c 460 g 314 t 2911 others ORIGIN 1 .......... .......... .......... ...NNACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-U AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUCGG- A-A--UCU-G C-CAUG---U -UGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UN-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C AGG)--GCCC -AGA-C-UCC -(UACU)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-UA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-GA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-CACUA-GA GUU-----GA G-UA-GAGGG GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GU-UA---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------GAA -CUUAG-UAG 1741 UG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -GA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-UA UAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AAC-C(G 2881 -UGA)GGUC- ---------- AA-GCAAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- GAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UA -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.fodinr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas fodinarum str. JB13 (phenon2) ACM 3268 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylomonas fodinarum str. JB13 (phenon2) ACM 3268 (T). ORGANISM Methylomonas fodinarum. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72778|g791071 isolate_name= JB13 (phenon2) BASE COUNT 380 a 316 c 453 g 308 t 2919 others ORIGIN 1 .......... .......... .......... .....ACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-NA-U AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUCGG- A-A--UCU-G C-CAUG---U -UGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UN-CN 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C AGG)--GCCC -AGA-C-UCC -(UACU)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-UA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-U U-GA-CAUU- A-CCU-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-GA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-CACUA-GA GUU-----GA G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GU-UA---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -CUUAG-UAG 1741 UG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-UA UAU-G-GC-C CUUAU-G-GG -AA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AAC-C(G 2881 -UGA)GGUC- ---------- AA-GCAAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UA -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.sp761 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas sp. str. 761 NCIMB 11931. ACCESSION No information KEYWORDS No information. SOURCE Methylomonas sp. str. 761 NCIMB 11931. ORGANISM Methylomonas sp. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20846 isolate_name= 761 BASE COUNT 355 a 312 c 407 g 298 t 3004 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-U AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU UUG|-AU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------GG-- G(-GAAA-)C -UCAC-G--C UAAUACU-GC 481 AU-CYG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 CG-------- -)-GUG---- ---------- ----AAAC-- ---CGACGG- GA--GC---- 601 --(------- ---UUCG--- ---)------ -----UG--| -CCUUG--C- G--CCU---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----GC A--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UG 1021 --GG-AAG-- GA-C-AC-CU --AU--CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-- U-GA-CAUU- A-CCC-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UG- 1261 U-UU-AAG|U CAG---AUGU G-AAA--C-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG C-AACUA-GA GUU-----GA G-UA-GAGGG GAG-U|GGAA 1381 UU-GCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACU--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GU-UC---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------GAG -CUUAG-UAC 1741 UG--GA---- --GC-(UA.. ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .........U -UUAAUU-CG -(AUNCAA-C G)--NGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----CUU 1981 -GUC-A--(- GAGA-)-UGA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC GGCCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|C 2701 G-AA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C NNN--CUACA AUGGU-A-CA -AA--CAGCA CGC-C-G-U- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCAAA-U ACCAC-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUU- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UAGG C--GU-GGG- UU-GC-AGAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUU-G-G U-CU-CA-CC A-CNNU-GUG AUU-CA-UG- ACU-GGGG-G 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.metha2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas methanica.. ACCESSION No information KEYWORDS No information. SOURCE Methylomonas methanica. ORGANISM Methylomonas methanica. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20840 BASE COUNT 337 a 276 c 407 g 282 t 3074 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)GG-GY--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------GG-- G(-GAAA-)C -UCAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---NCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----UAAA-- ---GCUGGG- GW--C----- 601 --(------- ---UUCG--- ---)------ -----GG--| -CYUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CNUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACU-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--G... .......... .(....)... .......... .......... 901 .GG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-KKA UCCA|-GCAA UGCC-GY-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GCDC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-UA--C --UGC-CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-- U-GA-CAUU- A-CCU-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-G ACUCY-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUMA UC-GGAAUUA -CU-GGGC|G UNAA-GCGU- GCG-UAG-GC -N|-NY-UG- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG C-AACUA-GA GUU-----UA G-UA-GAGGG GAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACU--RA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GU-UC---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -CUUAG-UAG 1741 CG--GA---- --GC-(UAA- ---C)G-UA. .......... .|.|...... .......... 1801 ........(. .AA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGUAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAC -C-GGAG--- YG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUN A)-AAUGU-U 2221 GG-G-(UUA. ...)...... .......... ...G-C--GC AACCC-UU-A |-UC--CNU- 2281 AG--UUGC-U AG-CGG---- ---------- ---------- ---U(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCAA-AAAG -CC-G-GUC- CCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CY UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -NAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-N G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACC-GGGG-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.metha1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas methanica str. S1 ATCC 35067 (T). ACCESSION No information KEYWORDS No information. SOURCE Methylomonas methanica str. S1 ATCC 35067 (T). ORGANISM Methylomonas methanica. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35067 (T) ATCC 35067 (T) = IMET 10543 = ACM 3307 = NCIMB 11130 isolate_name= S1 BASE COUNT 379 a 326 c 456 g 306 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------GG-- G(-GAAA-)C -UCAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GCUGGG- GN--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUGG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UA 1021 --GG-AAG-- GA-A-UA-CC --UGC-CGG( U----UAAUA -----C---) CCGG-UA-GA 1081 ---------- -------C-- U-GA-CAUU- A-CCU-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GN-UG- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG C-AACUA-GA GUU-----UA G-UA-GAGGG GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------UA- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|A -CU-GU-UGG -GU-UC---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -CUUAG-UAG 1741 UG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCAA-AAAG -CC-G-GUC- CCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NNN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8.2 MBC.LUTEUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8.2 MBC.LUTEUS_SUBGROUP. ORGANISM 2.14.3.8.2 MBC.LUTEUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.MAR2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Distel,D.L., Lee,H.K. and Cavanaugh,C.M. TITLE Intracellular coexistance of methano- and thioautotrophic bacteria in a hydrothermal vent mussel JOURNAL Proc. Natl. Acad. Sci. U.S.A. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29164|g903950 symbiont_of= unidentified mussel methanotrophic gill BASE COUNT 353 a 286 c 410 g 281 t 3046 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------GG-- U(-GAAA-)A -CCAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-CA --GGC-AGG( U----UAAUA -----U---) CCUG-UC-U- 1081 ---------- -------C-U U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAG- -GCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -GU-GGGC|G UAAA-GAGU- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UAC---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUA A-AAC-UGGC A-AACUC-GA GUU-----UA G-GA-GAGGG AAG-U|GGAA 1381 CU-UCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CUA--- ---------- 1681 -(-UU-UA)- ---------- ---------- -U-------- -------AGG -CUUAG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-- ---C-G---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-C-G-C- AA--C--C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCAG-AAAG -CC-G-AUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-G...(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.LSlope 4376 bp RNA RNA 02-JUL-1998 DEFINITION methanotrophic symbiont. ACCESSION No information KEYWORDS No information. SOURCE methanotrophic symbiont. ORGANISM methanotrophic symbiont. REFERENCE 1 AUTHORS Distel,D.L. and Cavanaugh,C.M. TITLE Independent phylogenetic origins of methanotrophic and chemoautotrophic bacterial endosymbioses in marine bivalves JOURNAL J. Bacteriol. 176, 1932-1938 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U05595|g460603 symbiont_of= methanotrophic symbiont of Louisiana Slope mussel gill BASE COUNT 357 a 285 c 411 g 286 t 3037 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------GG-- G(-GAAA-)C -CCAU-G--C UAAUACC-GC 481 AU-AUG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CU-G------ -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-CA --GGC-AGG( U----UAAUA -----U---) CCUG-UC-U- 1081 ---------- -------U-- U-GA-CGUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- UCG-UAG-GC -G|-GC-UG- 1261 U-UU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUA A-AAC-UGGA C-AGCUA-GA GUU-----UA G-GA-GAGGG AAG-U|GGAA 1381 UU-UCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-CU---- ---------- 1681 -(AUA-UA)C ---------- ---------- ---------- -------AGG -UUUAG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-C-G-C- AA---U-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCAG-AAAG -CC-G-AUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-G-A-(UC -AG....).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.sp.A4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas sp. str. A4 (M.Lidstrom). ACCESSION No information KEYWORDS No information. SOURCE Methylomonas sp. str. A4 (M.Lidstrom). ORGANISM Methylomonas sp. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95658 isolate_name= A4 (M.Lidstrom) BASE COUNT 355 a 306 c 452 g 290 t 2973 others ORIGIN 1 .......... .......... .......... ..NNAACUGA AGAGUU(U-G A)UYADC|-G 61 GCUCAG-AUU -GAAC-RC-- UGGC-GGU-A -UGC-UW--A ACAC-AUGCR A-GUMGAAGC 121 G--GU-AA-C DG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CY (--YH----- ---------- ---------- 241 --------GG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -N-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUNA---U -AGUG-G-GG 421 -GACGAA-CU U--------- ------GG-- G(-GNAA-)C -NMAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- -----C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NNAAN- ---HGGGNN- ----CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CNUNG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCURC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GN-NAA-GG) -C-CUACC-W N|-GGC-GW- MGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GA-C ----GA-U-- CAG-C|C-AC -ACUGG---A 841 (CUGA-GA-C ACG)--GCCN -R---C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GM-A-AA-CC --USS--GG( U----CAAUA -----C---) CCGG-CA-GC 1081 ---------- -------U-- U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-M ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G YHAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUA-GA GUCU----UA G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--AA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-NU---- ---------- 1681 -(UUU-AA)C ---------- ---------- ---------- -------AGG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|R|G-CCUU G-GGGNSUAC 1801 GGC-N---(G CAA)---G-G UU-AAAACUC -RRA-UGAAU UG-ACGGG-G -G-N-CNC-G 1861 C-A--CA--G CGGURR-NSN A-UNGGUKGU -UUWAUUACG -(AUGNAA-C G)--CGAA-A 1921 R-CCUUACNC UAC-YC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-RGAG--- UG-------- ---CU----- --(AA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUS-GR-AGA |---C|A--G 2161 GU-RC-URCA UG|G-CUG-- -CG-UCA|-G V-Y----G-U |GU-C(-GUG A)-GAUGU-A 2221 GG-U-(NUNA -GG)-SCCGU NN-------- CGAG-C--GC NNCSS-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CWC---- --G------- ---------- ---U(---GC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-MA-CU-C- U-AGG-GA-G A-CU-G-CMG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-NN-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-W-G-C- GA-ACN-C(G 2881 -CGA)GAGU- ---------- CA-GCAAA-U CCCAG-AAAC -CC-G-AUC- SUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUSCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGM-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UU-ACCA -GAA-G-UAG 3121 U-UAG-C-CU -AA-NN---- ---------- ---------- -----(---- -GGCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-Y K-AU-UA-CC A-CGGU-AGG AUU-CA-UG- ACNNGGGG-K 3301 G---AAGNC- NNNA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.luteus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter luteus. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter luteus. ORGANISM Methylobacter luteus. REFERENCE 1 AUTHORS Bratina,B.J., Brusseau,G.A. and Hanson,R.S. TITLE Use of 16S rRNA analysis to investigate phylogeny of methylotrophic bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 645-648 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95657 Former RDP Sids: Mlc.luteus NCIMB 11914 (T) = ACM 3304 = VKM 53B NB: former name Methylococcus luteus pro synon. Methylococcus bovis BASE COUNT 353 a 303 c 423 g 283 t 3014 others ORIGIN 1 .......... .......... .......... ......CUUG AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UC--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--U------ ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUCA---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- -----C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-CC --UAC-CGG( C---UGAAUA -----C---) CCGG-UA-G- 1081 ---------- -------C-U U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUA-GA GUU-----UA A-UC-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 AUU--AA-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-CU---- ---------- 1681 -(UUA-UA)C ---------- ---------- ---------- -------AGG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UUC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAC-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACU AUGGC-C-GG -UA--CUGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCAAA-U CCCAC-AAAG -CC-G-GCC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.capsul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter capsulatus. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter capsulatus. ORGANISM Methylobacter capsulatus. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20843 BASE COUNT 350 a 275 c 422 g 305 t 3024 others ORIGIN 1 .......... .......... .......... ....AACUGU AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CGCA---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GC-GGG- GG--AC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CUUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCU-GGA UCCA|-GCAA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-AG --)GG-UUGU AAA--GCAC| NUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-C- --UGC-CGG( C----UAAUA -----C---) CCGG-YA-GC 1081 ---------- -------U-- U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-UGUG-C-- 1201 UAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-UAC-UGGG U-AACUA-GA GUU-----UA G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-CU---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------CAG -GCUUA-GUG 1741 -G--CG---- --CA-(GAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-U---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-U-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUUNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGU AA-------- CGAG-U--GC UACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CUG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UA-GGG-N NG-ACG--UC -U-AGUC-AU CAU-G-GC-C UUUAU-U-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGY-A-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- UA-GCAAA-U CCCAG-AAAG -CC-U-GUC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGYG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.vinlan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter vinelandii str. 87. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter vinelandii str. 87. ORGANISM Methylobacter vinelandii. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20841 isolate_name= 87 BASE COUNT 345 a 284 c 423 g 306 t 3018 others ORIGIN 1 .......... .......... .......... .....ACUGC AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -N-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUCA---U -AGUG-G-GG 421 -GUC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GC-GGG- GG--AC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CUUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACU-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- UAG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACA)--G GAG-GC-AG- A-U---GU-G 901 GGU-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UNA UCCA|-GCAA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UN-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-CC --UGU-CGU( C-----AAUA -----C---) CCGG-UA-GC 1081 ---------- -------U-- U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-G ACUCC-GUG( CCA--GCUGC UGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUNA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-UAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-UAC- 1321 -UGCA-UUUG A-UNC-UGGG U-AACUA-GA GUU-----UA G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UAGAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 AUU---A-AA CUUACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-CU---- ---------- 1681 -(UUW-AA)- ---------- ---------- ---------- -------CAG -GUUUA-GUG 1741 -G--CG---- --CA-(GAA- ---C)G-CA- UUAA-GUUGA C|U|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--UA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- CCG-UCA|-C C-C---CG-U |GU-C(-AUG A)-GACGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- UA-GCAAA-U CCCAG-AAAG -CC-U-GUC- CUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbc.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylobacter bovis str. 89. ACCESSION No information KEYWORDS No information. SOURCE Methylobacter bovis str. 89. ORGANISM Methylobacter bovis. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20839 isolate_name= 89 BASE COUNT 349 a 277 c 423 g 311 t 3016 others ORIGIN 1 .......... .......... .......... .....ACUGC AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUCA---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GC-GGG- GG--AC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACU-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- UAG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACA)--G GAG-GU-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UC-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AA-C- --UAC-CGU( C-----AAUA -----C---) CCGG-UA-GC 1081 ---------- -------U-- U-GA-CAUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 UAG-CGUUUA UC-GGAAUUA -CU-GGGC|G UNAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-UAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-UNC-UGGG U-AACUA-GA GUU-----UA G-UA-GAGGA GAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 AUU--AA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GC-UU---- ---------- 1681 -(UUA-UA)- ---------- ---------- ---------- -------CAG -GUUUA-GUG 1741 -G--CG---- --CA-(GAA- ---C)G-CA- UUAA-GUUGA C|U|G-CCU- G-GGGAGUAC 1801 GGC-G---(G CAA)---G-G UU-AAAACUU -UAA-UGAAU UG-AUGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC UACCC-UU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UU -U-AGUC-AN NAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-A-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GUAAA-U CCCAC-AAAG -CC-N-GNC- UUNGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- U)-GACUCUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8.3 MLC.CAPSULATUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8.3 MLC.CAPSULATUS_SUBGROUP. ORGANISM 2.14.3.8.3 MLC.CAPSULATUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlm.methan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylomonas methanica str. 81Z. ACCESSION No information KEYWORDS No information. SOURCE Methylomonas methanica str. 81Z. ORGANISM Methylomonas methanica. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29022 isolate_name= 81Z BASE COUNT 319 a 284 c 385 g 253 t 3135 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAACUNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CN (--UC----- ---------- ---------- 241 --------CA -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|AAC--G AGUG-GCGG- 361 -A-CG-GG-U GAGUU--AAC UGC-GUAGG- A-A--UCU-R C-CUUR---U -UGUG-G-GG 421 -GAU-AA-CU M--------- ------GG-- G(-GAAA-)C -CCNA-G--C UAAUACC-G- 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------CA 541 CG-------- -)-GUG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CAA---- 661 ----UAAG-- AUG---A-|G CCUAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|N-AC -AUUGG-G-A 841 (CUGA-GA.. ...)...... .......... .(....)... .......... .......... 901 .GG-AAUAUU G-AACAAU-- GG-GC-(GCA A)AG-C-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GC(--UU-AG --)GN-UUGN AAA--GGUC| UUUC-RU-NA 1021 --GG-CAA-- GA-AGGA-AU A-CUR-CDG( U----UAAUA -----C---) CGGC-NG-AC 1081 ---------- -------U-V C-GA---UU- A-CCU-A-UA C-NA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC NGCGGUN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUNA UC-GGAAUUA -CU-GGGC|G NNAA-GCGU- GCG-UAG-GC -G|-GN-NV- 1261 A-GG-UCC|A CG----CGAU G-UAA-G--C CU-NGA-C(- CU-G)G-ACC -UC-G-GAAC 1321 -UGCC-UUUG A-UAC-UGGG U-AUCUU-GA GAC-----CG G-AA-GA-GA CAG-C|GGA- 1381 -C-UCGAGU- GUA-G-A(-G UCGAA)-UAC -GU-AGAU-A UC-GCA-AG- AACA-CCAG- 1441 -U-G-GC(-G A--A)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 UCC--AA-GA CUGACG-CUG AG-G------ -------UG- C-CNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -CU-GU-UGG -GC-UU---- ---------- 1681 -(-CU-UG)- ---------- ---------- ---------- -------GAC -UUCAG-UGG 1741 CG--GA---- --GC-(UAA- ---C)G-CU- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-G---(G CAA)---G-G CN-AAAACUN -AAA-UNAAU UG-ACGGG-G -G-C-AS--C 1861 C-C--CACAG CGGNUG-GAC C-U-UG-UGU -NNAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUNA-CC UAC-CC-UNG ACA-UC|--- ---------C ---ANAG--- -AA----UCU 1981 -NUU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-A-A |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -G.)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|G 2701 G-CA-CU-C- U-AC--GA-G A-CU-G-CCG --GU(-GC-A UA)-CGC-G- -GAGGCACAG 2761 G-U--CCC-A CG-ACG--UC -A-AGUC-AU AAU-G-G--C CUUAU-G-GG -UA--GGGC- 2821 U-ACA--A-C GUG--CUACA AUGGC-C-GU -GA--CAGAG GGA-A-G-G- GA-CAU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CCCA--AAAA -GC-G-GUC- UCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlc.capsu4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylococcus capsulatus str. Bath ACM 3302. ACCESSION No information KEYWORDS No information. SOURCE Methylococcus capsulatus str. Bath ACM 3302. ORGANISM Methylococcus capsulatus. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72771|g791069 ACM 3302 = IMET 10544 = NCIMB 11132 = ATCC 33009 isolate_name= Bath isolate_name= bath NB: many,many diffs between Mlc.capsu2 & Mlc.capsu4 BASE COUNT 362 a 336 c 482 g 292 t 2904 others ORIGIN 1 .......... .......... .......... ...NAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -UGUG-G-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUU-(-- --------AA 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UAAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GG-AAA-- GA-A-GG-GC --GGG-GGU( U----UAAUA -----C---) CAUG-CC-CA 1081 ---------- -------C-U U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGUC A-GGCUC-GA GUG-----UG A-UA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -CG-GG---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---AGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAG-U CCCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlc.capsu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylococcus capsulatus str. Texas ACM 1292. ACCESSION No information KEYWORDS No information. SOURCE Methylococcus capsulatus str. Texas ACM 1292. ORGANISM Methylococcus capsulatus. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72770|g791068 ACM 1292 = NCIMB 11853 (T) = ATCC 19069 isolate_name= Texas BASE COUNT 353 a 336 c 481 g 287 t 2919 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -UGUG-G-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------AG 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UAAG-- AUG---A-|G CCUAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GG-AAA-- GA-A-GG-GC --GGG-GGU( U----UAAUA -----C---) CAUG-CC-CA 1081 ---------- -------C-U U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG A-UAC-UGUC A-GGCUC-GA GUG-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCN(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -CG-GG---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------CCU -UUUAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---AGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAG-U CCCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlc.JB140 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylococcus sp. str. JB140. ACCESSION No information KEYWORDS No information. SOURCE Methylococcus sp. str. JB140. ORGANISM Methylococcus sp. REFERENCE 1 AUTHORS Bowman,J.P., Sly,L.I. and Stackebrandt,E. TITLE The phylogenetic position of the family Methylococcaceae JOURNAL Int. J. Syst. Bacteriol. 45, 182-185 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72769|g791088 isolate_name= JB140 BASE COUNT 362 a 339 c 467 g 298 t 2910 others ORIGIN 1 .......... .......... .......... ...NAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -UGUG-G-GG 421 -GAU-AA-CU C--------- ------UG-- G(-GAAA-)C -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------AG 541 CG-------- -)-GAU---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UAAG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GG-AAA-- GA-A-GG-GC --GGG-CGU( U----UAAUA -----C---) CCUG-CA-CA 1081 ---------- -------C-U U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-UAC-UGGC A-GGCUC-GA GUU-----UA A-UA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -CC-GG---- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- -------CCC -UUUAG-UGG 1741 CG--CA---- ---C-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-CC-UUG ACA-UG|--- ---------C ---ACUG--- -UA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ----(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CU-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- NA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCAG-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUC- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlc.capsul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylococcus capsulatus str. BATH. ACCESSION No information KEYWORDS No information. SOURCE Methylococcus capsulatus str. BATH. ORGANISM Methylococcus capsulatus. REFERENCE 1 AUTHORS Tsuji,K., Tsien,H.C., Hanson,R.S., DePalma,S.R., Scholtz,R. and LaRoche,S. TITLE 16S ribosomal RNA sequence analysis for determination of phylogenetic relationship among methylotrophs JOURNAL J. Gen. Microbiol. 136, 1-10 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29023 isolate_name= BATH BASE COUNT 305 a 275 c 364 g 250 t 3182 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~ACCVG AGAG-U(C-G A)--CCU|-G 61 GCUCAG-AUC -GAAC-GC-- UGGC-GGC-A -UGC-N---A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-CN (--UC----- ---------- ---------- 241 --------CA -)GG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|--C--G AGUG-GCGG- 361 -A-CG-GG-U GAGUU--AAU -GC-GUAGG- A-A--UCU-R C-CUUG---U -UGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -CCRA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------CA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CAA---- 661 ----UAAG-- AUG---A-|G CCUAC----- -GU|----CG G--AUUA-G- CUA-G---NU 721 NG-UG-GG-( GU-NAA-GG) -C-CNACC-A A|-CGC-GA- CGA------- -----UC-CN 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUNC-N-A 841 (CUGA-GA-G ACG)--AUCC -AGN-C-UC- -(UAC-)--G GAG-GC-AG- C-A---GU-G 901 -GG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A G-AGA--A-G GC(--UN-CG --)GG-UUGU NAA--GCAC| UUUA-AG-CA 1021 --GG-GAA-- GA-A-GG-GU --GGG-GUG( U----UAAUA -----C---) CAUC-UC-AC 1081 ---------- -------A-U U-GA-CGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A GCUCG-GUG( CCA--GCAGC -GC-GUA-A) U-A-C--GAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GC-C- ACG-UUA-UC -A|-NU-UU- 1261 C-AU-AAG|U CUC----RAU G-UVA-A--C CU-NGG-C(- NN-A)A-CMU -MN-N-AAC- 1321 -N--C-AUAN A-UAC-UCGC U-AUCUA-G- ---------- G-UA-G---- ----U|GGA- 1381 U--UCGAGU- GUA-G-A(-G UGCAA)-UGC -GU-AGAG-A UC-CG--AG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GCGG- -CUCCUUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(A-UA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AG-GG---- ---------- 1681 -(GUU-NA)A ---------- ---------- ---------- -------CCN -NUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC UAAA-UGAAU UGUACGGG-G -----CC--G 1861 C-AC-UA-AG CGGGGA-GUC A-U-GU-NGA UUUAAUU-CG -(AU-NAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGG---- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-AC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -UU)-AGC.. .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... CUUAU-G-GC UUA--GGGC- 2821 U-WCG----- -----CUACA GA-GC-U-GG -UA--CAGUG GGU-G-A-C- GU-AGC-C(G 2881 -UCA)GGGUU GGUAGCCUAA GA-GCUAA-U CUCC--AGAA -A--G-CUC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CUG-CGGUN- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlc.capsu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylococcus capsulatus str. Bath ATCC 33009. ACCESSION No information KEYWORDS No information. SOURCE Methylococcus capsulatus str. Bath ATCC 33009. ORGANISM Methylococcus capsulatus. REFERENCE 1 AUTHORS Brusseau,G.A., Bulygina,E.S. and Hanson,R.S. TITLE Phylogenetic analysis and development of probes for differentiating methylotrophic Bacteria JOURNAL Appl. Environ. Microbiol. 60, 626-636 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33009 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20842 ATCC 33009 = IMET 10544 = NCIMB 11132 = ACM 3302 isolate_name= Bath isolate_name= bath NB: many,many diffs between Mlc.capsu2 & Mlc.capsu4 BASE COUNT 353 a 305 c 470 g 299 t 2949 others ORIGIN 1 .......... .......... .......... .....ACUGU AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G--C (--UU----- ---------- ---------- 241 --------CG -)GG-Y---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -UGUG-G-GG 421 -GAU-AA-CU Y--------- ------GG-- G(-GAAA-)C -CUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------CA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CAA---- 661 ----UAAG-- AUG---A-|G CCUAC----- -GU|----CG G--AUUA-G- CUN-G---NU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACU-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCY -AGA-C-UCC -(UACG)--G GAG-GY-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NNA UCCA|-GCAA UGCY-GU-GU 961 G-U-GU-G-A A-GAA--G-G Y-(--UU-CG --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GG-AAA-- GA-A-GG-GU --GGG-GUG( U----UAAUA -----C---) CAUC-UC-AC 1081 ---------- -------A-U U-GA-CGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCY-R ACUCC-GUG( CCA--GCAGC YNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -N|-NN-UU- 1261 G-AU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- NU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG A-UAC-UGGC N-NNCUC-GA GUG-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCAGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGG- -YUWCCUG-- ---------- ---------- ---------G 1501 ACY--AA-CA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AG-GG---- ---------- 1681 -(GGU-UA)A ---------- ---------- ---------- -------CCN -NUUAG-UGG 1741 CG--CA---- --SS-(-AA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-AUGGG-G -G-C--Y--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CY-UUG ACA-UG|--- ---------C ---UUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGG---- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGU AA-------- CGAG-C--GC UACCU-UU-G |-UC--CUU- 2281 AG--UUGC-U AG-CNN---- ---------- ---------- ----(---NU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|G 2701 N-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C YUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--YUACA AUGGC-C-GG -UA--CAGAG GGU-A-G-C- NA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAG -CC-G-GNC- UUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CY UUGUA----C 3061 ACACUGCYC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -NNN-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s30 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s30. str. s30. ACCESSION No information KEYWORDS No information. SOURCE str. s30. str. s30. ORGANISM str. s30. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69334|g1181118 isolate_name= s30 BASE COUNT 86 a 63 c 118 g 67 t 4042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAA....... ..G-UAG-GC -G|-GC-UU- 1261 G-GU-CAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUGG A-AAC-UGCC G-AGCUA-GA GUG-----UG G-GA-GAGGG GUG-U|GGAA 1381 UU-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UU-UC---- ---------- 1681 -(AAU-UG)A ---------- ---------- ---------- -------GGA -AUCAG-UGG 1741 CG--CA---- --SU-(-AA- ---C)G-CG- AUAA-GUUGA .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G44 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G44.. ACCESSION No information KEYWORDS No information. SOURCE clone G44. ORGANISM clone G44. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91296|g987044 BASE COUNT 91 a 66 c 109 g 66 t 4044 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGCA|. .......... ....UAG-GC -A|GGC-UU- 1261 G-GU-CAG|U CUG---AUGU G-AAA-AC-C CU-UAG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UUGG A-AAC-UGCC G-AGCUA-GA GUG-----UG G-AA-GAGGG GUG-U|GGAA 1381 UU-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GAAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNG- -CACNNNUG- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -UU-UC---- ---------- 1681 -(AAU-UG)A ---------- ---------- ---------- -------GGA -AUCAG-UGG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- AUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mca.szeged 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocaldum szegediense str. OR2. ACCESSION No information KEYWORDS No information. SOURCE Methylocaldum szegediense str. OR2. ORGANISM Methylocaldum szegediense. REFERENCE 1 AUTHORS Bodrossy,L., Holmes,E.M., Holmes,A.J., Kovacs,K.L. and Murrell,J.C. TITLE Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov JOURNAL Arch. Microbiol. 168 (6), 493-503 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U89300 isolate_name= OR2 BASE COUNT 360 a 345 c 496 g 289 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGCC-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AA-CC C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --GG-GAA-- GA-A-AG-GC --GGG-AGG( C----UAAUA -----C---) CCUC-UU-GC 1081 ---------- -------A-C U-GA-CGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---CUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-GUUG A-UAC-UGGC G-AGCUU-GA GUG-----UG G-UA-GAGGG KUG-U|GGAA 1381 UU-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GC-AC---- ---------- 1681 -(AAU-UG)A ---------- ---------- ---------- -------GUG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUCA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------U ---GGGG--- -AA----CCC 1981 -UUG-A--(- GAGA-)-UCG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCC-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CG----- ---------- ---------- ---U(---AA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGCAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGGUG 3301 ----AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mca.tepidu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocaldum tepidum str. LK6. ACCESSION No information KEYWORDS No information. SOURCE Methylocaldum tepidum str. LK6. ORGANISM Methylocaldum tepidum. REFERENCE 1 AUTHORS Bodrossy,L., Holmes,E.M., Holmes,A.J., Kovacs,K.L. and Murrell,J.C. TITLE Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov JOURNAL Arch. Microbiol. 168 (6), 493-503 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U89297|g2911788 isolate_name= LK6 BASE COUNT 358 a 339 c 493 g 298 t 2888 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGCC-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GG-GAA-- GA-A-AA-GU --GGG-GGG( C----UAAUA -----C---) CCUC-UC-GC 1081 ---------- -------G-U U-GA-AGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---CUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGUA-GUUG A-UAC-UGGC A-GGCUA-GA GUG-----UG G-UA-GAGGG GUG-U|GGAA 1381 UU-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GC-AC---- ---------- 1681 -(AAU-UG)A ---------- ---------- ---------- -------GUG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUCU C|C|N-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---CGGG--- -AA----CCC 1981 -UUG-A--(- GAGA-)-UCG -A-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCC-GA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CG----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGGG GGU-A-G-C- CA-AGC-C(G 2881 -UGA)GCNG- ---------- GA-GCCAA-U CUCAC-AAAG -CC-G-AUN- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UCCC U--GU-GGG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGGUG 3301 ----AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mca.gracil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Methylocaldum gracile str. VKM-14L. ACCESSION No information KEYWORDS No information. SOURCE Methylocaldum gracile str. VKM-14L. ORGANISM Methylocaldum gracile. REFERENCE 1 AUTHORS Bodrossy,L., Holmes,E.M., Holmes,A.J., Kovacs,K.L. and Murrell,J.C. TITLE Analysis of 16S rRNA and methane monooxygenase gene sequences reveals a novel group of thermotolerant and thermophilic methanotrophs, Methylocaldum gen. nov JOURNAL Arch. Microbiol. 168 (6), 493-503 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U89298|g2911785 isolate_name= VKM-14L BASE COUNT 357 a 344 c 491 g 293 t 2891 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGCC-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-GUAGG- A-A--UCU-G C-CUUG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGG-G--C UAAUGCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----UGAG-- AUG---A-|G CCUAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CNA------- -----UC-GG 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -MCUGG-A-A 841 (CUGA-NA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-C CC(--UG-CG --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GG-GAA-- GA-A-AG-GU --GGG-GUG( U----UAAUA -----C---) CAUC-UC-AC 1081 ---------- -------A-U U-GA-CGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---CUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-GUUG A-UAC-UGGC G-AGCUA-GA GUG-----UG G-UA-GAGGG GUG-U|GGAA 1381 UU-UCCGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -CC-GU-UGG -GC-AC---- ---------- 1681 -(AAU-CG)A ---------- ---------- ---------- -------GUG -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UG|--- ---------U ---CGCG--- -AA----CCC 1981 -UUG-A--(- GAGA-)-UCG -A-GGGG--- CG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CG----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-A-G-C- CA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCCAA-U CUCAC-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUG-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-CAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UG-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGGUG 3301 ----AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8.4 UNNAMED_GAMMA_ISOLATES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8.4 UNNAMED_GAMMA_ISOLATES. ORGANISM 2.14.3.8.4 UNNAMED_GAMMA_ISOLATES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.KI89B 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. KI89B. str. KI89B. ACCESSION No information KEYWORDS No information. SOURCE str. KI89B. str. KI89B. ORGANISM str. KI89B. REFERENCE 1 AUTHORS Yoshinaga,I., Katanozaka,N., Chono,H. and Ishida,Y. TITLE Isolation of marine obligate oligotrophs and their growth characteristics JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32220|g728493 (bases 1 to 336) isolate_name= KI89B BASE COUNT 93 a 74 c 105 g 64 t 4040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGUA A-GUC-GAAC 121 G--AG-AA-A G--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-AC (--UCCG--- ---------- ---------- 241 -------CCU -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AAU|-AC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UUAG-- AGG---A-|G UCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-GCCAAU-- GG-GCU(GAA A)-GCC-UGA CCCA|-GCG. .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.gamma2 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Yoshinaga,I., Katanozaka,N., Chono,H. and Ishida,Y. TITLE Isolation of marine obligate oligotrophs and their growth characteristics JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32221|g728494 legacy_attribute= biovar:unnamed gamma purple bacterium BASE COUNT 114 a 99 c 127 g 90 t 3946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .UAC-AUGCA U-GUC-GAAC 121 G--AG-AAA- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GAG|-UA--C AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUAGG- A-A--UCUAC C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- C--CUA---- 661 ----UUAG-- AGG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-A---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAC-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-CC-AG- C-A---GU-A 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA UGCC--C-GU 961 G-U-GC-G-A A-GAA--G-U CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GC-GAA-- GA-U-UA-AC -CUGC-GGU( U----UAAUA -----C---) GCCG-CG-GU 1081 ---------- -------C-U U-GA-CGUU- A-AC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.KI89C 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. KI89C. str. KI89C. ACCESSION No information KEYWORDS No information. SOURCE str. KI89C. str. KI89C. ORGANISM str. KI89C. REFERENCE 1 AUTHORS Yoshinaga,I., Katanozaka,N., Chono,H. and Ishida,Y. TITLE Isolation of marine obligate oligotrophs and their growth characteristics JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D32219|g728492 isolate_name= KI89C BASE COUNT 117 a 93 c 133 g 87 t 3946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... AUAC-AUGCA U-GUC-GAAC 121 G--AG-AA-A G--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-AC (--UUC---- ---------- ---------- 241 -------GGC -)GU-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AGU|-AC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACC---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UUAG-- AGG---A-|G CCUGC----- -GU|----UA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCGA UGCC-GC-GU 961 G-U-GC-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GC-GAA-- GA-U-AA-GC --UAC-GAC( U----UAAUA -----C---) GUCG-UG-GU 1081 ---------- -------C-U U-GA-CGAU- A-AC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.8.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.8.5 SYM.HTHSVI_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.8.5 SYM.HTHSVI_ISOLATE. ORGANISM 2.14.3.8.5 SYM.HTHSVI_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Hthsvi 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Krueger,C.M., Degrugillier,M.E. and Narang,S.K. TITLE Size difference among 16S rRNA genes from endosymbiotic bacteria fo und in testes of Heliothis virescens, H. subflexa, (LEPIDOPTERA: NOCTUIDAE) and backcross sterile male moths JOURNAL Fl. Entomologist 76, 382-390 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22481 endosymbiont_of= Heliothis virescens testis BASE COUNT 365 a 317 c 459 g 303 t 2932 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GC-- UGGC-GGC-A -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--GA-C--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AUC -GC-GUAGG- G-A--UCU-A U-CCAC---G -GGUG-G-GG 421 -GAU-AA-CA U--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---ACC-(-- --------UG 541 AG-------- -)-GGU---- ---------- ----CAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CU----- 661 ----GUGG-- AGG---A-|G CCUGC----- -UG|----UC G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CG 1021 --GG-GAC-- G--------- ---------( ------AUGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-UA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGGG-C-- 1201 UAG-CGUUGC UC-GGAAUGA -CU-GGGC|G UAAA-GGG-- CCG-UAG-GC -G|-GU-UU- 1261 A-CA-CAG|U CAG---AUGU G-AAA-UU-C CA-GGG-C(- UU-A)ACCUU -GG-G-GAC- 1321 -UGCA-UUUG A-UAC-GUGU A-GACUA-GA GUG-----UG A-GA-GAGGG UUG-U|GGAA 1381 UU-CCCAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CAACCUG-- ---------- ---------- ---------G 1501 CUC--AU-UA CUUGAG-CUG AG-G------ -------GC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUUA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.9 OCEANOSPIRILLUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.9 OCEANOSPIRILLUM_GROUP. ORGANISM 2.14.3.9 OCEANOSPIRILLUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.9.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.9.1 HALOMONAS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.9.1 HALOMONAS_SUBGROUP. ORGANISM 2.14.3.9.1 HALOMONAS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.elonga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas elongata. ACCESSION No information KEYWORDS No information. SOURCE Halomonas elongata. ORGANISM Halomonas elongata. REFERENCE 1 AUTHORS Gauthier,M.J., Lafay,B., Christen,R., Fernandez,L., Acquaviva,M., Bonin,P. and Bertrand,J.C. TITLE Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium JOURNAL Int. J. Syst. Bacteriol. 42, 568-576 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67023 ATCC 33173 = NCIMB 2198 (T) = DSM 2851 BASE COUNT 357 a 346 c 476 g 286 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GA-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ----CC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CUUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-UG-CU --UGU-CGG( U----UAAUA -----C---) CCGG-CA-AG 1081 ---------- -------G-G A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUU A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G NUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCGG-- -AA----CUU 1981 -CCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- AA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CUCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -NGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCAC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AGUCA--C A-CGGA-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.elong2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas elongata. ACCESSION No information KEYWORDS No information. SOURCE Halomonas elongata. ORGANISM Halomonas elongata. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93355 ATCC 33173 = NCIMB 2198 (T) = DSM 2851 BASE COUNT 358 a 350 c 463 g 284 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-NAGC 121 N--NA-AA-C NA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ANNA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCN|-UC--N AGCN-GCNG- 361 -A-CN-GG-U NAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------NA-- G(-NAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CUUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-UG-CU --UGU-CGG( U----UAAUA -----C---) CCGG-CA-AG 1081 ---------- -------G-G A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCNGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUU A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-N AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UA- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-NCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UN--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAN-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- AA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CUCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.eurih2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas eurihalina str. F9-6 ATCC 49336 (T). ACCESSION No information KEYWORDS No information. SOURCE Halomonas eurihalina str. F9-6 ATCC 49336 (T). ORGANISM Halomonas eurihalina. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V.eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49336 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87218|g992996 Former RDP Sids: Vl.eurihal ATCC 49336 (T) = ACAM 353 isolate_name= F9-6 NB: former name Volcaniella eurihalina BASE COUNT 356 a 351 c 477 g 283 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GNC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GA-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CUUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GRA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACWAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-UG-CU --UGU-CGG( U----UAAUA -----C---) CCGG-CA-AG 1081 ---------- -------G-G A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 G-GU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CNA 1981 -GCC-A--(- GAGA-)-UAN -C-UNGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- AA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CUCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.euriha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas eurihalina str. F9-6 ATCC 49336 (T). ACCESSION No information KEYWORDS No information. SOURCE Halomonas eurihalina str. F9-6 ATCC 49336 (T). ORGANISM Halomonas eurihalina. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49336 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42620|g1161297 Former RDP Sids: Vl.euriha2 ATCC 49336 (T) = ACAM 353 isolate_name= F9-6 NB: former name Volcaniella eurihalina BASE COUNT 357 a 348 c 482 g 286 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--NU----- ---------- ---------- 241 --------UG -)NU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GA-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UNCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CUUAU----- -GU|----CG A--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU NAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-UG-CU --UGU-CGG( U----UAAUA -----C---) CCGG-CA-AG 1081 ---------- -------G-G A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUN( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GN-UU- 1261 G-GU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGN -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-NGUC-AU CAU-G-GC-C CUUAC-G-GN -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-NG -UN--CAAUN GGU-U-G-C- GA-AGC-G(G 2881 -NGA)CGUG- ---------- GA-GCUAA-U CUCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-NC UNGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GN-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --AAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.halmph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas halmophila. ACCESSION No information KEYWORDS No information. SOURCE Halomonas halmophila. ORGANISM Halomonas halmophila. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59153 Former RDP Sids: F.halmophi ATCC 19717 = NCIMB 1971 NB: former name "Flavobacterium" halmophilum BASE COUNT 371 a 352 c 481 g 295 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NGAAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GA-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CUUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCN -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-GG-CU --UGU-CGG( U----UAAUA -----C---) CCGG-CA-GG 1081 ---------- -------A-A G-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 G-GU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAUG GGU-C-G-C- AA-AGC-G(G 2881 -CGA)CGUG- ---------- GC-GCUAA-U CCCAU-AAAG -UC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG. .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.hphila 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas halophila str. F5-7 DSM 4770 (T). ACCESSION No information KEYWORDS No information. SOURCE Halomonas halophila str. F5-7 DSM 4770 (T). ORGANISM Halomonas halophila. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 4770 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93353 Former RDP Sids: Del.hphila DSM 4770 (T) = CCM 3662 isolate_name= F5-7 NB: former name Deleya halophila BASE COUNT 351 a 335 c 441 g 275 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-NGC-N -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GA-- G(-GAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-CG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCNN -NAA-C-UCN -(UACG)--G GAG-GN-AN- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CU --UGU-GGG( U----UAAUA -----C---) CCUG-CA-AG 1081 ---------- -------A-A G-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCN-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UN-NNGNNN- AAUA-CCAG- 1441 -U-N-GC(-N AA-N)GCNG- -CCUUCUN-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACN-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CNAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------G ---NGNG--- -AA----CCN 1981 -UCC-A--(- GAGA-)-UGG -A-UGGG--- UN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- NG-------- ----AA---| CNC-UC-AGA |---C|N--G 2161 GU-NC-UGCA UG|G-CCG-- UCG-UCN|-G C-U---CG-U |GU-U(-GUN A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CNAN-N--NC AACCC-UU-N |-UC--CCU- 2281 AU--UUGC-C AG-CNA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCN|N 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- CA-UCC-C(G 2881 -CNA)GGGG- ---------- GA-GCUAA-U CUCAU-AANG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UNAAGU-CG -NAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CNGUN- AAUAC-GUU- CCC-GNG-CC .......... 3061 .......... .......... .......GGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.salina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas salina. ACCESSION No information KEYWORDS No information. SOURCE Halomonas salina. ORGANISM Halomonas salina. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42617|g1146328 Former RDP Sids: Del.salina NB: former name Deleya salina BASE COUNT 337 a 335 c 422 g 273 t 3009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCNG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGN- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------NA-- G(-NAAA-)C -UCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 AG-------- -)-GGN---- ---------- ----NNNA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UN-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-CG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGN-G-A 841 (CUGA-GA-C AC.)...... .......... .(....)... .......... .......... 901 ........UU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CU --UGU-GGG( U----UAAUA -----C---) CCUG-CA-AG 1081 ---------- -------A-A G-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GANNA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GNGANN- AAUA-CCAG- 1441 -U-G-GC(-N AA-N)GCNG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CNAANA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------G ---NGNN--- -AA----CCA 1981 -UCC-A--(- GAGA-)-UGG -A-UGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG N)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|N 2701 G-AA-CU-C- U-AGN-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GANN-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAC-N-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- CA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UNAAGU-CN -NAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -ANA-AU)-G GCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -NAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GNUG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.pacfca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas pacifica. ACCESSION No information KEYWORDS No information. SOURCE Halomonas pacifica. ORGANISM Halomonas pacifica. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42616|g1146327 Former RDP Sids: Del.pacfca DSM 4742 (T) = ACAM 345 NB: former name Deleya pacifica BASE COUNT 360 a 348 c 483 g 285 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-GG-CC --UGA-GGG( C----UAAUA -----C---) CCUU-CA-GG 1081 ---------- -------A-A G-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGANA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GG-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUANUU-CG -(AUGCAA-C G)--CGAGGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- AA-UAC-C(G 2881 -CGG)NGUG- ---------- GA-GCUAA-U CCCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.halde2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas halodenitrificans. ACCESSION No information KEYWORDS No information. SOURCE Halomonas halodenitrificans. ORGANISM Halomonas halodenitrificans. REFERENCE 1 AUTHORS Miller,J.M., Dobson,S.J., Franzmann,P.D. and McMeekin,T.A. TITLE Re-evaluating the classification of Paracoccus halodenitrificans with sequence comparisons of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 360-361 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04942|g493183 Former RDP Sids: Par.halden ATCC 13511 = NCIMB 700 (T) = CCM 286 = DSM 735 NB: former name Paracoccus halodenitrificans BASE COUNT 377 a 364 c 487 g 298 t 2850 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAGNCUU -NAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GC|----CG G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-CG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AU-CC --UCG-GGG( C----CAAUA -----C---) CUCC-GA-GG 1081 ---------- -------G-A G-GA-NAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACNGGCU-A ACUCN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GU- 1261 G-AU-CAG|C CAG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -AGCA-UCCG G-AAC-UGUC A-CGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -GUG-A--(- GAGA-)-UCA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CAUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- UA-GCUAA-U CCCGA-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.salin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas salina. ACCESSION No information KEYWORDS No information. SOURCE Halomonas salina. ORGANISM Halomonas salina. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V. eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87217|g992989 Former RDP Sids: Del.salin2 NB: former name Deleya salina BASE COUNT 359 a 349 c 488 g 279 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GCC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AN-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|--C--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGG---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-GG-CC --UUG-GGG( C----UAAUA -----C---) CCCC-GA-GG 1081 ---------- -------A-A G-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GAC -CUUUG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---UGCG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCGG-AAAG -YC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-N G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.cupida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas cupida. ACCESSION No information KEYWORDS No information. SOURCE Halomonas cupida. ORGANISM Halomonas cupida. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42615|g1146326 Former RDP Sids: Del.cupida DSM 4740 (T) = ACAM 343 NB: former name Deleya cupida BASE COUNT 357 a 335 c 472 g 288 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGNA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGA-AG (--CU----- ---------- ---------- 241 --------UG -)NU-UCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--U- G--NUA---- 661 ----UCGG-- AUG---A-|G CCCAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-CG-CC --UCU-GGC( C----CAAUA -----C---) GUCA-GA-GG 1081 ---------- -------G-A A-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGNCU-A NCUCC-GUG( CCA--GNAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-NNUUAN UC-GGAAUUA -CU-GGGN|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGU-C(- UC-A)N-CCU -GG-G-AAU- 1321 -GGNA-UCCG G-ANC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GU(-G AA-G)GCGG- -NCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -NC-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAG -CUUUG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUNC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------G ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UC-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC ANCCC-UU-G |-UC--CCU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-AUC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCGA-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGN- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CAA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGNG-U 3301 G---AAGUC- GUAG-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.sglac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas subglaciescola. ACCESSION No information KEYWORDS No information. SOURCE Halomonas subglaciescola. ORGANISM Halomonas subglaciescola. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42614|g1146418 BASE COUNT 364 a 345 c 452 g 276 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -GGC-UU--A ACAN-NNNNA A-GUC-GAGC 121 N--NA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCGG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GNA---- ---------- ----GAAA-- ---GCGGGG- NN--U..... 601 ..(....... .......... ...)...... .........| .....G--C- G--CNA---- 661 ----UCGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-CG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCN -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-UG-CC --GUC-GGG( U----UAAUA -----C---) CCCG-GC-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-CAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GN-G-AAC- 1321 -AGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GNGAGG- AAUA-CCAG- 1441 -U-G-GC(-N AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-N-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CN--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C N)--CNAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UN|--- ---------C ---UGCN--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- NG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- NG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUN A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-N-GG -UA--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGC-C-GG -CA--CAAAG GGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- CA-GCGAA-U CCCAU-ANNG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.haldur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas halodurans. ACCESSION No information KEYWORDS No information. SOURCE Halomonas halodurans. ORGANISM Halomonas halodurans. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42619 BASE COUNT 365 a 351 c 452 g 279 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-NGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 N--GA-AA-C NA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCN|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCGG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-A--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- NN--UC---- 601 --(------- ---NNCC--- ---)------ -----NN--| -NCNCN--N- U--CNN---- 661 ----AUG--- ------A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-CG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-UG-CC --GUC-GGG( U----UAAUA -----C---) CCCG-GC-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-CAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -AGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 NGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C N)--CNAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UGCN--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A CN-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-N-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAG GGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- CA-GCGAA-U CCCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --NANG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.sglacs 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas subglaciescola. ACCESSION No information KEYWORDS No information. SOURCE Halomonas subglaciescola. ORGANISM Halomonas subglaciescola. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93358 ACAM 12 (T) = DSM 4683 BASE COUNT 364 a 353 c 465 g 276 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 N--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CG U--------- ------GG-- G(-GAAA-)C -CCAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GAAGGG- GC---C---- 601 --(------- ---UUCN--- ---)------ -----NN--| -CCUUU--C- N--CNA---- 661 ----UNGG-- AUN---N-|N CCUAU----- -GU|----CG N--NUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAA-- GA-A-CG-CC --GUC-GGG( U----UAAUA -----C---) CCCG-GC-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCNGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-AU-CAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -AGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CCUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UNC -C-NUGG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UN|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCNGN NA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AN CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAAG GGC-U-G-C- NA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAU-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GGA- CU-GC-ACCA -GAA-G-UGN 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.venust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas venusta. ACCESSION No information KEYWORDS No information. SOURCE Halomonas venusta. ORGANISM Halomonas venusta. REFERENCE 1 AUTHORS Dobson,S.J. and Franzmann,P.D. TITLE Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae JOURNAL Int. J. Syst. Bacteriol. 46, 550-558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42618|g1146329 Former RDP Sids: Del.venust DSM 4743 (T) = ACAM 346 NB: former name Deleya venusta BASE COUNT 354 a 345 c 418 g 280 t 2979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-N -GGC-CU--A ACAC-AUGCA A-GUN-NAGC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CN----- ---------- ---------- 241 --------UG -)CU-NNCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCN-GCGG- 361 -A-CG-GN-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- N(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-G...... .......... ..-....... ........C- ---------- 601 --(------- ---UUCN--- ---)------ ---------| -NCUCC--C- N--CUA---- 661 ----UUNN-- AUN---N-|G CCUAU----- -NU|----CG N--AUUA-G- CUA-G---UU 721 GN-UN-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCN-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CC --UAG-UGG( U----UAAUA -----C---) CCAU-UA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-AGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCN(-G UNNAA)-UGC -GU-AGAG-A UC-NNNANG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CN--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- N-NNNAGUAC 1801 NGC-C---(G CAA)---G-G UU-NNAACUC -NAA-NNAAU UG-ACNNN-N -N-C-CC--G 1861 C-A--CN-AG CGNUNG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -GUG-A--(- GAGA-)-UCA -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AANCC-UU-G |-UC--CUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGN- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GN -UA--CAAAG GGU-U-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- CA-GCUAA-U CCCGN-AANG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UNAAGU-CN -NAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -ANA-AU)-G UCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UNNG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NNNAA-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-GUAG G(NGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.varbil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas variabilis. ACCESSION No information KEYWORDS No information. SOURCE Halomonas variabilis. ORGANISM Halomonas variabilis. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93357 Former RDP Sids: Hlv.varbil NB: former name Halovibrio variabilis BASE COUNT 365 a 336 c 462 g 275 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGN 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- CUG|-AC--N AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACN---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUCC--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AG- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CC --UGU-CGG( U----UAAUA -----C---) CCGG-CA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-GGCUA-GA GUA-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-N)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----GCC 1981 -GGA-A--(- GAGA-)-UUC -U-GGUG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UNG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCNGN NN-------- CGAG-C--GC AACCC-UU-G |-UC--NUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ANG--UC -A-NGU.... .......C.. ........AA -UA--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- CA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUCCGNA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-NA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.meridi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas meridiana. ACCESSION No information KEYWORDS No information. SOURCE Halomonas meridiana. ORGANISM Halomonas meridiana. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93356 ACAM 246 (T) = DSM 5425 BASE COUNT 364 a 345 c 467 g 272 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GANN-- ---GGGGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUCC--C- G--CUA---- 661 ----UGGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CC --UNN-NGG( U----UAAUA -----C---) CCGC-UA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-AGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCNG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 NGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UN|--- ---------C ---UGCG--- -AA----UUU 1981 -GGN-A--(- GAGA-)-UAC -C-UUAG--- NG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|N--G 2161 GU-NC-UGCA UG|G-NUG-- UNG-UNA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-NCCGU AA-------- CGAG-N--NC AACCC-UU-G |-NN--CUU- 2281 NU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CN-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CN-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCGA-AAAG -CC-G-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.aqmari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas aquamarina. ACCESSION No information KEYWORDS No information. SOURCE Halomonas aquamarina. ORGANISM Halomonas aquamarina. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93352 Former RDP Sids: Del.aqmari DSM 30161 (T) = IAM 12550 = NCIMB 557 = ATCC 14400 NB: former name Deleya aquamarina BASE COUNT 361 a 341 c 452 g 269 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNCC-AG (--NU----- ---------- ---------- 241 --------UG -)CU-GNNU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- NNG|-AC--N AGNG-GNGG- 361 -A-CN-GG-U GAGU---AAU -NC-AUAGG- A-A--UNU-N C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACN---- ---------- ---------- ---------- ---NCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GANA-- ---GGGGGN- ---------- 601 --(------- ---UCCN--- ---)------ ---------| -NCUCC--C- G--CUA---- 661 ----UNGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UNU--(G -AGA)-GGNU ----GA-U-- CAG-C|C-NN -AUCGG-G-A 841 (CUGA-NA-C NCG)--GCCC -NNN-C-NCC -(NNCG)--G NAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CC --UAG-CGG( U----UAAUA -----C---) CCGC-UA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|C CGG---UUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-UGUC A-AGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CC-- -------A|G -CC-GU-UGG -GU-GC---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------GCA -CUUUG-UGG 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-N(-GUG A)-ANUGU-U 2221 NG-G-(UUAA -GN)-NCCGU AA-------- CGAG-N--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|N 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCGA-AAAG -CC-G-AUC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ch.marismo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromohalobacter marismortui. ACCESSION No information KEYWORDS No information. SOURCE Chromohalobacter marismortui. ORGANISM Chromohalobacter marismortui. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V.eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87219|g992985 BASE COUNT 343 a 353 c 467 g 259 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GNC-A -GCC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GA-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-AG-CG --UGC-CGG( C----CAAUA -----C---) CCGG-UA-CG 1081 ---------- -------G-A C-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GU- 1261 G-UC-ACG|C CGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-GGGC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 CCU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCC 1981 -GGA-A--(- GAGA-)-UUC -C-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- GA-AAG-C(G 2881 -CGA)GCUG- ---------- AA-GCUAA-U CCCGA-AAAG -CC-G-ACC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ch.marism3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromohalobacter marismortui str. A-100. ACCESSION No information KEYWORDS No information. SOURCE Chromohalobacter marismortui str. A-100. ORGANISM Chromohalobacter marismortui. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V.eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87221|g992983 isolate_name= A-100 BASE COUNT 353 a 352 c 482 g 275 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GCC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-GG-UU --UGU-CGG( U----CAAUA -----C---) CCGG-CA-AA 1081 ---------- ---------A GCGA-CAUC- A-UCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|C CGG---UUGU G-AAA-GC-C CC-GGG-G(- UC-A)A-CCU -CG-G-AAC- 1321 -GGCA-UCCG G-AAC-GGGC A-GGCUA-GA GUG-----UA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CU- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G AAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-GGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCC 1981 -GGA-A--(- GAGA-)-UUC -C-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAG -YC-G-GYC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGGG-G-C G-AU-CA-CC A-CNGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ch.marism4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromohalobacter marismortui str. A-492. ACCESSION No information KEYWORDS No information. SOURCE Chromohalobacter marismortui str. A-492. ORGANISM Chromohalobacter marismortui. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V.eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87222|g992984 isolate_name= A-492 BASE COUNT 356 a 360 c 489 g 269 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-GG-CU --UGU-CGG( C----CAAUA -----C---) CCGG-CA-AG 1081 ---------- ---------A GCGA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|C CGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-GGGC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCC 1981 -GGA-A--(- GAGA-)-UUC -C-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAG -CC-G-GCC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ch.marism2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chromohalobacter marismortui str. A-65. ACCESSION No information KEYWORDS No information. SOURCE Chromohalobacter marismortui str. A-65. ORGANISM Chromohalobacter marismortui. REFERENCE 1 AUTHORS Mellado,E., Moore,E.R.B., Nieto,J.J. and Ventosa,A. TITLE Phylogenetic inferences and taxonomic consequences of 16S ribosomal DNA sequence comparison of Chromohalobacter marismortui, Volcaniella eurihalina, and Deleya salina and reclassification of V.eurihalina as Halomonas eurihalina comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 712-716 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87220|g992986 isolate_name= A-65 BASE COUNT 357 a 359 c 488 g 268 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-A C-CCAG---U -CGUG-G-GG 421 -GAU-AA-CC U--------- ------GG-- G(-GAAA-)C -CCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CGA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-GG-CU --UGU-CGG( C----CAAUA -----C---) CCGG-CA-AG 1081 ---------- ---------A GCGA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|C CGG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCG G-AAC-GGGC A-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GY-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCC 1981 -GGA-A--(- GAGA-)-UUC -C-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAG -CC-G-GCC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGA-AU)-G GCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-N G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGA .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.marina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas marina str. 219 DSM 4741 (T). ACCESSION No information KEYWORDS No information. SOURCE Halomonas marina str. 219 DSM 4741 (T). ORGANISM Halomonas marina. REFERENCE 1 AUTHORS Dobson,S.J., McMeekin,T.A. and Franzmann,P.D. TITLE Phylogenetic relationships between some members of the genera Deleya, Halomonas, and Halovibrio JOURNAL Int. J. Syst. Bacteriol. 43, 665-673 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 4741 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M93354 Former RDP Sids: Del.marina DSM 4741 (T) = NCIMB 1877 = LM 2217 = ATCC 25374 isolate_name= 219 NB: former name Deleya marina BASE COUNT 362 a 326 c 447 g 267 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGN-GGN-A -GGN-UU--A ACAC-ANGCA A-GNN-NAGN 121 N--GA-AA-C NA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNU-AG (--NN----- ---------- ---------- 241 --------NG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GNN|-NN--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UNU-G C-CCGA---U -AGUG-G-GG 421 -GAC-AA-CC U--------- ------GG-- G(-GAAA-)C -UCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCCAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CU --UCG-GGA( U----UAAUA -----C---) UCCC-GA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UA- 1261 A-GU-CAG|C CAG---GUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCUG G-AAC-UGCU U-GGCUA-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CNAAGA 1921 A-CCUUA-CC UAC-NC-UUG ACA-UC|--- ---------C ---AGAG--- -GA----CUU 1981 -UCC-A--(- GAGA-)-UNG -A-UUGG--- UN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|N--G 2161 GU-GC-UGCA NG|G-CNG-- UCG-UCA|-G C-U---NG-N |GU-N(-GNG A)-AAUGU-N 2221 GG-G-(UNAA -GU)-NCCGU AA-------- NNAG-N--GC AACCC-CU-A |-UN--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNN|G 2701 G-AA-CU-C- U-AAG-GA-G A-CN-G-CCN --G.(..... ..)....... .......... 2761 .......... .......... .........U CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG GGU-U-G-C- AA-UAC-G(G 2881 -CGA)CGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CU-U-GCC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-CA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlm.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halomonas marina. ACCESSION No information KEYWORDS No information. SOURCE Halomonas marina. ORGANISM Halomonas marina. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11275 Former RDP Sids: Del.marin2 IAM 12928 = ICPB 3528 = LMG 2218 = DSM 50416 = ATCC 27129 NB: former name Deleya marina BASE COUNT 150 a 125 c 168 g 105 t 3828 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .GG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-CG-CU --UCG-GGA( U----UAAUA -----C---) UCCC-GA-GG 1081 ---------- -------A-A A-GA-CAUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AAUA-CAUG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUK-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GWAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G --C-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CM---- ---K-(-AA- ---C)G-CA- AUAA-GUUGA C|C|N-CCN- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ...G-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG GGU-U-G-C- AA-UAC-G(G 2881 -CGA)CGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CU-U-GCC- GCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zyb.palmae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zymobacter palmae str. T109 IAM 14233 (T). ACCESSION No information KEYWORDS No information. SOURCE Zymobacter palmae str. T109 IAM 14233 (T). ORGANISM Zymobacter palmae. REFERENCE 1 AUTHORS Okamoto,T., Taguchi,H., Nakamura,K., Ikenaga,H., Kuraishi,H. and Yamasato,K. TITLE Zymobacter palmae gen. nov., sp. nov., a new ethanol-fermenting perotrichous bacterium isolated from palm sap JOURNAL Arch. Microbiol. 160, 333-337 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14555|g457165 isolate_name= T109 BASE COUNT 379 a 347 c 477 g 300 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AUU -GAACC-C-- UGUC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-AUGGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------GU-- G(-GAAA-)C -GCAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCCAU----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UUCC-GC-GU 961 G-U-GU-G-U A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --GG-GAA-- GA-A-AG-CC --UGA-GAC( C----UAAUA -----C---) GUUU-CA-GG 1081 ---------- -------A-A G-GA-CAUC- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -AGCA-UUUG G-AAC-UGGC A-GACUU-GA GUG-----CA G-GA-GAGGA AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-UC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -CGA)CGUG- ---------- AA-GCUAA-U CCCAG-AAAG -CU-C-GCC- UCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- UU-GC-ACCA -GAA-G-UGG 3121 C-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAA-A-C G-GU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GAAA-CAAGG UAGUC-GUAG G(GGG-A)CC UGUGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Tralva 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Clark,M.A., Baumann,L., Munson,M.A., Baumann,P., Campbell,B .C., Duffus,J.E., Osborne,L.S. and Moran,N.A. TITLE The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs JOURNAL Curr. Microbiol. 25, 119-123 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11928 symbiont_of= Trialeurodes vaporariorum (greenhouse whitefly) BASE COUNT 434 a 292 c 423 g 308 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GAC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GCAUCAU AAG------- ---------- 241 UGAGUUGGCA -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAA -AC-AUGGA- A-A--UUU-A C-CUAA---U -AGUG-G-GG 421 -AAU-AA-CG U--------- ------AG-- G(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---UCU-(-- --------UA 541 CG-------- -)-AGA---- ---------- ----UAAA-- ---GCAGGG- GC-UUGA--- 601 --(------G GAAAAAAGAA A--)------ ----UCAA-| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|U UCCAU----- -GC|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGU-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GUCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-AAAA-UU --AUA-AAA( G---AAUAAA A----U---) UAUA-AU-GA 1081 ---------- -------A-- U-GA-CGGU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- AUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|C CUU---AUGU A-AAA-UC-C CU-AGG-C(- UU-A)A-CCA -AG-G-AAC- 1321 -GUGA-UAAG G-AAC-UGAC A-AGCUA-GA GUG-----CA G-UA-GAGGA AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUAU C--AA-CU-- -------A|G -CC-GU-UGG -GU-UC---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -UUUAG-UGG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA U|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -UA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CUG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUAAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AA -UA--CAAAG GGU-C-G-C- AA-AAC-G(G 2881 -UAA)CGUG- ---------- AA-GCUAA-U CCCAA-AAAA -AU-U-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UAAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GAA- UU-GC-ACCA -GAA-G-UGG 3121 C-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -GGAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-A-C A-GU-UA-CU A-CGGU-GUG UUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Bemit1 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Clark,M.A., Baumann,L., Munson,M.A., Baumann,P., Campbell,B .C., Duffus,J.E., Osborne,L.S. and Moran,N.A. TITLE The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs JOURNAL Curr. Microbiol. 25, 119-123 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11925 symbiont_of= Bemisia tabaci (sweetpotato whitefly) BASE COUNT 451 a 288 c 405 g 309 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UAGC-GGC-A -GAC-AU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GCAUCAU AC-------- ---------- 241 -AGGUUGGCA -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AC-AUGUA- A-A--UAU-A C-CUAA---A -AGUG-G-GG 421 -AAU-AA-CG U--------- ------AC-- G(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UAU-(-- --------UA 541 CG-------- -)-AGA---- ---------- ----UAAA-- ---GCAGGG- GC-UUGAU-- 601 --(------- --AAAAAAA- ---)------ ---AUCAA-| -CCUUG--C- G--CUU---- 661 ----UUAG-- AAA---A-|U UACAU----- -GC|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGU-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-A AAG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GUCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AA-GAA-- GA-AAAG-UU --AGA-AAA( -----UAAAA -----A---) GUUA-UA-AC 1081 ---------- -------U-A U-GA-CGGU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GGGC- AUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|C UUU---AUGU G-AAA-GC-C CU-AUG-C(- UU-A)A-CAU -AG-G-AAC- 1321 -GGAA-UAAA G-AAC-UGAC A-AACUA-GA GUG-----CA G-AA-GAGGA AGG-U|AGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-U-GC(-G AA-G)GCGA- -CCUUCUG-- ---------- ---------- ---------G 1501 GCU--GA-CA CUGACA-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUAU C--AA-CU-- -------A|G -CC-GU-UGG -AU-UC---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -UUUUG-UGG 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA U|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGCAAA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -UA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AA-CGC---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CUG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAA-G-AG -UA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-A-AA -AA--CAAAG GGU-C-G-C- AA-AAU-G(G 2881 -UAA)CAUG- ---------- AA-GCUAA-U CCCAA-AAAA -AU-U-GUC- UUAGUUCGGA 2941 U-UGGAGUC- (UGAAAC-U- C)-GACUCCA -UAAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GAA- AU-GC-ACCA -GAA-G-UGG 3121 C-AAG-U-UU -AA-CC---- ---------- -------AAA AAACA(GGAG AACAGUCACU 3181 ACGG------ ---------- ---------- -------)UG UGGUUCAUG- ---....... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Siphph 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Clark,M.A., Baumann,L., Munson,M.A., Baumann,P., Campbell,B .C., Duffus,J.E., Osborne,L.S. and Moran,N.A. TITLE The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs JOURNAL Curr. Microbiol. 25, 119-123 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11927 symbiont_of= Siphoninus phillyreae (ash whitefly) BASE COUNT 433 a 281 c 412 g 325 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GAC-AU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--GCAUCUU U--------- ---------- 241 -AUACUGGCA -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAA -AC-AUGGA- A-A--UUU-A C-CUAA---U -AGUG-G-GG 421 -AAU-AA-CG U--------- ------AU-- G(-GAAA-)C -GUAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UCU-(-- --------UA 541 CG-------- -)-AGA---- ---------- ----UAAA-- ---GCAGGG- GA-UUGAU-- 601 --(------- ---GAAA--- ---)------ ---AUCAA-| -CCUGG--C- G--CUA---- 661 ----AUAG-- AUG---A-|U UCCAU----- -GA|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGU-AA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UUC -(UAAG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GUCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-AAAA-UU --AUA-AAA( ----GAAAAA A--------) UUAU-AA-GU 1081 ---------- -------A-- U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- AUG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|C CUU---AUGU G-AAA-GC-C CU-AUG-C(- UU-A)A-CAU -AG-G-AAA- 1321 -UGGA-UAAG G-AAC-UGAC A-AGCUA-GA GUG-----CA G-UA-GAGGA AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUAU C--AA-CU-- -------A|G -CC-GU-UGG -GU-UC---- ---------- 1681 -(UUA-AA)- ---------- ---------- ---------- -------GAA -UUUUG-UGG 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GUUGA U|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -UA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUAC-C AG-UGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CUG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUAAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AA -UA--CAAAG GGU-C-G-C- AA-AAC-G(G 2881 -UAA)CGUG- ---------- AA-GCUAA-U CCCAA-AAAA -AA-U-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UUAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GAA- UU-GU-ACCA -GAA-G-UGG 3121 C-UAG-U-UU -AA-CCAU-- ---------- ---------- -----(---- UAUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A UGGAGA-A-C A-GU-UA-CU A-CGGU-GUG UUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.9.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.9.2 OCEANOSPIRILLUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.9.2 OCEANOSPIRILLUM_ASSEMBLAGE. ORGANISM 2.14.3.9.2 OCEANOSPIRILLUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.minutu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum minutulum. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum minutulum. ORGANISM Oceanospirillum minutulum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 381 a 344 c 465 g 310 t 2876 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UAAACCGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUGGG- U-A--UCU-G C-CCGA---U -AGUG-N-GG 421 -GAC-AG-CA C--------- ------GG-- G(-GAAA-)C -UCGU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGNC- ---------- 601 --(------- ---UUNNN-- ---)------ ---------| -G-UUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCCAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 N-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UG 1021 --AG-GAG-- GA-AAAG-UU --AGU-GGU( -----UAAUA -----C---) CCAC-UA-GC 1081 ---------- -------C-G U-GA-CGUU- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|C CGG---UUGU G-AAA-GC-C CU-AGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-CCCG G-AAC-UGGC A-AGCUA-GA GUA-----CA G-UA-GAGGA AGG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -UU-GU-UGG -AA-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGU -UUUAG-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ANA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGCA GGU-U-G-C- UA-ACC-C(G 2881 -CGA)GGGG- ---------- GC-GCUAA-U CCGUC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GU-UA-CC A-CGGU-GUG GUU-AA-UG- ACU-GGG... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.japoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum japonicum. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum japonicum. ORGANISM Oceanospirillum japonicum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 381 a 333 c 473 g 311 t 2878 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UAAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- A-A--UCU-G C-CCAG---U -AGAG-G-GG 421 -GAU-AG-CC A--------- ------GG-- G(-GAAA-)C -UCUG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---AGGGG-- ----CU---- 601 --(------- ---UUU---- ---)------ -----AG--| --CUCC--U- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --AG-GAG-- GA-AGGC-CG --UAU-GCU( -----UAAUA -----G---) GYAU-GC-GG 1081 ---------- -------A-U U-GA-CGUU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-UA- 1261 G-GU-CAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-ACG- 1321 -UGCA-CCUG A-UAC-UGCU U-AUCUA-GA GUA-----AG G-UA-GAGGG UAG-U|AGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--AU-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGC -CG-AC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GUU -GGGAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-NNGG--- NG-------- ---CC----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CYG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGN-N CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AG -UA--CAGAG GGU-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-U-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- CU-UC-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GYAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-AU-UA-CC A-CGGU-GGG GUU-CA-UG- ACU-GGG... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR135 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35473 BASE COUNT 64 a 50 c 65 g 46 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GAC- ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GG-GAG-- AA-AAAG-CA --AUA-AGU( -----UAAUA -----C---) CUUA-UU-GC 1081 ---------- -------C-G U-GA-UGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.multig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum multiglobuliferum. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum multiglobuliferum. ORGANISM Oceanospirillum multiglobuliferum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 370 a 329 c 456 g 305 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGAGANA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCGA---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UN---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCNN-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-AAGG-UU --GUA-AGC( -----UAAUA -----C---) CUUG-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-NC-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUG G-AAC-UGGC U-CGCUA-GA GUA-----CA G-AA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUN-- ---------- ---------- ---------G 1501 UCU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGNGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GGC-A--(- GAGA-)-UGC -C-NUAG--- UG-------- ---CC----- --(NU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UA-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-GNC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-CA-CC A-CGGA-GUG AUU-CA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.beijer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum beijerinckii. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum beijerinckii. ORGANISM Oceanospirillum beijerinckii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 378 a 344 c 470 g 310 t 2874 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UAAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCGG---U -AGCG-G-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|G CCUGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-AAGG-UG --CAA-GAU( -----UAAUA -----C---) UCUU-GU-GC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-NC-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG G-AAC-UGGC A-GGCUA-GA GUA-----CA G-AA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 UCU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GGU-A--(- GAGA-)-UAC -C-CUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 AU--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCAC-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGA-GUG AUU-CA-UG. .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.linum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum linum. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum linum. ORGANISM Oceanospirillum linum. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner ,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22365 BASE COUNT 389 a 342 c 470 g 310 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCGG---U -AGCG-G-GG 421 -GAU-AG-CC C--------- ------AG-- A(-GAAA-)U -UUGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- A--CUA---- 661 ----UCGG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UAU-UGA( U----UAAUA -----C---) UCAA-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG G-AAC-UGGC A-GGCUA-GA GUA-----CA G-AA-GAGGG UGG-U|AGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 UCU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GA-AC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GUU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 AU--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-G-GNC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.maris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum maris subsp. maris ATCC 27649. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum maris subsp. maris ATCC 27649. ORGANISM Oceanospirillum maris. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS NB: catalog from ATCC 27649 (not 27509) BASE COUNT 385 a 352 c 473 g 303 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GGG------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCGG---U -AGCG-G-GG 421 -GAU-AG-CC C--------- ------GG-- A(-GAAA-)U -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CUC--- 601 --(------- ---UUCG--- ---)------ ----GAG--| -CCUUC--C- A--CUA---- 661 ----UCGG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GUU-GAC( -----UAAUA -----C---) UCAA-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-NC-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG G-AAC-UGGC A-AGCUA-GA GUA-----CA G-AA-GAGGG UGG-U|AGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 UCU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUC 1981 -GGC-A--(- GAAA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 AU--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGG... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.9.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.9.3 MARINOMONAS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.9.3 MARINOMONAS_ASSEMBLAGE. ORGANISM 2.14.3.9.3 MARINOMONAS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mba.georgn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinobacterium georgiense str. KW-40. ACCESSION No information KEYWORDS No information. SOURCE Marinobacterium georgiense str. KW-40. ORGANISM Marinobacterium georgiense. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community JOURNAL Int. J. Syst. Bacteriol. 47 (2), 369-376 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58339|g1718231 isolate_name= KW-40 BASE COUNT 358 a 326 c 456 g 291 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..AGC---GG 121 U--AG----C AC---A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- GUG|ACG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UC-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UU 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CU 1021 --GU-GAG-- GA-A-AG-GC --GAG-UGG( U----UAAUA -----C---) CCGC-UU-GC 1081 ---------- -------U-G U-GA-CGUU- A-ACA-G-CA G-AA--GAAG ---------G 1141 -ACCGNCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-CCUG A-UAC-UGCU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GG-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCC -UUUAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGU-C AG-CGA---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- AA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCUAA-U CUCAC-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- UANAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s14 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s14. str. s14. ACCESSION No information KEYWORDS No information. SOURCE str. s14. str. s14. ORGANISM str. s14. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69318|g1181100 isolate_name= s14 BASE COUNT 92 a 63 c 114 g 77 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGN- GCG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AGCUA-GA GUA-----CA G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGCCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GA-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCU -CUUGG-UAA 1741 CG--AA---- ---S-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.kriegi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum kriegii. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum kriegii. ORGANISM Oceanospirillum kriegii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 365 a 330 c 465 g 310 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~NNCUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CCAG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-ACGC-UU --GAU-GGU( -----UAAUA -----C---) CCAU-CA-AG 1081 ---------- -------U-U U-GA-CGUU- A-ACU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -U|-GC-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUC G-AAC-UGGC A-GGCUA-GA GUA-----CA G-UA-GAGGG UGG-C|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGG -GA-GA---- ---------- 1681 -(CCU-GU)- ---------- ---------- ---------- -------UCU -CUUGG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAGAG GGU-U-G-C- GA-AGC-G(G 2881 -CGA)CGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CU-A-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-UU-UA-CC A-CGGA-GUG AUU-CA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.jannas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum jannaschii. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum jannaschii. ORGANISM Oceanospirillum jannaschii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 371 a 332 c 461 g 305 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-NG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- A-A--UCU-A C-CAGA---U -AGUG-G-GG 421 -GAU-AA-CC A--------- ------GU-- G(-GAAA-)C -GCUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CUA---- 661 ----UCNN-- AUG---A-|G UCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GN-GAG-- GA-AAGG-UG --ACC-GGC( -----UAAUA -----C---) CCGG-NU-GC 1081 ---------- -------U-G U-GA-CGUU- A-ACU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-CCUG A-UAC-UGCU G-GACUC-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-UGG -GG-GN---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCC -CUUAG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -GCU-A--(- GAGA-)-UAG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGN-N CG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-N-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCAG-AAAA -CC-G-GUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-A-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-U-C G-GU-UA-CC A-CGGU-GUG AUU-CA-NG- ACU-GGGN.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrm.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinomonas communis. ACCESSION No information KEYWORDS No information. SOURCE Marinomonas communis. ORGANISM Marinomonas communis. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11279 BASE COUNT 139 a 116 c 159 g 117 t 3845 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- YAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UGU-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UUA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-U A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUU-UG-GU 1021 --GU-GAG-- GA-AGGG-CG --UAU-AGU( -----UAAUA -----C---) CUGU-AU-GU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-C-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .....G-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-A----- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------UC -UUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCN- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UY -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GGGU- ---------- AA-GCAAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Osp.commun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oceanospirillum commune. ACCESSION No information KEYWORDS No information. SOURCE Oceanospirillum commune. ORGANISM Oceanospirillum commune. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 381 a 322 c 454 g 312 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------GU-- G(-GAAA-)C -GCAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- NN--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-GA 1021 --GU-GAG-- GA-AGGG-CG --UAU-AGU( -----UAAUA -----C---) CUGU-AU-GU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CGG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -GGCA-CCCG A-UAC-UGGC A-GGCUA-GA GUA-----CG G-UA-GAGGG GUG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-A----- ---------- 1681 -(UNU-AU)U ---------- ---------- ---------- --------UC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UYC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 N-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGN-N CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-ACU-C(G 2881 -CGA)GGGU- ---------- AA-GCAAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UNCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-G-C G-GU-UA-CC A-CGGA-GUG GUC-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrm.vaga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinomonas vaga. ACCESSION No information KEYWORDS No information. SOURCE Marinomonas vaga. ORGANISM Marinomonas vaga. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Former RDP Sids: Osp.vagum ATCC 27119 (T) = NCIMB 1962 NB: former name Oceanospirillum vaga BASE COUNT 382 a 319 c 452 g 313 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..AAACUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------NU-- G(-GAAA-)C -GCAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- NN--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CNNUU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(NNA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-GA 1021 --GU-GAG-- GA-AGGG-UA --UGC-CGU( -----UAAUA -----C---) CGGU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CGG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCA-CCCG A-UAC-UGGC A-GGCUA-GA GUA-----CG G-UA-GAGGG GUG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-A----- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------UC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-ANA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --NU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-ACN-U(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-G-C G-GU-UA-CC A-CGGA-GUG GUC-AA-UG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrm.vaga2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinomonas vaga. ACCESSION No information KEYWORDS No information. SOURCE Marinomonas vaga. ORGANISM Marinomonas vaga. REFERENCE 1 AUTHORS Gauthier,M.J., Lafay,B., Christen,R. and Fernandez,L. TITLE Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium JOURNAL Int. J. Syst. Bacteriol. 42, 568-576 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67025 Former RDP Sids: Altm.vaga ATCC 27119 (T) = NCIMB 1962 NB: former name Alteromonas vaga BASE COUNT 379 a 318 c 454 g 312 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------GU-- G(-GAAA-)C -GCAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUGC----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-GA 1021 --GU-CAG-- GA-AGGG-UA --UGC-CGU( -----UAAUA -----C---) CGGU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CGG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCA-CCCG A-UAC-UGGC A-GGCUA-GA GUA-----CG G-UA-GAGGG GUG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-A----- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------UC -NUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GNG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCAC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-C-UU -AA--C---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUU-G-C G-GU-UA-CA C-NGGA-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrm.vaga3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinomonas vaga. ACCESSION No information KEYWORDS No information. SOURCE Marinomonas vaga. ORGANISM Marinomonas vaga. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11280 BASE COUNT 167 a 135 c 189 g 125 t 3760 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 ........G| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -HGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GUCUAU-- GG-GG-(GGA A)-CCC-USA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-GA 1021 --GU-GAG-- GA-AGGG-UA --UGC-CGU( -----UAAUA -----C---) CGGU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-C-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACCCUN-- ---------- ---------- ---------A 1501 CCG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-A----- ---------- 1681 -(UUU-AU)U ---------- ---------- ---------- --------UC -UUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UY -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.9.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.9.4 ENV.SAR156_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.9.4 ENV.SAR156_SUBGROUP. ORGANISM 2.14.3.9.4 ENV.SAR156_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11959 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 62 a 40 c 67 g 46 t 4161 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|--U-UU- 1261 A-GC-AAG|U UGA---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUCA A-AAC-UACU A-AGCUA-GA GUG-----CG A-GA-GAGGA GAG-U|AGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUC--GU-CA CUG....... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR156 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35469|g529991 BASE COUNT 227 a 169 c 233 g 181 t 3566 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........U AGAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UUU-G C-CUUU---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UA 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GNNNNC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCC--C- G--CCU---- 661 ----UUAG-- AGA---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-AUC -(UACG)--G AUG-GC-AG- C-A---GU-U 901 AAG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GGUA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-AU-CA 1021 --GA-GAA-- GA-A-GC-AU --UUU-AAG( U----UAAUA -----C---) CUUA-UU-AU 1081 ---------- -------G-U U-GA-CGUU- A-CCU-G-AA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGGG |---UC---- 1201 -AG-CGUUA- UC--G-AUUA -CU-GGGC|G UAAA-GCGCC GCG-UAG-GC --|-GU-UU- 1261 A-GU-AAG|U UGU---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCA A-AAC-UACU A-AGCUA-GA GUA-----CG A-GA-GAGGA GAG-U|AGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUC--GU-CA CUGACG-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- K-CC-GU--A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -CC-GU-UGG -GC-AG---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------CUG -UUCAG-UGG 1741 CA--CA---- --GC-(UAA- ---C)G-AC- UU-A-GUUGU C|G|C..... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11949 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 72 a 33 c 61 g 59 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGAC-C-- 1201 UAG-CGUAGU UC-GGAAUUA -CU-GGGC|U UAAA-GAGU- UCG-UAG-GU -G|-GU-UG- 1261 A-AA-AAG|U UGG---UGGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AAC- 1321 -UGCC-AUCA A-AAC-UUUU C-AGCUA-GA GUA-----UG A-UA-GAGGA AAG-C|AGAA 1381 UU-UCUAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-AGAAAG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUC--AU-UA CUGACA-CUG AG-G...... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR89 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J. TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35464|g529987 BASE COUNT 184 a 128 c 186 g 143 t 3735 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .....UAG-- AUG---A-|G CCGCU----- -GA|------ G--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- GAG-C|C-AC -ACUGG-A-C 841 (GUGA-CA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA C)-CCC-UGA UCCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-GG-UA 1021 --AG-GAC-- GA-A-AA-GA --AUA-UAG( U----UAAUA -----C---) CUAU-AU-UC 1081 ---------- -------C-G U-GA-CUUA- A-CUU-A-CA G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 AAG-UGUUAA UC-GGAAUUA -CG-GGGU|G UAAA-GNGN- GNG-UAG-GC -G|-NU-U-- 1261 G-UC-AAG|U UGG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AC-- 1321 -UGCA-UUCA A-AAC-UUAU A-GACUA-GA GUA-----CG A-UA-GAGGA GAG-U|AGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CUCUCUG-- ---------- ---------- ---------G 1501 AUC--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUCA C--AA-CU-- -------A|G -CC-GU-UGG -AU------- ---------- 1681 -(CUU-AN)- ---------- ---------- ---------- ---------A -UUCAG-UGG 1741 UA--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUCU .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11936 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 62 a 43 c 74 g 48 t 4149 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A----GAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-AU- 1261 G-CU-AAG|U UGG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UUGC A-UACUG-GA GUA-----CG G-AA-GAGGC GAG-U|AGAA 1381 UU-CAUGGU- GUA-GCC(-G UG-AA)-UGC -GU-AGAU-A UC-AUGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CUCGCUG-- ---------- ---------- ---------G 1501 UC---GA-AA CUGACG-CUG AG-G------ -------UG- C-G....... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11935 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 74 a 48 c 86 g 56 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-AU- 1261 G-CU-AAG|U UGG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UUGC A-UACUG-GA GUA-----CG G-AA-GAGGC GAG-U|AGAA 1381 UU-CAUGGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UC-AUGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -CUCGCUG-- ---------- ---------- ---------G 1501 UCC--GA--A CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC--AA-CA- -GG(AUUA-G AUAC)-C-U- ----G-UA-G U......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR86 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J. TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35461|g529986 BASE COUNT 356 a 287 c 385 g 293 t 3055 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---AGCGAGA AUGAU----- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAUGGUAA-- ---|-----G CGCG-GCGG- 361 -A-CG-GG-U AGGU---AAC -CG-GUAGG- A-A--UCU-A C-CUGG---U -AGAA-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(--AAA-)C -UCGG-A--U UAAUACC-GU 481 AU-ACC---- ---------- ---------- ---------- ---UCU-(-- --------U- 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GAGGG-- CC--UC---- 601 --(------- ---UCUUU-- ---)------ -----GA--| ACGUUU--C- G--CUA---- 661 ----CUAG-- AUG---A-|G CCUGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-UU 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CCG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAA-- GA-A-AA-GU --UAU-UGG( U----UAAUA -----C---) CCAA-UA-AC 1081 ---------- -------C-G U-GA-CAUU- A-CCU-U-CA G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAA- |-GGUC-C-- 1201 AAG-CGUUAA CU--GAAUUA -CU-GGGC|G UAA--GNGU- GUG-UAG-GU -G|-GU-UU- 1261 A-UU-AAG|U UGG---AUGU G-AAU--C-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGAU U-CACUA-GA GUA-----CG A-UA-GAGGG AGG-U|AGAA 1381 UU-CACAGU- GUA-GCG(-G UGAAA)--GN -G--AGAU-A UC-AUGAGG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCA-- -CUCUCUG-- ---------- ---------- ---------G 1501 AC---GU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GN- GU-GG--UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CH-G---A 1621 AAC-G-AUGA C--AA-CU-- -------A|G -CC-GU-UGG --C-U----- ---------- 1681 -(UNU-CG)- ---------- ---------- ---------- --------AG -UUCWA-UGG 1741 CA--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAG 1801 GAG-U---(- ACC)---G-C -C-GCAGCUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG C---GG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AAC-CC-UUG ACA-UC|--- ---------C --UAGUG--- -AA----AUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAC-U--AGA |---C|A--G 2161 GU-GU-UGCA UG|G--UG-- UCG-UCA|-G C-U---CG-- |GU-C(-GUG A)-GAUGU-A 2221 UG-G-(UUAA -GU)-CCAGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --UG(-AA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -G-AAUC-AU CAU-G-GC-C -UUAC-G-GG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G--A -UA--CAGAU GGU-U-S-S- GA-AGC-G(C 2881 -GAG)UUGG- ---------- -A-GCCAA-U CCCAC-AAAG -UC-U-UCC- UUAGUCCGGA 2941 U-UGGUGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-AG -GAAU-CGC- -U-GUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11980 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA BASE COUNT 67 a 41 c 72 g 54 t 4142 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ....G-GAA- |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCA A-AAC-UAAC U-CACUA-GA GUA-----CG A-UA-GAGGG AGG-U|AGAA 1381 UU-CACAGU- GUA-GCG(-- UGGAA)-UGC -GU-AGAU-A UU-GUGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 UUC--UG-UA CUGACA-CUG AG-G------ -------UG- C-GAAA--C- GU........ 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.49-13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11991 library_source= Pacific Ocean station 49 500m depth bacterioplankton DNA BASE COUNT 73 a 42 c 74 g 56 t 4131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCA A-AAC-UAAC U-CACUA-GA GUA-----CG A-UA-GAGGG AGG-U|AGAA 1381 UU-CACAGU- GUA-GCG(-- UGGAA)-UGC -GU-AGAU-A UU-GUGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 UUC--UG-UA CUGACA-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-UA- 1561 GC-GAA-CA- -AG(AUUA-G A...)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA1-8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11948 library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 76 a 46 c 81 g 59 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ....G-GAA- |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCA A-AAC-UAAC U-CACUA-GA GUA-----CG A-UA-GAGGG AGG-U|AGAA 1381 UU-CAUAGU- GUA-GCG(-- UGGAA)-UGC -GU-AGAU-A UU-AUGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 AUC--UG-UA CUGACA-CUA AG-G------ -------UG- C-GAAA--C- GU-GGG-UA- 1561 GC-GAA-CAU -GG(AUUA-G AUAC)-CCU- ----G..... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.29-6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11984 library_source= Pacific Ocean station 29 100m depth bacterioplankton DNA BASE COUNT 75 a 47 c 80 g 59 t 4115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ....G-GAA- |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCCA A-AAC-UAAC U-CACUA-GA GUA-----CG A-UA-GAGGG AGG-U|AGAA 1381 UU-CAUAGU- GUA-GCG(-- UGGAA)-UGC -GU-AGAU-A UU-AUGGAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GC-G- -CCUCCUG-- ---------- ---------- ---------G 1501 AUC--UG-UA CUGACA-CUA AG-G------ -------UG- C-GAAA--C- GU-GGG-UA- 1561 GC-CAA-CAU -GG(AUUA-G AUAC)-CCU- ----G..... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.10 PSEUDOMONAS_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.10 PSEUDOMONAS_AND_RELATIVES. ORGANISM 2.14.3.10 PSEUDOMONAS_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.A.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.10.1 ACINETOBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.10.1 ACINETOBACTER_SUBGROUP. ORGANISM 2.14.3.10.1 ACINETOBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.AW5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone AW5.. ACCESSION No information KEYWORDS No information. SOURCE clone AW5. ORGANISM clone AW5. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89357 NB: GB seq reverse complemented BASE COUNT 62 a 52 c 79 g 49 t 4134 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 ..AU-AG-CU C--------- ------GG-- G(-GAAA-)C -UCGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGC- ----AA---- 601 --(------- ---CUUG--- ---)------ -----UU--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---AU 721 G--UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UGU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-UC -UCCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA -)--CC-UGA UC-A|-GCAU .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.spS2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella sp. str. S2.18. ACCESSION No information KEYWORDS No information. SOURCE Moraxella sp. str. S2.18. ORGANISM Moraxella sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48282|g854342 isolate_name= S2.18 BASE COUNT 80 a 64 c 95 g 61 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAAG- ---GGGGGC- ----AGC--- 601 --(------- ----UUA--- ---)------ ----GCU--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-UG 781 U-AA-C-UG| -G-UCA--(G -AGA)-GGAU ----AA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GU-GAA-- GA-A-GA-CU --CCA-UGG( U----UAAUA -----C---) CCAU-GG-AC 1081 ---------- -------G-A U-GA-CAUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psy.immobl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Psychrobacter immobilis.. ACCESSION No information KEYWORDS No information. SOURCE Psychrobacter immobilis. ORGANISM Psychrobacter immobilis. REFERENCE 1 AUTHORS Bowman,J.P., Cavanagh,J. and Austin,J.J. TITLE Novel Psychrobacter species from Antarctica JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U39399|g1066078 BASE COUNT 383 a 331 c 449 g 314 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C A--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- -UG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- C(-GAAA-)C -UCGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGU- ----AC---- 601 --(------- ---CUUG--- ---)------ -----UU--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-CU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCCG-G-A 841 (CUGA-GA-C ACG)--GCCC -CGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GU-GAA-- GA-A-GA-CU --CCG-UGG( U----UAAUA -----C---) CCAC-GG-CC 1081 ---------- -------G-A U-GA-CAUU- A-GCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GC-UC- 1261 G-AU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGUU G-AGCUA-GA GUA-----UG U-GA-GAGGA AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 CAU--AA-UA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GU-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UC-GU-UGG -GU-CCC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGA -CUUAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAUUCUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------U ---CUAG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UCC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUA-GA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAU -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CGGC--- ---------- ---------- ----(---UU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCCC|G 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CU-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG GGC-A-G-C- UA-CAG-G(G 2881 -CGA)UGUG- ---------- AU-GUGAA-U CUCAA-AAAG -CC-U-AUC- GUAGUCCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-GC-ACCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGA-G-C G-UU-CA-CC A-CGGC-GUC GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGU--UG GA........ 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.phpyru 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella phenylpyruvica. ACCESSION No information KEYWORDS No information. SOURCE Moraxella phenylpyruvica. ORGANISM Moraxella phenylpyruvica. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74898 NCTC 10526 (T) = ATCC 23333 BASE COUNT 192 a 150 c 229 g 147 t 3658 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- G(-GAAA-)C -UCGA-A--U UAAUACC-GC 481 AU-ACA---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----AAAA-- ---GGGGGC- ----A----- 601 --(------- ---CUUG--- ---)------ ------U--| -GCUCU--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GU-GAA-- GA-AGAC-UC --UAU-GGU( -----UAAUA -----C---) CCAU-AA-AC 1081 ---------- -------G-A U-GA-CAUU- A-GCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-UAG-GU -G|-GC-UU- 1261 G-AU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGUU G-GGCUA-GA GUA-----GG U-GA-GAGGG AGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UU- C-GAA..... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.oslons 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella osloensis. ACCESSION No information KEYWORDS No information. SOURCE Moraxella osloensis. ORGANISM Moraxella osloensis. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74897 Former RDP Sids: Mrx.osbens NCTC 10465 (T) = ATCC 19976 NB: former name Moraxella osbensis BASE COUNT 203 a 141 c 227 g 158 t 3647 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- ---|-AU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AU-UUAGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAU-AG-CU C--------- ------GG-- G(-GAAA-)C -UCGA-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUCU--U- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -AU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CA 1021 --GG-GAG-- GA-G-AG-GC --UAA-UGG( U----UAAUA -----C---) CCAU-UA-GA 1081 ---------- -------U-U A-GA-CGUU- A-CCU-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GUG-UAG-GU -G|-GC-UC- 1261 A-UU-AAG|U CAC---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UGUG A-UAC-UGGU GGUGCUA-GA AUA-----UG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--AA-UA CUGACA-CUG AG-A------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AA..... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.lacuna 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella lacunata str. A182 NCTC 11011 (T). ACCESSION No information KEYWORDS No information. SOURCE Moraxella lacunata str. A182 NCTC 11011 (T). ORGANISM Moraxella lacunata. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11011 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74895 NCTC 11011 (T) = ATCC 17967 isolate_name= A182 BASE COUNT 201 a 144 c 228 g 156 t 3647 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GAA- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GG- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UA 541 CG-------- -)-AGA---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UUG-UGG( U----UAAUA -----C---) CUAC-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-UAG-GU -G|-GU-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGG U-GACUA-GA GUA-----GG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-C.. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.lacun2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella lacunata str. A182 ATCC 17967. ACCESSION No information KEYWORDS No information. SOURCE Moraxella lacunata str. A182 ATCC 17967. ORGANISM Moraxella lacunata. REFERENCE 1 AUTHORS Taniguchi,R., Maruyama,A., Misawa,S. and Higashihara,T. TITLE Phylogenetic interrelationships of the genus Moraxella as determined by 16s ribosomal DNA sequencing JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17967 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D64049|g984035 ATCC 17967 = NCTC 11011 (T) isolate_name= A182 BASE COUNT 403 a 328 c 458 g 330 t 2857 others ORIGIN 1 .......... .......... .......... .........A -GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GGA- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------AG-- G(-GAAA-)C -UUAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCU-(-- --------UA 541 CG-------- -)-AGA---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UUG-UGG( U----UAAUA -----C---) CUAC-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-UAG-GU -G|-GU-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGG U-GACUA-GA GUA-----GG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CC-- -------A|G -UC-GU-UGG -GU-CUC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------AGA -CUUAG-UGA 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UGAG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUC-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-C---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AG--UUAC-C AG-CGA---- ---------- ---------- ---U(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GG--A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UC-UC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GGG GUC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C- UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.catar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella catarrhalis.. ACCESSION No information KEYWORDS No information. SOURCE Moraxella catarrhalis. ORGANISM Moraxella catarrhalis. REFERENCE 1 AUTHORS Ban,H.-K.K. and Chua,K.-L. TITLE Analysis of partial 16S ribosomal DNA sequences places Pasteurella anatipestifer within the Cytophaga-Flavobacterium complex JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13736 BASE COUNT 127 a 98 c 149 g 104 t 3898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- -AC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -CCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU -G)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GGAGGG-- GA-AAAG-CU --UAU-GGU( -----UAAUA -----C---) CCAU-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA GAAU--AAAG ---------C 1141 -ACCGGUU-A ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.catarr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella catarrhalis. ACCESSION No information KEYWORDS No information. SOURCE Moraxella catarrhalis. ORGANISM Moraxella catarrhalis. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74903 NCTC 11020 (T) = ATCC 25238 BASE COUNT 202 a 149 c 234 g 158 t 3633 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- -AC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -CCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UUA-UGG( U----UAAUA -----C---) CCAU-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGA U-AACUA-GA GUA-----GG U-GA-GAGGG GAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GACA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-C... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.catar3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella catarrhalis. ACCESSION No information KEYWORDS No information. SOURCE Moraxella catarrhalis. ORGANISM Moraxella catarrhalis. REFERENCE 1 AUTHORS Ban,H.-K. and Chua,K.-L. TITLE Analysis of 16S ribosomal DNA sequences places 'Pasteurella' anatipestifer within the Cytophaga-Flavobacterium-Bacteroides complex JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10876|g506691 ATCC 25238 = NCTC 11020 (T) BASE COUNT 401 a 327 c 458 g 325 t 2865 others ORIGIN 1 .......... .......... .......... .......... .AAAAA(A-U G)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- -AC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -CCAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UUA-UGG( U----UAAUA -----C---) CCAU-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGA U-AACUA-GA GUA-----GG U-GA-GAGGG GAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CC-- -------A|G -UC-GU-UGG -GU-CUU--- ---------- 1681 -(-UU-A-)- ---------- ---------- -A-------- -------AGA -CUUAG-UGA 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UGAG--- -AA----UCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUC-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AG--UUAC-C AG-CGA---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UC-UC-ACCA -GAA-G-UGG 3121 U-UAG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-AU-CA-CC A-CGGU-GGG GUC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGU--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nis.ovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Neisseria ovis str. 199/55 NCTC 11227 (T). ACCESSION No information KEYWORDS No information. SOURCE Neisseria ovis str. 199/55 NCTC 11227 (T). ORGANISM Neisseria ovis. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11227 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74896 NCTC 11227 (T) = ATCC 33078 isolate_name= 199/55 NB: objective synonym Moraxella ovis BASE COUNT 195 a 145 c 229 g 152 t 3655 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUAUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGAUA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CC A--------- ------UC-- C(-GAAA-)G -GAUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UUG-UGG( U----UAAUA -----C---) CCAC-AA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UG- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGA C-AACUA-GA GUA-----GG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GG..... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.cuncul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella cuniculi.. ACCESSION No information KEYWORDS No information. SOURCE Moraxella cuniculi. ORGANISM Moraxella cuniculi. REFERENCE 1 AUTHORS Enright,M.C. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79221|g488367 BASE COUNT 200 a 146 c 230 g 152 t 3648 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- -AC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCCCGC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UG 1021 --GG-GAG-- GA-A-AA-GC --UAA-UAG( C----UAAUA -----C---) CUAU-UA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 C-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGG U-AACUA-GA GUA-----GG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AA..... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrx.caviae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moraxella caviae.. ACCESSION No information KEYWORDS No information. SOURCE Moraxella caviae. ORGANISM Moraxella caviae. REFERENCE 1 AUTHORS Enright,M.C. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79220|g488366 BASE COUNT 197 a 144 c 229 g 156 t 3650 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----G U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- -AC|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------CC-- C(-GAAA-)G -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- ----U----- 601 --(------- ----UUU--- ---)------ ------A--| -GCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-UA 1021 --GG-GAG-- GA-A-AA-GC --UAA-UGG( U----UAAUA -----C---) CCAU-UA-GC 1081 ---------- -------C-C U-GA-CGUU- A-CCU-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGA- GCG-UAG-GU -G|-GU-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGA U-AACUA-GA GUA-----GG U-GA-GAGGG AAG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUCCUG-- ---------- ---------- ---------G 1501 CAU--CA-UA CUGACA-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC........ ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN3c 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN3c.. ACCESSION No information KEYWORDS No information. SOURCE clone JN3c. ORGANISM clone JN3c. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69268|g1177272 BASE COUNT 88 a 63 c 112 g 74 t 4039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGC A-AGCUA-GA GUA-----UG G-GA-GAGGA AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UG- C-GHAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GG-GAU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------UCC -UUUAG-UGG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- AUAA-GUU.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A25t 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A25t.. ACCESSION No information KEYWORDS No information. SOURCE clone A25t. ORGANISM clone A25t. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91448|g987753 BASE COUNT 95 a 66 c 115 g 80 t 4020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GCC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GCU -UUUAG-U.. 1741 .......... .....(.AA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A24otp 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A24otp.. ACCESSION No information KEYWORDS No information. SOURCE clone A24otp. ORGANISM clone A24otp. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91447|g987752 BASE COUNT 92 a 67 c 121 g 80 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGU- 1441 -A-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.calcoa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter calcoaceticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter calcoaceticus. ORGANISM Acinetobacter calcoaceticus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34139 ATCC 33604 = NCTC 10292 NB: NCTC 10292 (Collins seq) not same as ATCC 33604 (Woese lab) BASE COUNT 387 a 329 c 460 g 330 t 2870 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- ---|--C--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CAUU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAN-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CA-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UCCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AAUG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UC --UCU-UAG( U----UAAUA -----C---) CUAA-GAUGA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GNAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|U|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-G-C G-GU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.anitra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter anitratus.. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter anitratus. ORGANISM Acinetobacter anitratus. REFERENCE 1 AUTHORS Ban,H.-K.K. and Chua,K.-L. TITLE Analysis of partial 16S ribosomal DNA sequences places Pasteurella anatipestifer within the Cytophaga-Flavobacterium complex JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13735 BASE COUNT 125 a 102 c 154 g 100 t 3895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|-CU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU -G)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-UAG( A----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA GAAU--UAAG ---------C 1141 -ACCCGCU-U ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.calco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter calcoaceticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter calcoaceticus. ORGANISM Acinetobacter calcoaceticus. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74899 NCTC 10292 = ATCC 33604 NB: NCTC 10292 (Collins seq) not same as ATCC 33604 (Woese lab) BASE COUNT 191 a 145 c 241 g 151 t 3648 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGA----- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-UAG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU G-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-G.. 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.bauma3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter baumannii str. IGSchaub Biol 1 ATCC 15308. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter baumannii str. IGSchaub Biol 1 ATCC 15308. ORGANISM Acinetobacter baumannii. REFERENCE 1 AUTHORS Ban,H.-K. and Chua,K.-L. TITLE Analysis of 16S ribosomal DNA sequences places 'Pasteurella' anatipestifer within the Cytophaga-Flavobacterium-Bacteroides complex JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15308 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10874|g506689 Former RDP Sids: Acn.anitr2 ATCC 15308 = DSM 30008 = NCTC 7844 = CIP 64.8 = CCM 5593 isolate_name= IGSchaub Biol 1 NB: former name Acinetobacter anitratus BASE COUNT 393 a 335 c 475 g 324 t 2849 others ORIGIN 1 .......... .......... .......... .......... AAAAAA(A-U N)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----A----- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-UAG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU G-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -UGG-GG(-A AG-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-G-C G-GU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.bauma2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter baumannii str. IGSchaub Biol 1 DSM 30008. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter baumannii str. IGSchaub Biol 1 DSM 30008. ORGANISM Acinetobacter baumannii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 30008 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81667|g829088 DSM 30008 = NCTC 7844 = ATCC 15308 = CIP 64.8 = CCM 5593 isolate_name= IGSchaub Biol 1 BASE COUNT 373 a 320 c 455 g 311 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-UAG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU G-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-G-C G-GU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.bauman 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter baumannii str. 2208 DSM 30007 (T). ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter baumannii str. 2208 DSM 30007 (T). ORGANISM Acinetobacter baumannii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 30007 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81660|g829087 DSM 30007 (T) = CIP 70.34 = ATCC 19606 isolate_name= 2208 BASE COUNT 373 a 320 c 455 g 311 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-UAG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU G-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-G-C G-GU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.junii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter junii str. 2723/59 DSM 6964 (T). ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter junii str. 2723/59 DSM 6964 (T). ORGANISM Acinetobacter junii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6964 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81664|g829095 DSM 6964 (T) = NCTC 10307 = ATCC 17908 isolate_name= 2723/59 BASE COUNT 373 a 320 c 452 g 314 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAUGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUA UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUG-AGA( C----UAAUA -----C---) UCUU-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.junii2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter junii. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter junii. ORGANISM Acinetobacter junii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81658|g829093 BASE COUNT 373 a 320 c 452 g 314 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAUGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUA UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUG-AGA( C----UAAUA -----C---) UCUU-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---UAGA--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AC--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G21 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G21.. ACCESSION No information KEYWORDS No information. SOURCE clone G21. ORGANISM clone G21. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91273|g987021 BASE COUNT 90 a 65 c 113 g 77 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- AUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.sp590 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter sp. ORGANISM Acinetobacter sp. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81659|g829098 DSM 590 = NCIMB 8250 = ATCC 11171 BASE COUNT 373 a 319 c 454 g 315 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-G C-CUAU---U -AAUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UCA--- 601 --(------- ---CUUG--- ---)------ ----UGA--| -CCUUG--C- G--UUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UC --UCU-UGG( U----UAAUA -----C---) CCAA-GAUGA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K9 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K9.. ACCESSION No information KEYWORDS No information. SOURCE clone K9. ORGANISM clone K9. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91524|g987799 BASE COUNT 90 a 65 c 113 g 76 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-U--AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- AUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN2c 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN2c.. ACCESSION No information KEYWORDS No information. SOURCE clone JN2c. ORGANISM clone JN2c. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69267|g1177271 BASE COUNT 90 a 61 c 112 g 77 t 4036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---C-(KAA- ---C)G-CG- AUAA-GUAGA .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s6 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s6. str. s6. ACCESSION No information KEYWORDS No information. SOURCE str. s6. str. s6. ORGANISM str. s6. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69310|g1181122 isolate_name= s6 BASE COUNT 89 a 63 c 112 g 77 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-NNNNA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN17e 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN17e.. ACCESSION No information KEYWORDS No information. SOURCE clone JN17e. ORGANISM clone JN17e. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69282|g1177267 BASE COUNT 91 a 66 c 118 g 79 t 4022 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-NNNUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CC---- --AC-(KAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Strip3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stripa mine-derived. ACCESSION No information KEYWORDS No information. SOURCE Stripa mine-derived. ORGANISM Stripa mine-derived. REFERENCE 1 AUTHORS Ekendahl,S. and Pedersen,K. TITLE Carbon transformations by attached bacterial populations in granitic groundwater from deep crystalline bed-rock of the Stripa research mine JOURNAL Microbiology 140, 1565-1573 (1994) STANDARD No information REFERENCE 2 AUTHORS Ekendahl,S., Arlinger,J., Stahl,F. and Pedersen,K. TITLE Characterization of attached bacterial populations in deep granitic groundwater from the Stripa research mine by 16S rRNA gene sequencing and scanning electron microscopy JOURNAL Microbiology 140, 1575-1583 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20812|g999472 BASE COUNT 186 a 150 c 226 g 165 t 3649 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UCAG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -GC-CG-UUG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --G--(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-GCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU..(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP752 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP752.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP752. ORGANISM clone JAP752. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09828|g495561 BASE COUNT 68 a 59 c 89 g 55 t 4105 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GG----- -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-G C-CUAU---U -AAUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UCA--- 601 --(------- ---CUUG--- ---)------ ----UGA--| -CCUUG--C- G--UUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K4.. ACCESSION No information KEYWORDS No information. SOURCE clone K4. ORGANISM clone K4. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91519|g987794 BASE COUNT 95 a 62 c 113 g 82 t 4024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-CU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-GACUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-UCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GAC -UUUAG-UGG 1741 CG--CM---- -----(KAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GG-AGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.lwoff3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter lwoffii. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter lwoffii. ORGANISM Acinetobacter lwoffii. REFERENCE 1 AUTHORS Ban,H.-K. and Chua,K.-L. TITLE Analysis of 16S ribosomal DNA sequences places 'Pasteurella' anatipestifer within the Cytophaga-Flavobacterium-Bacteroides complex JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10875|g506690 ATCC 17925 = NCIMB 9020 BASE COUNT 394 a 334 c 470 g 330 t 2848 others ORIGIN 1 .......... .......... .......... .......... AAAAAA(A-A U)U-CAU|-G 61 NCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AACU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GA-GC --UCU-UGG( U----UAAUA -----C---) CCAA-GAUUC 1081 ---------- -------U-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-CA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-G-- 1561 G--AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGG-C AG-CGG---- ---------- ---------- ---C(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GG-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 NUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN16e 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN16e.. ACCESSION No information KEYWORDS No information. SOURCE clone JN16e. ORGANISM clone JN16e. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69281|g1177266 BASE COUNT 94 a 61 c 111 g 77 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-A-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GNNN- NNG-UAG-GU -G|-GC-CA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- -----(KAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GG...... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.lwoff2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter lwoffii. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter lwoffii. ORGANISM Acinetobacter lwoffii. REFERENCE 1 AUTHORS Enright,M.C., Carter,P.C., MacLean,I.A. and McKenzie,H. TITLE Phylogenetic relationships between some members of the genera Neisseria, Acinetobacter, Moraxella, and Kingella based on partial 16S ribosomal DNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 387-391 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74894 NCTC 5866 (T) = DSM 2403 = NCDC KC-76 = ATCC 17986 = ATCC 15309 BASE COUNT 196 a 145 c 237 g 152 t 3646 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CCG-AGA( U----UAAUA -----C---) UCUU-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGUU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUA-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-CA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 G......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.lwoff4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter lwoffii. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter lwoffii. ORGANISM Acinetobacter lwoffii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81665|g829096 DSM 2403 = NCDC KC-76 = ATCC 17986 = ATCC 15309 = NCTC 5866 (T) BASE COUNT 375 a 322 c 452 g 310 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CCG-AGA( U----UAAUA -----C---) UCUU-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-CA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1017 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1017. str. SBR1017. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1017. str. SBR1017. ORGANISM str. SBR1017. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84461|g871582 isolate_name= SBR1017 BASE COUNT 101 a 78 c 129 g 80 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----U U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAUG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CAUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-A C-CUAU---U -AAUG-G-GG 421 -GAC-AA-CA U--------- ------UU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGG------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GN-GU 961 G-U-GU-G-A A-GAA--G-G NC(--UC-GU --)GG-GUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1118 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1118. str. SBR1118. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1118. str. SBR1118. ORGANISM str. SBR1118. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84543|g871664 isolate_name= SBR1118 BASE COUNT 102 a 79 c 126 g 82 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGNC-GGN-A -GGN-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----U U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAUG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CAUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-UUAGG- A-A--UCU-A C-CUAU---U -AAUG-G-GG 421 -GAC-AA-CA U--------- ------UU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--UUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.calco5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter calcoaceticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter calcoaceticus. ORGANISM Acinetobacter calcoaceticus. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81668|g829091 DSM 30009 = ATCC 15567 BASE COUNT 368 a 327 c 456 g 308 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GAUG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UC-- C(-GAAA-)G -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UU --ACC-UGG( U----UAAUA -----C---) CUGG-GAUAA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CUG-C(G 2881 -CGA)GCAG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.lwoffi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter lwoffii.. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter lwoffii. ORGANISM Acinetobacter lwoffii. REFERENCE 1 AUTHORS Ban,H.-K.K. and Chua,K.-L. TITLE Analysis of partial 16S ribosomal DNA sequences places Pasteurella anatipestifer within the Cytophaga-Flavobacterium complex JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13734 BASE COUNT 120 a 105 c 157 g 100 t 3894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAUAGGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUGA UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UC-- C(-GAAA-)G -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GGG(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GGGUUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UU --ACC-UGG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-NUC-C-CA GAAU--UAAG ---------C 1141 -ACCCGCU-U ACUC.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.radres 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter radioresistens str. FO-1 DSM 6976 (T). ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter radioresistens str. FO-1 DSM 6976 (T). ORGANISM Acinetobacter radioresistens. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6976 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81666|g829097 DSM 6976 (T) = IAM 13186 = ATCC 43998 isolate_name= FO-1 BASE COUNT 371 a 322 c 452 g 311 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- ---|-UU--C AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UC-- C(-GAAA-)G -GNNC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUNG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GGA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CCU-AGA( U----UAAUA -----C---) UUUA-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-CA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-GGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCC--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CAC-A(G 2881 -CGA)UGUG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s20 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s20. str. s20. ACCESSION No information KEYWORDS No information. SOURCE str. s20. str. s20. ORGANISM str. s20. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69324|g1181107 isolate_name= s20 BASE COUNT 91 a 64 c 112 g 78 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGM|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU C-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CC---- --AS-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s15 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s15. str. s15. ACCESSION No information KEYWORDS No information. SOURCE str. s15. str. s15. ORGANISM str. s15. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69319|g1181101 isolate_name= s15 BASE COUNT 93 a 64 c 116 g 80 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU C-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GG-AGUA. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter haemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter haemolyticus. ORGANISM Acinetobacter haemolyticus. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81662|g829092 DSM 6962 (T) = NCTC 10305 = ATCC 17906 BASE COUNT 376 a 319 c 450 g 313 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUC-UAG( U----UAAUA -----C---) CUAG-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CGG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU C-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NNUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.johnsn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter johnsonii. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter johnsonii. ORGANISM Acinetobacter johnsonii. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81663|g829094 DSM 6963 (T) = NCTC 10308 = ATCC 17909 BASE COUNT 376 a 319 c 449 g 312 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- -----GAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUU-GGA( U----UAAUA -----C---) UCUA-GGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UU- 1261 U-UU-AAG|U CGG---AUGU G-AAA-UC-C CN-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGG A-AGCUA-GA GUA-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NNUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--NU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0258 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0258. str. B0258. ACCESSION No information KEYWORDS No information. SOURCE str. B0258. str. B0258. ORGANISM str. B0258. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12215|g529294 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0258 BASE COUNT 220 a 183 c 257 g 190 t 3526 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-AGCUA-GA GUG-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU-UUUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.calco4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter calcoaceticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter calcoaceticus. ORGANISM Acinetobacter calcoaceticus. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81661|g829090 DSM 30006 (T) = NCIMB 9029 = NCTC 10694 = CIP 81.08 = ATCC 23055 BASE COUNT 377 a 322 c 448 g 313 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUGAUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAUC AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UU-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUG-AAG( U----UAAUA -----C---) CUUC-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-AGCUA-GA GUG-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.UN1P2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter sp. str. UN1P2. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter sp. str. UN1P2. ORGANISM Acinetobacter sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37348|g1051200 isolate_name= UN1P2 BASE COUNT 371 a 320 c 441 g 315 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUGAUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAUC AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UU-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AR- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GY-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUG-AAG( U----UAAUA -----C---) CUUC-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUR-C-- 1201 AAG-CGUUAM UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-AGCUA-GA GUG-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-KC(-G AA-G)GCAS- -CCAUCUG-- ---------- ---------- ---------K 1501 CCU--AA-CA CUGWCG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AMA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- R-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|K -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-WCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCSC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acn.calco3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acinetobacter calcoaceticus. ACCESSION No information KEYWORDS No information. SOURCE Acinetobacter calcoaceticus. ORGANISM Acinetobacter calcoaceticus. REFERENCE 1 AUTHORS Rainey,F.A., Lang,E. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Acinetobacter JOURNAL FEMS Microbiol. Lett. 124, 349-353 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81657|g829089 DSM 1139 = NCIMB 9205 BASE COUNT 377 a 321 c 448 g 314 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGUC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUGAUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAUC AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CA U--------- ------UU-- C(-GAAA-)G -GAAU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UG 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AU --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-G-GC-UA --CUG-AAG( U----UAAUA -----C---) CUUC-AGAUA 1081 ---------- -------G-U G-GA-CGUU- A-CUC-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-AGCUA-GA GUG-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AAG-GA-U A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCUAA-U CUCAA-AAAG -CC-G-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UU-GC-ACCA -GAA-G-UAG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UA-CC A-CGGU-GUG GCC-GA-UG- ACU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JA23h 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JA23h.. ACCESSION No information KEYWORDS No information. SOURCE clone JA23h. ORGANISM clone JA23h. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69287|g1177258 BASE COUNT 91 a 64 c 109 g 77 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAUUUA -CU-GGGC|G UAAA-GCNN- NNG-UAG-GC -G|-GC-UA- 1261 A-UU-AAG|U CAA---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUCG A-UAC-UGGU U-AGCUA-GA GUG-----UG G-GA-GAGGA UGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-CA CUGACG-CUG AG-G------ -------UG- C-GUAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GG-CCU--- ---------- 1681 -(-UU-G-)- ---------- ---------- -A-------- -------GGC -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.A.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.10.2 TEREDINIBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.10.2 TEREDINIBACTER_SUBGROUP. ORGANISM 2.14.3.10.2 TEREDINIBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbf.hylyts 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbulbifer hydrolyticus str. IRE-31. ACCESSION No information KEYWORDS No information. SOURCE Microbulbifer hydrolyticus str. IRE-31. ORGANISM Microbulbifer hydrolyticus. REFERENCE 1 AUTHORS Gonzalez,J.M., Mayer,F., Moran,M.A., Hodson,R.E. and Whitman ,W.B. TITLE Microbulbifer hydrolyticus gen. nov., sp. nov., and Marinobacterium georgiense gen. nov., sp. nov., two marine bacteria from a lignin-rich pulp mill waste enrichment community JOURNAL Int. J. Syst. Bacteriol. 47 (2), 369-376 (1997) STANDARD No information REFERENCE 2 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58338|g1718232 isolate_name= IRE-31 BASE COUNT 351 a 311 c 435 g 291 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAU -GC-AUAGG- A-A--UCU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(GUAAA-)C -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUAU----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CC --UGU-AAG( U----UAAUA -----C---) CUUG-CA-GG 1081 ---------- -------A-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 G-UU-AAG|C UGG---AUGU G-AAA-GC-C CU-GGA-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA G-AAC-UGGC U-GGCUA-GA GUA-----CG A-GA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGACA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-CC(-G NA-G)NCGA- -CUGCCUG-- ---------- ---------- ---------N 1501 CUC--GA-UA CUGACN-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UC-GU-AGG -GU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -CUUUG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 UG--UUGC-U AG-CAG---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|A 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGAC GGU-C-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCGAA-AAAA -CC-A-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-CA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AANUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2068 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2068. str. SBR2068. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2068. str. SBR2068. ORGANISM str. SBR2068. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84601|g871722 isolate_name= SBR2068 BASE COUNT 95 a 92 c 137 g 67 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 GC-GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|-UA--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CU U--------- ------GG-- G(-GAAA-)C -UUAA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------CA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUGC----- -GU|----AG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SCB111 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SCB11. str. SCB11. ACCESSION No information KEYWORDS No information. SOURCE str. SCB11. str. SCB11. ORGANISM str. SCB11. REFERENCE 1 AUTHORS Rehnstam-Holm,A., Backman,S., Azam,F. and Hagstrom,A. TITLE Specificity of 16S rRNA probes for the detection of heterotrophic bacteria in the sea JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31658|g468757 isolate_name= SCB11 BASE COUNT 387 a 328 c 462 g 317 t 2882 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)UCCAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-AA-C ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAU|-UA--A AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- A-A--UCU-A C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CCU--- 601 --(------- ---UUCG--- ---)------ ----GGG--| -CCUUG--U- G--CUA---- 661 ----UUGG-- AUG---A-|G CCCGC----- -GU|----GA G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GU --GAG-UAG( U----UAAUA -----A---) CUGC-UU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 C-AU-AAG|U UGG---AAGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCU-UUCA A-AAC-UGUG U-GACUA-GA GUG-----CA G-CA-GAGGA UAG-U|GGAA 1381 UU-UCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 GCU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- CUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UAGA--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-A UG-CAG---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAGAG GGU-C-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CU-G-UUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ter.turner 4376 bp RNA RNA 02-JUL-1998 DEFINITION Teredinibacter turnerae str. T7902 ATCC 39867. ACCESSION No information KEYWORDS No information. SOURCE Teredinibacter turnerae str. T7902 ATCC 39867. ORGANISM Teredinibacter turnerae. REFERENCE 1 AUTHORS Distel,D.L., DeLong,E.F. and Waterbury,J.B. TITLE Phylogenetic characterization and in situ localization of the bacterial symbiont of shipworms (Teredinidae: Bivalvia) by using 16S rRNA sequence analysis and oligodeoxynucleotide probe hybridization JOURNAL Appl. Environ. Microbiol. 57, 2376-2382 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 39867 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M64340 (bases 1 to 196) endosymbiont_of= Lyrodus pedicellatus isolate_name= T7902 NB: For all examined positions, this sequence was identical for all of the following symbiont sequences: Teredora maleolus (Turton) strain T8402, Bankia gouldi symbiont strain T7901, and Dicyanthifer manni (Wright) symbiont strain T8602 BASE COUNT 302 a 244 c 377 g 253 t 3200 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...GGGU-GA (--GU----- ---------- ---------- 241 --------AA .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AUC -GC-GUGGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UC-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------GA 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GUGUGU- GA--GC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CNGA-GA-C ACG)--G... .......... .(..CG)--G GAG-GCAAG- C-A---GU-G 901 GGG-AAUAUU G-CWCWAU-- GG-GG-(GAA A)-CCC-UUA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-AG-GU --UGU-ACG( U----UAAUA -----G---) CGUG-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-ACU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUU-U-- 1201 UAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|C UAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUA G-AAC-UGGG U-AACUU-GA GUA-----CA G-CA-GAGGA UAG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 GCU--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -UC-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGG -AUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-UCGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGYAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UAGA--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANGU-U 2221 GG-GG(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ...ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-UG -UA--CAAAG GGU-U-G-C- CA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GUCUA-U CCCAU-AAAA -CA-G-UUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AAA-(UC -AGA-AU)-G UUA-C-GUG- AAUAC-GNU- NCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.A.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.10.3 PSEUDOMONAS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.10.3 PSEUDOMONAS_SUBGROUP. ORGANISM 2.14.3.10.3 PSEUDOMONAS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP501 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP501.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP501. ORGANISM clone JAP501. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09827|g495560 BASE COUNT 66 a 57 c 89 g 55 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UC--(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA---C---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azs.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azospirillum sp. str. AM-53 DSM 1727. ACCESSION No information KEYWORDS No information. SOURCE Azospirillum sp. str. AM-53 DSM 1727. ORGANISM Azospirillum sp. REFERENCE 1 AUTHORS Xia,Y., Embley,T. and O'Donnell,A. TITLE Phylogenetic analysis of Azospirillum by direct sequencing of PCR amplified 16S rDNA JOURNAL Syst. Appl. Microbiol. 17, 197-201 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 1727 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29622|g505523 legacy_attribute= unrelated to other azospirilla and groups with the gamma proteobacteria isolate_name= AM-53 BASE COUNT 376 a 321 c 454 g 310 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUGA-UU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CN---- ---N-(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 UCCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---AU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UNGCC-NUAG G(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G26 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G26.. ACCESSION No information KEYWORDS No information. SOURCE clone G26. ORGANISM clone G26. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91278|g987026 BASE COUNT 93 a 67 c 110 g 76 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CM---- --K--(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-G....... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s27 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s27. str. s27. ACCESSION No information KEYWORDS No information. SOURCE str. s27. str. s27. ORGANISM str. s27. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69331|g1181114 isolate_name= s27 BASE COUNT 94 a 67 c 108 g 76 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- --S--(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K2.. ACCESSION No information KEYWORDS No information. SOURCE clone K2. ORGANISM clone K2. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91517|g987792 BASE COUNT 95 a 70 c 113 g 77 t 4021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CM---- --K--(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GG-AGUAC 1801 GCC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G35 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91287|g987035 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 95 a 65 c 101 g 73 t 4042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA ACU-GGGC|G UAAA-NNNN- NCG-U..... ..|....UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAAAGC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GUAUGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CM---- ---K-(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.tolaasi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas tolaasii. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas tolaasii. ORGANISM Pseudomonas tolaasii. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84028|g1256184 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 372 a 326 c 455 g 306 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAGCAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UGC( C----UAAUA -----C---) GUAA-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-CCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGUU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GN -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UNCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A30P 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A30P.. ACCESSION No information KEYWORDS No information. SOURCE clone A30P. ORGANISM clone A30P. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91453|g987758 BASE COUNT 94 a 71 c 118 g 78 t 4015 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU CC-GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- ---S-(UAA- ---C)G-CA- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A29mn 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A29mn.. ACCESSION No information KEYWORDS No information. SOURCE clone A29mn. ORGANISM clone A29mn. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91452|g987757 BASE COUNT 95 a 71 c 117 g 77 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K3.. ACCESSION No information KEYWORDS No information. SOURCE clone K3. ORGANISM clone K3. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91518|g987793 BASE COUNT 93 a 68 c 112 g 75 t 4028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CM---- --K--(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GG-A.... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G18 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G18.. ACCESSION No information KEYWORDS No information. SOURCE clone G18. ORGANISM clone G18. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91612|g987728 BASE COUNT 92 a 68 c 109 g 74 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CM---- --K--(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP412 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP412.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP412. ORGANISM clone JAP412. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09773|g495525 BASE COUNT 66 a 59 c 89 g 55 t 4107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -UCUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluore6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84013|g1256188 IAM 12022 = IFO 14160 = CIP 69.13 = NCTC 10038 = NCIMB 9046 (T) = NCDO 1524 = DSM 50090 = ATCC 13525 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 384 a 340 c 478 g 325 t 2849 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGAG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-U-A A-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 G-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS3_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.3. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.3. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48288|g854395 isolate_name= S3.3 BASE COUNT 76 a 59 c 98 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-UAC( C----UAAUA -----C---) GUAA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS1_1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S1.1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S1.1. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48272|g854381 isolate_name= S1.1 BASE COUNT 77 a 59 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-UAC( C----UAAUA -----C---) GUAA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS329 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.29. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.29. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48287|g854394 isolate_name= S3.29 BASE COUNT 77 a 59 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-UAC( C----UAAUA -----C---) GUAA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS3_8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.8. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.8. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48291|g854398 isolate_name= S3.8 BASE COUNT 77 a 59 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-UAC( C----UAAUA -----C---) GUAA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS3_1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.1. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48285|g854392 isolate_name= S3.1 BASE COUNT 77 a 59 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-UAC( C----UAAUA -----C---) GUAA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G33 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G33.. ACCESSION No information KEYWORDS No information. SOURCE clone G33. ORGANISM clone G33. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91285|g987033 BASE COUNT 97 a 67 c 112 g 70 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC G-AGCUA-GA GUA-----UG GAUA-GAGGG UGGAU|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UA-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCGCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA UA-AA-CU-- -------A|G -CU-GU-ACA -CG-GG---- ---------- 1681 -(UUC-AC)A G--------- ---------- ---------- -------AAC -UUGGG-UGG 1741 CG--CC---- --K--(-AA- ---C)G-CA- WUAA-GUUAW C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G36 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G36.. ACCESSION No information KEYWORDS No information. SOURCE clone G36. ORGANISM clone G36. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91288|g987036 BASE COUNT 92 a 64 c 111 g 73 t 4036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-UGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GYGH- GHGUAAG-GU -G|-GU-UM- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC G-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CM---- --K--(-AA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0623 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0623. str. B0623. ACCESSION No information KEYWORDS No information. SOURCE str. B0623. str. B0623. ORGANISM str. B0623. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12222|g529301 geog_source= Savannah R. near near Aiken,SC, 244 m deep biol_source= Middendorf aquifer isolate_name= B0623 BASE COUNT 213 a 188 c 258 g 178 t 3539 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .........C CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AN-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGN 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----NA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-N C-U---CG-U |GU-C(-GUG A)-GAUNU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-NAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-NAG-GA-G A-CU-N-CCG --GU(-GN-C AN)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGN-C-GG -UA--CAGAG GGU-U-N-C- CA-ANC-C(C 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.corruga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas corrugata. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas corrugata. ORGANISM Pseudomonas corrugata. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84012|g1256182 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 370 a 323 c 457 g 304 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GUGA--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG C--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCAAC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG--AG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP415 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP415.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP415. ORGANISM clone JAP415. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09775|g495527 BASE COUNT 65 a 61 c 92 g 54 t 4104 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GC-AG-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CACGGGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCUGG UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK199 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK199.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK199. ORGANISM clone SMK199. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78639|g509480 BASE COUNT 103 a 84 c 132 g 81 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .........G CG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGA- 361 -A-CN-GG-U GAGG---AAU -GC-UUGGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UA-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UC--(-- --------UA 541 CG-------- -)-GGN---- ---------- ----NNNN-- ---NGGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCCAA----- -GC|-----G G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUA-AG-CG 1021 --AG-GAG-- GA-A-GG-UU --CGU-CAC( C----UAAUA -----C---) GUGG-CG-GA 1081 ---------- -------A-U U-GA-CGUU- A-CUG-C... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.amygdal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas amygdali. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas amygdali. ORGANISM Pseudomonas amygdali. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84007|g1256181 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 363 a 326 c 457 g 300 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--GC-A--G C----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGG-UA (--CU----- ---------- ---------- 241 --------CG -)UA-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GUG- -GC|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG C--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GUAAA- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA ----CC---) GUGA-UU-GU 1081 ---------- -------U-U U-AA-CGUU- A-CCC-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGAGUNC 1801 GNC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-ACC G-GU-GA-CC A-CGGU-GUG AUC-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.caripap 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas caricapapayae. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas caricapapayae. ORGANISM Pseudomonas caricapapayae. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84010|g1246381 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 365 a 328 c 460 g 303 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-A--G C----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GUG- -GC|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG C--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(CAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUGA-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syring5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syringae. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syringae. ORGANISM Pseudomonas syringae. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84026|g1256183 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 367 a 328 c 456 g 302 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAGC 121 G--GC-A--G C----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CGGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GUG- -GC|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG C--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UN-AG-( GU-AAU-UG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(CAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUAA-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GGA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A26ou 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A26ou.. ACCESSION No information KEYWORDS No information. SOURCE clone A26ou. ORGANISM clone A26ou. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91449|g987754 BASE COUNT 99 a 71 c 116 g 77 t 4013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A27u 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A27u.. ACCESSION No information KEYWORDS No information. SOURCE clone A27u. ORGANISM clone A27u. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91450|g987755 BASE COUNT 98 a 70 c 114 g 77 t 4017 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Schroll,G., Denner,E.B.W., Rolleke,S., Lubitz,W. and Busse,H.J. TITLE Characterization of a new Pseudomonas isolate, capable of accumulating polyesters of medium chain length 3-hydroxyalkanoic acids JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94311|g1134880 BASE COUNT 130 a 103 c 149 g 110 t 3884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)...C-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUAU-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC G-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUWACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU--A)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CU-(-AA- ---C)G-CA- UUAA-GUUGA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.chlraph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas chlororaphis. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas chlororaphis. ORGANISM Pseudomonas chlororaphis. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84011|g1256187 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 380 a 340 c 480 g 315 t 2861 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--G C----GGUA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-UG (--CU----- ---------- ---------- 241 --------U. .)........ U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --ACU-UAC( C----UAAUA -----C---) GUGA-GU-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUC-----UG G-UA-GAGGG UGG-U|AGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAN-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GC-CU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG GA-UUGG--- UG-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- G--------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--GUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCNAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG N--NN-NNN- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.aureofa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas aureofaciens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas aureofaciens. ORGANISM Pseudomonas aureofaciens. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84008|g1256185 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 312 c 443 g 293 t 2975 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- -----GAGAG A--------- ---------- ---------- ---------- 181 ---------- ---------- -AGNAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-NG-( GU-AAN-GG) -C-NNACC-U A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --ACU-UAC( C----UAAUA -----C---) GUGA-GU-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----GUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---GG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---CAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAN -CC-G-AUC- CUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- G)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syring1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syringae str. 31R-1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syringae str. 31R-1. ORGANISM Pseudomonas syringae. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24786 isolate_name= 31R-1 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 288 a 245 c 347 g 239 t 3257 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ...UUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GN-GC-(GAA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUGA-UU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGUGGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CANAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGGG-- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA--G| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---AU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syring3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syringae str. 31R-1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syringae str. 31R-1. ORGANISM Pseudomonas syringae. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24786 isolate_name= 31R-1 BASE COUNT 185 a 166 c 223 g 148 t 3654 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ....GG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGUGGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CANAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGGG-- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA--G| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---AU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE8 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26260|g498394 library_source= unidentified soil bacterium from soybean field BASE COUNT 67 a 68 c 85 g 58 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CCC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CGC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluore5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens str. MS1650. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens str. MS1650. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24788|g406104 isolate_name= MS1650 BASE COUNT 185 a 166 c 219 g 149 t 3657 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ....GG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CANAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CCC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluore2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens str. MS1650. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens str. MS1650. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24788|g406104 isolate_name= MS1650 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 290 a 249 c 350 g 242 t 3245 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... ......GGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- NN-NC-(GAA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UG(--UU-CG --)GAAUUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-UAC( C----UAAUA -----C---) GUGA-UU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CANAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CCC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluores 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11286 (bases 1 to 194) IAM 12022 = IFO 14160 = CIP 69.13 = NCTC 10038 = NCIMB 9046 (T) = NCDO 1524 = DSM 50090 = ATCC 13525 NB: 456r-477r very different from Ps.fluore3 seq. BASE COUNT 166 a 138 c 189 g 126 t 3757 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UKA UCYA|-GCCR UGCC-GC-GU 961 G-U-GU-G-K A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UB 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UWAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CAUG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUN-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ......GG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- YA-AGC-U(U 2881 -CGA)GGUG- ---------- GA-UCUAA-U CCCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.taetrol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas taetrolens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas taetrolens. ORGANISM Pseudomonas taetrolens. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84027|g1256196 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 386 a 339 c 474 g 328 t 2849 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGU-UA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUUUAAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-C-CA G--A--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- --UG-(CAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-AGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS126 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S1.26. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S1.26. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48274|g854383 isolate_name= S1.26 BASE COUNT 79 a 58 c 95 g 68 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--AUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS1_6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S1.6. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S1.6. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48278|g854387 isolate_name= S1.6 BASE COUNT 76 a 59 c 98 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAC( U----UAAUA -----C---) GUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS2_5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S2.5. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S2.5. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48284|g854391 isolate_name= S2.5 BASE COUNT 76 a 59 c 98 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAC( U----UAAUA -----C---) GUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS152 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S1.51. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S1.51. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48277|g854386 isolate_name= S1.51 BASE COUNT 77 a 59 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAC( U----UAAUA -----C---) GUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS3_9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.9. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.9. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48428|g854380 isolate_name= S3.9 BASE COUNT 75 a 61 c 97 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --CGU-AAC( U----UAAUA -----C---) GUUG-CU-GU 1081 ---------- -------U-U U-AC-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS1_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S1.3. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S1.3. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48275|g854384 isolate_name= S1.3 BASE COUNT 75 a 58 c 98 g 69 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AAC( U----UAAUA -----C---) GUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spBB61 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. BB61. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. BB61. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48267|g854379 isolate_name= BB61 BASE COUNT 77 a 60 c 96 g 67 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CCA---- 661 ----UUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --AGU-AGC( U----UAAUA -----C---) GAUG-CU-AC 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluore3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24790 ATCC 13525 = IAM 12022 = IFO 14160 = CIP 69.13 = NCTC 10038 = NCIMB 9046 (T) = NCDO 1524 = DSM 50090 NB: nucs beyond 1131 removed (~20=UAGUAAUCGCGAAUCACAA); no reasonable fit to pattern 456r-477r very different from Ps.fluores seq. This seq directly submitted to RDP by AR Edwards BASE COUNT 297 a 243 c 345 g 244 t 3247 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-.C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UC-A A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC.....(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fluore4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fluorescens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fluorescens. ORGANISM Pseudomonas fluorescens. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24790 ATCC 13525 = IAM 12022 = IFO 14160 = CIP 69.13 = NCTC 10038 = NCIMB 9046 (T) = NCDO 1524 = DSM 50090 BASE COUNT 211 a 177 c 243 g 171 t 3574 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ....GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AA-|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UC-A A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C -UUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UAG-(UA -AUC-GC)-G AAU-CACAA. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS3_6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S3.6. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S3.6. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48290|g854397 isolate_name= S3.6 BASE COUNT 77 a 59 c 95 g 68 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCCAGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -ARA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.synxant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas synxantha. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas synxantha. ORGANISM Pseudomonas synxantha. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84025|g1256195 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 382 a 338 c 480 g 325 t 2851 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-UA-CGUU- A-CCG-G-CA G-AA--UAAG ---------C 1141 -ACCGGAU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -ANA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GG-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.mucidol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas mucidolens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas mucidolens. ORGANISM Pseudomonas mucidolens. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84017|g1246384 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 382 a 340 c 474 g 328 t 2852 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-U-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --UG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-C-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-ANNG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAA- GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.azotofo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas azotoformans. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas azotoformans. ORGANISM Pseudomonas azotoformans. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84009|g1256186 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 386 a 338 c 473 g 325 t 2854 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC--GA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-U-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC -----UA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 C-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UC-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-U G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A31m 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A31m.. ACCESSION No information KEYWORDS No information. SOURCE clone A31m. ORGANISM clone A31m. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91454|g987759 BASE COUNT 93 a 67 c 109 g 76 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC U-GACUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -UUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syring4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syringae str. A501. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syringae str. A501. ORGANISM Pseudomonas syringae. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24787|g406103 isolate_name= A501 BASE COUNT 200 a 173 c 230 g 153 t 3620 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .........U G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA C-GACA-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AAA------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AGC 3001 GC-GAA-(UC -AGA-A.).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.syring2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas syringae str. A501. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas syringae str. A501. ORGANISM Pseudomonas syringae. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24787|g406103 isolate_name= A501 NB: This seq directly submitted to RDP by AR Edwards BASE COUNT 300 a 246 c 349 g 241 t 3240 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... ...CUA---- 661 ----UCAG-- AUG---A-|G CCUNG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GN-GC-(GAA A)--CG-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAA( U----UAAUA -----C---) UUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA C-GACA-CUG AG-G------ -------UG- C-GAAA--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AAA------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G----C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AGC 3001 GC-GAA-(UC -AGA-A.).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spS2_1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. S2.1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. S2.1. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48279|g854388 isolate_name= S2.1 BASE COUNT 77 a 58 c 95 g 70 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( UU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) UUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.agarici 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas agarici. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas agarici. ORGANISM Pseudomonas agarici. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84005|g1246380 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 373 a 323 c 455 g 300 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCGG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUN( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UG- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC C-AGCUA-GA GUA-----GG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-AC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GUU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AAUG--- -AA----UCU 1981 -UCC-A--(- GAGA-)-UGG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---GAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-ANC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- AGU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fm.oryzhab 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavimonas oryzihabitans str. L-1 IAM 1568. ACCESSION No information KEYWORDS No information. SOURCE Flavimonas oryzihabitans str. L-1 IAM 1568. ORGANISM Flavimonas oryzihabitans. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. 47, 249-251 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84004|g1256159 IAM 1568 = KS 0036 = JCM 2952 = DSM 6835 (T) = AJ 2197 isolate_name= L-1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 384 a 343 c 480 g 320 t 2849 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-U-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----GAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UGG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-AGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-UA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84020|g1256191 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 386 a 344 c 476 g 321 t 2849 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-U-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-CA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UGG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AAC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spBB49 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. BB49. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. BB49. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48265|g854378 isolate_name= BB49 BASE COUNT 77 a 61 c 97 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GCA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fulva1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fulva. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fulva. ORGANISM Pseudomonas fulva. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84015|g1256189 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 382 a 341 c 474 g 325 t 2854 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CC-UG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--NGAAGA 1921 A-CCUUA-CC AGG-CC-UUN ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UUC-A--(- GNGA-)-UGG -U-AUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-U--ACA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---AU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida str. mt-2. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida str. mt-2. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Zhou,J., Weller,R. and Tiedje,J. TITLE The phylogeny of aerobic and microaerophilic BTEX degrading bacteria as determined by analysis of 16S ribosomal RNA gene sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L28676|g453512 legacy_attribute= biovar:PaW1 isolate isolate_name= mt-2 BASE COUNT 340 a 295 c 420 g 275 t 3046 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GA-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida str. PB4. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida str. PB4. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Yamamoto,S. and Harayama,S. TITLE PCR amplification and direct sequencing of gyrB genes with universal primers and its application to the detection and taxonomic analysis of Pseudomonas putida strains JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37925|g531255 isolate_name= PB4 BASE COUNT 339 a 295 c 420 g 275 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Yamamoto,S. and Harayama,S. TITLE PCR amplification and direct sequencing of gyrB genes with universal primers and its application to the detection and taxonomic analysis of Pseudomonas putida strains JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37923|g531253 BASE COUNT 343 a 294 c 417 g 275 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Yamamoto,S. and Harayama,S. TITLE PCR amplification and direct sequencing of gyrB genes with universal primers and its application to the detection and taxonomic analysis of Pseudomonas putida strains JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37924|g531254 BASE COUNT 338 a 294 c 420 g 277 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida str. F1. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida str. F1. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Zhou,J., Chee-Sanford,J.C., Weller,R. and Tiedje,J.M. TITLE The phylogeny of five well-studied, aerobic, toluene-degrading bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37365|g567853 isolate_name= F1 BASE COUNT 347 a 309 c 427 g 285 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|C-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGC-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.putida6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas putida.. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas putida. ORGANISM Pseudomonas putida. REFERENCE 1 AUTHORS Moller,S., Pedersen,A.R., Poulsen,L.K., Arvin,E. and Molin,S . TITLE Activity and three dimensional distribution of Toluene-degrading P. putida in a multispecies biofilm assessed by quantative in situ hybridization and scanning compound laser microscopy JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93997|g1103613 BASE COUNT 376 a 343 c 477 g 328 t 2852 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----G---| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A N|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGNC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)NCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCACAANAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU UAA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGNGG-A-C G-GU-UA-CC A-CUUU-AUG AUU-CA-UG- ACU-GGGGCU 3301 G---ACA-CA GGUG-CUGCA UGGCU-GUCG U(CAG-C)UC GUGUCG--UG AGAUGUUGGG 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.luteola 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas luteola. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas luteola. ORGANISM Pseudomonas luteola. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y., Oyaizu,H. and Matsumoto,S. TITLE Transfer of Chryseomonas luteola (Kodama et al. 1985) Holmes et al. 198 7 and Flavimonas oryzihabitans (Kodama et al. 1985) Holmes et al. 1987 to the genus Pseudomonas as Pseudomonas luteola comb. nov. and Pseudomonas oryzihabitans comb. nov. respective JOURNAL Unpublished (1996) STANDARD No information REFERENCE 2 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84002|g1256158 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 384 a 350 c 476 g 316 t 2850 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCU-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-CG --)GG-UCGU AAA--GCAC| UUUA-AG-CU 1021 --GG-GAG-- GA-A-GG-GU --UGU-AAC( C----UAAUA -----C---) GUUG-CA-GC 1081 ---------- -------U-U U-GA-CGUU- A-CCA-G-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-GU-AAG|U UGA---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGCC U-GGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--UGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AC)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-NC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2051 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2051. str. SBR2051. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2051. str. SBR2051. ORGANISM str. SBR2051. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84587|g871708 isolate_name= SBR2051 BASE COUNT 102 a 85 c 127 g 78 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGN-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGCG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GNC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.flavesc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas flavescens str. B62 (T) NCPPB 3063. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas flavescens str. B62 (T) NCPPB 3063. ORGANISM Pseudomonas flavescens. REFERENCE 1 AUTHORS Hildebrand,D.C., Palleroni,N.J., Hendson,M., Toth,J. and Johnson,J.L. TITLE Pseudomonas flavescens sp. nov., isolated from walnut blight cankers JOURNAL Int. J. Syst. Bacteriol. 44, 410-415 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01916 geog_source= Orinda,CA biol_source= walnut tree canker tissue isolate_name= B62 (T) BASE COUNT 386 a 338 c 481 g 324 t 2847 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UUU-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( C----GAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CAG-GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stramin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas straminea. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas straminea. ORGANISM Pseudomonas straminea. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84023|g1256193 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 384 a 343 c 473 g 326 t 2850 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-N-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 U-GG-GAA-- GA-A-GG-GU --UUU-AGA( U----UAAUA -----C---) UCUG-CA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(----C ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-UC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AGGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A28t 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A28t.. ACCESSION No information KEYWORDS No information. SOURCE clone A28t. ORGANISM clone A28t. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91451|g987756 BASE COUNT 95 a 71 c 118 g 73 t 4019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----GG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--CA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UG. 1741 .......... .....(.AA- ---C)G-GA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.alcalig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas alcaligenes. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas alcaligenes. ORGANISM Pseudomonas alcaligenes. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84006|g1246382 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 388 a 344 c 476 g 318 t 2850 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAGN GACNNN---- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 C--------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GC-AAG|U UGG---AGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UCCA A-AAC-UACU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- UAAAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CUGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JA21gh 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JA21gh.. ACCESSION No information KEYWORDS No information. SOURCE clone JA21gh. ORGANISM clone JA21gh. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69285|g1177256 BASE COUNT 94 a 67 c 108 g 73 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCNN- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGCU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUUGA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s17 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s17. str. s17. ACCESSION No information KEYWORDS No information. SOURCE str. s17. str. s17. ORGANISM str. s17. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69321|g1181103 isolate_name= s17 BASE COUNT 92 a 69 c 113 g 74 t 4028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-AAG|U UGGA--AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGCU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GG-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- --S--(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GG...... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s19 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s19. str. s19. ACCESSION No information KEYWORDS No information. SOURCE str. s19. str. s19. ORGANISM str. s19. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69323|g1181105 isolate_name= s19 BASE COUNT 94 a 68 c 108 g 74 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......AAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-AAG|U UGG---AAGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCU-UUCA A-AAC-UGCU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s25 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s25. str. s25. ACCESSION No information KEYWORDS No information. SOURCE str. s25. str. s25. ORGANISM str. s25. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69329|g1181112 isolate_name= s25 BASE COUNT 94 a 69 c 108 g 73 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......AAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGCU G-AGCUA-GA GUA-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -CUUAG-UGG 1741 CG--CA---- --S--(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0267 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0267. str. B0267. ACCESSION No information KEYWORDS No information. SOURCE str. B0267. str. B0267. ORGANISM str. B0267. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12217|g529296 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0267 BASE COUNT 213 a 189 c 256 g 176 t 3542 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ......UUAA UC-GGAAUUA -CU-GNAC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --NU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGG-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0251 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0251. str. B0251. ACCESSION No information KEYWORDS No information. SOURCE str. B0251. str. B0251. ORGANISM str. B0251. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12213|g529292 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0251 BASE COUNT 215 a 196 c 265 g 175 t 3525 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .........C CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCC A-AAC-UGGC G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 ANC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CAU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)N-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G NU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-N-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CN--GGGC- 2821 N-ACA-CA-C GUG--CNACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-GAAA -CC-G-AUC- GUAGUCCGGN 2941 U-CGCAGUC- (UNCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP417 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP417.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP417. ORGANISM clone JAP417. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09774|g495526 BASE COUNT 64 a 57 c 90 g 55 t 4110 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ....C-GGAG 121 U--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--C------ ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AGU|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -UGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)- -GGAC-G--U AAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAG-- ---GCAGGG- GA---C---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.mendoci 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas mendocina. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas mendocina. ORGANISM Pseudomonas mendocina. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59154 BASE COUNT 372 a 326 c 460 g 309 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 GU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCANGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GR-GC --AUG-UAA( CGY--UAAUA ---CCG---) UURC-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCR-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----CG G-UA-GAGGG URG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CYACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -RW-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAW -YUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CACC--- ---------- ---------- ---G(---CU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-NG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.mendoc6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas mendocina. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas mendocina. ORGANISM Pseudomonas mendocina. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84016|g1256197 Former RDP Sids: Ps.mendo6 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 382 a 340 c 478 g 324 t 2852 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-U C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 GU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GA-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUN -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--NGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(----C ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCUGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2111 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2111. str. SBR2111. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2111. str. SBR2111. ORGANISM str. SBR2111. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84635|g871756 isolate_name= SBR2111 BASE COUNT 97 a 86 c 131 g 79 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGN-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 GU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-UU- CGA------- -----UC-AU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-A ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CU(--CU-CG --)GG-UCGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.NF13 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. NF13. str. NF13. ACCESSION No information KEYWORDS No information. SOURCE str. NF13. str. NF13. ORGANISM str. NF13. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79389 (bases 1 to 380) isolate_name= NF13 BASE COUNT 278 a 239 c 342 g 228 t 3289 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAU -GC-CUAGG- A-A--ACU-G C-CUGG---- -AUUG-G-GG 421 -GAC-AA-CG U--------- ------U--- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UKA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-NU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCD-A ACUUC-G..( .......... .........) .......... |......... 1201 .......... .......... ........|. ..AA-GCGC- GCG-UAG-GY -G|-GU-UU- 1261 G-UH-AAG|U UGG---AUGU G-AAA-C--C CC--GG-C(- UC-A)A-CCU -GN-N-ACU- 1321 -GCAU-CCD- A-AAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCDG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-KAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GUCGA C|D|G-CCU- D-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .........C ---AGAG--- --A----CU- 1981 -UCC-A--(- GAGA-)-UGG -A-UAGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-UG-ACA |---C|A--G 2161 GU-GC--B-A UG|G-CUG-- UCG-UCD|-N --U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUMA -GU)-CC-GU AA-------- CGAG-C--GC WACCC-UU-G |-UC--NUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -H-AGUC-AU CAU-G----- CUUAC-G-GC -GU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGD-K-G-C- KA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-CCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUR- AAUAC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Stanier 220 ATCC 17587. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Stanier 220 ATCC 17587. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17587 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25431|g1142678 isolate_name= Stanier 220 BASE COUNT 368 a 327 c 459 g 302 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutz14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Zobell ATCC 14405. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Zobell ATCC 14405. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14405 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26420|g1142694 isolate_name= Zobell isolate_name= ZoBell BASE COUNT 368 a 326 c 460 g 302 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Stanier 224 ATCC 17591. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Stanier 224 ATCC 17591. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17591 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26261|g1142686 isolate_name= Stanier 224 BASE COUNT 368 a 326 c 459 g 303 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-UU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutz13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. ST27MN3. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. ST27MN3. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26419|g1142693 isolate_name= ST27MN3 BASE COUNT 369 a 327 c 458 g 302 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. 19SMN4 DSM 6084. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. 19SMN4 DSM 6084. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. 16S rRNA gene sequence analysis relative to genomovars of JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 6084 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22426|g1142654 isolate_name= 19SMN4 BASE COUNT 369 a 327 c 458 g 302 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAU---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----AUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2073 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2073. str. SBR2073. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2073. str. SBR2073. ORGANISM str. SBR2073. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84605|g871726 isolate_name= SBR2073 BASE COUNT 93 a 88 c 130 g 71 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-UU--A CCAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGG---AAU -GC-CUGGG- A-A--UCU-G C-CUGU---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----ACAG-- AUG---A-|G CCCAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. AN11. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. AN11. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25280|g1142677 isolate_name= AN11 BASE COUNT 371 a 326 c 456 g 303 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26415|g1142689 DSM 50227 = ATCC 11607 BASE COUNT 371 a 328 c 456 g 301 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. AN10. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. AN10. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22427|g1142655 isolate_name= AN10 BASE COUNT 372 a 326 c 456 g 302 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AUU-AAC( C----UAAUA -----C---) GUUA-GU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGA---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC A-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutz11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. LS401. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. LS401. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. 16S rRNA gene sequence analysis relative to genomovars of JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26417|g1142691 isolate_name= LS401 BASE COUNT 363 a 332 c 465 g 296 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC----- -----AGCG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CCGG---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----CCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGUC U-GACUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.baleari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas balearica str. SP1402 DSM 6083 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas balearica str. SP1402 DSM 6083 (T). ORGANISM Pseudomonas balearica. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 6083 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26418|g1142692 isolate_name= SP1402 BASE COUNT 362 a 332 c 466 g 296 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC----- -----AGCG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CCGG---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CU C--------- ------GG-- G(-GAAA-)C -UCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCG--C- G--CUA---- 661 ----CCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGUC U-GGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.mendoc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas mendocina str. KR. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas mendocina str. KR. ORGANISM Pseudomonas mendocina. REFERENCE 1 AUTHORS Zhou,J., Chee-Sanford,J.C., Weller,R. and Tiedje,J.M. TITLE The phylogeny of five well-studied, aerobic, toluene-degrading bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37366|g567854 isolate_name= KR BASE COUNT 348 a 316 c 421 g 284 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-CC-- UGCC-GCC-A -GCC-CU--A ACAC-AU-CA A-GUC-GAGC 121 G--GC----- -----UGCG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGU-CC (--UU----- ---------- ---------- 241 --------U- -)GG-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UCCU---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CU C--------- ------GG-- C(-GAAA-)- -CCGA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UCC--- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU--AA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGCCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GC-AAG|U UGG---AGGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCC-UCCA A-AAC-UACU A-GGCUA-GA GUA-----UG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- U-AA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutz10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Stanier 419 DSM 50238. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Stanier 419 DSM 50238. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 50238 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26416|g1142690 DSM 50238 = ATCC 17832 isolate_name= Stanier 419 BASE COUNT 368 a 330 c 461 g 297 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-CG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CCU 1981 -GCC-A--(- GAGA-)-UGG -C-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0253 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0253. str. B0253. ACCESSION No information KEYWORDS No information. SOURCE str. B0253. str. B0253. ORGANISM str. B0253. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12214|g529293 geog_source= Savannah R. near Aiken,SC, 91 m deep biol_source= Congaree aquifer isolate_name= B0253 BASE COUNT 218 a 192 c 255 g 176 t 3535 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-NN- 1561 NN-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|N -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|C-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C N)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-NC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--NC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-N-CCG --GU(-GA-C AN)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CACAG GGU-U-G-C- CA-ANC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. DNSP21 DSM 6082. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. DNSP21 DSM 6082. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 6082 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26414|g1142688 isolate_name= DNSP21 BASE COUNT 368 a 327 c 460 g 301 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCG-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutz12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84024|g1256194 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 296 c 420 g 276 t 3041 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAGC AGAA------ ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AU---- ---|-UCAGC AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--CCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-NG-( GU-AAN-GG) -C-NNACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)NA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-ACAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----NUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-NG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-A.. 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.odoratus 4376 bp RNA RNA 30-JAN-1992 DEFINITION Myroides odoratus. subsp. was Flavobacterium odoratum; 16S ribosomal RNA; ribosomal RNA small subunit. ACCESSION M58777 KEYWORDS 16S ribosomal RNA; ribosomal RNA small subunit. SOURCE Myroides odoratus. subsp. was Flavobacterium odoratum. ORGANISM Myroides odoratus. REFERENCE 1 (bases 1 to 1468) AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the flavobacterial phylum JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 4651 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58777 BASE COUNT 397 a 290 c 412 g 346 t 2931 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~nuacgaUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UAGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAG- 121 g--gg----- -----uaua- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----gAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --cuag---- -----ag--- acCG-GCGG- 361 -A-UG-GG-U GAGU---AA- CGC-GUAUGc A-A--CCU-N C-CUUU---U -A-CA-G-GG 421 -GAA-UA-GC C--------- ------cg-g a(-gaaau)u cggau-u--a augcucc-au 481 gg-uuu---- ---------- ---------- ---------- ---aua-(-- --------ug 541 aa-------- -)-ugg---- ---------- ----cauc-- ---guuuru- au--aa---- 601 --(------- ---uaaa--- ---)------ -----ga--| -uuuau--c- g--gua---- 661 ----aaag-- aug---g-|g caugc----- -gu|----au c--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(--cuaug --)GA-UUGU AAA--CUGC| NUU---U-GU 1021 --AC-G-G-- GA-A-GA-AA --UGU-AAU( U----ACGUG U----A---) AUUA------ 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGNNN-A) U-A-C-GGAG |-NAUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-GU-UCG -GU-UU---- ---------- 1681 -(U---CG)- ---------- ---------- ---------- -------GA- -CUGAG-UGG 1741 CU--NA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UNA A-A-UG|--- ---------U ---AGAU--- -UG----ACA 1981 -GGU-U--(- UAGA-)-GAU -A-GACU--- UU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AC---| AAU-UU-ACA |----|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-GC-A AA)-CCG-U- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAC-G-GC-C NNUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-GCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AG--CC)-A UGAUCCGGUG AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGGA A--GC-cng- gn-gu-accu -gaa-g-ucg 3121 g-ucg-c-cg caa-gg---- ---------- ---------- -----(---- -agcu----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --gccu-a-g g-gu-aa-aa c-uggu-aac uag-gg-c-- -------~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.odoratus 4376 bp RNA RNA 25-NOV-1996 DEFINITION Myroides odoratus. subsp. was Flavobacterium odoratum; 16S ribosomal RNA. ACCESSION D14019 KEYWORDS 16S ribosomal RNA. SOURCE Myroides odoratus. subsp. was Flavobacterium odoratum. ORGANISM Myroides odoratus. REFERENCE 1 (sites) AUTHORS Nakagawa,Y. and Yamasato,K. TITLE complex Emendation of the genus Cytophaga and transfer of Cytophaga agarovorans and Cytophaga salmonicolor to Marinilabilia gen. nov.: phylogenetic analysis of the Flavobacterium-Cytophaga JOURNAL Int. J. Syst. Bacteriol. 46, 599-603 (1996) STANDARD No information REFERENCE 2 (bases 1 to 1286) AUTHORS Nakagawa,Y. and Yamasato,K. JOURNAL Unpublished (1993) STANDARD No information REFERENCE 3 (bases 1 to 1286) AUTHORS Nakagawa,Y. TITLE Direct Submission JOURNAL Submitted (05-JAN-1993) to the DDBJ/EMBL/GenBank databases. Yasuyoshi Nakagawa, The University of Tokyo, Institute of Applied Microbiology; 1-1 Yayoi, 1-chome, Bunkyo-ku, Tokyo 113, Japan (Tel: 03-3812-2111, Fax:03-5684-8342) STANDARD No information COMMENTS Organism information Culture collection: JCM 7458 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14019 BASE COUNT 352 a 247 c 348 g 318 t 3111 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ (---U----- ---------- ---------- 241 --------UG -)CU-UUn-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --cuag---- -----ag--- accu-nCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUAUGc A-A--CCU-N C-CUUU---U -A-CA-G-GG 421 -GAA-UA-GC C--------- ------cg-g a(-gaaau)u cggau-u--a auncucc-au 481 gg-uuu---- ---------- ---------- ---------- ---aua-(-- --------ug 541 aa-------- -)-ugg---- ---------- ----caun-- ---guuunu- au--aa---- 601 --(------- ---uaaa--- ---)------ -----ga--| -uuuau--c- g--gua---- 661 ----aaag-- aug---g-|g caugc----- -gu|----au c--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAC-GG) -C-AUACC-A A|-GGC-UN- CGA------- -----UG-AU 781 U-AG-G-GG| -U-CCU--(G -AGA)-GGGA ----GA-U-- CCC-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-GUCAAU-- GG-AG-(GCA A)-CUC-UGA ACCA|-GCCA UGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G UC(--cuaug --)GA-UUGU AAA--CUNC| UUU--UG-UU 1021 ---C-G-G-- GA-A-GA-AA --UGU-AAU( U----ACGUG U----A---) AUUA------ 1081 ---------- -------U-U U-GA-CGGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCANC NNCGGNN-A) U-A-C-GGAG |-GAUC-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGU|U UAAA-GGGU- UCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U CAG---UGGU G-AAA-UC-U UA-UAG-C(- UU-A)A-CUA -UA-A-AAU- 1321 -UGCC-GUUG A-UAC-UGCU U-GACUU-GA AUA-----GU A-UG-GAAGU AAU-U|AGAA 1381 UA-UGUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-ACAUGG- AAUA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -AUUACUA-- ---------- ---------- ---------C 1501 GUA--CU-UA UUGACG-CUG AU-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -CU-NU-UCG -GU-UU---- ---------- 1681 -(U---CG)- ---------- ---------- ---------- -------GA- -CUGAG-UGG 1741 CU--AA---- --GC-(GAA- ---A)G-UG- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAGGA 1921 A-CCUUA-CC AAG-GC-UUA A-A-UG|--- ---------U ---AGAU--- -UG----NCA 1981 -GGU-U--(- UAGA-)-GAU -A-GACN--- NN-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AC---| AAU-UU-ACA |----|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-C 2221 AG-G-(UUAA -GU)-CCUAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-AAC-AA-G A-CU-G-CCG --GU(-GC-A AA)-CCG-U- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AACC-AU CAC-G-GC-C CUUAC-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAA AGC-A-G-C- UA-CCA-G(G 2881 -CAA)CUGG- ---------- AU-UCGAA-U CUCA--AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AUA-(UC -AG--CC)-A UGAUCCGGUG AAUAC-G~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.lutescen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium "lutescens". ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium "lutescens". ORGANISM Flavobacterium "lutescens". REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59156 ATCC 27951 = IAM 12575 BASE COUNT 371 a 323 c 460 g 307 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCNG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-NNA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UCCN A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCNG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--NUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-GC -NU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GNG AUU-CA-UG- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutze6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Stanier 222 ATCC 17589. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Stanier 222 ATCC 17589. ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17589 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25432|g1142679 isolate_name= Stanier 222 BASE COUNT 369 a 327 c 459 g 301 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.stutzer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas stutzeri str. Stanier 221 CCUG 11256 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas stutzeri str. Stanier 221 CCUG 11256 (T). ORGANISM Pseudomonas stutzeri. REFERENCE 1 AUTHORS Bennasar,A., Rossello-Mora,R., Lalucat,J. and Moore,E.R.B. TITLE sp. nov. 16S rRNA gene sequence analysis relative to genomovars of Pseudomonas stutzeri and proposal of Pseudomonas balearica JOURNAL Int. J. Syst. Bacteriol. 46, 200-205 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26262|g1142687 CCUG 11256 (T) = ATCC 17588 (T) isolate_name= Stanier 221 BASE COUNT 369 a 327 c 459 g 301 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.fragi1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas fragi. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas fragi. ORGANISM Pseudomonas fragi. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84014|g1246383 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 385 a 342 c 479 g 321 t 2849 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG A--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-UU-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGU G-AGCUA-GA GUA-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 GCU--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---UG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C GA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-AUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Azo.vinlnd 4376 bp RNA RNA 02-JUL-1998 DEFINITION Azotobacter vinelandii str. AMOP. ACCESSION No information KEYWORDS No information. SOURCE Azotobacter vinelandii str. AMOP. ORGANISM Azotobacter vinelandii. REFERENCE 1 AUTHORS Greene,S.R. TITLE Phylogenetic analysis of azotobacter vinelandii JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40329|g790695 isolate_name= AMOP BASE COUNT 246 a 235 c 316 g 198 t 3381 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... ......GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 G-GC-AAG|U UGG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -CGCA-UCCA A-AAC-UACU G-GGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GC-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAG -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CUU 1981 -UCA-A--(- GAGA-)-UUG -A-UGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----A----| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCUAA-U CCCAG-AAAA -CU-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.spB13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. B13. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. B13. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Zhou,J.-Z. and Tiedje,J.M. TITLE Gene transfer from a bacterium injected into an aquifer to indigenous bacterium JOURNAL Mol. Ecol. 4, 613-618 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40412|g703250 geog_source= Germany biol_source= sewage isolate_name= B13 BASE COUNT 143 a 116 c 181 g 119 t 3817 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|A UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA U-AAC-UGCC U-GACUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUA. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.nitrred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas nitroreducens. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas nitroreducens. ORGANISM Pseudomonas nitroreducens. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84021|g1246386 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 350 a 297 c 431 g 283 t 3015 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AANA GGA--NGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|A UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA U-AAC-UGCC U-GACUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-UC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CNNN U------A|G -CC-GU-UGG -AA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -UUUAG-UGN 1741 NN--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----CCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-N AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.CRE12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. CRE 12. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. CRE 12. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37339|g1051191 isolate_name= CRE 12 BASE COUNT 367 a 333 c 468 g 301 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-GA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|A UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA U-AAC-UGCC U-GACUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CCGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCG-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.aerugi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas aeruginosa. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas aeruginosa. ORGANISM Pseudomonas aeruginosa. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11285 (bases 1 to 192) IAM 1514 = ATCC 10145 = NCTC 10332 = ICPB 2523 = DSM 50071 = NRRL B-771 = NCPPB 965 = NCDO 1369 = NCIMB 8295 (T) BASE COUNT 166 a 137 c 190 g 125 t 3758 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AUUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UKA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-W A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUH-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CAGG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUN-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- YA-AGC-C(G 2881 -CGA)GGUG- ---------- GH-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.aerugi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas aeruginosa. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas aeruginosa. ORGANISM Pseudomonas aeruginosa. REFERENCE 1 AUTHORS Toschka,H.Y., Hoeptl,P., Ludwig,W., Schleifer,K.H., Ulbrich ,N. and Erdmann,V.A. TITLE Complete nucleotide sequence of a 16S ribosomal RNA gene from Pseudomonas aeruginosa JOURNAL Nucleic Acids Res. 16, 2348-2348 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X06684 DSM 50071 = ATCC 10145 = NCTC 10332 = ICPB 2523 = NRRL B-771 = NCPPB 965 = NCDO 1369 = NCIMB 8295 (T) = IAM 1514 BASE COUNT 392 a 351 c 480 g 314 t 2839 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~GAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-AGCAG GGGC-CUUCA ACAC-AUGCA A-GUC-GAGC 121 U--UA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)C--CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGCC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GUCGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U --GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAA-GU -G|-GU-UC- 1261 A-GC-AAG|C UUG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAGCUACU G-AGCUA-GA GUA-----CG G-UA-GA-GG UGG-U|AGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--G--UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CACC--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GUGG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.CRE11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas sp. str. CRE 11. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas sp. str. CRE 11. ORGANISM Pseudomonas sp. REFERENCE 1 AUTHORS Mueller,J.G., Devereux,R., Santavy,D.L., Lantz,S.E., Willis,S .G. and Pritchard,P.H. TITLE Phylogenetic and physiological comparisons of PAH-degrading bacteria from geographically diverse soils JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37338|g1051190 isolate_name= CRE 11 BASE COUNT 371 a 329 c 466 g 300 t 2910 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GY-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GYAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AGG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GC-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UACU G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G G-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CACC--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.aerugin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas aeruginosa str. NIH 18 ATCC 25330. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas aeruginosa str. NIH 18 ATCC 25330. ORGANISM Pseudomonas aeruginosa. REFERENCE 1 AUTHORS Adkins,J.P., Madigan,M.T., Mandelco,L., Woese,C.R. and Tanner,R.S. TITLE Arhodomonas aquaeolei gen. nov., sp. nov., an aerobic, halophilic bacterium isolated from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 43, 514-520 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25330 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34133 isolate_name= NIH 18 BASE COUNT 379 a 334 c 470 g 301 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGA---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---CUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCNG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-NGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GC-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCN A-AAC-UACU G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CACC--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -NA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG. .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.aerugi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas aeruginosa.. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas aeruginosa. ORGANISM Pseudomonas aeruginosa. REFERENCE 1 AUTHORS Merritt,P.M., Goss,S.J. and Gunderson,J.H. TITLE The small-subunit rRNA sequence of Pseudomonas aeruginosa str. NIH 18 JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U38445|g1054913 BASE COUNT 379 a 337 c 474 g 302 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUGG---U -AGUG-G-GG 421 -GAU-AA-CG U--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UG 541 AG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UCAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --AGU-AAG( U----UAAUA -----C---) CUUG-CU-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UC- 1261 A-GC-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UACU G-AGCUA-GA GUA-----CG G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- ---S-(UAA- ---C)G-CG- AUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CACC--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-AUC- GUAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.oleovor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas oleovorans. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas oleovorans. ORGANISM Pseudomonas oleovorans. REFERENCE 1 AUTHORS Anzai,Y., Kudo,Y. and Oyaizu,H. TITLE The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera JOURNAL Int. J. Syst. Bacteriol. in press (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D84018|g1246385 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 388 a 348 c 474 g 315 t 2851 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --CGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--UCU-G C-CUAG---U -AGUG-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GAAC-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAG----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--AUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCAC| UUUA-AG-UU 1021 --GG-GAG-- GA-A-GG-GC --UCA-UAG( C----GAAUA -----C---) CUGU-GA-GU 1081 ---------- -------U-U U-GA-CGUU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UG- 1261 N-AU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGUC U-GGCUA-GA GUG-----CG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GA-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAU -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-C CCCAU-AAAA -CC-G-AUC- GUAGACCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AC)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGG--U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.B 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.11 COLWELLIA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.11 COLWELLIA_ASSEMBLAGE. ORGANISM 2.14.3.11 COLWELLIA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR92 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Britschgi,T.B. and Giovannoni,S.J. TITLE Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing JOURNAL Appl. Environ. Microbiol. 57, 1707-1713 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63811 Former RDP Sids: env.clon92 library_source= Sargasso Sea bacterioplankton DNA NB: IDENT:P.aerugin/Oceanospirillum area BASE COUNT 350 a 297 c 412 g 288 t 3029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--N ANAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GUGU---AAU -GU-UC-GG- A-A--UCU-G --CCCA---G -UGAG-U-GG 421 -GAU-AA-CU A--------- ------GU-- G(-GAAA-)C -GCAG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-G-A---- ---------- ----GAA--- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCCAA----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GG-A-GG-AA --AUG-CUG( U----UAAUA -----A---) CCAA-CA-GN 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGUG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-AU-AAG|C UAG---AUGU G-AAA-GC-C CC-GGG-N(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-ACU-GUCA A-GCUUG-AG UCU-----CG --UA-GAGGG UGG-C|GGAA 1381 UU-CC-UGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -GA-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCU -CUUAG-UGG 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UAAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACCGAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UG|--- ---------G ---AAAG-U- ACC----GGU 1981 -UAC-A--(- GAAU-)-GGU -A-ACCU--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG G-)------- CU-------- ----GG---| CUU-UC-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGC-GA-A A-CU-G-CCG --GU(-GA-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAC-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AC -UA--CAACA GGA-A-G-C- AA-GAU-U(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCUU--AAAA -GA-U-ACC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-UAC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-GU)-G CCA-CGGUG- AAUNC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ps.nautica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudomonas nautica. ACCESSION No information KEYWORDS No information. SOURCE Pseudomonas nautica. ORGANISM Pseudomonas nautica. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11287 (bases 1 to 180) BASE COUNT 143 a 125 c 158 g 103 t 3847 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 GGG-AAUAUU G-GABADU-- GG-GG-(GCA A)-CCC-UNA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--U--CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-AAAC-CU --UAU-GGC( -----UAAUA -----C---) CCAU-GA-GG 1081 ---------- -------C-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUK-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------UG- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----KGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G --C-GU-UGG -GA-CU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------AGU -CUUAG-UGG 1741 CG--CM---- -----(KAA- ---C)G-CA- CUAA-GUUGA C|N|N-CCN- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... ......C-AU YAU-G-GC-C CUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCUU-AAAA -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrb.hyclas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinobacter hydrocarbonoclasticus str. SP.17 ATCC 49840. ACCESSION No information KEYWORDS No information. SOURCE Marinobacter hydrocarbonoclasticus str. SP.17 ATCC 49840. ORGANISM Marinobacter hydrocarbonoclasticus. REFERENCE 1 AUTHORS Gauthier,M.J., Lafay,B., Christen,R., Fernandez,L., Acquaviva,M., Bonin,P. and Bertrand,J.C. TITLE Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium JOURNAL Int. J. Syst. Bacteriol. 42, 568-576 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49840 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67022 isolate_name= SP.17 BASE COUNT 359 a 339 c 468 g 295 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGN---AAU -GC-UUAGG- A-A--UCU-G C-CCAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GN-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAAUC-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-AAAC-CU --UAU-GGC( -----UAAUA -----C---) CCAU-GA-GG 1081 ---------- -------C-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAC- 1321 -GGCA-UUUC G-AAC-UGUC A-GACUU-GA GUG-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--NA-CU-- -------N|G -CC-GU-UGG -GA-CU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------AGU -CUUAG-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- CUNA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CNA)---G-G UN-AAAACUC -CAA-UGAUN UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(A-GCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCU- 2281 GG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-N-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCUU-AAAA -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCNAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -NGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- UU-GC-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA--C---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-AU-UA-CA N-CGGU-GUG GUN-NA-NG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flc.spS36 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flectobacillus sp. str. clone S38-W{gv}1. ACCESSION No information KEYWORDS No information. SOURCE Flectobacillus sp. str. clone S38-W{gv}1. ORGANISM Flectobacillus sp. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14584|g975737 isolate_name= clone S38-W{gv}1 BASE COUNT 365 a 346 c 471 g 288 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUSCA A-GUC-GGGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCS|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UCU-U C-CUAG---U -AGUG-G-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -UCGG-A--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--UCCACU 601 -C(------- ---UUCG--- ---)------ GAGAGGA--| -CCUUG--C- G--CUA---- 661 ----UUAG-- AUG---A-|G CCUAA----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAK-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AGGC-CU --UAA-CGC( -----UAACA -----C---) CGUU-GA-GG 1081 ---------- -------A-U U-GA-CGUC- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-CUUC G-AAC-UGCA U-GGCUA-GA GUG-----UG G-UA-GAGGG UAG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-CA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGG -GG-AU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------AUC -CUUAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---AGAG--- -AA----CGU 1981 -CCC-A--(- GAGA-)-UGG -G-AUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -CA--CAGAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAC-AAAA -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGA- UU-GC-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-AU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1023 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1023. str. SBR1023. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1023. str. SBR1023. ORGANISM str. SBR1023. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84467|g871588 isolate_name= SBR1023 BASE COUNT 97 a 93 c 137 g 65 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-UU--A ACNC-AUGCA A-GUC-GAGC 121 G--GC-AG-C G--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CGG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- -CG|-GC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-UUCGG- A-A--UCU-G C-CCUU---C -AGUG-G-GG 421 -AAU-AA-CC A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AAC-(-- --------UG 541 AG-------- -)-GUU---- ---------- ----GAAA-- ---GCAGGG- GA--UC---- 601 --(------- ---GCAA--- ---)------ -----GA--| -CCUUG--C- G--CUG---- 661 ----AUGG-- AUG---A-|G CCGAA----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GNA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.NIX 4376 bp RNA RNA 02-JUL-1998 DEFINITION inclusion X. ACCESSION No information KEYWORDS No information. SOURCE inclusion X. ORGANISM inclusion X. REFERENCE 1 AUTHORS Kerk,D., Gee,A., Dewhirst,F.E., Drum,A.S. and Elston,R.A. TITLE Phylogenetic placement of nuclear inclusion X (NIX) into the gamma subdivision of proteobacteria on the basis of 16S ribosomal RNA sequence comparisons JOURNAL Syst. Appl. Microbiol. 15, 191-196 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94382 (bases 1 to 286) NB: IDENT:general Cardiobacterium area BASE COUNT 183 a 153 c 213 g 135 t 3692 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 ..AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AN-CG 1021 --AG-GAG-- GA-A-AG-GG --GYU-CUG( C----UAAUA -----U---) CAGA--C-UC 1081 ---------- -------U-G U-GA-CGA.. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... ...A-GAGGA GUG-U|GGAA 1381 UU-UCCUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-GGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CACUCUG-- ---------- ---------- ---------G 1501 UCU--GA-CA CUGACG-CUG AG-G------ -------UA- C-GHAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -UU-GU-CGN -GU-UC---- ---------- 1681 -(CUU-GC)- ---------- ---------- ---------- -------GAA -CUUGN-UAA 1741 CG--CA---- --GC-(-AA- ---C)G-CG- AUAA-G.... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. ..U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-G |-UC--CUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N--N-- CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-CG -UA--CAAAC GGU-C-G-C- GA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CUGAG-AAAA -CG-C-UUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-N- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA.(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.7911 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 7911.. ACCESSION No information KEYWORDS No information. SOURCE clone 7911. ORGANISM clone 7911. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89341 BASE COUNT 54 a 39 c 64 g 46 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ ..A------- -----UC-UA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GCAU ----GA-U-- CAG-C|A-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GUG-- GA-------- ---------( ---AGGAUUU AG-------) ---------- 1081 ---------- ---------- C-GU-UAAU- A-GCG-U-NA A-AU--UUGA CGUU...... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR125 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35466 BASE COUNT 71 a 70 c 91 g 52 t 4092 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .C-U-ACC-A C|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UU 1021 --GG-GAG-- GA-A-AG-GC --UCA-CGG( U----UAAUA -----A---) CCGU-GA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUU.. .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.agg53 4376 bp RNA RNA 02-JUL-1998 DEFINITION marine snow. ACCESSION No information KEYWORDS No information. SOURCE marine snow. ORGANISM marine snow. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10950 library_source= marine snow associated BASE COUNT 374 a 309 c 449 g 295 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUCA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CUUA---U -GGUG-G-GG 421 -NAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CCA---- 661 ----UUUG-- AUU---A-|G CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-AG-GG --UAU-UGG( U----UAAUA -----G---) CCAC-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-ACA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUA-----CU G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCG 1981 -ACU-A--(- GAGA-)-UAG -A-CGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C NG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG GGC-A-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- AU-GC-AAAA -GAA-G-UGG 3121 C-UAG-U-UU -AA--C---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-G....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clw.peryth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Colwellia psychroerythrus.. ACCESSION No information KEYWORDS No information. SOURCE Colwellia psychroerythrus. ORGANISM Colwellia psychroerythrus. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10939 BASE COUNT 319 a 267 c 386 g 267 t 3137 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ---CUAAA-- ---GGGGGG- GA--UU---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CCA---- 661 ----UUUG-- AUU---A-|G CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-GN- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AY -ACUGG-G-A 841 (CUGA-GA-C HCG)--GCHH -NNN-C-UCU -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCN-GN-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-AAGG-GA --UGU-AGU( -----UAAUA -----A---) CUGC-AU-GC 1081 ---------- -------U-G U-GA-CGUU- A-ACA-A-NA G-AA--GAAG ---------C 1141 -ACCGGCU-M ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-M-C-GAGG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UMAA-GCGU- UCG-UAG-GC -N|-GU-CU- 1261 A-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-N)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG U-AAC-UGGU A-GACUA-GA UGU-----AC U-GA-GAGGG UGG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------AA- C-NNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GN-UCG -UG-UN---- ---------- 1681 -(NUU-GA)- ---------- ---------- ---------- -------NAC -GUGAG-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- CUAA-GUUGA C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAANCUC -AAA-UGAAU UG-HCGGG-G -G-C-CN--G 1861 C-A--CW-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AU-NAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----KYK 1981 -ACU-A--(- GAGA-)-UAG -W-YNHG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CHG---- ---------- ---------- ----(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-- -UUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG GGC-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAG -CU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCN -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -NGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 NCACCGCCC- GUC-NCN--- --CCN-UGGG A--GU-GGG- AU-GC-NAAA -GAN-G-UGG 3121 C-UAG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S51-W 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Colwellia-like str. Colwellia-like bacterium clone S51-W1. ACCESSION No information KEYWORDS No information. SOURCE str. Colwellia-like str. Colwellia-like bacterium clone S51-W1. ORGANISM str. Colwellia-like. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14581|g975734 isolate_name= Colwellia-like bacterium clone S51-W1 BASE COUNT 379 a 319 c 454 g 312 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CUUA---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGAGGG- GA--CUU--- 601 --(------- ---UUCG--- ---)------ ----GAG--| -CCUUU--C- G--CCA---- 661 ----UUUG-- AUU---A-|G CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU U-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU GAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-AG-GG --AUG-UAG( U----UAAUA -----A---) CUGC-AU-UC 1081 ---------- -------U-G U-GA-CGUU- A-ACA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCASC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- UCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU G-AAC-UGGG U-AACUA-GA GUA-----CU G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UCG -UG-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCC -GUGAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- CUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAG 1981 -ACY-A--(- GAGA-)-UGG -A-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUS-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG GGC-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAG -CU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- AU-GC-AAAA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GU-CA-CC A-CUUU-GUG UUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB54 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15115|g710321 library_source= Pele's Vents Bacterium DNA BASE COUNT 388 a 315 c 453 g 318 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--- ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CAUA---G -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U UU-U------ A--CCU-(-- --------UU 541 AG-C------ -)-GGGU--- ---AG----A AC--CAAA-- ---GGAGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUU--C- G--CUU---- 661 ----UUUG-- AUU---A-|G CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GC-GAG-- GA-G-AG-GU --UGG-UAG( U----UAAUA -----A---) CUGC-UA-AC 1081 ---------- -------U-A U-GA-CGUU- A-ACA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUU G-AAC-UGGC A-GACUA-GA GUA-----UU G-UA-GAGGG UGG-U|GGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGAAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--AC-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CU-GU-UUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGAG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAG 1981 -ACU-A--(- GAGA-)-UAG -A-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AGCCC-CU-A |-CC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG UGC-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CACAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGG 3121 C-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-GU-CA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s3. str. s3. ACCESSION No information KEYWORDS No information. SOURCE str. s3. str. s3. ORGANISM str. s3. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69307|g1181117 isolate_name= s3 BASE COUNT 96 a 65 c 109 g 75 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AGCUA-GA GUU-----UU G-AA-GAGGG UGG-U|AGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 UCA--AA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GU-UCG -UG-UC---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------GAU -GUGAG-UAA 1741 CG--CA---- --S--(UAA- ---C)G-CA- CUAA-GUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K18 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K18.. ACCESSION No information KEYWORDS No information. SOURCE clone K18. ORGANISM clone K18. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91533|g987808 BASE COUNT 95 a 65 c 109 g 74 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AGCUA-GA GUU-----UU G-AA-GAGGG UGG-U|AGAA 1381 UU-UCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 UCA--AA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------A|G -UU-GU-UCG -UG-UC---- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------GAU -GUGAG-UAA 1741 CG--C----- ---M-(KAA- ---C)G-CA- CUAA-GUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Altm.mleo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alteromonas macleodii. ACCESSION No information KEYWORDS No information. SOURCE Alteromonas macleodii. ORGANISM Alteromonas macleodii. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82145|g1050885 IAM 12920 (T) = ATCC 27126 BASE COUNT 369 a 316 c 436 g 299 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ANNNN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------N- NUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CUU-G C-CUUU---G -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---CGGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| --CUCC--G- G--CGC---- 661 ----AAAG-- AGA---G-|G CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-AA-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------C-G U-GA-CGUU- A-ACA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AUG- 1321 -GUCA-UUUA G-AAC-UGGC A-GACUA-GA GUC-----UU G-GA-GAGGG GAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCCCUG-- ---------- ---------- ---------G 1501 CCA--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-CUGU C--UA-CU-- -------A|G -CU-GU-GUG -UU-GN---- -C-------- 1681 -(UUU-AA)- ---------- ---------- ---------- -------NNC -GUGCG-UAG 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----NUU 1981 -ACU-A--(- GAGA-)-UAG -N-UUNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CCU---- ---------- ---------- ---U(---AA ---GUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UU -UA--CAGAG GGA-A-G-C- GA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCGGA-C CCCUU-AAAG -AA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- AU-GC-AAAA -GAA-G-UAG 3121 U-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-AU-UA-CC A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Altm.mleod 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alteromonas macleodii.. ACCESSION No information KEYWORDS No information. SOURCE Alteromonas macleodii. ORGANISM Alteromonas macleodii. REFERENCE 1 AUTHORS Delong,E.F., Franks,D.G. and Alldredge,A.L. TITLE Diversity of aggregate-attached versus free-living marine bacterial assemblages JOURNAL Limnol. Oceanog. 38, 924-934 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10938 BASE COUNT 317 a 265 c 382 g 256 t 3156 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .UG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CUU-G C-CUUU---G -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---CGGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| --CUCC--G- G--CGC---- 661 ----AAAGAG AGG---N-|N CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAA ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-AA-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------C-G U-GA-CGUU- A-ACA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AUG- 1321 -GUCA-UUUA G-AAC-UGGC A-GACUA-GA GUC-----UU G-GA-GAGGG GAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCCCUG-- ---------- ---------- ---------G 1501 CCA--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-CUGU C--UA-CU-- -------A|G -CU-GU-GUG -UN-UC---- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- -------NAC -GUNCG-UAG 1741 CG--AA---- --SS-(UAA- ---C)G-CG- CUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CS--- 1861 --A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UG|--- ---------C ---WGAG--- -AA----SUU 1981 -WCU-A--(- GAGA-)-UAG -WUUCGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CCU---- ---------- ---------- ---U(---AA ---GUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UU -UA--CAGAG GGA-A-G-C- GA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCGGA-C CCCUU-AAAG -AA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -G........ .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligE32 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. E-32. str. E-32. ACCESSION No information KEYWORDS No information. SOURCE str. E-32. str. E-32. ORGANISM str. E-32. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58342|g1718218 biol_source= lignin enrichment culture isolate_name= E-32 BASE COUNT 74 a 69 c 91 g 76 t 4066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... A-U-GU-GGU -UU-AUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----GUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---U(---UG ---GUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GU-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UU -UA--CAGAG GGA-A-G-C- G.......(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.C 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.12 PSEUDOALTEROMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.12 PSEUDOALTEROMONAS_GROUP. ORGANISM 2.14.3.12 PSEUDOALTEROMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.C.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.12.1 V.MARINUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.12.1 V.MARINUS_SUBGROUP. ORGANISM 2.14.3.12.1 V.MARINUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.WHB462 4376 bp RNA RNA 02-JUL-1998 DEFINITION barophile WHB. ACCESSION No information KEYWORDS No information. SOURCE barophile WHB. ORGANISM barophile WHB. REFERENCE 1 AUTHORS Liesack,W., Weyland,H. and Stackebrandt,E. TITLE Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria JOURNAL Microb. Ecol. 21, 191-198 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54745|g40360 library_source= barophile WHB 46 BASE COUNT 388 a 313 c 452 g 328 t 2895 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGC---UAA -GU-CUGGG- G-A--CAU-G C-CUUU---A -CGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACU---- ---------- ---------- ---------- ---ACC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUA--C- G--CGU---- 661 ----AGAG-- AGU---G-|A CCUAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUGC-AG-UG 1021 --AG-GAG-- GA-AAGG-UG --UUG-UGU( -----UAAUA -----G---) ACAA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GU -G|-GU-UA- 1261 A-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGU U-AACUA-GA UUU-----UC G-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACA-CUG AG-G------ -------CA- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGU C--UA-UU-- -------U|A -GA-GA-UUG -GU-GA---- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- -------UCA -CUGGG-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-AUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCG 1981 -CCU-CA-(- GAGA-)-UAG -A-UGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AC--UUGC-C AG-CGC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG GGU-U-G-C- UA-AGC-A(G 2881 -CGA)UGUU- ---------- UU-GUAGU-C CUCCU-AAAG -CC-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCA -GGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-C G-AU-GA-CC A-CGGU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.WHB461 4376 bp RNA RNA 02-JUL-1998 DEFINITION barophile WHB. ACCESSION No information KEYWORDS No information. SOURCE barophile WHB. ORGANISM barophile WHB. REFERENCE 1 AUTHORS Liesack,W., Weyland,H. and Stackebrandt,E. TITLE Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria JOURNAL Microb. Ecol. 21, 191-198 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54744|g40359 library_source= barophile WHB 46 BASE COUNT 382 a 328 c 460 g 311 t 2895 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGC---AAA -GU-CUGGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUGC-AG-CG 1021 --AG-GAG-- GA-AAGU-UG --UAG-UGU( -----UAAUA -----A---) ACUA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-GAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUU-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|C -GA-GA-UUG -GU-AA---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------UUA -CUGGG-UUC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-CA-(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GUAGU-C CUCCU-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCA -GGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-C G-UU-UA-CC A-CGGU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDSS12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DSS12. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DSS12. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Sato,T. and Horikoshi,K. TITLE Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21225|g825516 isolate_name= DSS12 BASE COUNT 388 a 339 c 469 g 315 t 2865 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --AGG-UAG( U----UAAUA -----A---) CUGC-UU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UC- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-AU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-UUC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|AG C-U---CG-U |GU-U(UGUG A)-AAUGU-U 2221 GG-G-(UUAA AGU)-CCCGC AA-------C CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-CGC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.haneda 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella hanedai. ACCESSION No information KEYWORDS No information. SOURCE Shewanella hanedai. ORGANISM Shewanella hanedai. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82132|g1050933 (bases 29 to 1442) CIP 103207 (T) = ATCC 33224 BASE COUNT 357 a 314 c 444 g 297 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAARGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------CGG- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGA- U-A--UCU-G C-CUAG---U -CGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUAG-- AUG---A-|G UCUAG----- -GU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --AGG-UAG( U----UAAUA -----A---) CUGC-UU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACNUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUG G-AAC-UGAC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-AA---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------UUA -CUGGG-CUC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB172R 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB172R. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB172R. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Masui,N. and Koki,H. TITLE Properties of obiligatery barophilic bacteria isolated from a sample of deep-sea sediment at Izu-Bonin Trench JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63824|g949832 isolate_name= DB172R BASE COUNT 388 a 333 c 469 g 316 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GACA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AGU( U----UAAUA -----A---) ACUA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGGA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-AU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-UUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-CC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB172F 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB172F. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB172F. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Masui,N. and Horikoshi,K. TITLE Properties of obiligatery barophilic bacteria isolated from a sample of deep-sea sediment at Izu-Bonin Trench JOURNAL J. Mar. Biotechnol. 4, 96-99 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63488|g940430 isolate_name= DB172F BASE COUNT 385 a 333 c 472 g 316 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AGU( U----UAAUA -----A---) ACUA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGGA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-AU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-UUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGGAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.benthi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella benthica. ACCESSION No information KEYWORDS No information. SOURCE Shewanella benthica. ORGANISM Shewanella benthica. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82131|g1050931 BASE COUNT 367 a 322 c 446 g 295 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AGU( U----UAAUA -----A---) ACUG-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUNN G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -NA-NU-UUG -GU-GU---- ---------- 1681 -(CUU-NN)- ---------- ---------- ---------- -------NCA -CUGGG-UUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- --UCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB6906 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB6906. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB6906. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Sato,T. and Horikoshi,K. TITLE Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21223|g825514 isolate_name= DB6906 BASE COUNT 388 a 338 c 461 g 319 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AGU( U----UAAUA -----A---) ACUA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGGA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-AU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-UUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUC 1981 -ACU-A--(- GAGA-)-UAG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UCCA UG|U-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---A(---UG ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-U-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C UUA--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-CUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCCCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB5101 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB5101. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB5101. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Hata,S., Suzuki,S., Smorawinska,M. and Horikoshi,K . TITLE The isolation and properties of deep-sea bacteria at high hydrostatic pressure JOURNAL Unpublished (1983) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21229|g415614 isolate_name= DB5101 BASE COUNT 388 a 338 c 462 g 321 t 2867 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCC-G C-CUAG---U -CGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CGA---- 661 ----CUAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAUC- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UAA-GCA( U----UAAUA -----C---) UGCU-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUU G-AGC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -U-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-UC-UCCA UG|U-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB6101 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB6101. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB6101. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Sato,T. and Horikoshi,K. TITLE Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21221|g825512 isolate_name= DB6101 BASE COUNT 386 a 335 c 465 g 318 t 2872 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A---CU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GCG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-UU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AGU( U----UAAUA -----A---) ACUA-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------U 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GCC 1981 -AGC-A--(- GAGA-)-UGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UCCA UG|U-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUC- ---------- UA-GCUAA-U CCCAC-AAAG -CC-G-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDB6705 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DB6705. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DB6705. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Hata,S., Suzuki,S., Smorawinska,M. and Horikoshi,K . TITLE The isolation and properties of Deep-sea bacteria at high hydrostatic pressure JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21222 isolate_name= DB6705 BASE COUNT 392 a 340 c 459 g 316 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--ACU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---U-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GUGG 901 CGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AC-GAG-- GA-A-AG-GU --AGG-UAG( U----UAAUA -----A---) CUGC-UU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCG-CU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- U-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCU 1981 -GGU-A--(- GAGA-)-UAC -C-UCAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--A 2161 GU-GC-UCCA UG|U-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGCCC AG-CACC--- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CAA)UGGU- ---------- AA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-GA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.marinus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio marinus str. MP-1 ATCC 15381 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio marinus str. MP-1 ATCC 15381 (T). ORGANISM Vibrio marinus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11306 ATCC 15381 (T) = NCTC 1144 = NCIMB 1144 (T) isolate_name= MP-1 BASE COUNT 165 a 134 c 181 g 123 t 3773 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ...UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUKG-A-A 841 (UUGA-GA-C ACG)--GUCC -WGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UKA UGCA|-GCCA UACC-GY-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --GGU-ADG( U----UAAUA -----C---) UUUA-CC-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCWG- 1441 -U-G-GC(-G AA-G)GCGG- -CYACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUY AG-A------ -------UG- C-GWAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UD-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUV 1741 UU--AA---- --CG-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ......GG-A CG-ACG--UC -A-AGUC-AU CAU-G-GY-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CGA)UGGU- ---------- NA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.marinus4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio marinus str. MP-1 ATCC 15381 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio marinus str. MP-1 ATCC 15381 (T). ORGANISM Vibrio marinus. REFERENCE 1 AUTHORS DeLong,E. and Franks,D.G. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15381 (T) ATCC 15381 (T) = NCTC 1144 = NCIMB 1144 (T) isolate_name= MP-1 NB: Same strain as sequenced by Woese lab. Matches Woese sequence, but not `V.marinus3` in the RDP. BASE COUNT 333 a 269 c 370 g 261 t 3143 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 ..AC-AA-CA G--------- ------UN-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CGA---- 661 ----CUAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-AU-G-A A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --GGU-AAA( U----UAAUA -----C---) UUUA-CAGAC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUU-----CU U-GA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUN 1741 UU--AA---- --CG-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CGA)UGGU- ---------- AA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UNN-NGGUG- AAUAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrt.marinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio marinus str. MP-1 NCIMB 1144 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio marinus str. MP-1 NCIMB 1144 (T). ORGANISM Vibrio marinus. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82142|g1050935 NCIMB 1144 (T) = NCTC 1144 = ATCC 15381 (T) isolate_name= MP-1 BASE COUNT 381 a 323 c 442 g 306 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G C-CUAG---U -CGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CGA---- 661 ----CUAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --GGU-AAA( U----UAAUA -----C---) UUUA-CC-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUU-----CU U-GA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CGA)UGGU- ---------- AA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-GA-C- A-CGGU-GUG GUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDSK1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DSK1. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DSK1. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Hata,S., Suzuki,S., Smorawinska,M. and Horikoshi,K. TITLE The isolation and properties of Deep-sea bacteria at high hydrostatic pressure JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21224 isolate_name= DSK1 BASE COUNT 394 a 344 c 453 g 318 t 2867 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G C-CUAG---U -CGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CGA---- 661 ----CUAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GCG-AAUAUU G-CACAAU-- GG-CG-(GAA A)-CCC-UGA UGCA|-GCCA UACC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --AGU-AGA( U----UAGUA -----C---) UCUG-CU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( ACA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUU-----CU U-GA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAU-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G UU-AAAGCUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GCC -CUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUU 1981 -UUU-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |--CC|A--G 2161 GU-GC-UCCA UG|--CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA AGU)-CCCCC AA-------- CGGA-G--CG CAACC-CU-U |AUC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-CG -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CAA)UGGU- ---------- AA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-GA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.marinus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio marinus str. MP-1 ATCC 15381 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio marinus str. MP-1 ATCC 15381 (T). ORGANISM Vibrio marinus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15381 (T) ATCC 15381 (T) = NCTC 1144 = NCIMB 1144 (T) isolate_name= MP-1 NB: although same ATCC as V.marinus3, not the same seq. BASE COUNT 384 a 324 c 449 g 309 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGU-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G C-CUAG---U -CGAG-G-GG 421 -GAC-AA-CA G--------- ------NN-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----GAAA-- ---GGGGGC- CNC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CGA---- 661 ----CUAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-CC 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-NNA UGCA|-GCCA UACC-GN-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --GGU-AAA( U----UAAUA -----C---) UUUA-CC-NC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GN-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUU-----CU U-GA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 CAA--GU-AA CUGACG-CUC AG-A------ -------UG- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -CUGGG-CUC 1741 UU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AU--UUGC-C AG-CNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG GGC-U-G-C- AA-ACC-A(G 2881 -CGA)UGGU- ---------- AA-GCGAA-U CCCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-AU-GA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.C.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.12.2 SHE.PUTREFACIENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.12.2 SHE.PUTREFACIENS_SUBGROUP. ORGANISM 2.14.3.12.2 SHE.PUTREFACIENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.algaFe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella alga str. FeRed. ACCESSION No information KEYWORDS No information. SOURCE Shewanella alga str. FeRed. ORGANISM Shewanella alga. REFERENCE 1 AUTHORS Rossello-Mora,R.A., Caccavo,F., Osterlehner,K., Springer,N., Spring,S., Schueler,D., Ludwig,W., Amann,R., Vannacanneyt,M. and Schleifer,K.H. TITLE Isolation and taxonomic characterization of a halotolerant, facultatively iron-reducing bacterium JOURNAL Syst. Appl. Microbiol. 17, 569-573 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81622|g683709 isolate_name= FeRed BASE COUNT 384 a 348 c 485 g 319 t 2840 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUCAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UUU-G C-CCAU---U -UGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUG---- 661 ----AUGG-- AUA---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGU-AAG( U----UAAUA -----C---) CUUA-CA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -CGCA-UUUC G-AAC-UGGC A-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UUC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AC--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-U- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-AG -UA--CAGAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC UGGGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s29 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s29. str. s29. ACCESSION No information KEYWORDS No information. SOURCE str. s29. str. s29. ORGANISM str. s29. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69333|g1181116 isolate_name= s29 BASE COUNT 91 a 71 c 111 g 70 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GNG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUC-----UU N-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --S--(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s10 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s10. str. s10. ACCESSION No information KEYWORDS No information. SOURCE str. s10. str. s10. ORGANISM str. s10. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69314|g1181096 isolate_name= s10 BASE COUNT 87 a 74 c 114 g 71 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC G-AAC-UGGC G-UACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- ---C-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.sp122 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella sp.. ACCESSION No information KEYWORDS No information. SOURCE Shewanella sp. ORGANISM Shewanella sp. REFERENCE 1 AUTHORS Bowman,J.P. and Nichols,D.N. TITLE Rich microbial diversity associated with Antarctic sea ice JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U39398|g1079698 BASE COUNT 370 a 327 c 453 g 308 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)UU-CCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GUGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUAGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--U UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UCCG--- ---)------ -----NUCU| -CCUUC--C- G--AGA---- 661 ----UUGG-- AUU---A-|A CCUAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A N|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -U-UCU--(N -AGA)-GGAU ----GU-C-- CAG-C|C-AC -ACUGG-U-C 841 (AUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G UAG-GC-AG- C-A---GC-G 901 GUG-AAUAUC G-CACAAU-- GG-CG-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GU --AAU-AGU( U----UAAUA -----A---) AAUA-UU-AC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C CAG---AUGU G-AAA-UC-C CC-GGU-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG G-AAC-UGGC G-AUCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G NGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GA---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------UCA -CUGGG-CUC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAUUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAG 1981 -ACC-A--(- GAGA-)-UGG -C-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGG-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CANAG GGN-C-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GA-GA-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCG-UA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.putref 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella putrefaciens str. B.W. Hammer 95 IAM 12079 (T). ACCESSION No information KEYWORDS No information. SOURCE Shewanella putrefaciens str. B.W. Hammer 95 IAM 12079 (T). ORGANISM Shewanella putrefaciens. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11288 (bases 1 to 191) Former RDP Sids: She.putrif IAM 12079 (T) = IFO 3908 = CCUG 13452 = NCIMB 10471 = ATCC 8071 biol_source= butter with surface taint isolate_name= B.W. Hammer 95 NB: former name Shewanella putrifaciens BASE COUNT 149 a 117 c 170 g 113 t 3827 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(.WCG)--G GAG-GC-AU- C-A---GU-G 901 GGG-AAUAUU G-BDCAAAU- -G-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--GCAC| UUUY-AG-UA 1021 --GG-GAG-- GA-A-AG-GG --UGU-AGY( U----UAAUA -----C---) GCUA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.G UGAAA)-UGC -GU-AGAG-A UC-UKGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCKG- -YYYYCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUBACG-CUC AU-G------ -------CA- C-KUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--W 1621 AAC-G-AUGU C--UW-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------AC -ACUGG-GCU 1741 CU--CA---- --AC-(KAA- ---C)G-CA- UUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UN -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.algaBr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella alga str. BrY. ACCESSION No information KEYWORDS No information. SOURCE Shewanella alga str. BrY. ORGANISM Shewanella alga. REFERENCE 1 AUTHORS Rossello-Mora,R.A., Caccavo,F., Osterlehner,K., Springer,N., Spring,S., Schueler,D., Ludwig,W., Amann,R., Vannacanneyt,M. and Schleifer,K.H. TITLE Isolation and taxonomic characterization of a halotolerant, facultatively iron-reducing bacterium JOURNAL Syst. Appl. Microbiol. 17, 569-573 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81621|g683708 isolate_name= BrY BASE COUNT 380 a 349 c 491 g 314 t 2842 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUC--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GG --UGU-AGC( U----UAAUA -----C---) GCUA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -AGCA-UUUC G-AAC-UGGC G-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC UGGGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.putre2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella putrefaciens. ACCESSION No information KEYWORDS No information. SOURCE Shewanella putrefaciens. ORGANISM Shewanella putrefaciens. REFERENCE 1 AUTHORS Rossello-Mora,R.A., Caccavo,F., Osterlehner,K., Springer,N., Spring,S., Schueler,D., Ludwig,W., Amann,R., Vannacanneyt,M. and Schleifer,K.H. TITLE Isolation and taxonomic characterization of a halotolerant, facultatively iron-reducing bacterium JOURNAL Syst. Appl. Microbiol. 17, 569-573 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81623|g683710 BASE COUNT 379 a 350 c 491 g 314 t 2842 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (-UUU----- ---------- ---------- 241 --------AC -)UU-CCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUC--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GG --UGU-AGC( U----UAAUA -----C---) GCUA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -AGCA-UUUC G-AAC-UGGC G-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC UGGGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s9 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s9. str. s9. ACCESSION No information KEYWORDS No information. SOURCE str. s9. str. s9. ORGANISM str. s9. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69313|g1181125 isolate_name= s9 BASE COUNT 90 a 71 c 111 g 71 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GNG-CAG-GC -N|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -AGCA-UUUC G-AAC-UGGC G-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --S--(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Aspo5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Aspo5.. ACCESSION No information KEYWORDS No information. SOURCE clone Aspo5. ORGANISM clone Aspo5. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95233|g1166409 BASE COUNT 374 a 342 c 477 g 301 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-CCUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUC--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GG --UGU-AGU( U----UAAUA -----C---) GCUA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -AGCA-UUUC G-AAC-UGGC G-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-C-G C-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS She.putre3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071. ACCESSION No information KEYWORDS No information. SOURCE Shewanella putrefaciens str. B.W. Hammer 95 ATCC 8071. ORGANISM Shewanella putrefaciens. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 8071 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82133 ATCC 8071 = IFO 3908 = CCUG 13452 = NCIMB 10471 = IAM 12079 (T) biol_source= butter with surface taint isolate_name= B.W. Hammer 95 BASE COUNT 361 a 325 c 458 g 289 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UCCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GAG- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUC--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-AG-GG --UGU-AGC( U---UUAAUA -----C---) GCUA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -AGCA-UUUC G-AAC-UGGC G-AACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------C|G -GA-GU-UUG -GU-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACA -CUGGG-CUC 1741 UC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUC 1981 -NCN-A--(- GAGA-)-UAG -N-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAC-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.C.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.12.3 PAL.HALOPLANKTIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.12.3 PAL.HALOPLANKTIS_SUBGROUP. ORGANISM 2.14.3.12.3 PAL.HALOPLANKTIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.piscic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas piscicida str. C201 CERBOM. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas piscicida str. C201 CERBOM. ORGANISM Pseudoalteromonas piscicida. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82141|g1050926 isolate_name= C201 CERBOM BASE COUNT 366 a 308 c 431 g 284 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AGA AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGG-- -----C---- 601 --(------- ---UCCG--- ---)------ -----N---| --NUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUNN G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -GA-GC-UGG -GG-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAC -AACUN-NNN 1741 NA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG AGC-A-G-C- GA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CNCUU-AAAG -CC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 AA........ .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.rubra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas rubra. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas rubra. ORGANISM Pseudoalteromonas rubra. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov ., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82147|g1050889 ATCC 29570 (T) = DSM 6064 BASE COUNT 367 a 316 c 435 g 305 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUU---A -GGUG-G-GG 421 -GAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| --CUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UN-AG-( GU-AAC-GG) -C-UNACC-A A|-GGC-NA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -GA-GC-UGG -GG-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAC -AACUU-UUC 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG UGC-U-G-C- GA-ACU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CACUU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-C.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.luteov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas luteoviolacea. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas luteoviolacea. ORGANISM Pseudoalteromonas luteoviolacea. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82144|g1050884 NCIMB 1893 (T) = DSM 6061 = ATCC 33492 BASE COUNT 370 a 319 c 438 g 304 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CGU-G C-CGUA---A -GGUG-G-GG 421 -GAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGG-- -----C---- 601 --(------- ---UUCG--- ---)------ -----G---| --CUCU--C- G--CCU---- 661 ----UAUG-- AUC---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -GA-GC-UGG -GG-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAC -AACUU-UUC 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACU-A--(- GAGA-)-UAG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG UGC-U-G-C- GA-ACU-U(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.purple 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Holmstrom,C. JOURNAL Thesis, Dept gen. and marine mikrobiologi, Goteborg Univ. (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25522 legacy_attribute= biovar:unknown, unnamed purple bacterium BASE COUNT 359 a 300 c 420 g 286 t 3011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUU- G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGG|--C--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUU---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCU---- 661 ----AAAG-- AUU---G-|C CCAAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-G-C-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A--G-GU --UAC-GUU( UU---UAAUA ----GA---) AGCG-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-UCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGU C-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UGG -GG-UC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- --------AC -AACUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GUC-----(G CAA)-----G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-GAAGG-CC UAC--C-UUG ACA-UC|--- ---------C ---AGAG--- -AA----AUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCUUA-AAAG -CU-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CU-AAA-(UC -AGA-AU)-G UUG-UGC-G- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- G......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas denitrificans. ORGANISM Pseudoalteromonas denitrificans. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82138|g1050882 BASE COUNT 375 a 316 c 434 g 294 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-NUGGG- A-A--UAU-G C-CUUU---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCU---- 661 ----AAAG-- AUU---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UA--UAG( U---UUAAUA -----G---) ACUA-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACCUUCGUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-GACUA-GA GUA-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-UA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCN- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -GA-GC-UGG -AA-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAU -GACUU-UUC 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAG 1981 -ACU-A--(- GAGA-)-UAG -A-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC NA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-ANG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -CC-U-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UAG-U-CU -AA-CU---- ---------- ---------- -----(---- -GCUG....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.citrea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas citrea. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas citrea. ORGANISM Pseudoalteromonas citrea. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82137|g1050880 NCIMB 1889 (T) = ATCC 29719 BASE COUNT 371 a 322 c 442 g 300 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CUUU---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----AGAG-- AUU---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----G---) CUNC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-GACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UGG -GG-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAC -AACUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-GCC-U(G 2881 -CGA)AGGU- ---------- UA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas aurantia. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas aurantia. ORGANISM Pseudoalteromonas aurantia. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82135|g1050879 BASE COUNT 371 a 321 c 443 g 300 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CUUU---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----AGAG-- AUU---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----G---) CUAU-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-NA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-GACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UGG -GG-UC---- ---------- 1681 -(CUU-CG)- ---------- ---------- ---------- -------GAC -AACUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-GCC-U(G 2881 -CGA)AGGU- ---------- UA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15114|g710320 geog_source= Pele's Vents, Loihi Seamount, Hawaii library_source= Pele's Vents Bacterium DNA BASE COUNT 381 a 324 c 445 g 311 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U AAAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UAU-G C-CUUA---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UAAG-- AUU---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-A CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --AG-GAG-- GA-A-AG-GU --UAA-GUG( U----UAAUA -----G---) CAUU-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAAG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GG-UC---- ---------- 1681 -(-UU-CG)- ---------- ---------- ---------- -------GAC -UUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UGG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-CA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.11w103 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 11w103.. ACCESSION No information KEYWORDS No information. SOURCE clone 11w103. ORGANISM clone 11w103. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89346 BASE COUNT 60 a 49 c 71 g 47 t 4149 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .......GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-UCA CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC--U 961 G-U-GU-G-A A-GAA--G-G AA(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --AG-GAG-- GA-A-AG-GU --UGG-AUG( U----UAAUA -----G---) CAUU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUU..... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.nigrif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas nigrifaciens. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas nigrifaciens. ORGANISM Pseudoalteromonas nigrifaciens. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82146|g1050886 NCIMB 8614 (T) = ATCC 19375 BASE COUNT 369 a 322 c 439 g 301 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACN-U(G 2881 -CGA)ANGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-NA-CC A-CGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.halopl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas haloplanktis. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas haloplanktis. ORGANISM Pseudoalteromonas haloplanktis. REFERENCE 1 AUTHORS Gauthier,M.J., Lafay,B., Christen,R., Fernandez,L., Acquaviva,M., Bonin,P. and Bertrand,J.C. TITLE Marinobacter hydrocarbonoclasticus gen. nov., sp. nov., a new, extremely halotolerant, hydrocarbon-degrading marine bacterium JOURNAL Int. J. Syst. Bacteriol. 42, 568-576 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67024 Former RDP Sids: Altm.halop NB: pro synon. Alteromonas tetraodonis former name Alteromonas haloplanktis BASE COUNT 377 a 325 c 448 g 307 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ANAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --CUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-N-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UGG 1741 CA--AA---- -----(NAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGA-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.antarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas antarctica str. NF3 CECT 4664. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas antarctica str. NF3 CECT 4664. ORGANISM Pseudoalteromonas antarctica. REFERENCE 1 AUTHORS Bozal,N., Tudela,E., Rossello-Mora,R., Lalucat,J. and Guinea ,J. TITLE Pseudoalteromonas antarctica sp.nov., new bacteria isolated from antarctic coastal environment JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X98336|g1707647 isolate_name= NF3 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 387 a 342 c 464 g 320 t 2863 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CCUAG-AUU -GAAC-GC-- UGCC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --CUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-CU --UAG-UGG( U----UAAUA -----C---) CCAU-UG-AG 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGA-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC UGGGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.nigrf2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas nigrifaciens. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas nigrifaciens. ORGANISM Pseudoalteromonas nigrifaciens. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11271 Former RDP Sids: Altm.nigrf NB: former name Alteromonas nigrifaciens BASE COUNT 162 a 140 c 184 g 123 t 3767 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -WGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----NGUA-G UC----CWC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --SS-(KAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ...G-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GU-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACY-U(G 2881 -CGA)RRGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.undina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas undina. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas undina. ORGANISM Pseudoalteromonas undina. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82140|g1050893 NCIMB 2128 (T) = ATCC 29660 BASE COUNT 370 a 308 c 435 g 300 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-A -GG--CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGA-U-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GNUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAN- G-CN-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G UU-AAAACUN -AAA-UGAAU UG-ACGGG-G -G-C-NN--- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-NGUC-AU NAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-N-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGNUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA-CC A-CGGA-GUG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR166 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35471|g529993 BASE COUNT 218 a 173 c 250 g 174 t 3561 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 -G-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)---C-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGCCU-A ACUCC--UG( CCA--GCAGC CGCG-UA-A) U-A-C--GAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-G-CG- UAC-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC---AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.haltet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC IAM 14160. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas haloplanktis subsp. tetraodonis str. GFC IAM 14160. ORGANISM Pseudoalteromonas haloplanktis. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82139|g1050892 Former RDP Sids: Pal.tetdon IAM 14160 = DSM 9166 (T) = ATCC 51193 isolate_name= GFC BASE COUNT 369 a 318 c 437 g 303 t 2949 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-UA... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.halop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas haloplanktis. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas haloplanktis. ORGANISM Pseudoalteromonas haloplanktis. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11270 Former RDP Sids: Altm.halo2 NB: pro synon. Alteromonas tetraodonis former name Alteromonas haloplanktis BASE COUNT 164 a 139 c 177 g 122 t 3774 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .....U--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -WGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CWC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --SS-(KAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GU-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.marinus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio marinus str. MP-1 ATCC 15381 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio marinus str. MP-1 ATCC 15381 (T). ORGANISM Vibrio marinus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74709 ATCC 15381 (T) = NCTC 1144 = NCIMB 1144 (T) isolate_name= MP-1 NB: although same ATCC as V.marinus, not the same seq. a second independent lab confirms that V.marinus is correct BASE COUNT 367 a 319 c 443 g 307 t 2940 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ANGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CN-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --CUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-G-GU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- -----(NAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GNGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-N-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-N-N G-UU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR160 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific Bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35470|g529992 BASE COUNT 198 a 158 c 240 g 154 t 3626 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CGU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -G-UCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-G-C-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 G-C--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAU)-CCU- ----GGUA-G UC----C... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.carrag 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas carrageenovora. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas carrageenovora. ORGANISM Pseudoalteromonas carrageenovora. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82136|g1050881 IAM 12662 (T) = ATCC 43555 BASE COUNT 370 a 314 c 434 g 301 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-AC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GUU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-N--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-NU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.atlant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas atlantica. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas atlantica. ORGANISM Pseudoalteromonas atlantica. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82134|g1050878 IAM 12927 (T) = ATCC 19262 NB: former name Alteromonas atlantica BASE COUNT 367 a 319 c 436 g 299 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ANAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-GU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GCU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ANG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.espeji 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas espejiana. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas espejiana. ORGANISM Pseudoalteromonas espejiana. REFERENCE 1 AUTHORS Gauthier,G., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis of the genera Alteromonas, Shewanella, and Moritella using genes coding for small-subunit rRNA sequences and division of the genus Alteromonas into two genera, Alteromonas (emended) and Pseudoalteromonas gen. nov., and proposal of twelve new species combinations JOURNAL Int. J. Syst. Bacteriol. 45, 755-761 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82143|g1050883 NCIMB 2127 (T) = ATCC 29659 BASE COUNT 364 a 317 c 431 g 296 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-A -GG--CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C N--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NNAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--CAU-G C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGGGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUCU--C- G--CCU---- 661 ----UUAG-- AUU---G-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-NU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC G-AAC-UGGC A-AACUA-GA GUG-----UG A-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCACCUG-- ---------- ---------- ---------G 1501 GUC--AA-CA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GCU -CUGUU-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UA|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-UCCA -GAA-G-UAG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-N G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pal.espej2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoalteromonas espejiana. ACCESSION No information KEYWORDS No information. SOURCE Pseudoalteromonas espejiana. ORGANISM Pseudoalteromonas espejiana. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11269 Former RDP Sids: Altm.espej NB: former name Alteromonas espejiana BASE COUNT 145 a 124 c 163 g 113 t 3831 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .....U--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCN-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-AG-RU --UAG-UAG( U----UAAUA -----C---) CUGC-UA-GU 1081 ---------- -------U-G U-GA-CGUU- A-CUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .UGNCG-CUK AU-G------ -------UA- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -AA-GC-UCG -GA-GC---- ---------- 1681 -(-CU-CG)- ---------- ---------- ---------- -------GCU -CUGUU-UUU 1741 CA--AA---- --SS-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ......GG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG UGC-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCGAA-U CACUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGA-AU)-G ACG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.C.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.12.4 FERRIMONAS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.12.4 FERRIMONAS_ASSEMBLAGE. ORGANISM 2.14.3.12.4 FERRIMONAS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.90P 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 90P. str. 90P. ACCESSION No information KEYWORDS No information. SOURCE str. 90P. str. 90P. ORGANISM str. 90P. REFERENCE 1 AUTHORS Gosink,J.J. and Staley,J.T. TITLE Biodiversity of gas vacuolate bacteria from Antarctic sea ice and water JOURNAL Appl. Environ. Microbiol. 61 (9), 3486-3489 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14582|g975735 isolate_name= 90P BASE COUNT 383 a 312 c 446 g 326 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UUU-G C-CUUG---U -UGCG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UC 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GGUGGC- CUCUAU---- 601 --(------- ---UUAU--- ---)------ -----AU--| -GCUAU--C- G--CGA---- 661 ----CAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GU- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-C-- CAK-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-GU --AUU-GGU( -----UAAUA -----U---) CUAA-UA-UC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-SA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UA- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGU U-AACUA-GA GUU-----UU G-UA-GAGGG UGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGU C--UA-UU-- -------A|G -AA-GU-UUG -UG-GC---- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- -------GCC -GUGGG-UUU 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-AUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAG -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---AU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -AU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AA -UA--CAAAG GGU-U-G-C- UA-GCC-U(G 2881 -CGA)AGGU- ---------- AU-GCGAA-U CUCAU-AAAG -UU-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UCA 3121 U-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UCCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-C G-AU-GA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Frm.balear 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ferrimonas balearica str. PAT DSM 9799 (T). ACCESSION No information KEYWORDS No information. SOURCE Ferrimonas balearica str. PAT DSM 9799 (T). ORGANISM Ferrimonas balearica. REFERENCE 1 AUTHORS Rossello-Mora,R.A., Ludwig,W., Kaempfer,P., Amann,R. and Schleifer,K.-H. TITLE Ferrimonas balearica gen. nov., spec. nov., a new marine facultative Fe(III)-reducing bacterium JOURNAL Syst. Appl. Microbiol. 18, 196-202 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9799 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93021 biol_source= isolate ARB_1A6A41EF isolate_name= PAT BASE COUNT 383 a 350 c 492 g 319 t 2832 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAA CAUUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAUU UGUUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUAGG- A-A--UUU-G C-CCAG---U -CGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---A-|G CCUAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UAG-UGG( U----UAAUA -----C---) CCGC-UA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GC-CA- 1261 A-GU-CAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCU U-GGCUA-GA GUC-----CU U-GA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 CAA--GA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-UU-- -------A|G -GA-GU-CUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGG-UUC 1741 CA--AA---- --GC-(UAA- ---C)G-CA- UUAA-AUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-UGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-AG -UA--CAAAG GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCCAA-U CCCAU-AAAG -CU-G-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCCC-UAG G(GGA-A)CC UGGGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.D 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.13 VIBRIO_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.13 VIBRIO_GROUP. ORGANISM 2.14.3.13 VIBRIO_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.D.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.13.1 PHOTOBACTERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.13.1 PHOTOBACTERIUM_SUBGROUP. ORGANISM 2.14.3.13.1 PHOTOBACTERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.hollisa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio hollisae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio hollisae. ORGANISM Vibrio hollisae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11304 NB: release status presumes JCM 10283 = ATCC 33564 BASE COUNT 145 a 126 c 179 g 111 t 3815 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... ..GU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCU-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CC 1021 --GU-GAG-- GA-A-GG-UA --GCG-UAG( U----UAAUA -----C---) CUGC-GU-UN 1081 ---------- -------A-U U-GA-CGUU- A-GCG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .KAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-NCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----KGUA-G UC----CDC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-CUG -UG-GU---- ---------- 1681 -(CUN-KA)- ---------- ---------- ---------- -------ACC -GUGGC-KUU 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-GUNGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUN- ---------- GA-GCGAA-U CCCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.hollisa3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio hollisae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio hollisae. ORGANISM Vibrio hollisae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74707 CIP 101886 (T) = ATCC 33564 (T) BASE COUNT 358 a 330 c 479 g 295 t 2914 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAU GAAC-AA-UC (--CUU---- ---------- ---------- 241 --------CG -)GG-UGCGU UCAUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GG-CUGGG- A-A--CCU-G C-CCUG---A -CGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUG---G-|G CCCAG----- -UU|----GG G--AUUA-G- CUG-G---UU 721 GG-UG-NG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CC 1021 --GU-GAG-- GA-A-GG-UA --GCG-UAG( U----UAAUA -----C---) CUGC-GU-UA 1081 ---------- -------C-U U-GA-CGUU- A-GCG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGU- 1321 -GGCA-UUUU G-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-CUG -UG-GU---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------ACC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----GCC 1981 -GGA-A--(- GAGA-)-UUC -U-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----U-G|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-N G-UU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.hollisae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio hollisae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio hollisae. ORGANISM Vibrio hollisae. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56583 Ref 1: paper has cc # as ATCC 14126 ATCC 33564 (T) = CIP 101886 (T) BASE COUNT 368 a 329 c 476 g 301 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAU GAAC-AA-UC (--UU----- ---------- ---------- 241 --------CG -)GG-UGCGU UCAUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----GAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--G- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACG-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-NG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CC 1021 --GU-GAG-- GA-A-GG-UA --GCG-UAG( U----UAAUA -----C---) CUGC-GU-UA 1081 ---------- -------C-U U-GA-CGUU- A-GCG-N-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C C--GGG-C(- UU-A)AACCU -GG-G-AGU- 1321 -GGCA-UUUU G-AAC-UGGC A-GGCUUAGA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-CUG -UG-GU---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------ACC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CCGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAC--- -AA----GCC 1981 -GGA-A--(- GAGA-)-UCN -N--GUN--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUN- ---------- GA-GCGAA-U CCCAG-AAAG -UG-C-AUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-C- A-CGGU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Mcet.j 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G., Distel,D.L. and Herring,P.J. TITLE Polymerase chain reaction and 16S rRNA gene sequences from the luminous bacterial symbionts of two deep-sea anglerfishes JOURNAL J. Mar. Biol. Ass. U.K. 72, 149-159 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19105 symbiont_of= Melanocetus johnsoni NB: IDENT: general vibrio BASE COUNT 366 a 305 c 440 g 309 t 2956 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GG-CUGGG- A-A--CCU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAU---- ---------- ----CAAA-- ---GAGGAG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CUUCU--C- G--CGU---- 661 ----CAGG-- AUG---G-|G CCCAG----- -UU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CUA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-AAG-- GA-A-GG-UU --AAU-AAG( C----UAAUA -----C---) CUUA-UU-AA 1081 ---------- -------U-U U-GA-CGUU- A-AUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CA-UGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUU G-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -GAA-A--(- GAGA-)-UUU -C-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG GGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- AA-GCGAA-U CCCAC-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCUG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GG..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Crsa.c 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G., Distel,D.L. and Herring,P.J. TITLE Polymerase chain reaction and 16S rRNA gene sequences from the luminous bacterial symbionts of two deep-sea anglerfishes JOURNAL J. Mar. Biol. Ass. U.K. 72, 149-159 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19106 symbiont_of= Cryptosaras couesi NB: IDENT:general vibrio BASE COUNT 379 a 289 c 423 g 325 t 2960 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAU-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAU -GG-CUGGG- A-A--CUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGAG- GC--UU---- 601 --(------- ---AUUA--- ---)------ -----AA--| -CUUCU--U- G--CGU---- 661 ----CAGG-- AUA---G-|G CCCAG----- -UU|----GA G--AUUA-G- CUA-A---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACG-A A|-GGU-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GA-UA --AUA-UAA( U----UAAUA -----C---) UUAU-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUC-C-- 1201 GAG-CAUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUU G-AAC-UGGC A-AACUA-GA GUU-----UU G-UA-GAGGU GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCUCUG-- ---------- ---------- ---------G 1501 ACA--AA-AA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UA-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---ACAG--- -UA----ACU 1981 -AAA-A--(- GAAA-)-UUU -U-AGUU--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-UGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG AGU-A-G-C- AA-GGC-A(G 2881 -CGA)UGUG- ---------- GA-GCGAA-U CUCAA-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.aspartig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio aspartigenicus str. GSP-1 ATCC 49962. ACCESSION No information KEYWORDS No information. SOURCE Vibrio aspartigenicus str. GSP-1 ATCC 49962. ORGANISM Vibrio aspartigenicus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49962 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M98446 isolate_name= GSP-1 NB: Problems upstream of ~185r (?insertion) Not retrieveable from GB 94.06.06 BASE COUNT 340 a 297 c 417 g 286 t 3036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ...AN-N-GG 421 -NAU-AA-CC G--------- ------UN-- G(-GAAN-)C -UACG-N--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-N ..-....... ......G(-- ------UAAG 541 UA-GUC---- -)AG------ ---------G AC--CAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAU--C- G--CGU---- 661 ----UGGG-- AUG---G-|G CCCAG----- -UU|----AG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAG A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UC --GUG-UAC( U----UAAUA -----C---) GUGC-AC-GG 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-NA-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--UA-CU-- -------U|G -GA-GG-UUG -AG-GU---- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- -------ACU -UUGGC-UUU 1741 CG--GC---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGCG--- -AA----GCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---R(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- UA-GCGAA-U CCCUU-AAAG -UU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-NG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.asparti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio aspartigenicus str. GSP-1 ATCC 49962. ACCESSION No information KEYWORDS No information. SOURCE Vibrio aspartigenicus str. GSP-1 ATCC 49962. ORGANISM Vibrio aspartigenicus. REFERENCE 1 AUTHORS Tanner,R.S., Poynter,N.L., Mandelco,L. and Woese,C.R. TITLE Vibrio aspartigenicus, sp nov, a halophilic, factultatively anaerobic eubacterium that produces aspartic acid JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49962 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M98446 isolate_name= GSP-1 BASE COUNT 339 a 297 c 417 g 286 t 3037 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ...AN-N-GG 421 -NAU-AA-CC G--------- ------UN-- G(-GAAN-)C -UACG-N--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-N ---------- ------G(-- ------UAAG 541 UA-GUC---- -)AG------ ---------G AC--CAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAU--C- G--CGU---- 661 ----UGGG-- AUG---G-|G CCCAG----- -UU|----AG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-G--C ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAG A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UC --GUG-UAC( U----UAAUA -----C---) GUGC-AC-GG 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-NA-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--UA-CU-- -------U|G -GA-GG-UUG -AG-GU---- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- -------ACU -UUGGC-UUU 1741 CG--GC---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGCG--- -AA----GCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---R(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- UA-GCGAA-U CCCUU-AAAG -UU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-NG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sav.costi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salinivibrio costicola. ACCESSION No information KEYWORDS No information. SOURCE Salinivibrio costicola. ORGANISM Salinivibrio costicola. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11298 Former RDP Sids: V.costicol V.costico2 NCIMB 701 (T) = NRC 37001 = ATCC 35508 NB: former name Vibrio costicola BASE COUNT 153 a 133 c 183 g 123 t 3784 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .AG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CDCAAU-- GG-GG-(GAG A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UC --GUG-UAG( U----UAAUA -----C---) GUGC-AC-GG 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -AG-GU---- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- -------ACU -UUGGC-UUU 1741 CG-------- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- U-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-GAC-A(G 2881 -CKA)UGUU- ---------- UA-GCGAA-U CCCUU-AAAG -UU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sav.costic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salinivibrio costicola. ACCESSION No information KEYWORDS No information. SOURCE Salinivibrio costicola. ORGANISM Salinivibrio costicola. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74699 Former RDP Sids: V.costico2 V.costicol NCIMB 701 (T) = NRC 37001 = ATCC 35508 NB: former name Vibrio costicola BASE COUNT 369 a 328 c 468 g 317 t 2894 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 N--GA-AA-C GG---AGUA- UU-------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U U-UACU-GG- ACG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GG-CUGGG- A-A--CCU-G C-CCUG---A -CGAG-G-GG 421 -GAU-AA-CC G--------- ------UU-- G(-GAAA-)C -GACG-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------G-U CU-U--A-G- A--UUC-(-- --------AU 541 UC-A------ -)-GAG---- CU-NG----G AC--CAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAU--C- G--CGU---- 661 ----UGGG-- AUG---G-|G CCCAG----- -UU|----AG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAG A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UC --GUG-UAC( U----UAAUA -----C---) GUGC-AC-GG 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GU---- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- -------ACU -UUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGCG--- -AA----GCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- UA-GCGAA-U CCCUU-AAAG -UU-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-U--C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.damse4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium damsela subsp. damsela ATCC 33539 (T). ACCESSION No information KEYWORDS No information. SOURCE Photobacterium damsela subsp. damsela ATCC 33539 (T). ORGANISM Photobacterium damsela. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11277 (bases 1 to 190) Former RDP Sids: Lsn.damsel V.damsela2 ATCC 33539 (T) = CIP 102761 = CDC 2588-80 = NCIMB 2184 biol_source= damsel fish (Chromis punctipinnis) NB: former name Listonella -> Vibrio damsela BASE COUNT 144 a 112 c 173 g 105 t 3842 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CRCAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCMA UGCC-GC-GU 961 G-U-GU-G-R A-GAA--G-G CU(--DN--G --)GG-UUGU AAA--GCAC| UUUC-AG-NG 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-SGUU- A-CCU-D-YA G-AA--GAAG ---------C 1141 -ACNGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GDAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CKN-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-GURGA C|G|G-CCU- G-GGGAGUAC 1801 GGU-S---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GY-C YUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG GGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUN- ---------- GA-GCGAA-U CCCAG-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.damse5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium damsela subsp. damsela CIP 102761. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium damsela subsp. damsela CIP 102761. ORGANISM Photobacterium damsela. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74700 Former RDP Sids: V.damsela CIP 102761 = CDC 2588-80 = NCIMB 2184 = ATCC 33539 (T) biol_source= damsel fish (Chromis punctipinnis) NB: former name Vibrio damsela BASE COUNT 369 a 325 c 466 g 302 t 2914 others ORIGIN 1 .......... .......... .......... .....AUUNA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGA-A--(- GAGA-)-UUC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG GGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UNG 3121 A-UNG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ordalii4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio ordalii str. MSC 2-75. ACCESSION No information KEYWORDS No information. SOURCE Vibrio ordalii str. MSC 2-75. ORGANISM Vibrio ordalii. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71834|g967117 biol_source= coho salmon (Oncorhynchus kisutch) isolate_name= MSC 2-75 BASE COUNT 157 a 137 c 198 g 135 t 3749 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-N A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UNGC-GGC-A -NGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACNNAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUNAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAU...... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .....GGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NN-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-CCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CNGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGA-A--(- GAGA-)-UUC -G-AGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.damsel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium damsela subsp. piscicida NCIMB 2058 (T). ACCESSION No information KEYWORDS No information. SOURCE Photobacterium damsela subsp. piscicida NCIMB 2058 (T). ORGANISM Photobacterium damsela. REFERENCE 1 AUTHORS Gauthier,G., Lafay,B., Ruimy,R., Breittmayer,V., Nicolas,J.L ., Gauthier,M. and Christen,R. TITLE Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 139-144 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78105|g642257 BASE COUNT 360 a 323 c 458 g 291 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CUGC-AC-UN 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGA-A--(- GAGA-)-UUC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG GGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UNG 3121 A-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.damse2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium damsela str. wild isolate. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium damsela str. wild isolate. ORGANISM Photobacterium damsela. REFERENCE 1 AUTHORS Gauthier,G., Lafay,B., Ruimy,R., Breittmayer,V., Nicolas,J.L ., Gauthier,M. and Christen,R. TITLE Small-subunit rRNA sequences and whole DNA relatedness concur for the reassignment of Pasteurella piscicida (Snieszko et al) Janssen and Surgalla to the genus Photobacterium as Photobacterium damsela subsp. piscicida comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 139-144 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78106|g663066 geog_source= Mediterranean Sea biol_source= sea bass (Dicentrarchus labrax) isolate_name= wild isolate BASE COUNT 362 a 324 c 460 g 295 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GANC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CUGC-AC-UN 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGA-A--(- GAGA-)-UUC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAGAG GGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.histam 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium histaminum str. C-8. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium histaminum str. C-8. ORGANISM Photobacterium histaminum. REFERENCE 1 AUTHORS Okuzumi,M., Hiraishi,A., Kobayashi,T. and Fujii,T. TITLE Photobacterium histaminum sp. nov., a histamine-producing marine bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 631-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25308|g435454 isolate_name= C-8 BASE COUNT 370 a 320 c 475 g 305 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA--C (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -CG|-GC--G AACG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UA --GUG-UAG( U----UAACA -----C---) CUGC-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-GAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 AGA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-GG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGA-A--(- GAGA-)-UUC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUAGA AUGGC-A-UA -UA--GAGAG GGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U GCGAG-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.leiog3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium leiognathi str. L1 ATCC 25521 (T). ACCESSION No information KEYWORDS No information. SOURCE Photobacterium leiognathi str. L1 ATCC 25521 (T). ORGANISM Photobacterium leiognathi. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25521 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11282 ATCC 25521 (T) = CIP 665 = CIP 66.5 isolate_name= L1 BASE COUNT 151 a 127 c 178 g 117 t 3803 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -WGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CA --GUG-UCG( U----UAAUA -----G---) CGGC-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .....GC(-U AA-G)GCGG- -YYYYCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GYAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -U--GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|Y|N-YYU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.leiogn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium leiognathi str. L1 CIP 66.5. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium leiognathi str. L1 CIP 66.5. ORGANISM Photobacterium leiognathi. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 66 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74686 CIP 66.5 = CIP 665 = ATCC 25521 (T) isolate_name= L1 BASE COUNT 370 a 329 c 462 g 303 t 2912 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CA --GUG-UCG( U----UAAUA -----G---) CGGC-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGCGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.leiog2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium leiognathi str. PL721. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium leiognathi str. PL721. ORGANISM Photobacterium leiognathi. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21730 isolate_name= PL721 BASE COUNT 322 a 281 c 405 g 266 t 3102 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .CG|-GC--G AGCG-GCGG- 361 -AUCG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-NAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAWA-- ---GAGGGG- GA---C---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CWCAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CA --GUG-UCG( U----UAAUA -----G---) CGGC-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC --AACWA-GA GUC-----NU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCC- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGNAU UG-ACGGG-G -G-U-GC--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(N...AA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -USC-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-NG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACW-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.leiog4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium leiognathi str. L1 ATCC 25521 (T). ACCESSION No information KEYWORDS No information. SOURCE Photobacterium leiognathi str. L1 ATCC 25521 (T). ORGANISM Photobacterium leiognathi. REFERENCE 1 AUTHORS Okuzumi,M., Hiraishi,A., Kobayashi,T. and Fujii,T. TITLE Photobacterium histaminum sp. nov., a histamine-producing marine bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 631-636 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25521 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25309|g435452 ATCC 25521 (T) = CIP 665 = CIP 66.5 isolate_name= L1 BASE COUNT 372 a 326 c 465 g 305 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA--C (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- -CG|-GC--G AACG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-CA --GUG-UCG( U----UAAUA -----G---) CGGC-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GCN-A--(- GAGA-)-UGC -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- ----AA---| CUC-UG-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--GAGAG GGC-U-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.angus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium angustum.. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium angustum. ORGANISM Photobacterium angustum. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11281 BASE COUNT 164 a 133 c 185 g 124 t 3770 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCY -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CWCAAU-- GG-GG-(GAA A)-CCC-USA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UY-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --NU-GAK-- GA-A-GG-CG --GUG-GAG( U----UAAUA -----A---) CUYC-AC-YC 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCKG- 1441 -U-K-GC(-G AA-G)GCGG- -CYYYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----KGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACU-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.angus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium angustum. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium angustum. ORGANISM Photobacterium angustum. REFERENCE 1 AUTHORS Okuzumi,M., Hiraishi,A., Kobayashi,T. and Fujii,T. TITLE Photobacterium histaminum sp. nov., a histamine-producing marine bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 631-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25307|g435453 ATCC 25915 (T) = CIP 75.10 (T) BASE COUNT 376 a 320 c 458 g 310 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AACG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UA-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CA --GUG-AAG( U----UAAUA -----G---) CUUC-AC-UG 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUANA AUGGC-G-UA -UA--GAGAG GGC-U-G-C- CA-ACU-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CCGAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.angust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium angustum. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium angustum. ORGANISM Photobacterium angustum. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74685 CIP 75.10 (T) = ATCC 25915 (T) BASE COUNT 361 a 314 c 441 g 301 t 2959 others ORIGIN 1 .......... .......... .......... ........GA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUUGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NNNNU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CA --GUG-NAG( U----UAAUA -----G---) CUUC-AC-NG 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -NGCA-UUUU G-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ANAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UAG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---U(---UA ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACC. .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR134 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35467 BASE COUNT 58 a 41 c 61 g 43 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... ....GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CA --GUA-AAG( U----UAAUA -----G---) CUUU-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.spDSJ4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio sp. str. DSJ4. ACCESSION No information KEYWORDS No information. SOURCE Vibrio sp. str. DSJ4. ORGANISM Vibrio sp. REFERENCE 1 AUTHORS Kato,C., Sato,T. and Horikoshi,K. TITLE Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples JOURNAL Biodiv. and Conserv. 4, 1-9 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21226|g443707 isolate_name= DSJ4 BASE COUNT 384 a 343 c 470 g 312 t 2867 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUA---G -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGC---- 661 ----UAAG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GG-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UUCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GCG-UAG( U----UAAUA -----G---) CUGC-GU-UG 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAC-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAG 1981 -ACC-A--(- GAGA-)-UGG -A-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UCCA UG|U-CUG-- UCG-UCA|AG C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AAC------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-CG -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- CA-ACC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.phosph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium phosphoreum str. Og61. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium phosphoreum str. Og61. ORGANISM Photobacterium phosphoreum. REFERENCE 1 AUTHORS Haygood,M.G., Distel,D.L. and Herring,P.J. TITLE Polymerase chain reaction and 16S rRNA gene sequences from the luminous bacterial symbionts of two deep-sea anglerfishes JOURNAL J. Mar. Biol. Ass. U.K. 72, 149-159 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19107 isolate_name= Og61 NB: IDENT:general vibrio BASE COUNT 374 a 322 c 453 g 311 t 2916 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-A C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CG --UUG-GAG( U----UAAUA -----G---) CUUU-AG-CG 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CA .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.phosp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium phosphoreum. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium phosphoreum. ORGANISM Photobacterium phosphoreum. REFERENCE 1 AUTHORS Okuzumi,M., Hiraishi,A., Kobayashi,T. and Fujii,T. TITLE Photobacterium histaminum sp. nov., a histamine-producing marine bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 631-636 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D25310|g435455 ATCC 11040 = NCIMB 1282 BASE COUNT 374 a 322 c 459 g 308 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUGAN-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUCAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AACG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-A C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CG --UUG-GAG( U----UAAUA -----G---) CUUC-AG-CG 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GUUC-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGA-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUAGA AUGGC-G-UA -UA--GAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCGAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.phosp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium phosphoreum. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium phosphoreum. ORGANISM Photobacterium phosphoreum. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11284 ATCC 11040 = NCIMB 1282 BASE COUNT 165 a 129 c 186 g 122 t 3774 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GY-AG- C-A---GU-G 901 GGG-AAUAUU G-CWCAAU-- GG-GG-(GAA A)-CCC-UGA US-A|-GCCA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CG --UUG-GAG( U----UAAUA -----G---) CUUC-AG-CG 1081 ---------- -------C-U U-GA-CGDU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCKG- 1441 -U-G-CC(-G AA-G)GCKG- -YYYYCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.phosp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium phosphoreum. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium phosphoreum. ORGANISM Photobacterium phosphoreum. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74687 ATCC 11040 = NCIMB 1282 BASE COUNT 371 a 323 c 455 g 305 t 2922 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUNGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCAU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-A C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CG --UUG-GAG( U----UAAUA -----G---) CUUC-AG-CG 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|C AAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -AGCA-UUUU G-AAC-UGGC A-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C N-G....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ilpiscar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio iliopiscarius str. PS1 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio iliopiscarius str. PS1 (T). ORGANISM Vibrio iliopiscarius. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information REFERENCE 2 AUTHORS Onarheim,A.M., Wiik,R., Burghardt,J. and Stackbrandt,E. TITLE Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. JOURNAL Syst. Appl. Microbiol. 17, 370-379 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70636|g1022371 biol_source= herring (Clupea harengus) isolate_name= PS1 (T) BASE COUNT 148 a 108 c 165 g 129 t 3826 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUUGAU-A- (--CU----- ---------- ---------- 241 --------UG -)CU-AUCAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-A C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU.... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. .GUA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-CG --UUG-GAG( U----UAAUA -----G---) CUUU-AG-CG 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UCGA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.D.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.13.2 V.CHOLERAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.13.2 V.CHOLERAE_SUBGROUP. ORGANISM 2.14.3.13.2 V.CHOLERAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71819|g967114 Former RDP Sids: V.anguill7 NCIMB 2129 = HI 10 biol_source= rainbow trout (Oncorhynchus mykis), serotype O1 NB: former name Vibrio anguillarum BASE COUNT 330 a 279 c 409 g 260 t 3098 others ORIGIN 1 .......... .......... .......... ...UAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C..... |......... 1201 .......... .......... ........|. UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGU N--NA-NU-- -------U|G -GA-GN-NNG -UN-NN---- ---------- 1681 -(NNN-GA)- ---------- ---------- ---------- -------GCC -GUGGN-UUN 1741 NG--GN---- --NC-(UAA- ---C)G-CG- UUAA-NUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU..... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum str. 775. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum str. 775. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71814|g967109 Former RDP Sids: V.anguill2 biol_source= coho salmon (Oncorhynchus kisutch), serotype O1 isolate_name= 775 NB: former name Vibrio anguillarum BASE COUNT 329 a 280 c 407 g 262 t 3098 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCNGC CGCGGUN-A) U-A-C..... |......... 1201 .......... .......... ........|. UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGU-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UNGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGU N--NA-NU-- -------U|G -GA-GN-NNG -UN-NN---- ---------- 1681 -(NNN-GA)- ---------- ---------- ---------- -------GCC -GUGGN-UUN 1741 NG--GN---- --NC-(UAA- ---C)G-CG- UUAA-NUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-C... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71829|g967104 Former RDP Sids: V.anguil17 biol_source= turbot (Scophthalmus maximus), serotype O1 NB: former name Vibrio anguillarum BASE COUNT 139 a 115 c 175 g 117 t 3830 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GC..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71826|g967106 Former RDP Sids: V.anguil14 biol_source= turbot (Scophthalmus maximus), serotype O1 NB: former name Vibrio anguillarum BASE COUNT 139 a 115 c 175 g 117 t 3830 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GC..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71823|g967096 Former RDP Sids: V.anguil11 biol_source= turbot (Scophthalmus maximus), serotype O1 NB: former name Vibrio anguillarum BASE COUNT 140 a 115 c 174 g 117 t 3830 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GC..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71832|g967101 Former RDP Sids: V.anguil20 biol_source= turbot (Scophthalmus maximus), serotype O2a NB: former name Vibrio anguillarum BASE COUNT 170 a 148 c 211 g 140 t 3707 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GC..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AC 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C C......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71815|g967115 Former RDP Sids: V.anguill3 biol_source= Atlantic salmon (Salmo salar), serotype O2 NB: former name Vibrio anguillarum BASE COUNT 136 a 116 c 170 g 112 t 3842 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUN--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71818|g967100 Former RDP Sids: V.anguill6 NCIMB 2130 = HI 410 biol_source= saithe (Pollachius virens), serotype O2 NB: former name Vibrio anguillarum BASE COUNT 351 a 296 c 433 g 277 t 3019 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 NN-NNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 AC--NG---- --NN-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A NN-NAAACUC -AAA-UGAAU UG-ACGGG-N -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GN-AGA-(UC -AGA-AU)-G CUA-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71830|g967103 Former RDP Sids: V.anguil18 biol_source= cod (Gadus morhua), serotype O2a NB: former name Vibrio anguillarum BASE COUNT 136 a 117 c 174 g 113 t 3836 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .....GGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUN--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71824|g967108 Former RDP Sids: V.anguil12 biol_source= cod (Gadus morhua), serotype O2a NB: former name Vibrio anguillarum BASE COUNT 137 a 117 c 176 g 113 t 3833 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .....GGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71822|g967097 Former RDP Sids: V.anguil10 biol_source= cod (Gadus morhua), serotype O2a NB: former name Vibrio anguillarum BASE COUNT 137 a 117 c 176 g 113 t 3833 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .....GGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71831|g967102 Former RDP Sids: V.anguil19 biol_source= cod (Gadus morhua), serotype O2b NB: former name Vibrio anguillarum BASE COUNT 137 a 116 c 171 g 110 t 3842 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71816|g967110 Former RDP Sids: V.anguill4 biol_source= cod (Gadus morhua), serotype O2b NB: former name Vibrio anguillarum BASE COUNT 135 a 116 c 172 g 110 t 3843 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GN-NG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-A-UGU-U 2221 GG-G-(G... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71825|g967113 Former RDP Sids: V.anguil13 biol_source= cod (Gadus morhua), serotype O2b NB: former name Vibrio anguillarum BASE COUNT 192 a 166 c 249 g 158 t 3611 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ......GGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CA.)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu21 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71833|g967098 Former RDP Sids: V.anguil21 biol_source= cod (Gadus morhua), serotype O2 NB: former name Vibrio anguillarum BASE COUNT 192 a 166 c 249 g 158 t 3611 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ......GGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CA.)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71827|g967112 Former RDP Sids: V.anguil15 biol_source= cod (Gadus morhua), serotype O2b NB: former name Vibrio anguillarum BASE COUNT 192 a 166 c 249 g 158 t 3611 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 ......GGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CA.)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum str. 1247/1 ATCC 43313. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum str. 1247/1 ATCC 43313. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43313 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71817|g967111 Former RDP Sids: V.anguill5 biol_source= cod (Gadus morhua), serotype O9 isolate_name= 1247/1 NB: former name Vibrio anguillarum BASE COUNT 348 a 296 c 433 g 281 t 3018 others ORIGIN 1 .......... .......... .......... ...UAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UU --UUU-GCG( U----UAAUA -----G---) CGCA-GG-GA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 NN-NNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 AC--NG---- --UC-(UNA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A AU-UAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------N ---ACAG--- -GA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AC 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUC-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.anguil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11276 BASE COUNT 151 a 133 c 178 g 117 t 3797 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UB| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAK-C|C-WC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UUCG)--G GAG-GC-WG- C-W---NN-N 901 GGG-AAUAUU G-CWCAAU-- GG-GC-(GCA A)-GCC-UBA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UC-CG --)GG-UUGU AAA--GUAC| UUUC-AG-NN 1021 --KK-NNG-- GA-W-GG-UN --GUG-NUG( U----UAACA ----GC---) AGCC-AU-CA 1081 ---------- -------U-U U--A-CGCC- A-GCG-M-YA S-AA--GAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-K-GC(-G AA-G)GCKG- -YYYYCUK-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACN-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UNA- ---C)G-CG- UUAA-GURGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-S---(G CVA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ordalii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio ordalii str. DF3K CIP 103205 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio ordalii str. DF3K CIP 103205 (T). ORGANISM Vibrio ordalii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103205 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74718 CIP 103205 (T) = NCIMB 2167 = ATCC 33509 (T) biol_source= coho salmon (Oncorhynchus kisutch) isolate_name= DF3K isolate_name= DF1K BASE COUNT 353 a 317 c 452 g 294 t 2960 others ORIGIN 1 .......... .......... .......... ......UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CNUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CNG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-C UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGNG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -NGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ordalii5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio ordalii str. DF3K ATCC 33509 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio ordalii str. DF3K ATCC 33509 (T). ORGANISM Vibrio ordalii. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33509 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70641|g1022366 ATCC 33509 (T) = NCIMB 2167 = CIP 103205 (T) biol_source= coho salmon (Oncorhynchus kisutch) isolate_name= DF3K isolate_name= DF1K BASE COUNT 373 a 319 c 456 g 306 t 2922 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-NAU---- ---------- ---------- ---------- ---NNC-(-- --------U. 541 ......---- -)........ .......... ..-..AAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCACC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-NGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UN-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGUU C-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-NNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-ACCA -GAA-G-UGG 3121 U-UAG-U-UU -AA-CC---- -GCACUUUC- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- -GAGAGAGU- 3241 ---------- -NGAGG-A-C G-A....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ordalii3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio ordalii str. DF3K NCIMB 2167. ACCESSION No information KEYWORDS No information. SOURCE Vibrio ordalii str. DF3K NCIMB 2167. ORGANISM Vibrio ordalii. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71812|g967118 NCIMB 2167 = ATCC 33509 (T) = CIP 103205 (T) biol_source= coho salmon (Oncorhynchus kisutch) isolate_name= DF3K isolate_name= DF1K BASE COUNT 156 a 134 c 206 g 141 t 3739 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAU...... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .....GGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GC--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu22 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum str. C510 ATCC 12964. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum str. C510 ATCC 12964. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Valle,O., Dorsch,M., Wiik,R. and Stackebrandt,E. TITLE Nucleotide sequence of the 16S rRNA from Vibrio anguillarum JOURNAL Syst. Appl. Microbiol. 13, 257-257 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 12964 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X16895 Former RDP Sids: V.anguilla isolate_name= C510 NB: former name Vibrio anguillarum ATCC says ATCC 12964 is not the type strain ATCC 19264? BASE COUNT 385 a 329 c 475 g 314 t 2873 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --AU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGU-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU U-CACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUA-CA-U-- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.damse3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium damsela subsp. damsela NCIMB 2184. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium damsela subsp. damsela NCIMB 2184. ORGANISM Photobacterium damsela. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71835|g967051 Former RDP Sids: Lsn.damse2 V.damsela3 NCIMB 2184 = CIP 102761 = CDC 2588-80 = ATCC 33539 (T) biol_source= damsel fish (Chromis punctipinnis) NB: former name Listonella -> Vibrio -> Photobacterium damsela BASE COUNT 164 a 142 c 215 g 139 t 3716 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCNUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGC- A-A--AUU-G C-CCUG---A -UGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AANGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.diazotr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio diazotrophicus str. NS ATCC 33466. ACCESSION No information KEYWORDS No information. SOURCE Vibrio diazotrophicus str. NS ATCC 33466. ORGANISM Vibrio diazotrophicus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33466 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11299 ATCC 33466 = CIP 103191 (T) isolate_name= NS BASE COUNT 164 a 132 c 187 g 122 t 3771 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ...UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUKG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCY-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CACC-AU-YN 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAC ---------G 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UBAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-NN---- ---------- 1681 -(-UU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS.(.AA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......G-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- GA-ACU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.diazotr3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio diazotrophicus str. NS CIP 103191 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio diazotrophicus str. NS CIP 103191 (T). ORGANISM Vibrio diazotrophicus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103191 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74701 CIP 103191 (T) = ATCC 33466 isolate_name= NS BASE COUNT 369 a 321 c 462 g 301 t 2923 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -N-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- GA-ACU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-VU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.diazotro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio diazotrophicus str. NS ATCC 33466. ACCESSION No information KEYWORDS No information. SOURCE Vibrio diazotrophicus str. NS ATCC 33466. ORGANISM Vibrio diazotrophicus. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33466 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56577 Ref 1: paper has cc # as ATCC 14126 ATCC 33466 = CIP 103191 (T) isolate_name= NS BASE COUNT 373 a 317 c 468 g 303 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GG-CUGGG- A-A--CUU-G C-CCUG---A -GGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----GAAA-- ---GAGGGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| --CUCU--G- G--CGU---- 661 ----CAGG-- AUG---G-|G CCUAG----- -UU|----GG G--AUUA-G- CUN-G---UU 721 GG-UG-NG-( GU-AAA-GG) -C-UCACG-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUN-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CNN 1981 -NNC-G--(- GAGA-)-CGC -N-NGNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- GA-ACU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UG-C- A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.metschn3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio metschnikovii str. M 34 NCTC 8443 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio metschnikovii str. M 34 NCTC 8443 (T). ORGANISM Vibrio metschnikovii. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 8443 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11307 Former RDP Sids: V.metschni NCTC 8443 (T) = ICPB 3551 isolate_name= M 34 NB: NCBI says species is metschnitovii ATCC, NCTC and Bacterial Nomenclature say species is metschnikovii BASE COUNT 159 a 131 c 197 g 123 t 3766 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CRCAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCYA UGCC-GC-GU 961 G-U-AU-G-R A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GK-GAG-- GA-K-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCNG- -YYYYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- GA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.metschni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio metschnikovii str. MV 2484 NCTC 11170. ACCESSION No information KEYWORDS No information. SOURCE Vibrio metschnikovii str. MV 2484 NCTC 11170. ORGANISM Vibrio metschnikovii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11170 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74711 NCTC 11170 = ICPB 4076 isolate_name= MV 2484 NB: NCBI says species is metschnitovii ATCC, NCTC and Bacterial Nomenclature say species is metschnikovii BASE COUNT 359 a 316 c 463 g 304 t 2934 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- -------G-C CC-U--U-G- ---UUU-(-- --------AU 541 AA-U------ -)-GAA---- CA-GG----G AC--CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AGU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -GA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- GA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.metschn2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio metschnikovii. ACCESSION No information KEYWORDS No information. SOURCE Vibrio metschnikovii. ORGANISM Vibrio metschnikovii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74712 NB: NCBI says species is metschnitovii ATCC, NCTC and Bacterial Nomenclature say species is metschnikovii BASE COUNT 362 a 320 c 470 g 306 t 2918 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AGU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -GA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- GA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAN -NNA-G-CAG 3121 G-UAG-U-UU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cincnati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cincinnatiensis. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cincinnatiensis. ORGANISM Vibrio cincinnatiensis. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74698 BASE COUNT 360 a 324 c 470 g 300 t 2922 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UNCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UG 1021 --GU-GAG-- GA-A-GG-GA --GUG-UGG( U----UAAUA -----G---) CCAU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AGU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -CG-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -UGC-G--(- GAGA-)-CGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.gazogene 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio gazogenes str. PB 1 CIP 103173 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio gazogenes str. PB 1 CIP 103173 (T). ORGANISM Vibrio gazogenes. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103173 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74705 CIP 103173 (T) = ATCC 29988 (T) isolate_name= PB 1 isolate_name= PB1 BASE COUNT 369 a 314 c 452 g 302 t 2939 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CGGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-AU --AUA-GCU( U----UAAUA -----G---) AGUU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-AGU- 1321 -UGCA-UUUG A-AAC-UGGG A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----GAG 1981 -ACU-G--(- GAGA-)-CAG -U-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GA--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AANN -NNN-G-CAG 3121 G-UAN-U-NN -AA-CCU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.gazogen2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio gazogenes str. PB 1 ATCC 29988 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio gazogenes str. PB 1 ATCC 29988 (T). ORGANISM Vibrio gazogenes. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29988 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11302 ATCC 29988 (T) = CIP 103173 (T) isolate_name= PB 1 isolate_name= PB1 BASE COUNT 148 a 112 c 166 g 116 t 3834 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .AG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CU 1021 --GU-GAG-- GA-A-GG-AU --AUA-GCU( U----UAAUA -----G---) AGUU-AU-UU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAG-A UC-UNAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CYYYCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA.... ...C-(KAA- ---C)G-CG- UUAA-GUAGA C|N|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GY-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGY-W-G-C- SA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnific 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE sequences Towards a phylogeny of the genus Vibrio based on 16S rRNA JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56582 Ref 1: paper has cc # as ATCC 14126 ATCC 27562 = CIP 75.04 (T) BASE COUNT 369 a 325 c 467 g 304 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----UAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-NN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUA-GUG( U----UAAUA -----G---) CACU-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G AGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUU-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CG-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 UAGC-G--(- GAGA-)-CGC ---GNNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACA-A(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-C- A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnifiT 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74726 CIP 75.04 (T) = ATCC 27562 BASE COUNT 370 a 325 c 468 g 302 t 2911 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUA-GUG( U----UAAUA -----G---) CACU-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-C- A-C....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnifi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Aznar,R., Ludwig,W., Amann,R.I. and Schleifer,K.H. TITLE species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes Sequence determination of rRNA genes of pathogenic Vibrio JOURNAL Int. J. Syst. Bacteriol. 44, 330-337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76333|g531552 ATCC 27562 = CIP 75.04 (T) BASE COUNT 381 a 342 c 491 g 320 t 2842 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --GUA-GUG( U----UAAUA -----G---) CACU-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnifi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. TITLE Ribosomal DNA Probes for Vibrio Species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10862|g606859 ATCC 27562 = CIP 75.04 (T) BASE COUNT 236 a 208 c 288 g 197 t 3447 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGNC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGS- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G N-U---CG-U |NU-U(-GUG A)-AAUGU-U 2221 GG-G-(WUAA -GU)-CCCGC AA-------- CGAG-C--NC AACCC-UU-A |-UC--CUU- 2281 GU--UUNC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-RC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAN-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-CC A-CUUU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnifi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus str. C7184. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus str. C7184. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Aznar,R., Ludwig,W., Amann,R.I. and Schleifer,K.H. TITLE Sequence determination of rRNA genes of pathogenic Vibrio species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes JOURNAL Int. J. Syst. Bacteriol. 44, 330-337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76334|g531553 isolate_name= C7184 BASE COUNT 380 a 344 c 494 g 316 t 2842 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-UG --GUG-UCG( U----UAAUA -----G---) CGGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.vulnifi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio vulnificus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio vulnificus. ORGANISM Vibrio vulnificus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74727 BASE COUNT 360 a 323 c 466 g 293 t 2934 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-UG --GUG-UCG( U----UAAUA -----G---) CGGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----NCN 1981 -AGC-G--(- GAGA-)-CGC -N-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-NNNN -NNA-N-UNG 3121 G-NNN-U-NN -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.navarren 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio navarrensis. ACCESSION No information KEYWORDS No information. SOURCE Vibrio navarrensis. ORGANISM Vibrio navarrensis. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74715 BASE COUNT 340 a 298 c 432 g 277 t 3029 others ORIGIN 1 .......... .......... .......... .....ANUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AC-UU 1021 --CU-GAG-- GA-A-GG-UG --GUG-UUG( U----UAAUA -----G---) CAGC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-AACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -N-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 G......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.mimicus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio mimicus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio mimicus. ORGANISM Vibrio mimicus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74713 CIP 101888 (T) = ATCC 33653 (T) BASE COUNT 378 a 321 c 458 g 299 t 2920 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-AC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GUC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.choler14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae.. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. TITLE Ribosomal DNA Probes for Vibrio Species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10955|g606871 BASE COUNT 235 a 209 c 282 g 198 t 3452 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GKUU-C-- 1201 AAR-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-WAA-GC-C CU-GGG-C(- UC-A)AACCU -AG-G-AAU- 1321 -CGCA-UUUG N-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)RCGC- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UAC---CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGW C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUSCRA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|K-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(KUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---R(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|R 2701 G-AA-CU-C- C-AGG-GA-G A-CU-N-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-RCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GRRU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GWU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGN- CU-GC-AAAA -G-A-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C A-CU-UG-CC A-CUGU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.choler13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Bennison,B.W., Reeves,R.H. and LaRock,P.A. TITLE Ribosomal DNA Probes for Vibrio Species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10953|g606870 BASE COUNT 235 a 210 c 274 g 199 t 3458 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-KUUK-C-- 1201 AAN-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CRG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG W-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)NCGC- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G WC----CAC- S-CC-GU--A 1621 AAC-G-AUGU C--UA-CW-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GUC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)R-CG- UUAA-GUAGA C|C|R-CCU- G-GGGAGUAC 1801 GKU-C---(R CGA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -ACN-G--(- GAGA-)-CAC -U-GGUG--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 -U-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CN-U |GU-U(-GUG A)-AAUGU-U 2221 GG-N-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACR AUGGC-G-UA -UA--CAGAG GSC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UG-CC A-CUCU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.choler12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Aznar,R., Ludwig,W., Amann,R.I. and Schleifer,K.H. TITLE Sequence determination of rRNA genes of pathogenic Vibrio species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes JOURNAL Int. J. Syst. Bacteriol. 44, 330-337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76337|g531549 BASE COUNT 392 a 341 c 485 g 318 t 2840 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GAAUAC-C(G 2881 CGAA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UG-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholerae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. 726. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. 726. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Coelho,A., Salles,C.A., Momen,H. and Vicente,A.C. TITLE Sequence of a region of Vibrio cholerae 16S rDNA JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L05178 geog_source= Brazil biol_source= 1991 cholera outbreak isolate_name= 726 BASE COUNT 66 a 59 c 90 g 48 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG..|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. 1062 INSERM U303. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. 1062 INSERM U303. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74695 INSERM U303 = NCTC 8457 = ATCC 14033 legacy_attribute= biovar:biotype Eltor, type inaba isolate_name= 1062 BASE COUNT 377 a 323 c 459 g 299 t 2918 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GNC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-NC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. 1094 CIP 62.13 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. 1094 CIP 62.13 (T). ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 62 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74694 CIP 62.13 (T) = NCTC 8021 = ATCC 14035 (T) legacy_attribute= biovar:biotype eltor; serovar O1 isolate_name= 1094 isolate_name= asiaticus BASE COUNT 377 a 327 c 458 g 300 t 2914 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GUC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAN 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UN-CC C......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. non O_1 Nanking 32/123 CIP 63.40. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. non O_1 Nanking 32/123 CIP 63.40. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 63 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74696 CIP 63.40 = NCTC 4711 = ATCC 14730 isolate_name= non O_1 Nanking 32/123 NB: ATCC lists 14730 as Vibrio sp. (Cholera group) BASE COUNT 377 a 322 c 458 g 299 t 2920 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CNUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GNN -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAN 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UN-CC C......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. non O_1 El Tor 34-D23 CIP 63.41. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. non O_1 El Tor 34-D23 CIP 63.41. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 63 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74697 CIP 63.41 = NCTC 4715 = ATCC 14731 isolate_name= non O_1 El Tor 34-D23 NB: ATCC lists 14731 as Vibrio sp. (Cholera group) BASE COUNT 375 a 317 c 448 g 295 t 2941 others ORIGIN 1 .......... .......... .......... .....AUUGA ANAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CNUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( N----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GNN -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -ANA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCNCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-NAN-U-UU -AA-NC---- ---------- ---------- -----(---- -UUCN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. 1094 ATCC 14035 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. 1094 ATCC 14035 (T). ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to Vibrios JOURNAL Nature 363, 154-156 (1993) STANDARD No information REFERENCE 2 AUTHORS Muarina-Brunker,J.A. and Rosson,R.A. TITLE Partial sequence of Vibrio cholerae ATCC14035 16S rDNA JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14035 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21856 ATCC 14035 (T) = NCTC 8021 = CIP 62.13 (T) isolate_name= 1094 isolate_name= asiaticus BASE COUNT 372 a 323 c 458 g 299 t 2924 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----CCGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAU- 1321 -CGCA-UUUG A-AAC-UGAC A-AGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---C-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -AGC-G--(- GAGA-)-CGC -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. IID936. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. IID936. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11293 isolate_name= IID936 BASE COUNT 160 a 126 c 177 g 124 t 3789 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UWCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-WN-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAYA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-K-GC(-K AA-G)GCGG- -YYYYCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... ....GUC-AU CAU-G-UC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A---C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. IID467. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. IID467. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11294 isolate_name= IID467 BASE COUNT 168 a 134 c 186 g 128 t 3760 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UKA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCG..... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCKG- 1441 -U-K-GC(-K AA-G)GCKG- -CCCCCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----RGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUR -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGK-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-C-G- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.mimicus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio mimicus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio mimicus. ORGANISM Vibrio mimicus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11308 BASE COUNT 168 a 132 c 188 g 129 t 3759 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -UGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-AC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GUN -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGY-A-C-G- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.choler11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. IID934. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. IID934. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11297 isolate_name= IID934 BASE COUNT 135 a 103 c 151 g 107 t 3880 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(...G)--G GAG-KC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCY-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... ....CA-CUC AG-A------ -------UG- C-KWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 YG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGY-A-C-G- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.cholera9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. IID1655. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. IID1655. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11295 isolate_name= IID1655 BASE COUNT 141 a 111 c 155 g 112 t 3857 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(...G)--G GAG-KC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UKA UGCA|-GCKA UGCU-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( Y----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. AA-G)GCUN- -CCCCCUU-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-R------ -------UG- C-KWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGY-A-C-G- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.choler10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio cholerae str. IID935. ACCESSION No information KEYWORDS No information. SOURCE Vibrio cholerae str. IID935. ORGANISM Vibrio cholerae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11296 isolate_name= IID935 BASE COUNT 130 a 98 c 146 g 104 t 3898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(...G)--G GAG-KC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCKA UGCH-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --GUU-AAG( U----UAAUA -----C---) CUUA-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... ...GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGY-A-C-G- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.D.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.13.3 V.AESTUARIANUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.13.3 V.AESTUARIANUS_ASSEMBLAGE. ORGANISM 2.14.3.13.3 V.AESTUARIANUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.aestuar3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio aestuarianus str. OY-0-002 CIP 102971 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio aestuarianus str. OY-0-002 CIP 102971 (T). ORGANISM Vibrio aestuarianus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 102971 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74689 CIP 102971 (T) = ATCC 35048 (T) isolate_name= OY-0-002 BASE COUNT 358 a 318 c 452 g 294 t 2954 others ORIGIN 1 .......... .......... .......... ......UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUCAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-NC- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC G-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GNA-(UC -AGA-AU)-G CCA-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.aestuari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio aestuarianus str. OY-0-002 ATCC 35048 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio aestuarianus str. OY-0-002 ATCC 35048 (T). ORGANISM Vibrio aestuarianus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35048 (T) ATCC 35048 (T) = CIP 102971 (T) isolate_name= OY-0-002 BASE COUNT 373 a 325 c 468 g 307 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUCAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGN-- NUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-NAC- 1321 -UGCA-UUUG A-AAC-UGGC G-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- NCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-N-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CU-CA-CC A-CUUN-GUG GUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.aestuar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio aestuarianus str. OY-0-002 ATCC 35048 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio aestuarianus str. OY-0-002 ATCC 35048 (T). ORGANISM Vibrio aestuarianus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35048 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11289 ATCC 35048 (T) = CIP 102971 (T) isolate_name= OY-0-002 BASE COUNT 160 a 134 c 187 g 119 t 3776 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....).GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UNAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .G-ACG--UC -A-AGUC-AU CAU-N-NC-C CUUNC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-G(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.scophtha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio scophthalmi str. A089 CECT 4638 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio scophthalmi str. A089 CECT 4638 (T). ORGANISM Vibrio scophthalmi. REFERENCE 1 AUTHORS Cerda-Cuellar,M., Rossello-Mora,R.A., Lalucat,J., Jofre,J. and Blanch,A. TITLE Vibrio scophthalmi sp. nov., a new species from turbot (Scophthalmus maximus) JOURNAL Int. J. Syst. Bacteriol. 47 (1), 58-61 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U46579|g1184961 specific_host= Scophthalmus maximus isolate_name= A089 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 376 a 332 c 473 g 314 t 2881 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU---U---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----U--G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUU---A-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUU-GCG( U----UAAUA -----G---) CGUA-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-CGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- CA-ACC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-A-C G-CU-CA-CC A-CUUU-GUG -UU-CA-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.natrieg2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio natriegens str. 111 CCM 2575. ACCESSION No information KEYWORDS No information. SOURCE Vibrio natriegens str. 111 CCM 2575. ORGANISM Vibrio natriegens. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: CCM 2575 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11309 CCM 2575 = CIP 75.07 = DSM 759 = NCIMB 857 = ATCC 14048 (T) = CIP 103193 (T) isolate_name= 111 BASE COUNT 164 a 134 c 190 g 119 t 3769 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -WGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCYA UGCH-GH-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU NAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GAU-GCG( U----UAAUA -----G---) CGKA-AA-GA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCDG- 1441 -U-G-GC(-K AA-G)GCGG- -CCCCCUK-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71821|g967099 Former RDP Sids: V.anguill9 biol_source= turbot (Scophthalmus maximus), no typeable serotype NB: former name Vibrio anguillarum BASE COUNT 385 a 323 c 458 g 310 t 2900 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CACUA UCGA------ ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAU UUAAUG--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-GG --GUA-ACG( U----UAAUA -----G---) CGUU-AU-CU 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 AC--NG---- --NN-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AC 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GNGAGG-A-C G-CU-CA-CC A-CUUU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.splendid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio splendidus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio splendidus. ORGANISM Vibrio splendidus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74724 CIP 102893 (T) = ATCC 33125 (T) BASE COUNT 377 a 317 c 459 g 302 t 2921 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CACUA A--------- ---------- ---------- ---------- 181 ---------- ---------- ----CAA-UC (--CU----- ---------- ---------- 241 --------UC -)GG-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------NN UUAAUG--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-GG --GUA-NCG( U----UAAUA -----G---) CGNN-AU-CU 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 N-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AAA-(UC -NGA-AU)-G UCA-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCUC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GN-AAAA -GAA-G-UAG 3121 N-UAG-U-UU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71828|g967105 Former RDP Sids: V.anguil16 biol_source= turbot (Scophthalmus maximus), no typeable serotype NB: former name Vibrio anguillarum BASE COUNT 148 a 117 c 172 g 120 t 3819 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CACUA A--------- ---------- ---------- ---------- 181 ---------- ---------- ----CAA-UC (--CU----- ---------- ---------- 241 --------UC -)GG-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------CG UUAAUG--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-GG --GUA-ACG( U----UAAUA -----G---) CGUU-AU-CU 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .........G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.splendi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio splendidus str. SCB8. ACCESSION No information KEYWORDS No information. SOURCE Vibrio splendidus str. SCB8. ORGANISM Vibrio splendidus. REFERENCE 1 AUTHORS Rehnstam-Holm,A., Backman,S., Azam,F. and Hagstrom,A. TITLE Specificity of 16S rRNA probes for the detection of heterotrophic bacteria in the sea JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z31657|g468767 isolate_name= SCB8 BASE COUNT 384 a 330 c 473 g 310 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CACUA A--------- ---------- ---------- ---------- 181 ---------- ---------- ----CAA-UY (--CU----- ---------- ---------- 241 --------UC -)GG-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------CG UUAAUG--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-GG --GUA-ACG( U----UAAUA -----G---) CGUU-AC-CU 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGCG |-GGGG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-G-GC- AU--CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GG- UK-GGG-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 G-U-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-S-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAAGCC-U.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.angu_8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella anguillarum. ACCESSION No information KEYWORDS No information. SOURCE Listonella anguillarum. ORGANISM Listonella anguillarum. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71820|g967107 Former RDP Sids: V.anguill8 biol_source= turbot (Scophthalmus maximus), no typeable serotype NB: former name Vibrio anguillarum BASE COUNT 147 a 117 c 174 g 121 t 3817 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CACUA A--------- ---------- ---------- ---------- 181 ---------- ---------- ----CAA-UC (--CU----- ---------- ---------- 241 --------UC -)GG-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------CG UUAAUG--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---UGC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GU-GAG-- GA-A-GG-GU --GUG-UAG( U----UAAUA -----C---) GUGC-GC-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.mediterr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio mediterranei. ACCESSION No information KEYWORDS No information. SOURCE Vibrio mediterranei. ORGANISM Vibrio mediterranei. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74710 BASE COUNT 367 a 329 c 472 g 299 t 2909 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---GUUAA CUGAC----- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UAAC GUUAAC--G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCG A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-CG --GGU-ACG( U----UAAUA -----G---) CGUG-CU-CN 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC G-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -AGC-G--(- GAGA-)-CGC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AN-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-U G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Krptal 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19003 symbiont_of= Kryptophanaron alfredi BASE COUNT 371 a 300 c 444 g 314 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC--GC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---UAUUA AC-------- ---------- ---------- ---------- 181 ---------- ---------- -----AC-UC (--UU----- ---------- ---------- 241 --------UG -)GA-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------UCG UUAAUA--G- GUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--GUU-G C-CAGU---A -GAGG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CU---- 601 --(------- ---UUUG--- ---)------ -----AG--| -CCUUG--U- G--CCU---- 661 ----ACUGG- AUA---C-|G CCUAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-UG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -U-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(......G --)GG--UGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-GG --GUA-UAU( U----UAAUA -----C---) GUAU-AU-UU 1081 ---------- -------C-U U-GA-CGUU- A-GCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GU -G|-GU-UC- 1261 A-AU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU G-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 AUA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-AG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -AGU-G--(- GAGA-)-CAC -U-GGCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CUG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UA -UA--CAGAG GGU-U-A-C- CA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GUGAA-U CCCCC-AAAG -UA-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Anlpka 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19081 symbiont_of= Anomalops katoptron BASE COUNT 392 a 305 c 436 g 328 t 2915 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C AA---CAGCU AU-------- ---------- ---------- ---------- 181 ---------- ---------- --UCCUU-UU (--UU----- ---------- ---------- 241 --------U- -)AA-AAGGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAAUUG--G- UUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--GUU-G C-CCAG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----AAAA-- ---GCAGGG- GA--CCU--- 601 --(------- ---UUUAU-- ---)------ ----AGG--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUA---C-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GA-UA ---UG-CAU( C----UAAUA -----C---) AUGU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-ACU-G-CA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GU -G|-GU-UC- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUA A-AAC-UGUC A-GACUA-GA GUA-----CU A-UA-GAGGG GGG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCCCCUG-- ---------- ---------- ---------G 1501 AUA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -GUAGC-UUU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GCC 1981 -AG--A--(- GAGA-)-UAC -A-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- C-AAG-GA-G A-CU-G-CCG --GU(-GA-G AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UA -UA--CAAAG GGU-U-G-C- CA-ACC-A(G 2881 -UAA)UGGU- ---------- AA-GCUAA-U CCCCU-AAAG -UA-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-GC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CU---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Pblpp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19079 symbiont_of= Photoblepharon palpebratus BASE COUNT 327 a 265 c 400 g 270 t 3114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)....GGAU GGGUUG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCGG---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GAAU--- ---)------ -----GG--| -CCUUG--U- G--CUA---- 661 ----UUGG-- AUA---U-|G CCUAG----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGUC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AA-CA 1021 --GU-GAG-- GA-A-GG-AU --GUA-UGC( U----UAAUA -----C---) GUAU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUC G-AGCNN-GA GUA-----CU G-UA-GAGG. .....|.... 1381 .......... .......(.. .....).... .......... .......... ......CGG- 1441 -U-G-GC(-G AA-G)NNGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GCC 1981 -AGU-G--(- GAGA-)-CAU -C-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .U--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---GCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGU-U-G-C- AA-ACU-A(G 2881 -CGA)UAGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AG)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-G... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Pblpst 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19080 symbiont_of= Photoblepharon steinetzi BASE COUNT 362 a 290 c 432 g 306 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..C--G ACUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--GUU-G C-CCAA---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------CU 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GAAU--- ---)------ -----GG--| -CCUUG--G- G--CUA---- 661 ----UUGG-- AUA---U-|G CCUAG----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCCA UGUC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AA-CA 1021 --GU-AAG-- GA-A-GG-AU --GUG-UGC( U----UAAUA -----C---) GUAU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUA G-AGCUG-GA GUA-----CU G-UA-GAGGG GGG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GCC 1981 -AGU-G--(- GAGA-)-CAU -U-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-CA -UA--CAGAG GGU-U-G-C- AA-ACU-A(G 2881 -CGA)UGGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CU---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-CA-CC A-CUUU-GUG GUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Pblpp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19085 symbiont_of= Photoblepharon palpebratus BASE COUNT 373 a 292 c 439 g 312 t 2960 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA---CAACA CUGAA----- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------UG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAU GGGUUG--G- GUG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--GUU-G C-CCAA---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------CU 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---GAAU--- ---)------ -----GG--| -CCUUG--C- G--CUA---- 661 ----UUGG-- AUA---U-|G CCUAG----- -GU|----GA G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGUC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AA-CA 1021 --GU-AAG-- GA-A-GG-AU --GUA-UGC( U----UAAUA -----C---) GUAU-AU-AU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUA G-AGCUG-GA GUA-----CU G-UA-GAGGG GGG-U|GGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(UUU-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GCC 1981 -AGU-G--(- GAGA-)-CAU -U-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-U- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-CA -UA--CAGAG GGU-U-G-C- AA-ACU-A(G 2881 -CGA)UGGU- ---------- AA-GCGAA-U CCCAA-AAAG -UG-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC U......... 3061 .......... .......... .......... .......... .......... .......... 3121 ...AG-U-UU -AA-CU---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-CA-A. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.D.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.13.4 V.FISCHERI_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.13.4 V.FISCHERI_ASSEMBLAGE. ORGANISM 2.14.3.13.4 V.FISCHERI_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.furnissi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio furnissii. ACCESSION No information KEYWORDS No information. SOURCE Vibrio furnissii. ORGANISM Vibrio furnissii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74704 Former RDP Sids: V.furnisii CIP 102972 (T) = ATCC 35016 (T) BASE COUNT 358 a 318 c 459 g 300 t 2941 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAA CAUUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAUU UGUUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-GG --AUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.furniss2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio furnissii. ACCESSION No information KEYWORDS No information. SOURCE Vibrio furnissii. ORGANISM Vibrio furnissii. REFERENCE 1 AUTHORS Aznar,R., Ludwig,W., Amann,R.I. and Schleifer,K.H. TITLE Sequence determination of rRNA genes of pathogenic Vibrio species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes JOURNAL Int. J. Syst. Bacteriol. 44, 330-337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76336|g531551 Former RDP Sids: V.furnisi2 ATCC 35016 (T) = CIP 102972 (T) BASE COUNT 382 a 342 c 494 g 326 t 2832 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAA CAUUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAUU UGUUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-GG --AUA-UCG( U----UAAUA -----G---) CGGU-AU-UC 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UG-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.pelagi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella pelagia. ACCESSION No information KEYWORDS No information. SOURCE Listonella pelagia. ORGANISM Listonella pelagia. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11278 ATCC 25916 = CIP 102762 (T) = NCTC 11316 = CIP 75.06 = CCUG 16398 = NCIMB 1900 (T) biol_source= seawater BASE COUNT 156 a 137 c 185 g 124 t 3774 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CWCAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CN 1021 --GU-GAG-- GU-A-GG-GG --GUG-UCG( U----UAAUA -----G---) CGGC-AU-UU 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCKK- -CCYYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GY---- ---------- 1681 -(CUU-NW)- ---------- ---------- ---------- -------UCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- U-GGGCGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fluvial3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fluvialis str. VL 5125 NCTC 11327 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio fluvialis str. VL 5125 NCTC 11327 (T). ORGANISM Vibrio fluvialis. REFERENCE 1 AUTHORS Aznar,R., Ludwig,W., Amann,R.I. and Schleifer,K.H. TITLE Sequence determination of rRNA genes of pathogenic Vibrio species and whole-cell identification of Vibrio vulnificus with rRNA-targeted oligonucleotide probes JOURNAL Int. J. Syst. Bacteriol. 44, 330-337 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11327 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76335|g531550 NCTC 11327 (T) = ATCC 33809 (T) = NCIMB 2249 isolate_name= VL 5125 NB: Sequences appear not to match; release both BASE COUNT 381 a 340 c 490 g 324 t 2841 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAGAGA-AA (--CU----- ---------- ---------- 241 --------UG -)UU-UCUC- G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-AG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-CU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-CAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-UG-CC A-CUUU-GUG GUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCGC-UAG G(GGA-A)CC UGGCGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fluviali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fluvialis str. VL 5125 NCIMB 2249. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fluvialis str. VL 5125 NCIMB 2249. ORGANISM Vibrio fluvialis. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74703 NCIMB 2249 = NCTC 11327 (T) = ATCC 33809 (T) legacy_attribute= biovar:biovar 1, group F isolate_name= VL 5125 NB: Sequences appear not to match; release both BASE COUNT 368 a 318 c 461 g 305 t 2924 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CAA CAUUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAUU UGUUG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-AG --GUA-UCG( U----UAAUA -----G---) CGGU-AU-CU 1081 ---------- -------U-U U-GA-CNUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -NAA-G-CAG 3121 G-UAN-U-UU -AA-C..... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.ordalii2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio ordalii. ACCESSION No information KEYWORDS No information. SOURCE Vibrio ordalii. ORGANISM Vibrio ordalii. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11312 BASE COUNT 166 a 135 c 196 g 123 t 3756 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-GG --GAU-GCG( U----UAAUA -----G---) CGUA-UU-CG 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CBBBCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.nereis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio nereis. ACCESSION No information KEYWORDS No information. SOURCE Vibrio nereis. ORGANISM Vibrio nereis. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74716 CIP 103194 (T) = ATCC 25917 (T) BASE COUNT 364 a 316 c 449 g 298 t 2949 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UN --GNU-GCG( U----UAAUA -----G---) CGUA-UU-AA 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-CACUA-GA GUA-----CU G-UA-GAGGG NGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UNG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -UNA-AU)-G CCA-CGGUG- AAUNN-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.tubiashi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio tubiashii. ACCESSION No information KEYWORDS No information. SOURCE Vibrio tubiashii. ORGANISM Vibrio tubiashii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74725 CIP 102760 (T) = ATCC 19109 (T) BASE COUNT 360 a 318 c 454 g 297 t 2947 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-NU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UG --GUA-GNG( U----UAAUA -----G---) CACU-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GNCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-NGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -NGA-AU)-G CCA-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.salmoni3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio salmonicida. ACCESSION No information KEYWORDS No information. SOURCE Vibrio salmonicida. ORGANISM Vibrio salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70639|g1022368 biol_source= Atlantic salmon (Salmo salar) BASE COUNT 141 a 110 c 165 g 123 t 3837 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC.(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-CAG( U----UAAUA -----G---) CUGU-AC-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.salmoni2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio salmonicida. ACCESSION No information KEYWORDS No information. SOURCE Vibrio salmonicida. ORGANISM Vibrio salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70638|g1022369 biol_source= cod (Gadus morhua) BASE COUNT 148 a 107 c 166 g 128 t 3827 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GU..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCN-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-CAG( U----UAAUA -----G---) CUGU-AC-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.salmoni4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio salmonicida. ACCESSION No information KEYWORDS No information. SOURCE Vibrio salmonicida. ORGANISM Vibrio salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70643|g1022370 biol_source= Atlantic salmon (Salmo salar) BASE COUNT 381 a 318 c 459 g 312 t 2906 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-CAG( U----UAAUA -----G---) CUGU-AC-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-N-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GG- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 NN-NNAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-N -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CG UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-C G-CU-CA-CC A-CUUU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.salmonH1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio salmonicida str. halibut. ACCESSION No information KEYWORDS No information. SOURCE Vibrio salmonicida str. halibut. ORGANISM Vibrio salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71811|g967119 legacy_attribute= biovar:H1 651 biol_source= halibut (Hippoglossus hippoglossus) isolate_name= halibut BASE COUNT 360 a 290 c 416 g 291 t 3019 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---G... 901 ......UAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-CAG( U----UAAUA -----G---) CUGU-AC-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACNA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.salmoni5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio salmonicida str. PT2. ACCESSION No information KEYWORDS No information. SOURCE Vibrio salmonicida str. PT2. ORGANISM Vibrio salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information REFERENCE 2 AUTHORS Onarheim,A.M., Wiik,R., Burghardt,J. and Stackbrandt,E. TITLE Characterization and identification of two Vibrio species indigenous to the intestine of fish in cold sea water; description of Vibrio iliopiscarius sp. nov. JOURNAL Syst. Appl. Microbiol. 17, 370-379 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70637|g1022372 biol_source= cod (Gadus morhua) isolate_name= PT2 BASE COUNT 147 a 108 c 165 g 129 t 3827 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GU..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-CAG( U----UAAUA -----G---) CUGC-AU-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUNU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.logei3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio logei str. PS207 (R.R. Colwell) CIP 103204 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio logei str. PS207 (R.R. Colwell) CIP 103204 (T). ORGANISM Vibrio logei. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103204 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74708 CIP 103204 (T) = NCIMB 1143 = ATCC 15382 isolate_name= PS207 (R.R. Colwell) isolate_name= PS207 (R.R.Colwell) NB: not the (T) strain BASE COUNT 376 a 315 c 452 g 309 t 2924 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAANU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ANUUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUG---A -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCU--C- G--CGU---- 661 ----CAAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-NU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-NG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-UAG( U----UAAUA -----G---) CUGC-AU-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-NC...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.logei2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio logei str. PS207 (R.R. Colwell) ATCC 15382. ACCESSION No information KEYWORDS No information. SOURCE Vibrio logei str. PS207 (R.R. Colwell) ATCC 15382. ORGANISM Vibrio logei. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15382 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11305 ATCC 15382 = NCIMB 1143 = CIP 103204 (T) isolate_name= PS207 (R.R. Colwell) isolate_name= PS207 (R.R.Colwell) BASE COUNT 132 a 111 c 162 g 110 t 3861 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUN-NG-UC 1021 --GU-GAG-- GU-U-GG-GU --GUG-UAG( U----UAAUA -----G---) CUGC-AU-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......GG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -YYYYCUK-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----KGUA-G UC----CWC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GYC -GUGGC-UUU 1741 CG--GA---- --SS-(UNA- ---C)G-CG- UUAA-GUAGN C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fischer3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fischeri. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fischeri. ORGANISM Vibrio fischeri. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71813|g967116 biol_source= merluza (Merluccius vulgaris) BASE COUNT 143 a 108 c 163 g 127 t 3835 others ORIGIN 1 .......... .......... .......... ..UUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUNU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UNU-G C-CUUN---G -UGUG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GC..(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ...A)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 NNG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-GU --GUG-UAG( U----UAAUA -----G---) CUGC-AN-AU 1081 ---------- -------C-U U-GA-CGUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fischeri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fischeri. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fischeri. ORGANISM Vibrio fischeri. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74702 NCIMB 1281 = ATCC 7744 (T) biol_source= seawater BASE COUNT 381 a 317 c 456 g 307 t 2915 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUA---G -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGC---- 661 ----UAAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --UUG-UAG( U----UAAUA -----G---) CUGC-AG-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAN -GAA-G-UGN 3121 G-NAG-N-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fischer4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fischeri. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fischeri. ORGANISM Vibrio fischeri. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70640|g1022363 NCIMB 1281 = ATCC 7744 (T) biol_source= seawater BASE COUNT 386 a 321 c 450 g 312 t 2907 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUA---G -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGC---- 661 ----UAAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --AG-GAG-- GA-A-GG-UG --UUG-UAG( U----UAAUA -----G---) CUGC-AG-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACNA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-C AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUU 1741 AC--NG---- --NC-(UNA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AC 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAN-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CCU--- ---------- ---------- -----(---- -NNNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GNGAGG-A-C G-CU-CA-CC A-CUUU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Phb.fische 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photobacterium fischeri str. MJ-1. ACCESSION No information KEYWORDS No information. SOURCE Photobacterium fischeri str. MJ-1. ORGANISM Photobacterium fischeri. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21729 isolate_name= MJ-1 BASE COUNT 333 a 274 c 401 g 271 t 3097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... ........G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--UAU-G C-CUUA---G -UGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA---C---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGC---- 661 ----UNAG-- AUU---A-|G CCCAG----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-UG --CAK-RCG( U----UAAUA -----G---) CGBA-UG-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GNNG-C-- 1201 GNG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGGU G-AACUA-GA GUG-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUU 1741 CG--GA---- --S--(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-U -G----C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUN-AA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AR---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCN-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fischer2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fischeri. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fischeri. ORGANISM Vibrio fischeri. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11300 ATCC 7744 (T) = NCIMB 1281 biol_source= seawater BASE COUNT 141 a 116 c 165 g 112 t 3842 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)..G GAG--C-WG- C-W---NN-N 901 GGG-AAUAUU G-CWCAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-NG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UAG( U----UAAUA -----G---) CUGC-AG-CA 1081 ---------- -------U-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....)..GC -GU-AGAG-A UC-UKCAGG- AAUA-CCWG- 1441 -U-G-GC(-K AA-G)GCKG- -YYYYCUK-- ---------- ---------- ---------G 1501 ACA--GA-CA CUGACA-CUC AG-A------ -------UG- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUWY)-CCU- ----KGUA-G UC----CWC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUN -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......G-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.proteol3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio proteolyticus str. 262 CIP 102892 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio proteolyticus str. 262 CIP 102892 (T). ORGANISM Vibrio proteolyticus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 102892 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74723 CIP 102892 (T) = LMG 3772 = IFO 13287 = DSM 30189 = CIP 710 = ATCC 15338 (T) = CCEB 710 = NCIMB 1326 (T) isolate_name= 262 BASE COUNT 372 a 322 c 467 g 303 t 2912 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAUC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) AUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.proteol2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio proteolyticus str. 262 NCIMB 1326 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio proteolyticus str. 262 NCIMB 1326 (T). ORGANISM Vibrio proteolyticus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11315 NCIMB 1326 (T) = LMG 3772 = IFO 13287 = DSM 30189 = CIP 710 = ATCC 15338 (T) = CIP 102892 (T) = CCEB 710 isolate_name= 262 BASE COUNT 160 a 132 c 191 g 123 t 3770 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -DGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UDU( U----UAAUA -----G---) AUGC-AU-UN 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CYYYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-NN---- ---------- 1681 -(NUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-NNU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUS- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.nigripul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio nigripulchritudo. ACCESSION No information KEYWORDS No information. SOURCE Vibrio nigripulchritudo. ORGANISM Vibrio nigripulchritudo. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74717 CIP 103195 (T) = ATCC 27043 (T) BASE COUNT 357 a 319 c 455 g 297 t 2948 others ORIGIN 1 .......... .......... .......... ......UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU NUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG ACAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-GU --GUG-UAU( U----UAAUA -----G---) AUGC-AC-AN 1081 ---------- -------U-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUN-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -NGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.nigripu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio nigripulchritudo. ACCESSION No information KEYWORDS No information. SOURCE Vibrio nigripulchritudo. ORGANISM Vibrio nigripulchritudo. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11311 ATCC 27043 (T) = CIP 103195 (T) BASE COUNT 159 a 136 c 190 g 123 t 3768 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-VV 1021 --GU-GAG-- GM-A-GG-GU --GUG-AAU( U----UAAUA -----G---) AUGC-AC-AU 1081 ---------- -------U-U U-GA-CGUU- A-GCU-S-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.G UGRAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-SC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUC AG-A------ -------UG- C-GRAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GS-C CMUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(R 2881 -CRA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- M)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUN- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.phaemol2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ORGANISM Vibrio parahaemolyticus. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17802 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56580 Ref 1: paper has cc # as ATCC 14126 Former RDP Sids: V.parahae2 ATCC 17802 (T) = CCUG 15657 = CCUG 14474 = CCTM 2011 = NCIMB 1902 = FIRDI 806 = CIP 75.02 = CECT 511 = CDC 9062.79 = USCC 2240 = RIMD 2210001 = NCTC 10903 = LMG 2850 isolate_name= 113 NB: differs from other version of type strain BASE COUNT 379 a 326 c 466 g 308 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-C- (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AGC-(-- --------UU 541 CG-------- -)-GCU---- ---------- ----UAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUUG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CC 1021 --GU-GAG-- GA-A-GG-UG --GCA-GUG( U----UAAUA -----G---) CACC-AU-CA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G AGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUC-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUACA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGA -U-UGG---- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACA-A(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-UA-C- A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.proteoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio proteolyticus str. 262 ATCC 15338 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio proteolyticus str. 262 ATCC 15338 (T). ORGANISM Vibrio proteolyticus. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15338 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56579 Ref 1: paper has cc # as ATCC 14126 ATCC 15338 (T) = LMG 3772 = IFO 13287 = DSM 30189 = CIP 710 = CIP 102892 (T) = CCEB 710 = NCIMB 1326 (T) isolate_name= 262 BASE COUNT 377 a 329 c 465 g 303 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-C- (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAUC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CC 1021 --GU-GAG-- GA-A-GG-UA --GCG-UAG( U----UAAUA -----G---) AUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-C-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-GU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUUAGA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G AGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUC-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- C-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -N-NGG---- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUNGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACA-A(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UGG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-CU-C- A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.campbel3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio campbellii str. 40 CIP 75.01 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio campbellii str. 40 CIP 75.01 (T). ORGANISM Vibrio campbellii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 75 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74692 CIP 75.01 (T) = CCM 2582 = NCIMB 1894 = ATCC 25920 (T) isolate_name= 40 BASE COUNT 372 a 324 c 466 g 304 t 2910 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.phaemoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ORGANISM Vibrio parahaemolyticus. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17802 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59161 Former RDP Sids: V.parahaem ATCC 17802 (T) = CCUG 15657 = CCUG 14474 = CCTM 2011 = NCIMB 1902 = FIRDI 806 = CIP 75.02 = CECT 511 = CDC 9062.79 = USCC 2240 = RIMD 2210001 = NCTC 10903 = LMG 2850 isolate_name= 113 BASE COUNT 372 a 321 c 461 g 311 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAUUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-C- (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----UAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAUN-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-YG --GGA-RYG( U----UAAUA -----G---) CRYU-UU-CR 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAN |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-N-NAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUN-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCNCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-UA-CC A-CUUU-GUG GUU-CA-NG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.phaemol5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio parahaemolyticus str. 113 CIP 75.02. ACCESSION No information KEYWORDS No information. SOURCE Vibrio parahaemolyticus str. 113 CIP 75.02. ORGANISM Vibrio parahaemolyticus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 75 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74720 CIP 75.02 = CCUG 15657 = CCUG 14474 = CCTM 2011 = NCIMB 1902 = ATCC 17802 (T) = FIRDI 806 = CECT 511 = CDC 9062.79 = USCC 2240 = RIMD 2210001 = NCTC 10903 = LMG 2850 isolate_name= 113 NB: differs from other version of type strain BASE COUNT 375 a 323 c 467 g 303 t 2908 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-NA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-NAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.phaemol4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio parahaemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio parahaemolyticus. ORGANISM Vibrio parahaemolyticus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74721 BASE COUNT 375 a 323 c 467 g 303 t 2908 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-NA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-NAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.alginol2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio alginolyticus str. XII-53 NCIMB 1903 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio alginolyticus str. XII-53 NCIMB 1903 (T). ORGANISM Vibrio alginolyticus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11290 NCIMB 1903 (T) = LMG 4408 = DSM 2171 = CIP 75.03 = ATCC 17749 = CECT 587 = CECT 521 = CDC 9065-79 = CCUG 16315 = CCUG 13445 = CCM 2578 isolate_name= XII-53 BASE COUNT 157 a 136 c 186 g 124 t 3773 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -DGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 UGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UNG( U----UAAUA -----G---) CUSC-AU-YA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ...AA)-UGC -GU-AGAG-A UC-UUCAGG- AAUA-CCGG- 1441 -U-G-CC(-G AA-G)GCGG- -CYYYCUK-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----BGUA-G UC----CDC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(BUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.pelag2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella pelagia. ACCESSION No information KEYWORDS No information. SOURCE Listonella pelagia. ORGANISM Listonella pelagia. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74722 Former RDP Sids: V.pelagius CIP 102762 (T) = ATCC 25916 = NCTC 11316 = CIP 75.06 = CCUG 16398 = NCIMB 1900 (T) biol_source= seawater NB: paper incorrectly lists Lsn.pelag2 as X74720 former name Vibrio pelagius BASE COUNT 372 a 316 c 464 g 304 t 2920 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GNACG UUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UCG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UN -AGA-AU)-G CCA-CGGUG- AAUAN-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCAC- GUC-ACA--- --CCA-UGGG A--GU-GGG- NU-GN-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG....... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.nereis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio nereis. ACCESSION No information KEYWORDS No information. SOURCE Vibrio nereis. ORGANISM Vibrio nereis. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11310 Former RDP Sids: V.nereis ATCC 25917 (T) = CIP 103194 (T) BASE COUNT 154 a 132 c 180 g 120 t 3790 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .........A UC-UGGAGG- AAUA-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -YYYYCUK-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-KGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUWC)-CCU- ----DGUA-G UC----CWC- G-CC-GU--W 1621 AAC-G-AUGU C--UA-CU-- -------U|K -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.phaemol3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio parahaemolyticus str. 113 ATCC 17802 (T). ORGANISM Vibrio parahaemolyticus. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17802 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11314 ATCC 17802 (T) = CCUG 15657 = CCUG 14474 = CCTM 2011 = NCIMB 1902 = FIRDI 806 = CIP 75.02 = CECT 511 = CDC 9062.79 = USCC 2240 = RIMD 2210001 = NCTC 10903 = LMG 2850 isolate_name= 113 BASE COUNT 127 a 104 c 145 g 101 t 3899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... .C(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GY-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-K AA-G)GCGG- -CYYYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .G-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CKA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.natrieg4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio natriegens str. 111 CIP 103193 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio natriegens str. 111 CIP 103193 (T). ORGANISM Vibrio natriegens. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103193 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74714 CIP 103193 (T) = CIP 75.07 = DSM 759 = NCIMB 857 = ATCC 14048 (T) = CCM 2575 isolate_name= 111 BASE COUNT 371 a 322 c 468 g 304 t 2911 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGACG UUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.natriege 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio natriegens str. 111 ATCC 14048 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio natriegens str. 111 ATCC 14048 (T). ORGANISM Vibrio natriegens. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14048 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56581 Ref 1: paper has cc # as ATCC 14126 ATCC 14048 (T) = CIP 75.07 = DSM 759 = NCIMB 857 = CCM 2575 = CIP 103193 (T) isolate_name= 111 BASE COUNT 375 a 319 c 451 g 302 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AAC....-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GC--(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-C---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAC|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-G-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGA-C-A G-CC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lsn.pelag3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listonella pelagia. ACCESSION No information KEYWORDS No information. SOURCE Listonella pelagia. ORGANISM Listonella pelagia. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70642|g1022367 Former RDP Sids: V.pelagi2 NCIMB 1900 (T) = ATCC 25916 = CIP 102762 (T) = NCTC 11316 = CIP 75.06 = CCUG 16398 biol_source= seawater NB: former name Vibrio pelagius BASE COUNT 166 a 140 c 209 g 135 t 3726 others ORIGIN 1 .......... .......... .......... .........A AGAGUU(U-N A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UNGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G---A-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AACUNAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GNACG UUNAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UN--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUN---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UN-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GAG-NNG( U----UAAUA -----G---) CNGN-AN-GA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... ......C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-NNNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.alginol4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio alginolyticus. ACCESSION No information KEYWORDS No information. SOURCE Vibrio alginolyticus. ORGANISM Vibrio alginolyticus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74691 BASE COUNT 378 a 321 c 465 g 302 t 2910 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-NA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.alginol3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio alginolyticus str. XII-53 CIP 75.03. ACCESSION No information KEYWORDS No information. SOURCE Vibrio alginolyticus str. XII-53 CIP 75.03. ORGANISM Vibrio alginolyticus. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 75 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74690 CIP 75.03 = LMG 4408 = DSM 2171 = ATCC 17749 = NCIMB 1903 (T) = CECT 587 = CECT 521 = CDC 9065-79 = CCUG 16315 = CCUG 13445 = CCM 2578 isolate_name= XII-53 BASE COUNT 378 a 321 c 465 g 302 t 2910 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---GCC-(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-NA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.carchar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio carchariae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio carchariae. ORGANISM Vibrio carchariae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11292 BASE COUNT 162 a 138 c 191 g 123 t 3762 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 ........G| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UDA UGCA|-GCCA UGCM-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAC ---------G 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G USAAA)-USC -GU-AGAG-A UC-UGAAGK- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUN-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-K-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.harveyi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio harveyi.. ACCESSION No information KEYWORDS No information. SOURCE Vibrio harveyi. ORGANISM Vibrio harveyi. REFERENCE 1 AUTHORS Rosson,R. and Schmidt,T.M. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58172 BASE COUNT 320 a 272 c 404 g 264 t 3116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ ....C----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGYG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-W--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------NU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---ACU-(-- --------AC 541 GG-------- -)-GY----- ---------- ----CAAA-- ---GAGGGG- GA--NN---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-NAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CN G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --NS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUNC 1801 GGU-C---(G CAA)---G-A UU-AAA-CUC -AWA-UGAAU UG-AY--G-G -G-C-C---- 1861 --A--CA-AG CGGUGG-AGC A-U-GU-GGU -U-AAUU-CG -(AN--AA-C G)--CGAAGA 1921 A-CCU-A-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- Y-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-R-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.fluvial2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio fluvialis str. VL 5125 NCTC 11328. ACCESSION No information KEYWORDS No information. SOURCE Vibrio fluvialis str. VL 5125 NCTC 11328. ORGANISM Vibrio fluvialis. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11328 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11301 NCTC 11328 = ATCC 33908 (T) legacy_attribute= biovar:biovar 1, group F isolate_name= VL 5125 BASE COUNT 141 a 118 c 168 g 113 t 3836 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UKA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --KU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUNC-AU-UN 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCYCUK-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----KGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GY---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -KUGGC-UUU 1741 YG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUWGA C|C|G-CCU- G-GGGWGUAC 1801 GGU-Y---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-R-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.harveyi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio harveyi. ACCESSION No information KEYWORDS No information. SOURCE Vibrio harveyi. ORGANISM Vibrio harveyi. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11303 ATCC 14126 (T) = CIP 103192 (T) BASE COUNT 160 a 139 c 193 g 125 t 3759 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .......UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 UGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UUGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCKG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-KGG-GA- 1561 GC-AAA-CA- -GG(WUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -NUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.carchari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio carchariae. ACCESSION No information KEYWORDS No information. SOURCE Vibrio carchariae. ORGANISM Vibrio carchariae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74693 BASE COUNT 371 a 323 c 464 g 305 t 2913 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-N-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.campbell 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio campbellii str. 40 ATCC 25920 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio campbellii str. 40 ATCC 25920 (T). ORGANISM Vibrio campbellii. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25920 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56575 Ref 1: paper has cc # as ATCC 14126 ATCC 25920 (T) = CCM 2582 = NCIMB 1894 = CIP 75.01 (T) isolate_name= 40 BASE COUNT 384 a 324 c 469 g 307 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCGCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- --------GU UAACUGG-AA (--CU----- ---------- ---------- 241 --------UG -)GG-AACGA UAAC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- -----CUU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GC--(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UAGA)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C AGCC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.alginoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio alginolyticus str. XII-53 ATCC 17749. ACCESSION No information KEYWORDS No information. SOURCE Vibrio alginolyticus str. XII-53 ATCC 17749. ORGANISM Vibrio alginolyticus. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17749 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56576 Ref 1: paper has cc # as ATCC 14126 ATCC 17749 = LMG 4408 = DSM 2171 = CIP 75.03 = NCIMB 1903 (T) = CECT 587 = CECT 521 = CDC 9065-79 = CCUG 16315 = CCUG 13445 = CCM 2578 isolate_name= XII-53 BASE COUNT 384 a 323 c 468 g 307 t 2894 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- --------GU UAACUGG-AA (--CU----- ---------- ---------- 241 --------UG -)GG-AACGA UAAC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AA----- ---------- ---------- ---------- ---GC--(-- --------UA 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C AGCC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.campbel2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio campbellii str. 40 ATCC 25920 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio campbellii str. 40 ATCC 25920 (T). ORGANISM Vibrio campbellii. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25920 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11291 ATCC 25920 (T) = CCM 2582 = NCIMB 1894 = CIP 75.01 (T) isolate_name= 40 BASE COUNT 155 a 132 c 183 g 126 t 3780 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-WC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -WGW-C-UCC -(UUCG)--G GAG-GC-WG- C-A---UG-U 901 NGG-AAUAUU G-CDCAAU-- GG-GC-(GCA A)-GCC-UKA UGCA|-GCUA UGCH-GC-GU 961 G-U-GU-G-W A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GB-GAG-- GA-A-GG-UA --GUG-BAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UKAAGG- AAUA-CCKG- 1441 -U-K-GC(-K AA-G)GCKG- -YYYYCUB-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GUAA-GC- GU-KGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----BGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 ......GG-A CG-ACG--UC -A-AGUC-AU CAU-G-UC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCR -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.harveyi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio harveyi. ACCESSION No information KEYWORDS No information. SOURCE Vibrio harveyi. ORGANISM Vibrio harveyi. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56578 Ref 1: paper has cc # as ATCC 14126 ATCC 14126 (T) = CIP 103192 (T) legacy_attribute= genbank entry incorrectly had ATCC 14084 as cc # BASE COUNT 378 a 318 c 453 g 305 t 2922 others ORIGIN 1 .......... .......... .......... ..NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGGA-A. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AC--(-- --------UA 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAC|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-AGG-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C AGCC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.harveyi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio harveyi. ACCESSION No information KEYWORDS No information. SOURCE Vibrio harveyi. ORGANISM Vibrio harveyi. REFERENCE 1 AUTHORS Dorsch,M., Lane,D. and Stackebrandt,E. TITLE Towards a phylogeny of the genus Vibrio based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 42, 58-63 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56578 Ref 1: paper has cc # as ATCC 14126 Former RDP Sids: V.harvey84 ATCC 14126 (T) = CIP 103192 (T) legacy_attribute= genbank entry incorrectly had ATCC 14084 as cc # BASE COUNT 378 a 318 c 453 g 305 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUCUGGA-A. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AC--(-- --------UA 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAC|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-AGG-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCC--A 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C AGCC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.harveyi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio harveyi. ACCESSION No information KEYWORDS No information. SOURCE Vibrio harveyi. ORGANISM Vibrio harveyi. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74706 CIP 103192 (T) = ATCC 14126 (T) BASE COUNT 381 a 326 c 468 g 310 t 2891 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU AUNUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG AUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUAGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---ACC-(-- --------UA 541 CG-------- -)-GGU---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCUAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UA --GUG-UAG( U----UAAUA -----G---) CUGC-AU-UA 1081 ---------- -------U-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UU- 1261 G-UU-AAC|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -AGCA-UUUG A-AAC-UGGC A-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-AGG-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU CAA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C AGCC-UA-CC A-CUUU-GUG GU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.oriental 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio orientalis str. 717 CIP 102891 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio orientalis str. 717 CIP 102891 (T). ORGANISM Vibrio orientalis. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 102891 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74719 CIP 102891 (T) = NCIMB 2195 = ATCC 33934 (T) isolate_name= 717 BASE COUNT 371 a 327 c 467 g 299 t 2912 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU AACUGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAACG UUAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GCG|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UG --GAG-UCG( U----UAAUA -----G---) CGGC-CU-CA 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 N-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAU- 1321 -UGCA-UUUG A-AAC-UGGU G-GACUA-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -GGA-A--(- GAGA-)-UUC -U-GGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)AAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-A-C G-CU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.orienta2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio orientalis str. 716 ATCC 33933. ACCESSION No information KEYWORDS No information. SOURCE Vibrio orientalis str. 716 ATCC 33933. ORGANISM Vibrio orientalis. REFERENCE 1 AUTHORS Haygood,M.G. and Distel,D.L. TITLE Bioluminescent symbionts of flashlight fishes and deep-sea anglerfishes form unique lineages related to the genus Vibrio JOURNAL Nature 363, 154-156 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33933 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21731 isolate_name= 716 BASE COUNT 342 a 298 c 431 g 286 t 3019 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......G-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCUG---A -UGUG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCC-(-- --------UU 541 CG-------- -)-GGC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--C- G--CGU---- 661 ----CAGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UG --GAG-UUG( U----UAAUA -----G---) CGGC-CU-UA 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-CAG-GU -G|-GU-UC- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCU -CG-G-UAU- 1321 -UGCA-UUUG A-AAC-UGGU G-GACUU-GA GUA-----CU G-UA-GAGGG GGG-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --S..(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ANGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(WWGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -GGA-A--(- GAGA-)-UUA -G-GNNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GU--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- C-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)GAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UGGG A--GU-GGG- CU-GC-AAAA -GAA-G-UAG 3121 G-UAG-U-UA -AA-CC---- ---------- ---------- -----(---- -UUGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-A-C G-CU-UA-CC A-CUUU-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS V.orienta3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vibrio orientalis str. 717 ATCC 33934 (T). ACCESSION No information KEYWORDS No information. SOURCE Vibrio orientalis str. 717 ATCC 33934 (T). ORGANISM Vibrio orientalis. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33934 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11313 ATCC 33934 (T) = NCIMB 2195 = CIP 102891 (T) isolate_name= 717 BASE COUNT 162 a 138 c 192 g 122 t 3762 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-URA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GU-GAG-- GA-A-GG-UG --GAG-UCG( U----UAAUA -----G---) CGGC-CU-CA 1081 ---------- -------C-U U-GA-CGUU- A-GCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCYCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACA-CUC AG-A------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-NA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-Y---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A CG-ACG--UC -A-AGUC-AU CAU-G-GY-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAGAG GGC-A-G-C- CA-ACU-U(G 2881 -CGA)RAGU- ---------- GA-GCGAA-U CCCAA-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.E 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.14 AEROMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.14 AEROMONAS_GROUP. ORGANISM 2.14.3.14 AEROMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.E.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.14.1 RUM.AMYLOPHILUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.14.1 RUM.AMYLOPHILUS_SUBGROUP. ORGANISM 2.14.3.14.1 RUM.AMYLOPHILUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rum.amylop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminobacter amylophilus. ACCESSION No information KEYWORDS No information. SOURCE Ruminobacter amylophilus. ORGANISM Ruminobacter amylophilus. REFERENCE 1 AUTHORS Martens,B., Spiegl,H. and Stackebrandt,E. TITLE amylophilus: The relation between homology values and similarity coefficients Sequence of a 16S Ribosomal RNA gene of Ruminobacter JOURNAL Syst. Appl. Microbiol. 9, 224-230 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X06765 ATCC 29744 = VPI 2502B (T) = DSM 1361 BASE COUNT 414 a 328 c 485 g 312 t 2837 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAGUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-CUGGG- G-A--GCU-G C-CUGA---A -UGAG-G-GG 421 -GAC-AA-CA C--------- ------CU-- G(-GAAA-)C -GGGU-G--C UAAUACC-GC 481 GU-AAG---- ---------- ---------- ---------- ---CC--(-- --------UG 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GGCUGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCAGU--C- G--CAU---- 661 ----UCAG-- AUG---C-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --UG-GAG-- GA-A-GU-GU --AGU-AUG( U----UAACA -----G---) CAUG-CU-GC 1081 ---------- -------A-U U-GA-CGUU- A-CAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-AAG|U CAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -CGCA-UUUG A-AAC-UGAC A-GACUA-GA GUA-----CU G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACA--GA-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-UU-- -------A|G -AA-GC-AUG -UU-GC---- ---------- 1681 -(CAU-GA)- ---------- ---------- ---------- -------GUA -GUGUG-UUU 1741 CU--AA---- --GC-(UAA- ---C)G-CG- AUAA-AUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-CG--(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------U ---UGAG--- -AA----GUA 1981 -UUU-A--(- GAGA-)-UAG -A-UACG--- UG-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG---| CUC-AA-AUA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CA-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-UG -UA--CAGAG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGUA- ---------- GA-GCGGA-A CCCAG-AAAG -CA-A-CUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GAA- UU-GC-ACCA -GAA-G-UAG 3121 U-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-AU-UA-CC A-CGGU-GUG GUU-UA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-AUAG G(GGA-A)CC UGUGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tlm.auensi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tolumonas auensis str. TA 4 DSM 9187 (T). ACCESSION No information KEYWORDS No information. SOURCE Tolumonas auensis str. TA 4 DSM 9187 (T). ORGANISM Tolumonas auensis. REFERENCE 1 AUTHORS Fischer-Romero,C., Tindall,B.J. and Juettner,F. TITLE Tolumonas auensis gen. nov., sp. nov., a toluene-producing bacterium from anoxic sediments of a freshwater lake JOURNAL Int. J. Syst. Bacteriol. 46, 183-188 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 9187 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92889|g1064941 isolate_name= TA 4 BASE COUNT 354 a 324 c 450 g 280 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...GGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- NNG|-AC--G AGUG-ACGG- 361 -G-AC--G-U GAGU---AAU -GC-CUGGG- G-A--GCU-G C-CCAA---U -CGAG-G-GG 421 -GAU-AC-CA A--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-ACN---- ---------- ---------- ---------- ---CCC-(-- --------UG 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGUGGG- GA--CCC--- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--C- G--CGA---- 661 ----UUGG-- AUG---C-|A CCCAG----- -GU|----GG G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-UA 1021 --GG-GAG-- GA-A-GG-GG --UGA-UGU( C----UAAUA -----C---) GCAU-CA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-NNG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUC N-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GU-UUG -UG-C----- -C-------- 1681 -(AUU-AU)G A--------- ---------- ---------- --------GC -GUGGG-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------C ---UGAG--- -AA----GUU 1981 -UGU-A--(- GAGA-)-UAC -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGN---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CCCAC-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-NGUU UG-GU-ACCA -GAA-G-UAG 3121 U-UAG-U-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A C-GA-UU-AC A-CGGU-GUG AUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.E.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.14.2 ARM.HYDROPHILA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.14.2 ARM.HYDROPHILA_SUBGROUP. ORGANISM 2.14.3.14.2 ARM.HYDROPHILA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Wink,R., Stackebrandt,E., Valle,O., Daae,F.L., Rodseth,O.M. and Andersen,K. TITLE Classification of fish pathogenic vibrios based on comparative 16S rRNA analysis JOURNAL Int. J. Syst. Bacteriol. 45, 421-428 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71836|g967018 NCIMB 1102 (T) = ATCC 33658 = IMET 11051 = DSM 3241 = CIP 103209 (T) biol_source= Atlantic salmon (Salmo salar) BASE COUNT 321 a 290 c 394 g 256 t 3115 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-..AAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U AAG---AUCN C-AAA-GC-C CC-GGG-C(- NC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GANNN NNN-U|AGAA 1381 UU-UCAGGU- GUA-GCG(-G NGAAA)-UGC -GU-AGAG-A UC-UGAAGG- AAUA-CCNG- 1441 -U-U-UC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUACA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-A UU-AAAACUC -AAA-UGAAU UG-ACGGN-N -N-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-GCU--- ---------- ---------- -----(---- -UCNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GNNAGG-N-N G-UU-UA-CC A-CGGU-GUG U......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.spBB16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. BB16. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. BB16. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48263|g853710 isolate_name= BB16 BASE COUNT 72 a 65 c 103 g 60 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGG---- ---------- ----CAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida. ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11273 BASE COUNT 111 a 102 c 139 g 83 t 3941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... GG-GG-(GAA A)-CCC-UKA UGCA|-GCCA UGCC-GY-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UNAUA -----C---) GUGU-YA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 ......A-GA CUKACG-CUC AG-G------ -------UG- C-GUAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCN- N-NGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .....GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sp9533 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 359 a 337 c 481 g 287 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUN N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CNAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-NGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- NCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-UGGG A--GU-GGG- UU-GC-NCCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGN-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. masoucida str. 1-1-1 CIP 103210 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 103210 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74680 CIP 103210 (T) = NCIMB 2020 = ATCC 27013 (T) isolate_name= 1-1-1 BASE COUNT 359 a 336 c 478 g 287 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. achromogenes NCIMB 1110 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. achromogenes NCIMB 1110 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60407 NCIMB 1110 (T) = ATCC 33659 NB: two base diff's with Arm.salmo4 (1011r & 1018r) BASE COUNT 369 a 343 c 492 g 298 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sp1060 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. 93/1060-1. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. 93/1060-1. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Miller,J. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L31915|g493091 legacy_attribute= biovar:individual isolate No. 5 isolate_name= 93/1060-1 BASE COUNT 364 a 338 c 483 g 289 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AN-N NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CN(--UU-NG --)GG-UUGU AAA--GCNC| NUUN-AG-NG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAN--- NN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N N-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACCC-UAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60406 NCIMB 1102 (T) = ATCC 33658 = IMET 11051 = DSM 3241 = CIP 103209 (T) biol_source= Atlantic salmon (Salmo salar) NB: two base diff's with Arm.salmo8 (1011r & 1018r) NCIMB 1102 wrong? BASE COUNT 370 a 342 c 491 g 299 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. salmonicida NCIMB 1102 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60405 NCIMB 1102 (T) = ATCC 33658 = IMET 11051 = DSM 3241 = CIP 103209 (T) biol_source= Atlantic salmon (Salmo salar) BASE COUNT 370 a 342 c 491 g 299 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.salmo6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas salmonicida subsp. salmonicida CIP 103209 (T). ACCESSION No information KEYWORDS No information. SOURCE Aeromonas salmonicida subsp. salmonicida CIP 103209 (T). ORGANISM Aeromonas salmonicida. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74681 CIP 103209 (T) = ATCC 33658 = NCIMB 1102 (T) = IMET 11051 = DSM 3241 biol_source= Atlantic salmon (Salmo salar) BASE COUNT 360 a 335 c 477 g 288 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sp9701 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 363 a 338 c 479 g 296 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- N-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-GCC( -----UAAUA -----C---) GUGU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GNG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60417 ATCC 35941 = CDC 1306-83 BASE COUNT 372 a 341 c 490 g 299 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGU-CGC( -----UAAUA -----A---) CGGC-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sobri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sobria. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sobria. ORGANISM Aeromonas sobria. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74683 CIP 74.33 (T) = CDC 9358-76 = NCIMB 12065 = ATCC 43979 (T) = CIP 7433 (T) BASE COUNT 361 a 332 c 476 g 291 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-AAGG-UU --GGC-AGC( -----UAAUA -----U---) CUGU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUU C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.sobria 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sobria. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sobria. ORGANISM Aeromonas sobria. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60412 NCIMB 12065 = CDC 9358-76 = ATCC 43979 (T) = CIP 74.33 (T) = CIP 7433 (T) BASE COUNT 371 a 340 c 490 g 301 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GGAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-CAG( C----UAAUA -----U---) CUGU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUU C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.eucren 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas eucrenophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas eucrenophila. ORGANISM Aeromonas eucrenophila. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60411 NCIMB 74 (T) = USCC 2045 = LMG 3774 = CIP 76.17 = CDC RH-63 = CCTM 885 = CCEB 704 = ATCC 23309 (T) BASE COUNT 371 a 341 c 491 g 299 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.eucre2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas eucrenophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas eucrenophila. ORGANISM Aeromonas eucrenophila. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74675 CIP 76.17 = USCC 2045 = LMG 3774 = CDC RH-63 = NCIMB 74 (T) = CCTM 885 = CCEB 704 = ATCC 23309 (T) BASE COUNT 361 a 334 c 477 g 288 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.spBB6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. BB6. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. BB6. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48266|g853712 isolate_name= BB6 BASE COUNT 74 a 64 c 103 g 59 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.veron2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas veronii. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas veronii. ORGANISM Aeromonas veronii. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11274 ATCC 35624 (T) = CDC 1169-83 = NCIMB 13015 BASE COUNT 159 a 138 c 199 g 117 t 3763 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .....C-UK| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGW-C-UCD -(UDCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CDCAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCY-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AD-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAKG- AAUA-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-KWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUNGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-N NUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.spBB7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. BB7. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. BB7. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48270|g853715 isolate_name= BB7 BASE COUNT 74 a 64 c 103 g 59 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.spBB8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. BB8. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. BB8. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48271|g853716 isolate_name= BB8 BASE COUNT 74 a 64 c 103 g 59 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.veron3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas veronii. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas veronii. ORGANISM Aeromonas veronii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74684 ATCC 35624 (T) = CDC 1169-83 = NCIMB 13015 BASE COUNT 363 a 334 c 475 g 288 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.veroni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas veronii. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas veronii. ORGANISM Aeromonas veronii. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60414 NCIMB 13015 = CDC 1169-83 = ATCC 35624 (T) BASE COUNT 373 a 341 c 489 g 299 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.ichthi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas ichthiosmia. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas ichthiosmia. ORGANISM Aeromonas ichthiosmia. REFERENCE 1 AUTHORS Cai,J., Martinez-Murcia,A.J. and Collins,M.D. TITLE Aeromonas enteropelogenes and Aeromonas ichthiosmia are identical to Aeromonas trota and Aeromonas veronii, respectively, as revealed by small- subunit rRNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 43, 855-856 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71120 BASE COUNT 376 a 352 c 497 g 304 t 2847 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----UAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CNNGG UAACCC-UAG G(GNA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.schubr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas schubertii. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas schubertii. ORGANISM Aeromonas schubertii. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60416 DSM 4882 (T) = CDC 2446-81 = ATCC 43700 BASE COUNT 369 a 341 c 490 g 302 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UGG( U----UAAUA -----C---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCUA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.schub2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas schubertii. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas schubertii. ORGANISM Aeromonas schubertii. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74682 ATCC 43700 = CDC 2446-81 = DSM 4882 (T) BASE COUNT 359 a 334 c 476 g 291 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UGG( U----UAAUA -----C---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-GACUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCUA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.janda2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas jandaei. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas jandaei. ORGANISM Aeromonas jandaei. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74678 BASE COUNT 361 a 336 c 476 g 287 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.jandae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas jandaei. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas jandaei. ORGANISM Aeromonas jandaei. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60413 BASE COUNT 371 a 343 c 490 g 298 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.allsac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas allosaccharophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas allosaccharophila. ORGANISM Aeromonas allosaccharophila. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Esteve,C., Garay,E. and Collins,M.D. TITLE Aeromonas allosaccharophila sp. nov., a new mesophilic member of the genus Aeromonas. JOURNAL FEMS Microbiol. Lett. 70, 199-205 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S39232 BASE COUNT 373 a 341 c 490 g 298 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGG-UAG( C----GAAUA -----A---) CUGC-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -CUA-A--(- GAGA-)-UUG -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.spBB3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas sp. str. BB3. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas sp. str. BB3. ORGANISM Aeromonas sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48264|g853711 isolate_name= BB3 BASE COUNT 72 a 65 c 102 g 61 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------..UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.media2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas media. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas media. ORGANISM Aeromonas media. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11272 BASE COUNT 153 a 137 c 188 g 109 t 3789 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .AG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -WGW-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCU-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UNAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAG-A UC-NKGAGG- AAUA-CCKG- 1441 -U-G-SC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUN-NA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-N NUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.media3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas media. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas media. ORGANISM Aeromonas media. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74679 ATCC 33907 (T) = NCIMB 2237 BASE COUNT 362 a 335 c 474 g 289 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.media 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas media. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas media. ORGANISM Aeromonas media. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60410 ATCC 33907 (T) = NCIMB 2237 BASE COUNT 372 a 342 c 488 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GCAU-CA-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.hphila 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas hydrophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE DNA sequencing: lack of congruence with results of DNA-DNA hybridizations Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60404 ATCC 7966 = NCIMB 9240 (T) = CIP 76.14 (T) BASE COUNT 374 a 341 c 487 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GUAU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.hphil4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas hydrophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74677 CIP 76.14 (T) = ATCC 7966 = NCIMB 9240 (T) BASE COUNT 364 a 334 c 473 g 289 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GUAU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.hydrop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas hydrophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59148 ATCC 7966 = NCIMB 9240 (T) = CIP 76.14 (T) BASE COUNT 369 a 337 c 481 g 295 t 2894 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GUAU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-NG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.hphil3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas hydrophila. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74676 NB: paper lists Arm.hphil3 as X74677 BASE COUNT 365 a 333 c 472 g 290 t 2916 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --UGA-UGC( C----UAAUA -----C---) GUAU-CA-AC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.cavia2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas caviae. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas caviae. ORGANISM Aeromonas caviae. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60409 ATCC 15467 = DSM 30188 = IFO 13282 BASE COUNT 374 a 339 c 487 g 302 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K8 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K8.. ACCESSION No information KEYWORDS No information. SOURCE clone K8. ORGANISM clone K8. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91523|g987798 BASE COUNT 89 a 72 c 116 g 68 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAAAGCGC- ACG-CAG-CC -G|-GU-UG- 1261 G-AU-AAG|U UAGG--AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACS-SNC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GG---- --AC-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.caviae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas caviae. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas caviae. ORGANISM Aeromonas caviae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11267 BASE COUNT 156 a 135 c 197 g 119 t 3769 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -WGU-C-UCC -(UUCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CKCAAU-- GG-GG-(GAA A)-CCC-UKA UGCA|-GCYA UGCB-GC-GU 961 G-U-GU-G-K A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GY --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UKAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCKG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCYCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-KWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----DGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GM---- --MK-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-NN-N NUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.cavia5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas caviae. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas caviae. ORGANISM Aeromonas caviae. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11268 Former RDP Sids: Arm.hphil2 IFO 13282 = DSM 30188 = ATCC 15467 NB: former name Aeromonas hydrophila BASE COUNT 144 a 130 c 181 g 106 t 3815 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCH-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... ........G- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CNN-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-NN-C CUUAC-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2011 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2011. str. SBR2011. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2011. str. SBR2011. ORGANISM str. SBR2011. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84555|g871676 isolate_name= SBR2011 BASE COUNT 97 a 93 c 139 g 72 t 3975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---C-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GNCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G40 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G40.. ACCESSION No information KEYWORDS No information. SOURCE clone G40. ORGANISM clone G40. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91292|g987040 BASE COUNT 84 a 69 c 108 g 68 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ......UUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GM---- -----(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.cavia4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas caviae. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas caviae. ORGANISM Aeromonas caviae. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74674 CIP 76.16 (T) = NCIMB 13016 = NRRL B-968 = ATCC 15468 (T) = NCIMB 9235 BASE COUNT 363 a 332 c 473 g 290 t 2918 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGN-A--(- GAGA-)-UNC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.hphil5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas hydrophila.. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas hydrophila. ORGANISM Aeromonas hydrophila. REFERENCE 1 AUTHORS Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. TITLE Comparative sequence analysis of 23S rRNA from proteobacteria JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87271|g1164998 BASE COUNT 377 a 350 c 499 g 310 t 2840 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-CUAG G(GGA-A)CC UGGGGU--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.cavia3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas caviae. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas caviae. ORGANISM Aeromonas caviae. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60408 NCIMB 13016 = NRRL B-968 = ATCC 15468 (T) = CIP 76.16 (T) = NCIMB 9235 BASE COUNT 373 a 340 c 488 g 301 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.trota 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas trota. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas trota. ORGANISM Aeromonas trota. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60415 BASE COUNT 371 a 340 c 490 g 301 t 2874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.epelog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas enteropelogenes. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas enteropelogenes. ORGANISM Aeromonas enteropelogenes. REFERENCE 1 AUTHORS Cai,J., Martinez-Murcia,A.J. and Collins,M.D. TITLE Aeromonas enteropelogenes and Aeromonas ichthiosmia are identical to Aeromonas trota and Aeromonas veronii, respectively, as revealed by small- subunit rRNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 43, 855-856 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71121 BASE COUNT 364 a 338 c 479 g 298 t 2897 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GNAA-- ---GCAGGG- GN--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- N--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-GGCUA-GA GUC-----UU G-UA-GAGGG GNN-N|AGAA 1381 UU-CCAGGU- NUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UNC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-G |-UC--CUU- 2281 UN--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CN -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arm.trota2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromonas trota. ACCESSION No information KEYWORDS No information. SOURCE Aeromonas trota. ORGANISM Aeromonas trota. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S42871 BASE COUNT 370 a 339 c 490 g 300 t 2877 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- A-A--AUU-G C-CCAG---U -CGAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GCAGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUG--C- G--CGA---- 661 ----UUGG-- AUA---U-|G CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-AG-GU --CAG-UAG( C----UAAUA -----U---) CUGC-UG-GC 1081 ---------- -------U-G U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 G-AU-AAG|U UAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUA A-AAC-UGUC C-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G GAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UG|--- ---------U ---CUGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCA-GA-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAA-AAAG -CG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15 ENTERICS_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15 ENTERICS_AND_RELATIVES. ORGANISM 2.14.3.15 ENTERICS_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.1 BUCHNERA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.1 BUCHNERA. ORGANISM 2.14.3.15.1 BUCHNERA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphSgr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63246 endosymbiont_of= Schizaphis graminum BASE COUNT 439 a 318 c 427 g 326 t 2866 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-G C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--CCUUU- 601 --(------- ---UUU---- ---)------ --AAAGG--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-AA-AA --UUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UGCUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -UAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 A-UUU-C-CU -AA-CCAC-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGAAG-G-C G-UC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphidi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,L. and Baumann,P. TITLE putative 16S rRNA operon unlinked to the 23S rRNA gene: sequence determination and promoter analysis Buchnera aphidicola (endosymbiont of aphids) contains a JOURNAL Gene 137, 171-178 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18927 nat_host= Schizaphis graminum (aphid) BASE COUNT 454 a 329 c 438 g 335 t 2820 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-G C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--CCUUU- 601 --(------- ---UUU---- ---)------ --AAAGG--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-AA-AA --UUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UGCUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -UAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 A-UUU-C-CU -AA-CCAC-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGAAG-G-C G-UC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUAA|AAA~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphRma 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63247 endosymbiont_of= Rhopalosiphum maidis BASE COUNT 441 a 317 c 426 g 323 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-G C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- --UUUUU--- ---)------ ---AAGG--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-AG-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCC-G-CA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UGCUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 A-UAU-C-CU -AA-CCAU-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A UGGAAG-G-C G-UC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphRpa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63248 endosymbiont_of= Rhopalosiphum padi BASE COUNT 440 a 318 c 425 g 324 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAA---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--UCUU-- 601 --(------- ---UUU---- ---)------ ---AAGA--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GGC-CA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GG-GAG-- GA-A-AG-AA --GUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 A-UAU-C-CU -AA-CCUU-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAAG-G-C G-UC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphUso 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63250 endosymbiont_of= Uroleucon sonchi BASE COUNT 439 a 314 c 423 g 331 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAAAA-GU (--UU----- ---------- ---------- 241 --------CG -)GC-UUUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GU 541 AA-------- -)-AAC---- ---------- ----UAAA-- ---GUAGGG- GA--CC---- 601 --(------- ---UAUU--- ---)------ ----AGG--| -CCUUA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GG-GAG-- GA-A-AA-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------C-G U-GA-CGUU- A-CCU-G-CA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UGCUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -UAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAU-C-CU -AA-CCUG-- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAAG-G-C G-CC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Acrt.P 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont P. ACCESSION No information KEYWORDS No information. SOURCE symbiont P. ORGANISM symbiont P. REFERENCE 1 AUTHORS Unterman,B.M., Baumann,P. and McLean,D.L. TITLE pea aphid symbiont relationships established by analysis of 16s rrnas JOURNAL J. Bacteriol. 171, 2970-2974 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M27039 symbiont_of= symbiont P of Acyrthosiphon pisum NB: IDENT:general enteric BASE COUNT 445 a 333 c 440 g 329 t 2829 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--A AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUUU--- ---)------ -----GG--| -CCUCA--U- G--CUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-AA-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------C-G U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---GUGU G-AAA-UC-C CU-AGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA A-AACUA-GA GUU-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUC 1981 -UUU-A--(- GAAA-)-UAA -A-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAU-C-CU -AA-CCCU-- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAAG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphDno 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63251 endosymbiont_of= Diuraphis noxia BASE COUNT 440 a 317 c 419 g 323 t 2877 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UCCUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GCU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- --UUUUU--- ---)------ -----GG--| -CCUCA--U- G--CUU---- 661 ----AUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-G-AU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GA-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAA-- GA-A-AA-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------C-C U-GA-CGUU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-AACUA-GA G-A-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -G-(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------A ---CAGA--- -AU----UUU 1981 -UUA-G--(- AAAU-)-AAA -A-AAG---- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-AA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GUGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CAA)AGAC- ---------- AA-GCAAA-U CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAU-C-CU -AA-CU---- ---------- ---------- -----(---- AUAAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAAG-G-C G-CC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphMpe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63249 endosymbiont_of= Myzus persicae BASE COUNT 437 a 315 c 426 g 326 t 2872 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GGAG---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----UAAA-- ---GUGGGG- GA--CCU--- 601 --(------- ---UUU---- ---)------ ----AGG--| -CCUCA--U- G--CUUU--- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CA 1021 --GG-GAG-- GA-A-AG-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCU-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-AACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------GAA -GUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAA--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CAA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAU-C-CU -AA-CCC--- ---------- ---------- -----(---- -UCAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-G-C G-CC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphMvi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63253 endosymbiont_of= Mindarus victoria BASE COUNT 446 a 309 c 411 g 341 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGA-AA (--UU----- ---------- ---------- 241 --------UA -)UU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- A-A--UCU-G C-CUAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GAAGGG- GA--UCU--- 601 --(------- --UUUAUC-- ---)------ ----AGA--| -CCUUU--C- A--CUUU--- 661 ----UUAG-- AUG---A-|G CCCAG----- -AC|----GA G--AUUA-G- CUA-G---AU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A U|-GGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-GU-CG 1021 --GA-AAA-- GA-A-AA-AA --AUA-AAA( C----UAAUA -----A---) UUUU-AU-UU 1081 ---------- -------A-C U-GA-CGUU- A-UCC-G-AA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -U|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AAG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAA A-GACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA C-GACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-CUG -UU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -AUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UUU 1981 -UUU-A--(- GAAA-)-UAA -G-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---AG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAAAG AGA-A-G-C- AA-CUC-U(G 2881 --AA)AGAC- ---------- AA-GCAAA-C CUCAU-AAAG -UA-A-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAA 3121 G-UAA-C-UU -AA-CCU--- ---------- ---------- -----(---- UUAAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGCGA-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphCvi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63252 endosymbiont_of= Chaitophorus viminalis BASE COUNT 444 a 305 c 423 g 347 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--GC-AU-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AGAAAAA-AA (--UU----- ---------- ---------- 241 --------UA -)UU-UUUUU CUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CCAA---A -AAAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------AA 541 AA-------- -)-AAC---- ---------- ----UAAA-- ---GUAGGG- GA--CUUUUA 601 --(------- ---UUU---- ---)------ -UAAAAG--| -CCUUA--C- G--UUU---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---AU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A U|-GGC-AA- CAA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-GU-UA 1021 --GG-GAG-- GA-A-AG-AA --AUA-UAU( A----UAAUA -----C---) AUAU-AU-UU 1081 ---------- -------U-G U-GA-CGUU- A-CCU-A-AA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUUG A-AAC-UAAA A-GACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 AUG--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-CUG -UU-UC---- ---------- 1681 -(CUU-AG)A ---------- ---------- ---------- -------GAA -AUGAC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UUU 1981 -UUU-A--(- GAGA-)-UAA -G-AAAG--- UG-------- ---CC----- --(UUC---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AC G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GAGA C-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AA -UA--CAAAG AGA-A-G-C- AA-AUC-U(G 2881 -CGA)AGAC- ---------- AA-GCCAA-C CUCAU-AAAG -UU-C-GUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAA 3121 G-UAU-C-UU -AA-CCU--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphPbe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63254 endosymbiont_of= Pemphigus betae BASE COUNT 424 a 322 c 426 g 345 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G CGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-G C-CCGA---A -AGAG-G-GG 421 -GAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------G UU-U--A-U- -------(-- ------UAUA 541 UU-UU----- -)-------- GU-AA----A CC--AAAA-- ---UGGGGG- AC--UU---- 601 --(------- -AUUUAUA-- ---)------ -----AG--| -CCUCA--U- G--UUU---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GA G--AU-A-G- CUU-G---AU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A U|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-CGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-AA-AG --AAA-UGA( U----UAAUA -----C---) UUAU-UU-CU 1081 ---------- -------C-U U-GA-CGUU- A-CCC-G-AA G-AA--GAAG ---------C 1141 -ACCGGCU-A AC-CC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 UAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUCU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAA A-UUCUA-GA GGA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCCU- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(GUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -AUGAC-UUC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUA- 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAA--- -AA----UUU 1981 -UUC-A--(- GAGA-)-UGA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAU -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UA -UA--CAAAG AGA-A-G-C- AA-CCC-U(G 2881 -UAA)AGAU- ---------- AA-GCAAA-C CUCAU-AAAG -UA-C-AUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CCU--- ---------- ---------- -----(---U AUUUUUU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-C G-CC-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A. and Baumann,P. TITLE 16s rRNA sequence of S. chinensis JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z19056|g497276 BASE COUNT 414 a 303 c 411 g 337 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -AGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AU-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AA (--UAU---- ---------- ---------- 241 -------UUU -)UU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--A AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CUAA---A -AGAG-G-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GG 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUAGGG- GA--CC---- 601 --(------- ---UUUU--- ---)------ -----GG--| -CCUUA--C- G--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUU-G---AU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-UGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAA-- GA-A-AG-AG --AAC-UUU( UA---UAAUA ----CA---) UUAG-UU-CU 1081 ---------- -------U-A U-GA-CGUU- A-CCC-G-AA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAU A-GGCUA-GA GUA-----UC A-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UAGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGA- -CCUCCUA-- ---------- ---------- ---------A 1501 AUG--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -CU-UC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GAA -GUGUC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UUU 1981 -UUU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-GAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-U-G-C- AG-CUC-U(G 2881 -CAA)AGAU- ---------- AA-GCAAA-C CUCAU-AAAG -UA-U-GUC- GUAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-CAA 3121 G-UAG-C-UU -AA-CCA--- ---------- ---------- -----(--AG UUUUAUC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAUG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Buc.aphMrh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Buchnera aphidicola.. ACCESSION No information KEYWORDS No information. SOURCE Buchnera aphidicola. ORGANISM Buchnera aphidicola. REFERENCE 1 AUTHORS Munson,M.A., Baumann,P., Clark,M.A., Baumann,L., Moran,N.A., Voegtlin,D.J. and Campbell,B.C. TITLE Evidence for the establishment of aphid-eubacterium endosymbiosis in an ancestor of four aphid families JOURNAL J. Bacteriol. 173, 6321-6324 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63255 endosymbiont_of= Melaphis rhois BASE COUNT 442 a 315 c 420 g 343 t 2856 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -AGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AU-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGAAGG-UU (--UU----- ---------- ---------- 241 -------UUU -)AA-C-UUC UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--A AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CUAA---A -AGAG-G-GG 421 -GAC-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUU-(-- --------GA 541 AA-------- -)-AAC---- ---------- ----CAAA-- ---GUAGGG- GA--CCAAAA 601 --(------- ---AAU---- ---)------ -UUUUGG--| -CCUUA--C- A--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|---AGA GA-AUUA-G- CUU-G---AU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A U|-UGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAA-- GA-A-AA-AU --AAC-UUA( UU---UAAUA ----AA---) UAAG-UU-AU 1081 ---------- -------U-C U-GA-CGUU- A-CCC-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-AGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUCU G-AAA-UC-C CU-AGG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAU A-GACUA-GA GUC-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UAGAGG- AAUA-CCCU- 1441 -U-G-GC(-G AA-A)GCGG- -CCUCCUA-- ---------- ---------- ---------A 1501 ACG--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-UC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GAA -GUGGC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UUU 1981 -UUU-A--(- GAGA-)-UAA -A-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-UA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- AA-CUC-U(G 2881 -UAA)AGAU- ---------- AA-GCAAA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGU-CG -GAAU-CGC- -UAGCA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GGG- UU-GC-AAAA -GAA-G-CAG 3121 G-UAG-C-UU -AA-CCGG-- ---------- ---------- -----(---- -AUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U AGGAGG-G-C G-CC-UA-CC A-CUUU-GUG AUU-CA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.2 ESCHERICHIA_SALMONELLA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.2 ESCHERICHIA_SALMONELLA_GROUP. ORGANISM 2.14.3.15.2 ESCHERICHIA_SALMONELLA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.cholera 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella choleraesuis.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella choleraesuis. ORGANISM Salmonella choleraesuis. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12809 BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.cholera2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella choleraesuis subsp. choleraesuis str. serotype paratyphi A. ACCESSION No information KEYWORDS No information. SOURCE Salmonella choleraesuis subsp. choleraesuis str. serotype paratyphi A. ORGANISM Salmonella choleraesuis. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80682 isolate_name= serotype paratyphi A BASE COUNT 369 a 336 c 461 g 294 t 2916 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAANN-NN (--CU----- ---------- ---------- 241 --------UN -)CU-C-UUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--N ANUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--C----- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUAAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CC-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC N-CUUU-GU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.dublin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella dublin.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella dublin. ORGANISM Salmonella dublin. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12810 BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.enterit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella enteritidis.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella enteritidis. ORGANISM Salmonella enteritidis. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12811 BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.ptyphiA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella paratyphi.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella paratyphi. ORGANISM Salmonella paratyphi. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12812 legacy_attribute= biovar:A BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.tymurLT2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella typhimurium.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella typhimurium. ORGANISM Salmonella typhimurium. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12814 legacy_attribute= biovar:LT2 BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.typhi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella typhi.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella typhi. ORGANISM Salmonella typhi. REFERENCE 1 AUTHORS Iida,K., Abe,A., Matsui,H., Danbara,H., Wakayama,S. and Kawahara,K. TITLE Rapid and sensitive method for detection of Salmonella strains using a combination of polymerase chain reaction and reverse dot-blot hybridization JOURNAL FEMS Microbiol. Lett. 114, 167-172 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12813 BASE COUNT 81 a 71 c 108 g 66 t 4050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.bongori 4376 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella bongori. str. JEO 4162 16S ribosomal RNA gene, partial sequence; . ACCESSION AF0292 6 KEYWORDS . SOURCE Salmonella bongori. str. JEO 4162 16S ribosomal RNA gene, partial sequence. ORGANISM Salmonella bongori. REFERENCE 1 (bases 1 to 1498) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE sequences Phylogenetic relationships of Salmonella based on rRNA JOURNAL Int. J. Syst. Bacteriol. 48 Pt 2, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1498) AUTHORS Christensen,H. and Olsen,J.E. TITLE Direct Submission JOURNAL Submitted (08-OCT-1997) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg/Copenhagen 1870 C, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF029226 BASE COUNT 376 a 346 c 477 g 299 t 2878 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~U(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --AUA-AGG( U----UAAUA -----A---) CCUU-GU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UG-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCG A-AAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UC ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.bongori. 4376 bp RNA RNA 22-JUL-1998 DEFINITION Salmonella bongori. str. BR 1859 16S ribosomal RNA gene, partial sequence; . ACCESSION AF0292 7 KEYWORDS . SOURCE Salmonella bongori. str. BR 1859 16S ribosomal RNA gene, partial sequence. ORGANISM Salmonella bongori. REFERENCE 1 (bases 1 to 1498) AUTHORS Christensen,H., Nordentoft,S. and Olsen,J.E. TITLE Phylogenetic relationships of Salmonella based on rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 48 Pt 2, 605-610 (1998) STANDARD No information REFERENCE 2 (bases 1 to 1498) AUTHORS Christensen,H. and Olsen,J.E. TITLE Direct Submission JOURNAL Submitted (08-OCT-1997) Veterinary Microbiology, Royal Veterinary and Agricultural University, Bulowsvej 13, Frederiksberg/Copenhagen 1870 C, Denmark STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AF029227 BASE COUNT 374 a 348 c 478 g 297 t 2879 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~U(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGG---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --HCA-AGG( U----UAAUA -----A---) CCUU-GU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCG A-AAC-UGGC A-GGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.sp9712 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella sp. str. ATCC 9712. ACCESSION No information KEYWORDS No information. SOURCE Salmonella sp. str. ATCC 9712. ORGANISM Salmonella sp. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 9712 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80676 isolate_name= ATCC 9712 BASE COUNT 367 a 338 c 466 g 297 t 2908 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GCAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGC---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -UCUGG-A-A 841 (CUGA-GA-C UCG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACCGG-G -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-A-AC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CU---- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUU..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.give 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella give.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella give. ORGANISM Salmonella give. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80683 BASE COUNT 365 a 336 c 466 g 288 t 2921 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CC-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGN---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNNAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACNG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-GUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-N AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUNCA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAN-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CNA-NGGG A--GU-GGG- UU-GC-AAAA -NAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UCCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CU...... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.sofia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella sofia.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella sofia. ORGANISM Salmonella sofia. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80677 BASE COUNT 372 a 338 c 468 g 295 t 2903 others ORIGIN 1 .......... .......... .......... ...NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CAA 1981 -UNC-A--(- GAGA-)-UGG -A-UUNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CNG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C AGCU-UA-CC A-CUUU-GUG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.tymurium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella typhimurium. ACCESSION No information KEYWORDS No information. SOURCE Salmonella typhimurium. ORGANISM Salmonella typhimurium. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80681 BASE COUNT 390 a 349 c 484 g 310 t 2843 others ORIGIN 1 .......... .......... .......... ...NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CN--CUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-NN--N AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAA 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GNA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.enteriti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella enteritidis.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella enteritidis. ORGANISM Salmonella enteritidis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 374 a 335 c 464 g 298 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAANN-NG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CN---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCNG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GNG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAA 1981 -UCC-A--(- GAGA-)-UGG -A-NNUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.enterit3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella enteritidis.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella enteritidis. ORGANISM Salmonella enteritidis. REFERENCE 1 AUTHORS Lin,C.K. and Tsen,H.Y. TITLE Development and evaluation of two novel oligonucleotide probes based on 16S rRNA sequence for the identification of Salmonella in foods JOURNAL J. Appl. Bacteriol. 78 (5), 507-520 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S77744|g999039 BASE COUNT 166 a 148 c 213 g 132 t 3717 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(.CA A)-GCC-UGA UGCA|-GCCA UCCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --UUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----GAA 1981 -UCC-A--(- GAGA-)-UGG -A-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG....... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.shomron 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salmonella shomron.. ACCESSION No information KEYWORDS No information. SOURCE Salmonella shomron. ORGANISM Salmonella shomron. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80678 BASE COUNT 368 a 332 c 463 g 282 t 2931 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGN---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AG-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-NG --NUG-UGG( U----UAAUA -----A---) CCGC-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- ---C-(GAA- ---C)G-CG- UUAA-GUAGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CCC 1981 -UGU-A--(- GAGA-)-UAC GA-GANG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUANA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ANA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -NNN-N-UAG 3121 G-UAG-C-UN -AA-CU---- ---------- ---------- -----(---- -AUGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGGAG-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.hermanni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia hermannii.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia hermannii. ORGANISM Escherichia hermannii. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80675 BASE COUNT 362 a 332 c 456 g 283 t 2943 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GNC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CN--UUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--NUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --AU--CGG( U----UAAUA -----A---) CCGC-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AGC-GAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCCG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-A-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -NNN-G-UAG 3121 G-UAG-C-UN --N-C----- ---------- ---------- -----(---- -CUN.....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. W3110. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. W3110. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Miyamoto,K. TITLE Nucleotide sequence of 5'flanking region of the ribosomal RNA gene (rrnH) in E. coli JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D15061 (bases 5460 to 6134) isolate_name= W3110 BASE COUNT 174 a 148 c 216 g 137 t 3701 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-- -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-G-C---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GC--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GC--UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-C...... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrnH 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Nakayashiki,T., Adachi,T., Miki,T. and Inokuchi,H. TITLE Nucleotide sequence of the rrnH gene from Escherichia coli JOURNAL Unpublished (1992) STANDARD No information REFERENCE 2 AUTHORS Miyamoto,K. TITLE Nucleotide sequence of 5'flanking region of the ribosomal RNA gene (rrnH) in E. coli JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12649 (bases 1 to 869) NB: Two unrelated genbank entries combined to make this seq. D12649 (1..869)=E.colirrnH (686..1554); D12649 (1..869)=E .colirrnH (686..1554) BASE COUNT 386 a 351 c 485 g 316 t 2838 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-- -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-G-C---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GC--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GC--UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnH4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Nishimura,K., Komine,Y., Miyamoto,K., Kitabatake,M., Mathunaga,F., Hisano,T., Miki,T. and Inokuchi,H. TITLE Nucleotide sequence of the 3'flanking region of the ribosomal RNA gene (rrnH) in E.coli JOURNAL Unpublished (1992) STANDARD No information REFERENCE 2 AUTHORS Nakayashiki,T., Adachi,T., Miki,T. and Inokuchi,H. TITLE Nucleotide sequence of the rrnH gene from Escherichia coli JOURNAL Unpublished (1992) STANDARD No information REFERENCE 3 AUTHORS Condon,C., Philips,J., Fu,Z.Y., Squires,C. and Squires, C.L. TITLE Comparison of the expression of the seven ribosomal RNA operons in Escherichia coli JOURNAL EMBO J. 11 (11), 4175-4185 (1992) STANDARD No information REFERENCE 4 AUTHORS Miyamoto,K. and Inokuchi,H. TITLE Nucleotide sequence of 5'flanking region of the ribosomal RNA gene (rrnH) in E. coli JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D83536|g1208942 (bases 33317 to 34753) operon= rrnH gene BASE COUNT 363 a 328 c 456 g 290 t 2939 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-- -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-G-C---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GC--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GC--UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s11 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s11. str. s11. ACCESSION No information KEYWORDS No information. SOURCE str. s11. str. s11. ORGANISM str. s11. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69315|g1181097 isolate_name= s11 BASE COUNT 82 a 75 c 118 g 69 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -N|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --S--(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Nakayashiki,T., Adachi,T., Miki,T. and Inokuchi,H. TITLE Nucleotide sequence of the rrnH gene from Escherichia coli JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12649 (bases 1 to 869) operon= rrnH gene BASE COUNT 214 a 204 c 270 g 181 t 3507 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.GAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnH3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsH gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsH gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 223771 to 225312) legacy_attribute= CG Site No. 183 operon= rrsH gene isolate_name= MG1655 BASE COUNT 388 a 352 c 486 g 316 t 2834 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnH2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnH gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnH gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80730 operon= rrnH gene isolate_name= PK3 BASE COUNT 357 a 325 c 450 g 280 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--NUU- 2281 NG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-NAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.spunknwn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia sp.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia sp. ORGANISM Escherichia sp. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80733 BASE COUNT 362 a 329 c 461 g 290 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U GGGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AAUAAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--C----- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( C--CAGCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACNG--- -AA----NUU 1981 -UCC-A--(- GAGA-)-UGA -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUN 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-N-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Shi.dysnt2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shigella dysenteriae. ACCESSION No information KEYWORDS No information. SOURCE Shigella dysenteriae. ORGANISM Shigella dysenteriae. REFERENCE 1 AUTHORS Wang,R., Cao,W.W. and Cerniglia,C.E. TITLE Phylogenetic analysis and identification of Shigella using 16S rRNA gene sequencing and PCR methods JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X96966|g1255974 BASE COUNT 375 a 341 c 472 g 299 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-G-UUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S11 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S11. str. S11. ACCESSION No information KEYWORDS No information. SOURCE str. S11. str. S11. ORGANISM str. S11. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31490|g1143141 isolate_name= S11 BASE COUNT 212 a 194 c 274 g 174 t 3522 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ....U-UGAG |-GGNG---- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGN-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UCC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGA- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGN-C CUCAU-AAAG -UG-C-GUC- GGAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GNCUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GN-GGC-(UC -AGA-AU)-G NCA-CGGUG- AAUAC-GUN- CCC-GGG-NC UUGUA----C 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnE2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnE gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnE gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80728 operon= rrnE gene isolate_name= PK3 BASE COUNT 347 a 318 c 440 g 273 t 2998 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUN 1741 NG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UNN-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 NG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC..... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli.1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Brosius,J., Dull,T.J., Sleeter,D.D. and Noller,H.F. TITLE operon from Escherichia coli Gene organization and primary structure of a ribosomal RNA JOURNAL J. Mol. Biol. 148, 107-127 (1981) STANDARD No information REFERENCE 2 AUTHORS Csordas-Toth,E., Boros,I. and Venetianer,P. TITLE Structure of the promoter region for the rrnB gene in Escherichia coli JOURNAL No information STANDARD No information REFERENCE 3 AUTHORS Brosius,J., Palmer,M.L., Kennedy,P.J. and Noller,H.F. TITLE Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli JOURNAL Proc. Natl. Acad. Sci. U.S.A. 75, 4801-4805 (1978) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: J01695 operon= rrnB operon NB: strain possibly MRE600 or C600 galK BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrsE 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Burland,V.D., Plunkett,G.,III, Sofia,H.J. and Daniels,D.L. TITLE Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes JOURNAL Nucleic Acids Res. in press (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00006 isolate_name= MG1655 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnA3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsA gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsA gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 4033120 to 4034661) legacy_attribute= CG Site No. 189 operon= rrsA gene isolate_name= MG1655 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnE3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsE gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsE gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 4205725 to 4207266) legacy_attribute= CG Site No. 185 operon= rrsE gene isolate_name= MG1655 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnB3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsB gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsB gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 4164238 to 4165779) legacy_attribute= CG Site No. 188 operon= rrsB gene isolate_name= MG1655 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrsB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsB gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsB gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Burland,V.D., Plunkett,G.,III, Sofia,H.J. and Daniels,D.L. TITLE Analysis of the Escherichia coli genome IV. DNA sequence of the region from 89.2 to 92.8 minutes JOURNAL Nucleic Acids Res. in press (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00006 operon= rrsB gene isolate_name= MG1655 BASE COUNT 389 a 352 c 487 g 314 t 2834 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrsA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. CgSC No. 189 [gene=rrsA]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. CgSC No. 189 [gene=rrsA]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Daniels,D.L., Plunkett,G.III., Burland,V.D. and Blattner,F.R . TITLE Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes JOURNAL Science 257, 771-778 (1992) STANDARD No information REFERENCE 2 AUTHORS Young,R.A. TITLE Transcription termination in the Escherichia coli ribosomal RNA operon rrnC JOURNAL J. Biol. Chem. 254, 12725-12731 (1979) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M87049 operon= rrsA isolate_name= CgSC No. 189 BASE COUNT 389 a 351 c 485 g 314 t 2837 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- KA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|S-SUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Ringquist,S., Cunningham,P., Weitzmann,C., Formenoy,L., Pleij,C ., Ofengand,J. and Gold,L. TITLE Transalation initiation complex formation with 30 S ribosomal particles mutated at conserved positions in the 3'-minor domain of 16 S RNA JOURNAL J. Mol. Biol. 234, 14-27 (1993) STANDARD No information REFERENCE 2 AUTHORS Weitzmann,C.J., Cunningham,P.R., Nurse,K. and Ofengand,J. TITLE Chemical evidence for domain assembly of the Escherichia coli 30S ribosome JOURNAL FASEB J. 7, 177-180 (1993) STANDARD No information REFERENCE 3 AUTHORS van Keulen,H., Gutell,R.R., Gates,M.A., Campbell,S.R., Erlandsen,S.L., Jarroll,E.L., Kulda,J. and Meyer,E.A. TITLE Unique phylogenetic position of Diplomonadida based on the complete small subunit ribosomal RNA sequence of Giardia ardeae, G. muris, G. duodenalis and Hexamita sp JOURNAL FASEB J. 7, 223-231 (1993) STANDARD No information REFERENCE 4 AUTHORS Brosius,J., Dull,T.J., Sleeter,D.D. and Noller,H.F. TITLE Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli JOURNAL J. Mol. Biol. 148, 107-127 (1981) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: V00348|g42877 (bases 1518 to 2959) operon= rrnB operon NB: ref 4 Ringquist, J. Mol. Biol. 234, 14-27 (1993), strain=JM101 BASE COUNT 367 a 329 c 458 g 288 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnA2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnA gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80721 operon= rrnA gene isolate_name= PK3 BASE COUNT 364 a 331 c 461 g 290 t 2930 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnB2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnB gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnB gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80722 operon= rrnB gene isolate_name= PK3 BASE COUNT 363 a 332 c 461 g 289 t 2931 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 N-NNG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coliPK3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80731 isolate_name= PK3 BASE COUNT 363 a 332 c 460 g 287 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 N-NNG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Rossau,R. and Van Heuverswijn,H. TITLE Hybridization probes for detecting neisseria strains JOURNAL Patent: EP 0337896-A 96 18-OCT-1989; N.V. INNOGENETICS S.A STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: A14565|g640886 BASE COUNT 389 a 352 c 487 g 313 t 2835 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Carbon,P., Ehresmann,C., Ehresmann,B. and Ebel,J.-P. TITLE The complete nucleotide sequence of the ribosomal 16-S RNA from Escherichia coli: Experimental details and cistron heterogeneities JOURNAL Eur. J. Biochem. 100, 399-410 (1979) STANDARD No information REFERENCE 2 AUTHORS Carbon,P., Ehresmann,C., Ehresmann,B. and Ebel,J.-P. TITLE The sequence of Escherichia coli ribosomal 16 S RNA determined by new rapid gel methods JOURNAL FEBS Lett. 94, 152-156 (1978) STANDARD No information REFERENCE 3 AUTHORS Ehresmann,C., Stiegler,P., Carbon,P. and Ebel,J.-P. TITLE Recent progress in the determination of the primary sequence of the 16 S RNA of Escherichia coli JOURNAL FEBS Lett. 84, 337-341 (1977) STANDARD No information REFERENCE 4 AUTHORS Ehresmann,C., Stiegler,P., Fellner,P. and Ebel,J.-P. TITLE The determination of the primary structure of the 16s ribosomal rna of escherichia coli: III. Further studies JOURNAL Biochimie 57, 711-748 (1975) STANDARD No information REFERENCE 5 AUTHORS Ehresmann,C., Stiegler,P., Fellner,P. and Ebel,J.-P. TITLE the determination of the primary structure of the 16S ribosomal RNA of Escherichia coli: (2) nucleotide sequences of products from partial enzymatic hydrolysis JOURNAL Biochimie 54, 901-967 (1972) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: J01859|g174375 BASE COUNT 389 a 352 c 487 g 313 t 2835 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli4100 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MC4100. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MC4100. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80732 isolate_name= MC4100 BASE COUNT 364 a 333 c 458 g 285 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GN-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGNN|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-NAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUA-- UCA-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 N-NNG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli5922 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. Seattle 1946 ATCC 25922. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. Seattle 1946 ATCC 25922. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25922 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80724 ATCC 25922 = NCIMB 12210 = DSM 1103 isolate_name= Seattle 1946 BASE COUNT 365 a 330 c 462 g 289 t 2930 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAACG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAN ---------N 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GNGC- ANG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli.. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Dragon,F. and Brakier-Gingras,L. TITLE Interaction of eschericia coli ribosomal protein S7 with 16S rRNA JOURNAL Nucleic Acids Res. 21, 1199-1203 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72324 BASE COUNT 115 a 113 c 141 g 99 t 3908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... ......GG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGU...... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. A19. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. A19. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Ehresmann,C., Stiegler,P., Carbon,P., Ungewickell,E. and Garrett,R.A. TITLE The topography of the 5' end of 16-S RNA in the presence and absence of ribosomal proteins S4 and S20 JOURNAL Eur. J. Biochem. 103, 439-446 (1980) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M25052|g174380 (bases 1 to 84) legacy_attribute= T1 ribonuclease sensitive 16S rRNA region isolate_name= A19 BASE COUNT 165 a 146 c 216 g 129 t 3720 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --SAAGM-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AK-AAY---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ---CGAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-G.... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli1775 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. U 5/41 ATCC 11775 (T). ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. U 5/41 ATCC 11775 (T). ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11775 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80725 ATCC 11775 (T) = NCTC 9001 isolate_name= U 5/41 BASE COUNT 366 a 329 c 463 g 289 t 2929 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GCA---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|A-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Shi.dysntr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shigella dysenteriae.. ACCESSION No information KEYWORDS No information. SOURCE Shigella dysenteriae. ORGANISM Shigella dysenteriae. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80680 BASE COUNT 369 a 334 c 467 g 298 t 2908 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-NU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. 2348/69 EPEC, 127:H6. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. 2348/69 EPEC, 127:H6. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Ridell,J., Siitonen,A., Paulin,L., Mattila,L., Korkeala,H. and Albert,M.J. TITLE Hafnia alvei in stool specimens from patients with diarrhea and healthy controls JOURNAL J. Clin. Microbiol. 32 (9), 2335-2337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z47359|g693930 isolate_name= 2348/69 EPEC, 127:H6 BASE COUNT 81 a 74 c 101 g 58 t 4062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnC2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnC gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnC gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80723 operon= rrnC gene isolate_name= PK3 BASE COUNT 363 a 333 c 460 g 283 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CAU|-G 61 GCUCAG-AUN -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- N-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UNN-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 NG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Shi.sonnei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shigella sonnei.. ACCESSION No information KEYWORDS No information. SOURCE Shigella sonnei. ORGANISM Shigella sonnei. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80726 BASE COUNT 370 a 335 c 467 g 292 t 2912 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UCC-A--(- GAGA-)-UGG AA-AAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GCUAAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Shi.flxner 4376 bp RNA RNA 02-JUL-1998 DEFINITION Shigella flexneri.. ACCESSION No information KEYWORDS No information. SOURCE Shigella flexneri. ORGANISM Shigella flexneri. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80679 BASE COUNT 369 a 334 c 465 g 297 t 2911 others ORIGIN 1 .......... .......... .......... ...NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CANAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUCACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGU -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAC-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCUC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CU...... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.vulneris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia vulneris. ACCESSION No information KEYWORDS No information. SOURCE Escherichia vulneris. ORGANISM Escherichia vulneris. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80734 BASE COUNT 362 a 325 c 461 g 282 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAACA-NN (--CU----- ---------- ---------- 241 --------UG -)CG-NUUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGN -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- NNN-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 N-NNG-C-UU -AA-C----- ---------- ---------- -----(---- -NNNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnC3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsC gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsC gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 3939431 to 3940971) legacy_attribute= CG Site No. 187 operon= rrsC gene isolate_name= MG1655 BASE COUNT 390 a 353 c 485 g 313 t 2835 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrsC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsC gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsC gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Burland,V.D., Plunkett,G.III., Daniels,D.L. and Blattner,F.R . TITLE DNA sequence and analysis of 136 kilobases of the Escherichia coli genome from 81.5 to 84.5 min.: Organizational symmetry around the origin of replication JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10328 operon= rrsC gene isolate_name= MG1655 BASE COUNT 390 a 353 c 484 g 312 t 2837 others ORIGIN 1 .......... .......... .......... ...AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CK-KUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnG2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnG gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnG gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80729 operon= rrnG gene isolate_name= PK3 BASE COUNT 358 a 327 c 451 g 279 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UNC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K15 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K15.. ACCESSION No information KEYWORDS No information. SOURCE clone K15. ORGANISM clone K15. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91530|g987805 BASE COUNT 82 a 75 c 117 g 67 t 4035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GAA |-GGUG-C-- 1201 AAG-CG-UAA UC-GGAA-UA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--G----- ---M-(KAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coli5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. C600. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. C600. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Sekiya,T. and Nishimura,S. TITLE Sequence of the gene for isoleucine trna-1 and the surrounding region in a ribosomal RNA operon of escherichia coli JOURNAL Nucleic Acids Res. 6, 575-592 (1979) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: K01057|g147942 (bases 1 to 521) isolate_name= C600 BASE COUNT 187 a 178 c 237 g 151 t 3623 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .....AGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCNUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG---A---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-U.... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... ......G--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-CG-AGA |---C|A--G 2161 GUNGC-UGCA UG|G-CUG-- UCG-U-A|-G C-U----G-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAGAGA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GACC CUUAC-G-AC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GAACCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnD2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. PK3 [gene=rrnD gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. PK3 [gene=rrnD gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80727 operon= rrnD gene isolate_name= PK3 BASE COUNT 357 a 326 c 452 g 281 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --NN-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnD3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsD gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsD gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 3424858 to 3426399) complement legacy_attribute= CG Site No. 186 operon= rrsD gene isolate_name= MG1655 BASE COUNT 388 a 354 c 487 g 313 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---CUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirrnD 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Plunkett,G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18997|g606010 (bases 207967 to 209508) complement legacy_attribute= CG Site No. 186 operon= rrsD gene BASE COUNT 388 a 354 c 487 g 313 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---CUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Haf.alvei2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hafnia alvei.. ACCESSION No information KEYWORDS No information. SOURCE Hafnia alvei. ORGANISM Hafnia alvei. REFERENCE 1 AUTHORS Albert,M.J., Alam,K., Islam,M., Montanaro,J., Rahaman,A.S., Haider,K., Hossain,M.A., Kibriya,A.K. and Tzipori,S. TITLE Hafnia alvei, a probable cause of diarrhea in humans JOURNAL Infect. Immun. 59 (4), 1507-1513 (1991) STANDARD No information REFERENCE 2 AUTHORS Ridell,J., Siitonen,A., Paulin,L., Mattila,L., Korkeala, H. and Albert,M.J. TITLE Hafnia alvei in stool specimens from patients with diarrhea and healthy controls JOURNAL J. Clin. Microbiol. 32 (9), 2335-2337 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z47360|g693931 NB: Haf.alvei/Haf.alvei2 differ by 10% of 314 bp in common Haf.alvei2 differs from E.coli by only 3.6% BASE COUNT 82 a 74 c 100 g 58 t 4062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.colirnG3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli str. MG1655 [gene=rrsG gene]. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli str. MG1655 [gene=rrsG gene]. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Blattner,F.R., Plunkett,G.,III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C .K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1474 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00096 (bases 2727636 to 2729178) complement legacy_attribute= CG Site No. 184 operon= rrsG gene isolate_name= MG1655 BASE COUNT 386 a 353 c 491 g 313 t 2833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--GCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|GGU-UG- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----GUU 1981 -UUC-A--(- GAGA-)-UGA -G-AAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS E.coliK12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Escherichia coli. ACCESSION No information KEYWORDS No information. SOURCE Escherichia coli. ORGANISM Escherichia coli. REFERENCE 1 AUTHORS Shen,W.-F., Squires,C.L. and Squires,C.L. TITLE Nucleotide sequence of the rrnG ribosomal RNA promoter region of Escherichia coli JOURNAL Nucleic Acids Res. 10, 3303-3313 (1982) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29364|g147363 (bases 3572 to 4248) operon= rrnG gene BASE COUNT 172 a 149 c 218 g 138 t 3699 others ORIGIN 1 .......... .......... .......... .UUAAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU--CUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--GCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GA --GUA-AAG( U----UAAUA -----C---) CUUU-GC-UC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UCUG A-UAC-UGGC A-AGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.3 ERWINIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.3 ERWINIA_GROUP. ORGANISM 2.14.3.15.3 ERWINIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.herbic3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia herbicola str. A702. ACCESSION No information KEYWORDS No information. SOURCE Erwinia herbicola str. A702. ORGANISM Erwinia herbicola. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A. and Wichman,H.A. JOURNAL Submitted to Molecular Biology and Evolution, 1994 STANDARD No information COMMENTS isolate_name= A702 BASE COUNT 289 a 267 c 362 g 228 t 3230 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....CG--- ---)------ -----GG--| --CUCU--C- A--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA N)-N----GA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --ACG-GGG( U----UAAUA -----A---) CCCU-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCG-UA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUA- UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C -)--C-AAGA 1921 A-CCUUA-CC UAC-NC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC ---GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-NCCGC AA-------- CGAG-C--NC AACCC-UU-A |-UN--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-N-CCG --GU(-GA-U AA)-ACC-G- --AGG-A-AG 2761 G-UN-GGG-A UG-ACN--UC -A-ACUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGN-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGN- ---------- AA-GCGGA-C CUCAC-AA-G -UG-N-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCACCGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.herbic5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia herbicola str. A702. ACCESSION No information KEYWORDS No information. SOURCE Erwinia herbicola str. A702. ORGANISM Erwinia herbicola. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24785|g406073 isolate_name= A702 BASE COUNT 199 a 180 c 243 g 163 t 3591 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......GC- AC--CAG-GC --|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA--C- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C -)--C-AAGA 1921 A-CCUUA-CC UAC-NC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC ---GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-NCCGC AA-------- CGAG-C--NC AACCC-UU-A |-UN--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-N-CCG --GU(-GA-U AA)-ACC-G- --AGG-A-AG 2761 G-UN-GGG-A UG-ACN--UC -A-ACUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGN-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGN- ---------- AA-GCGGA-C CUCAC-AA-G -UG-N-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCACCGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.herbico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia herbicola.. ACCESSION No information KEYWORDS No information. SOURCE Erwinia herbicola. ORGANISM Erwinia herbicola. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 363 a 332 c 465 g 296 t 2920 others ORIGIN 1 .......... .......... .......... ...NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--N AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- U-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CU---- 601 --(------- ---UCCG--- ---)------ -----GG--| -CCUCU--C- A--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -NCUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCNA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --AYG-GGG( U----UAAUA -----A---) CCCN-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUU-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -N-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----YUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-N AN-NNN---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACN-CN-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAC-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.herbic4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia herbicola str. 26SR6-2. ACCESSION No information KEYWORDS No information. SOURCE Erwinia herbicola str. 26SR6-2. ORGANISM Erwinia herbicola. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A., Wichman,H.A. and Orser,C .S. TITLE Unusual pattern of bacterial ice nucleation gene evolution JOURNAL Mol. Biol. Evol. 11, 911-920 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24784|g406072 isolate_name= 26SR6-2 BASE COUNT 175 a 164 c 229 g 150 t 3658 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ....GG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGCGUUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CG--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -A-----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-U--AGA |---C|A--- 2161 GU-GC-UGCA UG|--CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA CGU)-CCCUG CAC------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGGA--- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-N-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.herbic2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia herbicola str. 26SR6-2. ACCESSION No information KEYWORDS No information. SOURCE Erwinia herbicola str. 26SR6-2. ORGANISM Erwinia herbicola. REFERENCE 1 AUTHORS Edwards,A.R., Van Den Bussche,R.A. and Wichman,H.A. JOURNAL Submitted to Molecular Biology and Evolution, 1994 STANDARD No information COMMENTS isolate_name= 26SR6-2 BASE COUNT 277 a 258 c 356 g 222 t 3263 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| .....U--C- A--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-N---UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UU-C-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --AUG-UGG( U----UAAUA -----A---) CCGC-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG--AAUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUU-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGCGUUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CG--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -A-----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CUC-U--AGA |---C|A--- 2161 GU-GC-UGCA UG|--CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA CGU)-CCCUG CAC------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGGA--- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-N-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.amylvor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia amylovora str. EL01. ACCESSION No information KEYWORDS No information. SOURCE Erwinia amylovora str. EL01. ORGANISM Erwinia amylovora. REFERENCE 1 AUTHORS Chiou,C.-S. and Jones,A.L. TITLE Molecular basis of the high-level streptomycin resistance in Erwinia amylovora JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36466|g548112 isolate_name= EL01 BASE COUNT 156 a 142 c 205 g 114 t 3759 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --GAG-AGG( U----UAAUA -----A---) CCUC-CA-GC 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-CUG -UU-CC---- ---------- 1681 -(CCU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cit.freund 4376 bp RNA RNA 02-JUL-1998 DEFINITION Citrobacter freundii. ACCESSION No information KEYWORDS No information. SOURCE Citrobacter freundii. ORGANISM Citrobacter freundii. REFERENCE 1 AUTHORS Woese,C.R. TITLE rRNA Phylogeny of some gamma purple bacteria based upon 16S JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59291 BASE COUNT 368 a 332 c 463 g 294 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-NUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCNN-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCNA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGG( U----UAAUA -----A---) CCUC-AG-CC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCN-NUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UCCN N-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CNCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-NUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCN|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-N AG-NNN---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-N- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Coco.nuc_C 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cocos nucifera. ACCESSION No information KEYWORDS No information. SOURCE Cocos nucifera. ORGANISM Cocos nucifera. REFERENCE 1 AUTHORS Rohde,W., Kullaya,A., Mpunami,A. and Becker,D. TITLE Rapid and sensitive dignosis of mycoplasmalike organisms associated with lethal disease of coconut palm by a specifically primed polymerase chain reaction for the amplification of 16S rDNA JOURNAL Oleagineux 48, 319-322 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70783|g556698 common_name= coconut palm NB: sequence is probably of contaminant; 3% different from E .coli BASE COUNT 143 a 133 c 171 g 120 t 3809 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... ........A- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-CU A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUC. .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.4 WIGGLESWORTHIA_SYMBIONT_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.4 WIGGLESWORTHIA_SYMBIONT_GROUP. ORGANISM 2.14.3.15.4 WIGGLESWORTHIA_SYMBIONT_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Glosp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Aksoy,S. TITLE Wigglesworthia gen. nov. and Wigglesworthia glossinidia sp. nov., taxa consisting of the mycetocyte-associated, primary endosymbionts of tsetse flies JOURNAL Int. J. Syst. Bacteriol. 45, 848-851 (1996) STANDARD No information REFERENCE 2 AUTHORS Aksoy,S., Pourhosseini,A. and Chow,A. TITLE Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae JOURNAL Insect Mol. Biol. 4, 15-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37343|g565259 endosymbiont_of= Glossina palpalis NB: bases 141-166 not aligned well BASE COUNT 288 a 192 c 279 g 213 t 3404 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GUGC 121 G--GC-AU-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-GA (--AU----- ---------- ---------- 241 --------UU -)UC-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CUAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------AA 541 AU-------- -)-GAU---- ---------- ----UAAA-- ---GCAGGG- GA--UUAAAU 601 CA(AA----- --AUUUAU-- ---)---UUU GAUAUAA--| -CCUUG--C- G--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAA-GG) -C-UCACC-C A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CGC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CA 1021 --AG-GAA-- GA-A-AG-CA --AAC-AUG( C----UAAUA -----C---) CAUA-UU-UG 1081 ---------- -------U-G U-GA-CCUU- A-CUU-G-CA A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGCG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG--AG-GC -G|-GC-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAU A-AACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU G--AA-UU-- -------U|- ---------- ---------- ---------- 1681 -(UUC-GG)G ---------- ---------- ---------- ---------- ---------- 1741 ---------- --GC-(UAA- ---C)G-UG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 AAC-C---(G CAA)---G-G UU-AAAACGC -AAA-UGAAU UG-ACGGG-G -G-C-C---- 1861 --A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-GGUUA-CC UAC-UC-UUG ACA-UU|--- ---------U ---AGAG--- -AA----UUC 1981 -AGC-A--(- GAGA-)-UGC -U-UCAG--- UG-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UA-AAA |---C|A--C 2161 GU-G...... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Glosta 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Aksoy,S. TITLE Wigglesworthia gen. nov. and Wigglesworthia glossinidia sp. nov., taxa consisting of the mycetocyte-associated, primary endosymbionts of tsetse flies JOURNAL Int. J. Syst. Bacteriol. 45, 848-851 (1996) STANDARD No information REFERENCE 2 AUTHORS Aksoy,S., Pourhosseini,A. and Chow,A. TITLE Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae JOURNAL Insect Mol. Biol. 4, 15-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37342|g565258 endosymbiont_of= Glossina tachinoides BASE COUNT 337 a 239 c 340 g 266 t 3194 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GUGC 121 G--GC-AU-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-GG (--AU----- ---------- ---------- 241 --------UU -)UC-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-G C-CUAA---A -AGAG-G-GG 421 -GAC-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------AA 541 CU-------- -)-GAU---- ---------- ----UAAA-- ---GCAGGG- GA--CUAAAA 601 UU(AAAAUA- ---UUUA--- --U)-AUUUU AAUAAAG--| -CCUUG--C- G--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CGUA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCAC| UUUC-AG-CA 1021 --AG-GAA-- GA-A-AG-CA --AAU-AUG( C----UAAUA -----U---) CAUA-UU-UG 1081 ---------- -------U-G C-GA-CGUU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAU A-CACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA--)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UCG -UA-GA---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------UCU -GUGAU-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 AAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UU|--- ---------U ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UA-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GU- A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UU--UUGC-C AG-CGA---- ---------- ---------- ---A(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACAG.... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Glosau 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Aksoy,S. TITLE Wigglesworthia gen. nov. and Wigglesworthia glossinidia sp. nov., taxa consisting of the mycetocyte-associated, primary endosymbionts of tsetse flies JOURNAL Int. J. Syst. Bacteriol. 45, 848-851 (1996) STANDARD No information REFERENCE 2 AUTHORS Aksoy,S., Pourhosseini,A. and Chow,A. TITLE Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae JOURNAL Insect Mol. Biol. 4, 15-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37340|g565256 endosymbiont_of= Glossina austeni BASE COUNT 338 a 230 c 323 g 264 t 3221 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GUGC 121 G--GC-AU-C GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAA-GA (--UU----- ---------- ---------- 241 ---------U -)UC-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACA|-AU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CUAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAU---- ---------- ---------- ---------- ---AUC-(-- --------AA 541 AU-------- -)-GAU---- ---------- ----UAAA-- ---GCAGGG- GA--UUAAAU 601 CA(AA----- ---AUUUA-- ---)--UUUU GAUAUAA--| -CCUUG--C- G--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- ------C-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--C-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAA-- GA-A-AG-UA --AAU-ACG( C----UAAUA -----U---) CGUA-UU-UA 1081 ---------- -------U-A U-GA-CGUU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CG--GU--A) U-A-C--GA- |--GU----- 1201 GAG--GU-A- UC--GA---C -AU---GC|- -UAA--C-U- GCG-CAG-GC -G|-GU-U-- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UU-C CU-AGG-C(- UU-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAU A-AACUG-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA--)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUC AA-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UCG -UA-GA---- ---------- 1681 -(UUU-AU)C ---------- ---------- ---------- -------UGU -GAGAU-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 AAC-C---(G CAA)---G-C UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC GAC-UCGUUG ACA-UU|--- ---------U ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)UCGC -C-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AA---| CUC-UA-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UU--UUGG-C AG-CGA---- ---------- ---------- ----(---AC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA..... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wg.glossin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wigglesworthia glossinidia.. ACCESSION No information KEYWORDS No information. SOURCE Wigglesworthia glossinidia. ORGANISM Wigglesworthia glossinidia. REFERENCE 1 AUTHORS Aksoy,S. TITLE Wigglesworthia gen. nov. and Wigglesworthia glossinidia sp. nov., taxa consisting of the mycetocyte-associated, primary endosymbionts of tsetse flies JOURNAL Int. J. Syst. Bacteriol. 45, 848-851 (1996) STANDARD No information REFERENCE 2 AUTHORS Aksoy,S., Pourhosseini,A. and Chow,A. TITLE Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae JOURNAL Insect Mol. Biol. 4, 15-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37339|g565255 Former RDP Sids: sym.Glosmo endosymbiont_of= Glossina morsitans BASE COUNT 337 a 239 c 340 g 263 t 3197 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GUGC 121 G--GC-AC-G GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-GA (--UU----- ---------- ---------- 241 ---------U -)UC-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AU-CUGGG- G-A--UCU-A C-CUAA---A -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 CC-------- -)-GAU---- ---------- ----UAAA-- ---GUAGGG- GA--CUAAAU 601 CA(AAAU--- ---UUUA--- ---)-AUUUU GAUAAAG--| -CCUUG--C- G--CUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AC|----GA G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GCA A)-CCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GG-GAA-- GA-A-AG-UA --AAU-AUG( C----UAAUA -----C---) CAUG-CU-UA 1081 ---------- -------U-G GCGA-CGUU- ACGUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAU A-AACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUC AA-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UCG -UA-GA---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------UCU -GUGAU-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 AAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UU|--- ---------U ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AA---| CUC-UA-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UU--UUGC-C AG-CGA---- ---------- ---------- ----(---AC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA..... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Glosbr 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Aksoy,S. TITLE Wigglesworthia gen. nov. and Wigglesworthia glossinidia sp. nov., taxa consisting of the mycetocyte-associated, primary endosymbionts of tsetse flies JOURNAL Int. J. Syst. Bacteriol. 45, 848-851 (1996) STANDARD No information REFERENCE 2 AUTHORS Aksoy,S., Pourhosseini,A. and Chow,A. TITLE Mycetome endosymbionts of tsetse flies constitute a distinct lineage related to Enterobacteriaceae JOURNAL Insect Mol. Biol. 4, 15-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37341|g565257 endosymbiont_of= Glossina brevipalpis BASE COUNT 335 a 233 c 332 g 263 t 3213 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GUGC 121 G--GC-AC-G GU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGA-GA (--UU----- ---------- ---------- 241 --------UU -)UC-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- ACG|-GC--A AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUAA---A -AAAG-G-GG 421 -GAC-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----CAAA-- ---GCAGGG- GA--CUAAUA 601 UA(------- ---UACUU-- ---)-----U AUAUCAG--| -CCUUG--C- G--UUU---- 661 ----UUAG-- AUG---A-|A CCCAG----- -AU|----GA G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-UG) -C-UCACC-U A|-GGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----AA-C-- CAG-C|---C -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-AG-CA 1021 --GG-GAA-- GA-A-AG-UA --AAU-GUG( A----UAAUA -----C---) CAUA-UU-UA 1081 ---------- -------U-G U-GA-CGUU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCA-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-AGG-C(- UC-A)A-CCU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UAAU A-AACUA-GA GUA-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCC(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCAG- 1441 -C-C-GC(-G AA--)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 GCG--AA-AA CUGACG-CUC AU-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -CG-AG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CUC -GGGGU-UUU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 AAU-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UU|--- ---------U ---AAAG--- --A----U-U 1981 -AGC-A--(- GAGA-)-UGC -U-U-AG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AG---| CUU--A--AA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UU--UUGC-C AG-CGA---- ---------- ---------- ----(---AA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-A-AC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA..... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Camnhe 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Schroder,D., Deppiach,H., Obermayer,M., Krohne,G., Stackebrandt,E., Holidobler,B., Goebel,W. and Gross,R. TITLE Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization JOURNAL Mol. Microbiol. 21 (3), 479-489 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92550 symbiont_of= Camponotus herculeanus BASE COUNT 402 a 296 c 410 g 320 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....UUG-CA (--AGU---- ---------- ---------- 241 -------UUA -)UG-CAGCU CU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--A AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAG -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAC-AA-CU G--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 UA-U------ -)-GAC---- ---------- ----CAAA-- ---GUAGGG- GA--CUUUUU 601 UA(U------ ----UAA--- ---)----AU AAAAAAG--| -CCUUA--U- G--CCA---- 661 ----CCGG-- AUG---A-|A CCCAG----- -AU|----AG G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAU-AG) -C-CCACC-U A|-GGC-CA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UG 1021 --GG-GAA-- GA-A-CU-UA --GUA-UUG( C----UAAUA -----U---) CAAU-AU-UA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- ACG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UC-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUU-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACA-CUC AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UA-GA---- ---------- 1681 -(CUU-UG)A ---------- ---------- ---------- -------GCU -GUGAC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C A)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----UCU 1981 -UAU-A--(- GAAA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AA-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UA--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- AA-ACU-C(G 2881 -UGA)GAGC- ---------- AA-GCAAA-C CUCAC-AAAG -UA-C-GUC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCG-UGGA A--GU-GGG- UU-GC-AAAA -GAA-G-UAA 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Camnli 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Schroder,D., Deppiach,H., Obermayer,M., Krohne,G., Stackebrandt,E., Holidobler,B., Goebel,W. and Gross,R. TITLE Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization JOURNAL Mol. Microbiol. 21 (3), 479-489 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92551 symbiont_of= Camponotus ligniperda BASE COUNT 405 a 295 c 405 g 325 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....UUG-CA (--AU----- ---------- ---------- 241 -------UUA -)UG-CAGCU CU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-GC--A AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAA -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 UA-C------ -)-GAC---- ---------- ----CAAA-- ---GUAGGG- GA--CUUUAU 601 UA(UU----- ---AAUU--- ---)---AAU AAGAAAG--| -CCUUA--U- A--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----AG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-CA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UG 1021 --GG-GAA-- GA-A-UU-UA --AUA-UUG( C----UAAUA -----U---) CAAC-AU-UA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-UA C-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- ACG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UC-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUU-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACA-CUC AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UA-GA---- ---------- 1681 -(CUU-UG)A ---------- ---------- ---------- -------GCU -GUGAC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C A)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----UCU 1981 -UAU-A--(- GAAA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AA-CGA---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-ACG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UA--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- AA-UCU-C(G 2881 -UGA)GAGU- ---------- AA-GCAAA-C CUCAU-AAAG -UA-C-GUC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-GGG- UU-GC-AAAA -GAA-G-UGA 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Camnru 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Schroder,D., Deppiach,H., Obermayer,M., Krohne,G., Stackebrandt,E., Holidobler,B., Goebel,W. and Gross,R. TITLE Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization JOURNAL Mol. Microbiol. 21 (3), 479-489 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92552 symbiont_of= Camponotus rufipes BASE COUNT 423 a 281 c 408 g 354 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .........A UAAUUCU-UA (--UUAAGAA AUU------- ---------- 241 --------UU -)UA-GGAUU UGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----UUUGU CUG|-GC--A AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAA -GU-CUGGG- G-A--UCU-A C-CCAA---G -GGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 UG-A------ -)-GAU---- ---------- ----UAAA-- ---GUAGGG- GA--CUUAUA 601 UA(UAGU-UG CAUUUAGUUU AUU)-AUUAU AUGUGGG--| -CCUUA--U- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AU|----AG G--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-U A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UG 1021 --GG-GAA-- GA-A-UU-UA --AGA-UUG( C----UAAUA -----U---) CAAU-AU-UA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAU A-AGCUA-GA GUU-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-CGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -CG-AC---- ---------- 1681 -(CAU-UG)A ---------- ---------- ---------- -------GUU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C A)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----CUA 1981 -CAU-A--(- GAGA-)-UAU -G-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AA-CGA---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UA--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-U(G 2881 -CGA)AAGC- ---------- UA-GCAAA-U CUCAU-AAAG -UA-C-GUC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGA 3121 G-UAG-U-UU -AA-CCUU-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAGG-G-C A-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Camnfl 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Schroder,D., Deppiach,H., Obermayer,M., Krohne,G., Stackebrandt,E., Holidobler,B., Goebel,W. and Gross,R. TITLE Intracellular endosymbiotic bacteria of Camponotus species (carpenter ants): systematics, evolution and ultrastructural characterization JOURNAL Mol. Microbiol. 21 (3), 479-489 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92549|g1212813 symbiont_of= Camponotus floridanus NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 410 a 281 c 410 g 348 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... AUAAUAC-CU (---U----- ---------- ---------- 241 --------UU -)AG-GUUUU GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----UUUGU CUG|-GC--A AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAA -GU-CUGGG- G-A--UCU-G C-CCAA---G -GGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 UG-A------ -)-GAU---- ---------- ----UAAA-- ---GUAGGG- GA--CUUGUA 601 UA(UAAUG-- --UUUUAUU- ---)UAUUAU AUGUAGG--| -CCUUA--U- G--CCA---- 661 ----UUGG-- AUG---A-|A CCCAG----- -AU|----AG G--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-U A|-GGC-AA- CGA------- -----UC-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCUA UACC-GU-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AA-UG 1021 --GG-GAA-- GA-A-UU-UA --AGG-UUG( C----UAAUA -----U---) CAAU-UU-UA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-A-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-UC-C CU-GAG-C(- UU-A)A-CUU -AG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAU A-AGCUA-GA GUU-----UC G-UA-GAGGG AGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUCCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UG-AC---- ---------- 1681 -(CAU-UG)A ---------- ---------- ---------- -------GUC -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-AU-GGU -UUAAUU-CG -(AUGCAA-C A)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----CUG 1981 -UGU-A--(- GAGA-)-UAU -G-CAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AA-CGA---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-AG -UA--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-U(G 2881 -CGA)AAGU- ---------- UA-GCAAA-U CUCAU-AAAG -UA-C-GUC- UUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UGA 3121 G-UAG-U-UU -AA-CCUU-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A AGGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Glospa 4376 bp RNA RNA 02-JUL-1998 DEFINITION secondary endosymbiont. ACCESSION No information KEYWORDS No information. SOURCE secondary endosymbiont. ORGANISM secondary endosymbiont. REFERENCE 1 AUTHORS Beard,C.B. and Woese,C.R. TITLE Genetic transformation and phylogeny of bacterial symbionts from tsetse JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99060 symbiont_of= secondary endosymbiont of Glossina pallidipes (tsetse) BASE COUNT 367 a 334 c 473 g 305 t 2897 others ORIGIN 1 .......... .......... .......... NNUUAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- A--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAA-- GA-A-GG-CG --UUA-GCG( U----UAACA -----G---) CGCU-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGU- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-CAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUNACG-CUC AG-G------ -------UA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-NUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-UCU-C(G 2881 -CGA)GAGU- ---------- CA-GCGGA-C CUCAC-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCU-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Sitoz2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Campbell,B.C., Bragg,T.S. and Turner,C. TITLE Phylogeny of symbiotic bacteria of four weevil species (Curculionidae:Coleoptera) based on analysis of ribosomal DNA JOURNAL Insect Biochem. Molec. Biol. 22, 415-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85270 symbiont_of= Sitophilus zeamais NB: removed 7 base repeat after 152r (E.coli) 687r to 737r messed up, removed (replaced by "missing data") removed -> GAGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACUGGUGGCG 1008r - 1022r removed (read double bands ?) removed -> UGGCAAUUGGCAAAGAUGCCU BASE COUNT 359 a 327 c 452 g 296 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-A--C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--UU----- ---------- ---------- 241 -------UGU -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAUAAA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 UAUAAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- A--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GA-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G AUGA)-GGGU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC--G-CG 1021 --GG-GAG-- GA-A-GG-CG --GUG-GCA( U----UAAUA -----G---) CGCC-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA ---A--GAAG ---------U 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGUGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UC G-UA-GAGGA GGG-U|AGAA 1381 UU-CCAGGU- GU.....(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... ....CCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGAC--CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|A -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G ---C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CU. 1981 ....-...(- .....).... ....UGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUC A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 A-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-UCU-C(G 2881 -CGA)GAGU- ---------- CA-GCGGA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UACAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GA-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CCC--- ---------- ---------- -----(---- -UUC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGG..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Sito.z 4376 bp RNA RNA 02-JUL-1998 DEFINITION endosymbiont of. ACCESSION No information KEYWORDS No information. SOURCE endosymbiont of. ORGANISM endosymbiont of. REFERENCE 1 AUTHORS Campbell,B.C., Bragg,T.S. and Turner,C. TITLE Phylogeny of symbiotic bacteria of four weevil species (Curculionidae:Coleoptera) based on analysis of ribosomal DNA JOURNAL Insect Biochem. Molec. Biol. 22, 415-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M85269 endosymbiont_of= Sitophilus zeamais NB: IDENT:general enteric BASE COUNT 376 a 339 c 475 g 301 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- A--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UUU--(G UAGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-GCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --GUG-GCA( U----UAAUA -----G---) CGCC-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA ---A--GAAG ---------U 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGUGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCAU- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-GGCUA-GA GUC-----UC G-UA-GAGGA GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGA--)---- -GU-AGAA-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGGG GCCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -AA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCC -GUGGC-UUU 1741 CG--GA---- --SS-(UAA- ---C)G-CG- UUAA-AUCGA C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G ---C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -GGC-A--(- AAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGG |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUC A)-AAUGU-U 2221 GG-GG(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 A-AA-CU-C- A-AAU-UA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -UA--CAAAG AGA-A-G-C- GA-UCU-C(G 2881 -CGA)GAGU- ---------- CA-GC-GA-C CUCAU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UACAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GA-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GCG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.5 SERRATIA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.5 SERRATIA_ASSEMBLAGE. ORGANISM 2.14.3.15.5 SERRATIA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Acrt.S 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont S. ACCESSION No information KEYWORDS No information. SOURCE symbiont S. ORGANISM symbiont S. REFERENCE 1 AUTHORS Unterman,B.M., Baumann,P. and McLean,D.L. TITLE Pea aphid symbiont relationships established by analysis of 16s rRNAs JOURNAL J. Bacteriol. 171, 2970-2974 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M27040 symbiont_of= symbiont S of Acyrthosiphon pisum NB: IDENT:general enteric BASE COUNT 397 a 345 c 489 g 311 t 2834 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGCG-G-GG 421 -GAU-AA-CU A--------- ------GU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -GU|----AG G--AUUA-G- CUG-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- AA-A-GG-GU --AAU-GUG( U----UAAUA -----A---) GACA-UU-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UC-A)A-CGU -GG-G-AAC- 1321 -GGCA-UUUG A-GAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -CG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGG -GUGGC-UUC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-GAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAC-AAAG -UA-C-GUA- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S13 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S13. str. S13. ACCESSION No information KEYWORDS No information. SOURCE str. S13. str. S13. ORGANISM str. S13. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31492|g1143142 isolate_name= S13 BASE COUNT 213 a 191 c 268 g 176 t 3528 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GAG |-GGUG---- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 NG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--NC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGU-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGN-C CUCAU-AAAG -UA-U-GUC- GGAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GN-AGN-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGU...... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Enb.spHC_B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Enterobacter sp. ORGANISM Enterobacter sp. REFERENCE 1 AUTHORS Chin,H.G., Toze,R.S. and Franzmann,P.D. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U39556|g1073242 BASE COUNT 376 a 340 c 469 g 305 t 2886 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUA-AGG( U----UAAUA -----A---) CCUU-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGNG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--NC ANCCC-UU-A |-UC--CUU- 2281 UG--UUNC-C AG-CGN---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-N-CNN --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-N-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN106 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN106.. ACCESSION No information KEYWORDS No information. SOURCE clone UN106. ORGANISM clone UN106. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63592 BASE COUNT 75 a 63 c 102 g 53 t 4083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(GUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-C... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN34 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN34.. ACCESSION No information KEYWORDS No information. SOURCE clone UN34. ORGANISM clone UN34. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63612 BASE COUNT 76 a 63 c 99 g 53 t 4085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGC- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- UU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-AUGU C--GA-C... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN92 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN92.. ACCESSION No information KEYWORDS No information. SOURCE clone UN92. ORGANISM clone UN92. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63639 BASE COUNT 76 a 63 c 99 g 53 t 4085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-C... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS K.pneumon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Klebsiella pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Klebsiella pneumoniae. ORGANISM Klebsiella pneumoniae. REFERENCE 1 AUTHORS Cilia,V., Lafay,B. and Christen,R. TITLE Sequence heterogeneities among 16S ribosomal RNA sequences, and their effect on phylogenetic analyses at the species level JOURNAL Mol. Biol. Evol. 13, 451-461 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80684 BASE COUNT 352 a 345 c 463 g 283 t 2933 others ORIGIN 1 .......... .......... .......... ...NAANUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NNGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CN-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GG-GAAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --UUA-AGG( U----UAAUA -----A---) CCUU-GG-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GCGGG GGG-U|GGAA 1381 UU-CCAGGU- GUC-GCG(-G UGAAA)-UGC -GU-CGAG-A UC-UGGAGG- AAUC-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC CG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-CAA-CA- -GG(AUUC-G AUCC)-CCU- ----GGUC-G UC----CAC- G-CA-GC--C 1621 AAC-G-AUGU C--GA-UC-- -------C|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GCG(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C--C--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCA-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-NC-ANAA -GNA-G-UNG 3121 G-UNG-C-CN -NA-UC---- ---------- ---------- -----(---- -ACCUC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGGU--G-C .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS K.pneumoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Klebsiella pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Klebsiella pneumoniae. ORGANISM Klebsiella pneumoniae. REFERENCE 1 AUTHORS ,S., Reetz,K., Beimfohr,C., Brockmann,E., Kirchhof,G., Dorn ,S., Bachleitner,M., Klugbauer,N., Springer,N., Lane,D., Nietupsky,R., Weizenegger,M. and Schleifer,K.H. Ludwig,W., Rossello-Mora,R., Aznar,R., Klugbauer,S., Spring TITLE proteobacteria Comparative sequence analysis of 23S rRNA from JOURNAL Syst. Appl. Microbiol. 18, 164-188 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87276|g1165114 BASE COUNT 385 a 351 c 486 g 310 t 2844 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --AUG-AGG( U----UAAUA -----A---) CCUC-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCCUG-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UC-AAG|U CGG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGGC A-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU-UGG AUCACCUCCU 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosDP 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. DP. str. DP. ACCESSION No information KEYWORDS No information. SOURCE str. DP. str. DP. ORGANISM str. DP. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20275|g860664 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= DP BASE COUNT 381 a 354 c 462 g 311 t 2868 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--U- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C AGG)--GUCC -AGA-C-CCC -(UACG)--G GAG-GC-AC- C-A---GU-G 901 GGG-AAUAUU C-CCCAAU-- GG-CC-(CCA A)-GCC-UGA UUCA|-ACCA UCCC-CC-UU 961 U-U-UU-G-A A-GAA--G-C CC(--UU-CG --)GG-UUGU AAA--AUAC| UUUC-AC-CG 1021 --AG-GAG-- GA-A-GG-GU --UCA-AUG( U----UAAUA -----C---) CUCU-GU-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAC ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GCAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAU-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -CGC-U--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-CCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-A--GC AACCC-UU-A |-UC--CUU- 2281 UG--U-GC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosIN 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. IN. str. IN. ACCESSION No information KEYWORDS No information. SOURCE str. IN. str. IN. ORGANISM str. IN. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20276|g860665 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= IN BASE COUNT 380 a 354 c 468 g 308 t 2866 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGAAGG-AG (--ACU---- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-C AAG)--GUCC -AGA-C-CCC -(UACG)--G GAG-GC-AC- C-A---GU-G 901 GGG-AAUAUU C-CCCAAU-- GG-CC-(CCA A)-GCC-UGA UGCA|--CCA UCCC-CC-UU 961 U-U-UU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AC-CG 1021 --AG-GAG-- GA---GG-UG --GUU-GAA( AC---UUAUA -----C---) CGUC-AU-CC 1081 ---------- -------A-U U-GC-CGUU- A-CUC-G-CA G-AA--GAAC ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCACC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 CCG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -G-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -CU)-CCCCC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 GG--GUGG-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GG-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosCA 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. CA. str. CA. ACCESSION No information KEYWORDS No information. SOURCE str. CA. str. CA. ORGANISM str. CA. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20274|g860663 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= CA BASE COUNT 382 a 354 c 470 g 303 t 2867 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGAAGG-AG (--ACU---- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-GCU--(G --GA)-GGAU ----GA-C-- CAG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-C AAG)--GUCC -AGA-C-CCC -(UACG)--G GAG-GC-AC- C-A---GU-G 901 GGG-AAUAUU C-CCCAAU-- GG-CC-(CCA A)-GCC-UGA UGCA|-GCCA UCCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UG-CG --)GG-UUGU AAA--GUAC| UUUC-AC-CG 1021 --AG-GAG-- CA-A-GG-GU --GUU-GAA( C----UAAUA -----C---) CGUC-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UCAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 CCC--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CC- -UC(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -ACC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--U-GC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ser.marces 4376 bp RNA RNA 02-JUL-1998 DEFINITION Serratia marcescens. ACCESSION No information KEYWORDS No information. SOURCE Serratia marcescens. ORGANISM Serratia marcescens. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59160 ATCC 13880 = DSM 30121 BASE COUNT 385 a 342 c 472 g 312 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ANGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCN-GN-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-UG --GUG-AGC( U----UAAUA -----C---) GCUC-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-N AG-CNN---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACN-GGGG.. 3301 .......... GUAA-CAAGG UAACC-G... .(.GA-A)CC UG.......G AUCACCUCCU 3361 UA..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S26r 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S26r. str. S26r. ACCESSION No information KEYWORDS No information. SOURCE str. S26r. str. S26r. ORGANISM str. S26r. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31498|g1143144 isolate_name= S26r BASE COUNT 219 a 188 c 267 g 184 t 3518 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG---- 1201 ANN-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-NUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S26 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S26. str. S26. ACCESSION No information KEYWORDS No information. SOURCE str. S26. str. S26. ORGANISM str. S26. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31497|g1143143 (bases 277 to 859) isolate_name= S26 BASE COUNT 212 a 187 c 261 g 181 t 3535 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ....CGUU-A UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------G|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-UG- UUAA-AUCGA C|C|G-NCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UNCA UG|G-CUG-- UCG-CCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(GUA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MS-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. MS-1. str. MS-1. ACCESSION No information KEYWORDS No information. SOURCE str. MS-1. str. MS-1. ORGANISM str. MS-1. REFERENCE 1 AUTHORS Sharma,P.K. and McCarty,P.L. TITLE Isolation and characterization of a facultatively aerobic bacterium that reductively dehalogenates tetrachloroethene to cis-1,2-dichloroethene JOURNAL Appl. Environ. Microbiol. 62, 761-765 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L43508|g1146132 geog_source= Victoria, TX biol_source= PCE-contaminated site isolate_name= MS-1 BASE COUNT 119 a 106 c 154 g 85 t 3912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -CGAC-GC-- UGGC-GGC-A -GGC-CN--A ACAC-AUNAA A-CUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G ACGG-GCGG- 361 -A-CG-GN-U GANU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCU--U- G--NCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-N|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CG --UGG-AGG( U----UAAUA -----A---) CCUC-AU-CG 1081 ---------- -------A-G U-GA-CGUU- A-CUC-G-CA G-NA--GAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Er.carotov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erwinia carotovora subsp. carotovora ATCC 15713. ACCESSION No information KEYWORDS No information. SOURCE Erwinia carotovora subsp. carotovora ATCC 15713. ORGANISM Erwinia carotovora. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59149 ATCC 15713 = ICMB 5702 BASE COUNT 378 a 326 c 464 g 303 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- N-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--NC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCU--C- G--CNA---- 661 ----UNNG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCN-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CG --GUA-AGG( U----UAAUA -----A---) CCUU-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCA A-AAC-UGAC A-GGCUA-GA GUC-----UU G-UA-GAGGG GNG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -GGU-A--(- GAGA-)-UAC -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-N AG-NNA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C NUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-NG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.BEV 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. BEV. str. BEV. ACCESSION No information KEYWORDS No information. SOURCE str. BEV. str. BEV. ORGANISM str. BEV. REFERENCE 1 AUTHORS Campbell,B.C. and Purcell,A.H. TITLE Phylogenetic affiliation of BEV, a bacterial parasite of the leafhopper Euscelidius variegatus, based on 16S rDNA sequences JOURNAL Curr. Microbiol. 26, 37-41 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z14096 isolate_name= BEV BASE COUNT 381 a 334 c 480 g 303 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AGU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --GUA-AGG( U----UAAUA -----A---) CCUU-GC-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-GAAAC- 1321 -UGCA-UUCA A-AAC-UGGC A-AGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- U-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCUG G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAAGUG -AAA-UGAAU UG-A-CGG-G -G-C-C---G 1861 CUA--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 --CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCG-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-C-GUC- GUAGUCCG-A 2941 U-UGGAGUG- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.6 PROTEUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.6 PROTEUS_GROUP. ORGANISM 2.14.3.15.6 PROTEUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A47t 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91470 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 84 a 65 c 118 g 75 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GGGC- NNG-UAG-GC -G|-GC-CU- 1261 U-CU-AAG|U CAG---ACGU G-AAA-G--- CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -GCGA-UUCG A-AAC-UGGG A-AGCUU-GA GUA-----UC G-GA-GGGGA AAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- --S--(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Bemit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Clark,M.A., Baumann,L., Munson,M.A., Baumann,P., Campbell,B .C., Duffus,J.E., Osborne,L.S. and Moran,N.A. TITLE The eubacterial endosymbionts of whiteflies (Homoptera: Aleyrodoidea) constitute a lineage distinct from the endosymbionts of aphids and mealybugs JOURNAL Curr. Microbiol. 25, 119-123 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11926 symbiont_of= Bemisia tabaci (sweetpotato whitefly) BASE COUNT 371 a 324 c 470 g 294 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGU-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AU-C GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------G UGAGCAC-AG (--UU----- ---------- ---------- 241 --------UA -)CU-GAGUU CAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAA -GU-CUGGG- A-A--UCU-G G-CCGA---C -GGAG-G-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGCA-G--C UAAUACC-GC 481 AU-GAA---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCG---- 661 ----UCGG-- AUG---A-|G CCCAG----- -AU|----GA G--AUUA-G- CUG-G---UA 721 GG-UA-GG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----AG-C-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCCA UGCC-AC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GC-GA --UAA-AUG( C----CAAUA -----C---) CAUU-UA-UU 1081 ---------- -------U-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- AUG-UAG-GC -G|-GU-GA- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAU- 1321 -GGCA-UUUG A-AAC-UGGG U-CGCUA-GA GUU-----UU C-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 AGA--AA-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -CG-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -GUGGC-GUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CUU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CUG 1981 --CC-A--(- GAGA-)-UGC -G-CAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 UG--UUGC-C AU-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAGG GAU---G-C- GA-CCC-U(G 2881 -CAA)GGGC- ---------- AA-GCGGA-A CUCAG-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosAM 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. AM. str. AM. ACCESSION No information KEYWORDS No information. SOURCE str. AM. str. AM. ORGANISM str. AM. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20273|g860662 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= AM BASE COUNT 390 a 334 c 466 g 316 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGU 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUGGG- G-A--UCU-G C-CUGA---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--AC---- 601 --(------- ---UUCG--- ---)------ -----GU--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGUU ----GA-U-- CAG-C|C-AC -CCUGG-G-A 841 (CUUA-GA-C ACG)--GGCC -AGA-C-UCC -(UAC-)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-CCCA UUCC-CC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GG-GAG-- GA-A-GG-CG --UUG-AUG( C----UAAUA -----U---) CAUC-AA-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCUA A-GAC-UGGU C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CAU-GA)- ---------- ---------- ---------- -------GGA -GUGGU-UUC 1741 CG--GA---- --GU-(UAA- ---C)G-CG- UUAA-AUCGA C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G AAA)---G-G UU-AAAACUC -AAU-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAAA-C G)--CGACGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUG 1981 -AGC-A--(- GAGA-)-UGC -U-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- CCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAC -GU)-CCCGA AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--GUGC-C AG-CAG---- ---------- ---------- ---U(---UC ---GGC--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----C-G|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGCC-G-UA -UA--CAACG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -ACA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGUCC- GUC-ACA--- --ACA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosOR 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. OR. str. OR. ACCESSION No information KEYWORDS No information. SOURCE str. OR. str. OR. ORGANISM str. OR. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20278|g860667 isolate_name= OR BASE COUNT 386 a 344 c 461 g 315 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---G-GA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUGGG- G-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--AC---- 601 --(------- ---UUCG--- ---)------ -----GU--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- A-A---GU-G 901 GGG-AAUAUU C-ACCAUU-- GG-GC-(CCA A)-GCC-UGA UUCA|-CCAU UCCC-CC-UU 961 G-U-AU-G-A A-GAA--G-C CC(--UU-AG --)GG-UUUU UAA--CUAC| UUUC-AG-UC 1021 --GG-GAG-- GA-A-GG-CG --UUG-AUG( C----UAAUA -----U---) CAUC-AA-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCUA A-GAC-UGGU C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -UU(CUUA-G AUAC)-CCU- ----GGCA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CUG 1981 -AGC-A--(- GAGA-)-UGC -U-UAGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-A-(UUAA -GU)-CCCGG AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--GUGC-C AG-CGG---- ---------- ---------- ---U(---CC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CC-|G 2701 G-AA-CU-C- A-AAC-GG-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGCC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosSM 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SM. str. SM. ACCESSION No information KEYWORDS No information. SOURCE str. SM. str. SM. ORGANISM str. SM. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20279|g860668 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= SM BASE COUNT 392 a 328 c 471 g 315 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CAC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--AC---- 601 --(------- ---UUCG--- ---)------ -----GU--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|--CCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-UU 1021 --GG-GAG-- GA-A-GG-CG --UUG-AUG( C----UAAUA -----U---) CAUC-AG-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCUA A-GAC-UGGU A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UAG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-C-C---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACCCG- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)-C UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.DrosME 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ME. str. ME. ACCESSION No information KEYWORDS No information. SOURCE str. ME. str. ME. ORGANISM str. ME. REFERENCE 1 AUTHORS Miller,S.G. TITLE Bacterial Entomopathogens from the Drosophila paulistorum Semispecies Complex JOURNAL J. Invertebr. Pathol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20277|g860666 legacy_attribute= lab_host=Heliothis virescens specific_host= Drosophila paulistorum isolate_name= ME BASE COUNT 386 a 333 c 470 g 317 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UC 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--AC---- 601 --(------- ---UUCG--- ---)------ -----GU--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGUU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-UCCA UGCC-GC-GU 961 G-U-AU-G-U A-G-A--G-G CC(--CU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GG-GAG-- GG-A-GG-CG --UUG-AUG( C----UAAUA -----U---) CAUC-AG-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-AC -G|-GU-UG- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCUA A-GAC-UGGU A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-CC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CG----- ---------- ---------- ---G(---UU ---AUG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACCCG- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGCC-G-UA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGAA-A CUCAU-AAAG -UA-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)-C UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS P.vulgaris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Proteus vulgaris. ACCESSION No information KEYWORDS No information. SOURCE Proteus vulgaris. ORGANISM Proteus vulgaris. REFERENCE 1 AUTHORS Stackebrandt,E. and Hensiek,N. JOURNAL Nucleic Acids Res. In press (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X07652 BASE COUNT 402 a 336 c 478 g 327 t 2833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-AUGGG- G-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GCAGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUUG--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-AA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-UG --AUA-AAG( U----UAAUA -----C---) CUUU-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UCUG A-AAC-UGGU U-GGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|A -GA-GG-UUG -UG-GU---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------ACU -GUGGC-UUC 1741 UG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGCG--- -AA----UCC 1981 -UUU-A--(- GAGA-)-UAG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ars.nasoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arsenophonus nasoniae str. SKI4. ACCESSION No information KEYWORDS No information. SOURCE Arsenophonus nasoniae str. SKI4. ORGANISM Arsenophonus nasoniae. REFERENCE 1 AUTHORS Gherna,R.L., Werren,J.H., Weisburg,W.G., Cote,R., Woese,C.R., Mandelco,L. and Brenner,D.J. TITLE Arsenophonus nasoniae gen. nov., sp. nov., the causative agent of the son-killer trait in the parasitic wasp Nasonia vitripennis JOURNAL Int. J. Syst. Bacteriol. 41, 563-565 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M90801 isolate_name= SKI4 NB: Werren et al. Science 231:990-2 (1986) kills male wasps BASE COUNT 377 a 312 c 467 g 307 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--N AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GU-AUGGG- G-A--UCU-G C-CNNA---A -GGCG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 AG-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCU--- ---)------ -----GG--| -CCUCA--C- A--CCU---- 661 ----UCGG-- AUG---A-|A CCCAU----- -AU|----GA G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCNA UGCN-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-UC 1021 --GU-GAG-- GA-A-GG-UG --UUA-AGG( U----UAAUA -----A---) GCUU-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GCG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 A-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -GGCA-UUCA A-GAC-UGGU U-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCNG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------UG- C-NNAA-GC- GU-GGN-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GU---- ---------- 1681 -(CAA-GA)- ---------- ---------- ---------- -------ACU -GUGGC-CUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CNU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UUU-A--(- GAGA-)-UAG -A-GGCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CNA---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG AGA-G-G-C- GA-GCC-U(G 2881 -CGA)GGGG- ---------- AA-GCGGA-A CUCAG-AAAG -UA-C-GUC- GAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xen.bovien 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xenorhabdus bovienii. ACCESSION No information KEYWORDS No information. SOURCE Xenorhabdus bovienii. ORGANISM Xenorhabdus bovienii. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82252|g861161 BASE COUNT 374 a 345 c 481 g 295 t 2881 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-N C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CA --ACA-GCG( U----AAAUA -----G---) CGCU-GU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCUA A-AAC-UGGU U-GACUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----UUU 1981 -GCU-G--(- GAGA-)-CAG -C-GAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xen.poinar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xenorhabdus poinarii. ACCESSION No information KEYWORDS No information. SOURCE Xenorhabdus poinarii. ORGANISM Xenorhabdus poinarii. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82253|g861163 BASE COUNT 370 a 341 c 484 g 298 t 2883 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GGG------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAA-AG (--CG----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGCG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 UG-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --UNA-NCC( U----GAAUA -----A---) GGUU-GG-CG 1081 ---------- -------U-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCUA A-GAC-UGGU U-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUANUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -G-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xen.nemph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xenorhabdus nematophilus.. ACCESSION No information KEYWORDS No information. SOURCE Xenorhabdus nematophilus. ORGANISM Xenorhabdus nematophilus. REFERENCE 1 AUTHORS Puetz,J., Meinert,F., Wyss,U. and Ehlers,R.U. TITLE Development and application of oligonucleotide probes for molecular identification of Xenorhabdus species JOURNAL Appl. Environ. Microbiol. 56, 181-186 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53188 Former RDP Sids: Xen.namato BASE COUNT 298 a 286 c 394 g 240 t 3158 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-A -GGC-CU--A ACAC-AUGCU A-GUC-GGAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NNNNU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U NAGU---NAU -GU-CUUGG- U-A--UUU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUN-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 GG-------- -)-GAG---- ---------- ----UUAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUN---A-|A CCCGG----- -AU|----NG G--AUUA-G- CUN-G---UA 721 GG-CG-GG-( GU-GAU-UG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CG 781 U-NG-C-UN| -G-UCU--(G -AGA)-GGAU ----UA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AN- U-U---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCG-GC-GU 961 G-U-AU-G-A A-GAA--G-G CN(--NN-CG --)GG-UUGU AAA--GUCC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --UNA-GUC( U----NAACA -----G---) GGCU-UA-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCC -GG-N-NAC- 1321 -GGCA-UCCA A-GAC-UNGU U-GGCUN-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-N AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUN AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUN -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC .........C 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGNGNNC 1801 GGC-C---(G CNA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUC 1981 -GGC-A--(- GAGA-)-UGC -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UN-AGA |---C|A--G 2161 GU-GC-UGCA UN|G-CUN-- UCG-UCA|-G C-U---CG-U |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(.GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A AG-ACG--UC -U-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-GAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UN -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCG.... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xen.nemphl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xenorhabdus nematophilus. ACCESSION No information KEYWORDS No information. SOURCE Xenorhabdus nematophilus. ORGANISM Xenorhabdus nematophilus. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82251|g861162 BASE COUNT 371 a 347 c 483 g 293 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 GG-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --UAA-GUC( U----GAAGA -----G---) GGCU-UA-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -GGCA-UCCA A-GAC-UGGU U-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-CUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UNC 1981 -GGC-A--(- GAGA-)-UGC -C-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---N(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-C- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CUCAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Xen.beddng 4376 bp RNA RNA 02-JUL-1998 DEFINITION Xenorhabdus beddingii. ACCESSION No information KEYWORDS No information. SOURCE Xenorhabdus beddingii. ORGANISM Xenorhabdus beddingii. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82254|g861160 BASE COUNT 372 a 344 c 481 g 298 t 2881 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GGGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CCGA---G -AGCG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-CG --UGG-ACC( U----GAAUA -----C---) GGUU-CA-CG 1081 ---------- -------A-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -GGCA-UCUA A-GAC-UGGU U-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUANUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGC -G-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGA-A-G-C- GA-CCU-C(G 2881 -CGA)GGGC- ---------- AA-GCGGA-A CUCAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UCG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pr.lumines 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhabdus luminescens. ACCESSION No information KEYWORDS No information. SOURCE Photorhabdus luminescens. ORGANISM Photorhabdus luminescens. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82248|g861082 BASE COUNT 378 a 344 c 486 g 291 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-CG (--CU----- ---------- ---------- 241 --------UG -)CG-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-C C-CCGA---G -GGCG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CCU--- 601 --(------- ---GAAA--- ---)------ ----GGG--| -CCUCA--C- G--CCG---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --UCA-GCU( U----GAACA -----G---) AGCU-GA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAU- 1321 -GGCA-UCUA A-GAC-UGGU U-GGCUG-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GCU -GUGGC-UUC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAC 1981 -CUC-A--(- GAGA-)-UGA -G-GUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUGAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GA -UA--CAAAG UGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CACAC-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UCG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GA-CC A-CUUU-GUG GCU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pr.lumine2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhabdus luminescens. ACCESSION No information KEYWORDS No information. SOURCE Photorhabdus luminescens. ORGANISM Photorhabdus luminescens. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82249|g861083 BASE COUNT 377 a 339 c 489 g 291 t 2880 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-CG (--CU----- ---------- ---------- 241 --------UG -)CG-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-N C-CCGA---G -GGUG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CCU--- 601 --(------- ---GAAA--- ---)------ ----GGG--| -CCUCA--C- G--CCC---- 661 ----GUGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --AUG-GCC( U----GAAGA -----G---) GGCG-AU-AG 1081 ---------- -------C-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCCA A-GAC-UGGU U-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUG-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUAAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GA -UA--CAAAG UGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AN)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UCG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pr.lumine3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Photorhabdus luminescens str. Ehlers HSH2. ACCESSION No information KEYWORDS No information. SOURCE Photorhabdus luminescens str. Ehlers HSH2. ORGANISM Photorhabdus luminescens. REFERENCE 1 AUTHORS Rainey,F.A., Ehlers,R.U. and Stackebrandt,E. TITLE Inability of the polyphasic approach to systematics to determine the relatedness of the genera Xenorhabdus and Photorhabdus JOURNAL Int. J. Syst. Bacteriol. 45, 379-381 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82250|g861085 biol_source= nematode Heterorhabditis megidis HSH2 isolate_name= Ehlers HSH2 BASE COUNT 377 a 340 c 485 g 296 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-C C-CCGA---G -GGCG-G-GG 421 -GAU-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------GC 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CCU--- 601 --(------- ---GAAA--- ---)------ ----GGG--| -CCUCA--C- G--CCC---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-G A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --UUA-GCC( U----GAACA -----G---) GGUU-GA-AU 1081 ---------- -------U-U U-GA-CGUU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAC- 1321 -GGCA-UCUA A-GAC-UGGU U-GGCUA-GA GUC-----UC G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UU-CC---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------GGA -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCC 1981 -CAC-A--(- GAGA-)-UGU -G-GUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GA -UA--CAAAG UGA-A-G-C- GA-CCU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-A CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UCG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UGNG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.7 HAFNIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.7 HAFNIA. ORGANISM 2.14.3.15.7 HAFNIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Haf.alvei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Hafnia alvei. ACCESSION No information KEYWORDS No information. SOURCE Hafnia alvei. ORGANISM Hafnia alvei. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59155 ATCC 13337 = NCDC 434-68 (T) = NCTC 8105 NB: Haf.alvei/Haf.alvei2 differ by 10% of 314 bp in common Haf.alvei2 differs from E.coli by only 3.6% BASE COUNT 379 a 324 c 466 g 310 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAY---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCAG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUG-UGG( U----UAAUA -----A---) CCAC-AG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UG- 1261 R-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGU C-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-NG- NCN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.8 YERSINIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.8 YERSINIA_GROUP. ORGANISM 2.14.3.15.8 YERSINIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.ptuber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia pseudotuberculosis str. Serotype III 1B1 B28 (W.W.). ACCESSION No information KEYWORDS No information. SOURCE Yersinia pseudotuberculosis str. Serotype III 1B1 B28 (W.W.). ORGANISM Yersinia pseudotuberculosis. REFERENCE 1 AUTHORS Harmsen,D.W., Schmelz,J.F. and Heesemann,J. TITLE The nucleotide sequence of the small ribosomal subunit RNA of the genus Yersinia JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21939 isolate_name= Serotype III 1B1 B28 (W.W.) BASE COUNT 372 a 334 c 468 g 303 t 2899 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) GCUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC -U-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.pesti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia pestis.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia pestis. ORGANISM Yersinia pestis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37604|g576926 BASE COUNT 371 a 332 c 465 g 299 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) GCUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UUAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC -U-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.pestis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia pestis str. EV76. ACCESSION No information KEYWORDS No information. SOURCE Yersinia pestis str. EV76. ORGANISM Yersinia pestis. REFERENCE 1 AUTHORS Dikhanov,G.G. and Podladchikova,O.N. TITLE A comparative analysis of the nucleotide sequence of the 5'-end and of the central domain of the 16S rRNA of yersinia pestis and escherichia coli JOURNAL Mol. Biol. (Mosk.) 25, 1635-1642 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67464 isolate_name= EV76 BASE COUNT 249 a 217 c 318 g 190 t 3402 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GAGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) ACUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACA-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- GU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AUUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUU-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-U..... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.pesti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia pestis str. D-28 ATCC 19428 (T). ACCESSION No information KEYWORDS No information. SOURCE Yersinia pestis str. D-28 ATCC 19428 (T). ORGANISM Yersinia pestis. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19428 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75274|g436814 ATCC 19428 (T) = NCTC 5923 isolate_name= D-28 BASE COUNT 367 a 324 c 455 g 293 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..GUC-GAGC 121 G--AN-AG-N GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--UU----- ---------- ---------- 241 --------UN -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-NC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CAGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UCCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) GCUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-CC(-G AA-G)CCGC- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UUU 1981 -GGC-A--(- GAGA-)-UGC -U-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- NA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.friksn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia frederiksenii str. ER-1419 ATCC 33641. ACCESSION No information KEYWORDS No information. SOURCE Yersinia frederiksenii str. ER-1419 ATCC 33641. ORGANISM Yersinia frederiksenii. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33641 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75273|g436811 isolate_name= ER-1419 BASE COUNT 361 a 331 c 452 g 292 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-ANU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAG------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -(------)- ------G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-N CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) GCUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGNC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGN- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UC|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W. and Stackebrandt,E. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68672|g967121 BASE COUNT 338 a 298 c 424 g 266 t 3050 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AN-N NA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACN-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GG --UUG-AGU( U----UAAUA -----C---) GCUC-AA-UC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACNG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CNG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ----UG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G C......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.YEM17B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia sp.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia sp. ORGANISM Yersinia sp. REFERENCE 1 AUTHORS Ibrahim,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89574|g899430 BASE COUNT 375 a 337 c 473 g 300 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUG-UGG( U----UAAUA -----A---) CCGC-AG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACC--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.YEM11A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia sp.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia sp. ORGANISM Yersinia sp. REFERENCE 1 AUTHORS Ibrahim,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89573|g899429 BASE COUNT 377 a 335 c 468 g 301 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-NCCA UNCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUG-UGG( U----UAAUA -----A---) CCAC-AG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.bercov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia bercovieri str. ER-2937 ATCC 43970. ACCESSION No information KEYWORDS No information. SOURCE Yersinia bercovieri str. ER-2937 ATCC 43970. ORGANISM Yersinia bercovieri. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43970 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75281|g436810 isolate_name= ER-2937 BASE COUNT 377 a 340 c 456 g 304 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-N C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 AG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-AC-AN- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UACA|-CCCA UACC-GC-GU 961 G-U-GU-G-N A-GAA--G-N CC(--UU-CG --)GG-NUGU AAA--GCAC| UUUC-AC-CG 1021 --AG-GAG-- GA-A-GN-CA --GUC-GUG( U----UAAUA -----G---) CACG-AU-UG 1081 ---------- -------A-U U-GN-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCC A-ANCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-UC(-G AA-G)NCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CNG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUUC-C AU-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- CA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.rucker 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia ruckeri. ACCESSION No information KEYWORDS No information. SOURCE Yersinia ruckeri. ORGANISM Yersinia ruckeri. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75275|g436816 BASE COUNT 380 a 335 c 470 g 300 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- G-A--UCU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 AG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GU --UAA-GUG( U----UAAUA -----G---) CACU-GA-AC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-G-- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -GGC-A--(- GAGA-)-UGC -C-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.kristn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia kristensenii str. ER-2812 ATCC 33638. ACCESSION No information KEYWORDS No information. SOURCE Yersinia kristensenii str. ER-2812 ATCC 33638. ORGANISM Yersinia kristensenii. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33638 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75278|g436813 isolate_name= ER-2812 BASE COUNT 380 a 336 c 466 g 305 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-AAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAN---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 AG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAN-C|C-AC -ACUGG-A-C 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --AUC-GUG( U----UAAUA -----G---) CACG-GU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-N-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UN--UUUC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGNG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.aldova 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia aldovae. ACCESSION No information KEYWORDS No information. SOURCE Yersinia aldovae. ORGANISM Yersinia aldovae. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75277|g436809 BASE COUNT 369 a 329 c 467 g 291 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-ANU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --AUC-GUG( U----UAAUA -----G---) CACG-GU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-NC(-G AA-G)GCGN- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(U... ...).....C AA-------- CGAG-C--GC AACCC..... |......... 2281 .......... ....AC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.mollar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia mollaretii str. ER-2975. ACCESSION No information KEYWORDS No information. SOURCE Yersinia mollaretii str. ER-2975. ORGANISM Yersinia mollaretii. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75280|g458855 isolate_name= ER-2975 BASE COUNT 373 a 342 c 459 g 299 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UCCG)--G GAG-AC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UACA|-CCCA UACC-NC-GU 961 G-U-GU-G-N A-GAA--G-N CC(--UU-CG --)GG-NUGU AAA--GCAC| UUUC-AC-CG 1021 --AG-GAG-- GA-A-GA-CA --GUC-GUG( U----UAAUA -----G---) CACG-AU-UG 1081 ---------- -------A-U U-GN-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CNCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-NC(-G AA-G)GCGC- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGNG-U 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.intme2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia intermedia str. ER-3854. ACCESSION No information KEYWORDS No information. SOURCE Yersinia intermedia str. ER-3854. ORGANISM Yersinia intermedia. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75279|g436812 isolate_name= ER-3854 BASE COUNT 374 a 338 c 462 g 300 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-ANU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UCCG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UACA|-CCCA UACC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AN-CG 1021 --AG-GAG-- GA-A-GG-CA --GUC-GUG( U----UAAUA -----G---) CACG-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGNC A-ACCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGN- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AAC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUNN-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.rohdei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia rohdei str. ER-2935 ATCC 43380. ACCESSION No information KEYWORDS No information. SOURCE Yersinia rohdei str. ER-2935 ATCC 43380. ORGANISM Yersinia rohdei. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffith,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences JOURNAL FEMS Microbiol. Lett. 114, 173-177 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43380 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75276|g436815 isolate_name= ER-2935 BASE COUNT 374 a 335 c 466 g 298 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GC 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-AC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CC --AAU-ANC( U----UAAUA -----C---) GCUG-GU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)ACGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W. and Stackebrandt,E. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68673|g967122 BASE COUNT 342 a 301 c 427 g 273 t 3033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AN-N NG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CC --AAU-AAC( U----UAAUA -----C---) GUUG-UU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ----UG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CCU-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.entero 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59292 BASE COUNT 373 a 328 c 463 g 303 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUN -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGN-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- NGG|-GC--G AGCG-GCGN- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCNG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CC --AAU-AAC( U----UAAUA -----C---) GUUG-UU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-NAC- 1321 -NGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGNAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UN-NCGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CG-UA-CC A-CUUU-GUG AUU-CN-NG- NC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica str. ER-3206-92. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica str. ER-3206-92. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffiths,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences [published erratum appears in FEMS Microbiol Lett 1994 Feb 15; 116(2):243] JOURNAL FEMS Microbiol. Lett. 114 (2), 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49828|g861169 isolate_name= ER-3206-92 BASE COUNT 372 a 332 c 467 g 303 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CC --AAU-AAC( U----UAAUA -----C---) GUUG-UU-GG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W. and Stackebrandt,E. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68671|g967120 BASE COUNT 342 a 298 c 416 g 269 t 3051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AN-N NN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--NU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACN-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UAA-AGG( U----UAAUA -----A---) CCUU-UG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA N-AA--NAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGNUA-GA GUC-----UU G-UA-GAGGG GGG-U|ANAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACNU--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UCCN--- NN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CNG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ----UG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CCU-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica str. ER-31406-92. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica str. ER-31406-92. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Stackebrandt,E. Ibrahim,A., Goebel,B.M., Liesack,W., Griffiths,M. and TITLE sequences [published erratum appears in FEMS Microbiol Lett 1994 Feb 15;116(2):243] The phylogeny of the genus Yersinia based on 16S rDNA JOURNAL FEMS Microbiol. Lett. 114 (2), 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49830|g861168 isolate_name= ER-31406-92 BASE COUNT 378 a 334 c 467 g 305 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UAA-AGG( U----UAAUA -----A---) CCUU-UG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica str. ER-26036-92. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica str. ER-26036-92. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W., Griffiths,M. and Stackebrandt,E. TITLE The phylogeny of the genus Yersinia based on 16S rDNA sequences [published erratum appears in FEMS Microbiol Lett 1994 Feb 15; 116(2):243] JOURNAL FEMS Microbiol. Lett. 114 (2), 173-177 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49829|g861167 isolate_name= ER-26036-92 BASE COUNT 371 a 330 c 467 g 304 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UAA-AGG( U----UAAUA -----A---) CCUU-UG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Yer.enter8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Yersinia enterocolitica.. ACCESSION No information KEYWORDS No information. SOURCE Yersinia enterocolitica. ORGANISM Yersinia enterocolitica. REFERENCE 1 AUTHORS Ibrahim,A., Goebel,B.M., Liesack,W. and Stackebrandt,E. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68674|g967123 BASE COUNT 337 a 293 c 418 g 265 t 3063 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UAA-AGG( U----UAAUA -----A---) CCUU-UG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---AG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG UGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CACAU-AAAG -UC-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-A- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA.(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rah.aquat5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rahnella aquatilis. ACCESSION No information KEYWORDS No information. SOURCE Rahnella aquatilis. ORGANISM Rahnella aquatilis. REFERENCE 1 AUTHORS Evguenieva-Hackenberg,E., Kraut,M., Ludwig,W. and Selenska-Pobell,S. TITLE Molecular re-classification of five N2-fixing strains of Rahnella aquatilis, named formerly Enterobacter agglomerans JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79939|g516242 BASE COUNT 391 a 338 c 477 g 314 t 2856 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --CCA-UAC( U----UAAUA -----C---) GUGU-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA...... 1441 .......(.. .A-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)-C UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rah.aquat3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rahnella aquatilis str. 334. ACCESSION No information KEYWORDS No information. SOURCE Rahnella aquatilis str. 334. ORGANISM Rahnella aquatilis. REFERENCE 1 AUTHORS Evguenieva-Hackenberg,E., Kraut,M., Ludwig,W. and Selenska-Pobell,S. TITLE Molecular re-classification of five N2-fixing strains of Rahnella aquatilis, named formerly Enterobacter agglomerans JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79936|g515326 isolate_name= 334 BASE COUNT 389 a 337 c 477 g 314 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UCA-UAC( U----UAAUA -----C---) GUGU-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AA........ 1441 .......(.. .A-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)-C UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rah.aquat4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rahnella aquatilis str. 339. ACCESSION No information KEYWORDS No information. SOURCE Rahnella aquatilis str. 339. ORGANISM Rahnella aquatilis. REFERENCE 1 AUTHORS Evguenieva-Hackenberg,E., Kraut,M., Ludwig,W. and Selenska-Pobell,S. TITLE Molecular re-classification of five N2-fixing strains of Rahnella aquatilis, named formerly Enterobacter agglomerans JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79938|g515327 isolate_name= 339 BASE COUNT 390 a 337 c 477 g 314 t 2858 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UCA-UAC( U----UAAUA -----C---) GUGU-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GCG-C(- UU-A)A-CGU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAU....... 1441 .......(.. .A-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CNGACG-CUC AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----UUC 1981 -GCC-A--(- GAGA-)-UGG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)-C UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rah.aquat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rahnella aquatilis str. 2-87. ACCESSION No information KEYWORDS No information. SOURCE Rahnella aquatilis str. 2-87. ORGANISM Rahnella aquatilis. REFERENCE 1 AUTHORS Evguenieva-Hackenberg,E., Kraut,M., Ludwig,W. and Selenska-Pobell,S. TITLE Molecular re-classification of five N2-fixing strains of Rahnella aquatilis, named formerly Enterobacter agglomerans JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79937|g515325 isolate_name= 2-87 BASE COUNT 389 a 338 c 483 g 318 t 2848 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GN 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GU --UCA-GUG( U----UAAUA -----G---) CACU-GU-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GANG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- NA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)-C UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rah.aquat6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rahnella aquatilis str. 3-88. ACCESSION No information KEYWORDS No information. SOURCE Rahnella aquatilis str. 3-88. ORGANISM Rahnella aquatilis. REFERENCE 1 AUTHORS Evguenieva-Hackenberg,E., Kraut,M., Ludwig,W. and Selenska-Pobell,S. TITLE Molecular re-classification of five N2-fixing strains of Rahnella aquatilis, named formerly Enterobacter agglomerans JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79940|g517364 isolate_name= 3-88; 334 BASE COUNT 377 a 328 c 471 g 310 t 2890 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GU 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-GU --UCA-GUG( U----UAAUA -----G---) CACU-GU-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAGG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-NN- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-CU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-C----- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN110 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN110.. ACCESSION No information KEYWORDS No information. SOURCE clone UN110. ORGANISM clone UN110. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63596 BASE COUNT 79 a 57 c 98 g 59 t 4083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-C... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN119 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN119.. ACCESSION No information KEYWORDS No information. SOURCE clone UN119. ORGANISM clone UN119. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63600 BASE COUNT 79 a 57 c 97 g 59 t 4084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-C... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A39s 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A38s.. ACCESSION No information KEYWORDS No information. SOURCE clone A38s. ORGANISM clone A38s. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91462|g987767 BASE COUNT 90 a 71 c 122 g 72 t 4021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC.... 1741 .......... .....(.AA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ew.americ2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ewingella americana.. ACCESSION No information KEYWORDS No information. SOURCE Ewingella americana. ORGANISM Ewingella americana. REFERENCE 1 AUTHORS Inglis,P.W. TITLE Ewingella americana strain NCPPB 3905 16s rDNA JOURNAL Thesis, Life Science, University of Nottingham (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29438|g903619 BASE COUNT 359 a 314 c 439 g 286 t 2978 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UGAAG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUA-AGG( U----UAAUA -----A---) CCUU-AG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGG -CU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UG -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGCA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ew.america 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ewingella americana.. ACCESSION No information KEYWORDS No information. SOURCE Ewingella americana. ORGANISM Ewingella americana. REFERENCE 1 AUTHORS Inglis,P.W. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X88848|g895824 BASE COUNT 359 a 314 c 439 g 286 t 2978 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GC-AG-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-GC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GU-CUGGG- A-A--ACU-G C-CUGA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- ---------- ---------- ---CUC-(-- --------GA 541 AA-------- -)-GAG---- ---------- ----CAAA-- ---GUGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCA--C- G--CCA---- 661 ----UCGG-- AUG---U-|G CCCAG----- -AU|----GG G--AUUA-G- CUA-G---UA 721 GG-UGAAG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --AG-GAG-- GA-A-GG-CA --UUA-AGG( U----UAAUA -----A---) CCUU-AG-UG 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGG -CU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UUC 1981 -GCU-A--(- GAGA-)-UAG -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG AGA-A-G-C- GA-ACU-C(G 2881 -CGA)GAGC- ---------- AA-GCGGA-C CUCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UG -AGA-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGCA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G25 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G25.. ACCESSION No information KEYWORDS No information. SOURCE clone G25. ORGANISM clone G25. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91277|g987025 BASE COUNT 88 a 70 c 115 g 72 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGCA|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K10 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K10.. ACCESSION No information KEYWORDS No information. SOURCE clone K10. ORGANISM clone K10. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91525|g987800 BASE COUNT 87 a 70 c 115 g 72 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-HA-G-AGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- ---C-(KAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A41u 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A41u.. ACCESSION No information KEYWORDS No information. SOURCE clone A41u. ORGANISM clone A41u. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91464|g987769 BASE COUNT 85 a 67 c 115 g 69 t 4040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA G......... .......GGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-GUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-GG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CCC -GUGGC-UUC 1741 CG--GA---- ---S-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.F.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.15.9 PLE.SHIGELLOIDES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.15.9 PLE.SHIGELLOIDES. ORGANISM 2.14.3.15.9 PLE.SHIGELLOIDES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ple.shige3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Plesiomonas shigelloides str. M51 NCIMB 9242. ACCESSION No information KEYWORDS No information. SOURCE Plesiomonas shigelloides str. M51 NCIMB 9242. ORGANISM Plesiomonas shigelloides. REFERENCE 1 AUTHORS Martinez-Murcia,A.J., Benlloch,S. and Collins,M.D. TITLE Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations Phylogenetic interrelationships of members of the genera JOURNAL Int. J. Syst. Bacteriol. 42, 412-421 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60418 NCIMB 9242 = NCTC 10360 = RH 798 = CDC 3085-55 = ATCC 14029 (T) = CIP 63.5 (T) isolate_name= M51 isolate_name= RH798; M51 BASE COUNT 381 a 332 c 471 g 315 t 2877 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GC--U----- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--U- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AA-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --CAC-UAG( U----UAAUA -----C---) CUAG-UG-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG GGC-G-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ple.shige4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Plesiomonas shigelloides str. M51 CIP 63.5 (T). ACCESSION No information KEYWORDS No information. SOURCE Plesiomonas shigelloides str. M51 CIP 63.5 (T). ORGANISM Plesiomonas shigelloides. REFERENCE 1 AUTHORS Ruimy,R., Breittmayer,V., Elbaze,P., Lafay,B., Boussemart,O., Gauthier,M. and Christen,R. TITLE Phylogenetic analysis and assessment of the genera Vibrio, Photobacterium, Aeromonas, and Plesiomonas deduced from small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 416-426 (1994) STANDARD No information COMMENTS Organism information Culture collection: CIP 63 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74688 CIP 63.5 (T) = NCIMB 9242 = NCTC 10360 = RH 798 = CDC 3085-55 = ATCC 14029 (T) isolate_name= M51 isolate_name= RH798; M51 BASE COUNT 370 a 323 c 459 g 302 t 2922 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- G-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--U- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AA-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GU --CAC-UAG( U----UAAUA -----C---) CUAG-UG-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAN-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----CNU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG GGC-G-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ple.shigel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Plesiomonas shigelloides str. M51 ATCC 14029 (T). ACCESSION No information KEYWORDS No information. SOURCE Plesiomonas shigelloides str. M51 ATCC 14029 (T). ORGANISM Plesiomonas shigelloides. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogeny of some gamma purple bacteria based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14029 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59159 ATCC 14029 (T) = NCIMB 9242 = NCTC 10360 = RH 798 = CDC 3085-55 = CIP 63.5 (T) isolate_name= M51 isolate_name= RH798; M51 BASE COUNT 376 a 326 c 465 g 311 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-CUGGG- N-A--UCU-G C-CCGA---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----CAAA-- ---GUGGGG- GC--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCUCA--U- G--CUA---- 661 ----UCGG-- AUG---A-|A CCCAG----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AA-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-C-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AG-CG 1021 --GG-GAG-- GA-A-GG-GY --YAC-UAG( U----UAAUA -----C---) CUAG-UG-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GAG-C(- UC-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-AGCUA-GA GUC-----UU G-UA-GAGGG GGG-U|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-GG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---ASAG--- -AA----CUU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUS-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CNA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAAG GGC-G-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GC-AAAA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UA-CC A-CUUU-GUG AUU-CA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ple.shige2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Plesiomonas shigelloides str. M51 ATCC 14029 (T). ACCESSION No information KEYWORDS No information. SOURCE Plesiomonas shigelloides str. M51 ATCC 14029 (T). ORGANISM Plesiomonas shigelloides. REFERENCE 1 AUTHORS Kita-Tsukamoto,K., Oyaizu,H., Nanba,K. and Shimizu,U. TITLE Phylogenetic relationships of marine bacteria, mainly members of the family Vibrionaceae, determined on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 43, 8-19 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14029 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D11283 ATCC 14029 (T) = NCIMB 9242 = NCTC 10360 = RH 798 = CDC 3085-55 = CIP 63.5 (T) isolate_name= M51 isolate_name= RH798; M51 BASE COUNT 157 a 127 c 195 g 119 t 3778 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| .....U--(G -AGA)-GAAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCU -AGW-C-UKK -(KDCG)--G GAG-GC-DG- D-N---NN-N 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCUA UGCC-DY-GU 961 G-U-GU-G-R A-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--GCAC| UUUC-AK-CG 1021 --GG-GAG-- GA-A-GG-GC --CAC-UAG( U----UAAUA -----C---) CUAG-UG-GC 1081 ---------- -------A-U U-GA-CGUU- A-CUC-G-CA G-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... ......G(-G UGAAA)-UGC -GU-AGAG-A UC-UKGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CYYCCUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGABG-CUC AG-G------ -------UG- C-GWAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----DGUA-G UC----CAB- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GA-DG-UUG -UG-CC---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------GGC -GUGGC-UUY 1741 YG--GA---- --CG-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ........AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CKAAG GGC-G-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCGAA-U CCCAU-AAAG -UA-U-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.G 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.16 HAEMOPHILUS_PASTEURELLA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.16 HAEMOPHILUS_PASTEURELLA_GROUP. ORGANISM 2.14.3.16 HAEMOPHILUS_PASTEURELLA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.G.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.16.1 ACTINOBACILLUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.16.1 ACTINOBACILLUS_SUBGROUP. ORGANISM 2.14.3.16.1 ACTINOBACILLUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actin522 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75036 Former RDP Sids: Acb.act522 ATCC 29522 = CDC B5279 NB: GB states in the FEATURES that this is mitochondrial rRNA former name Actinobacillus actinomycetemcomitans BASE COUNT 368 a 305 c 484 g 315 t 2904 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G U-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGG---- ---------- ---------- ---------- ---GUC-(-- --------GG 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---UUNU--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UGAG-- AUG---A-|A CCCAA----- -GU|----GU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUG-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CG ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GNC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UG -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGUG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actinoY4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans str. FDC Y4. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans str. FDC Y4. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75035 Former RDP Sids: Acb.actY4 isolate_name= FDC Y4 NB: GB states in the FEATURES that this is mitochondrial rRNA former name Actinobacillus actinomycetemcomitans BASE COUNT 370 a 306 c 483 g 317 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G U-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGG---- ---------- ---------- ---------- ---GUC-(-- --------GG 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---UUAU--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UGAG-- AUG---A-|A CCCAA----- -GU|----GU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUG-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-NU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CG ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CNA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UG -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGUG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actin524 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75037 Former RDP Sids: Acb.act524 ATCC 29524 = CDC B5386 NB: GB states in the FEATURES that this is mitochondrial rRNA former name Actinobacillus actinomycetemcomitans BASE COUNT 368 a 307 c 488 g 315 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G U-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---GUC-(-- --------GG 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---UUNU--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUG-GA GUA-----CU U-UN-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UGGC-C AG-CGA---- ---------- ---------- ----(---CG ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UG -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGUG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actin523 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75038 Former RDP Sids: Acb.act523 ATCC 29523 = CDC A1916 NB: GB states in the FEATURES that this is mitochondrial rRNA former name Actinobacillus actinomycetemcomitans BASE COUNT 370 a 306 c 480 g 312 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G U-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---GUC-(-- --------GG 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------C-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUN-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CN--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UG -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGUG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-AG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actinom2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23305 (bases 1 to 345) Former RDP Sids: Acb.actin2 NCTC 9710 = ATCC 33384 (T) NB: former name Actinobacillus actinomycetemcomitans BASE COUNT 100 a 82 c 151 g 100 t 3943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GCA A)-CCC-NGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------A-U U--------- ---------- ---------- ---------- 1141 ---------- ---------( ---------- ---------) ---------- |--GUG-C-- 1201 NAG-CGUUNA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- NCG-UAG-GC -G|-GN-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUG-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CN--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.actinomy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus actinomycetemcomitans. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus actinomycetemcomitans. ORGANISM Haemophilus actinomycetemcomitans. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75039 Former RDP Sids: Acb.actino ATCC 33384 (T) = NCTC 9710 NB: GB states in the FEATURES that this is mitochondrial rRNA former name Actinobacillus actinomycetemcomitans BASE COUNT 373 a 307 c 479 g 318 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUGAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G U-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGA-- AUG---A-|G CCCAA----- -GU|----GU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-GC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UU --GGU-GUG( U----UAAUA -----G---) CAUG-CC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GA-CC- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG G-GUCUG-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------GCC -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus sp. ORGANISM Actinobacillus sp. REFERENCE 1 AUTHORS Tiveljung,A.M. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82610|g886837 BASE COUNT 97 a 79 c 112 g 82 t 4006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UC|--- ---------C ---GAAG--- -AA----GAA 1981 -CUN-A--(- GAGA-)-UGG -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-A-A-C- CA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parain01 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parainfluenzae str. 429 (M.Pittman) ATCC 7901. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parainfluenzae str. 429 (M.Pittman) ATCC 7901. ORGANISM Haemophilus parainfluenzae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 7901 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75040 ATCC 7901 = ICPB 3506 isolate_name= 429 (M.Pittman) NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 375 a 308 c 467 g 315 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGNC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UNU-N G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-UU --GUU-GUG( U----UAAUA -----G---) CGCA-AC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-A-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.paraphrF 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus paraphrophilus str. Funagli (K. Zinnemann) ATCC 29241 (T). ACCESSION No information KEYWORDS No information. SOURCE Haemophilus paraphrophilus str. Funagli (K. Zinnemann) ATCC 29241 (T). ORGANISM Haemophilus paraphrophilus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29241 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75042 ATCC 29241 (T) = NCTC 10557 isolate_name= Funagli (K. Zinnemann) NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 372 a 308 c 466 g 311 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GN 421 -NAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGN---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUNG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|A CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-NC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-UU --GUU-GUG( U----GAAUA -----G---) CACA-AC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 NAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGANU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-A-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.aphrophi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus aphrophilus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus aphrophilus. ORGANISM Haemophilus aphrophilus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75041 ATCC 33389 (T) = NCTC 5906 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 372 a 309 c 466 g 316 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -NANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAU -GC-UUGGG- N-A--UNU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|A CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-UU --GUU-GUG( U----UAAUA -----G---) CGCA-AC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CN-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -UG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGANU UN-ACGGG-G -G-C-CN--G 1861 C-N--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-A-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.aphroph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus aphrophilus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus aphrophilus. ORGANISM Haemophilus aphrophilus. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23303 (bases 1 to 345) NCTC 5906 = ATCC 33389 (T) BASE COUNT 100 a 80 c 145 g 101 t 3950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GNA A)-CCC-NGA CGCA|-GCNA UGCN-GN-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-UU --GUU-GUG( U----UAAUA -----G---) CGCA-AC-AA 1081 ---------- -------A-U U-G-----U- G-CN...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUAA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- NCG-CNG-GC -N|-NN-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-N|NGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC CU-G------ -------UG- C-UAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -UG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 NG--UA---- --GC-(UAA- ---C)G-UG- AUNA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.segnis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus segnis. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus segnis. ORGANISM Haemophilus segnis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75043 ATCC 33393 (T) = NCTC 10977 BASE COUNT 367 a 317 c 471 g 303 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAU -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(NACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU NAA--GUUC| UUUC-GG-UN 1021 --AN-GAG-- GA-A-GG-CG --UGA-UGU( U----UAAUA -----G---) GCAU-CA-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUNA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GC-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AGCUN-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CC---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-A-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parainf2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parainfluenzae str. UNK. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parainfluenzae str. UNK. ORGANISM Haemophilus parainfluenzae. REFERENCE 1 AUTHORS Hamed,K.A., Dormitzer,P.R., Su,C.K. and Relman,D.A. TITLE Haemophilus parainfluenzae endocarditis: application of a molecular approach for identification of pathogenic bacterial species JOURNAL Clin. Infect. Dis. 19, 677-683 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26363|g556183 tissue_type= blood biol_source= blood of a 24 year-old woman with endocarditis isolate_name= UNK BASE COUNT 107 a 80 c 136 g 88 t 3965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .....GA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-A G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-CA --UUU-AGU( U----UAAUA -----A---) ACUG-GA-UG 1081 ---------- -------A-U U-GA-CGUU- A-AC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.paraphrH 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus paraphrophilus str. Haywood (K. Zinnemann) ATCC 29242. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus paraphrophilus str. Haywood (K. Zinnemann) ATCC 29242. ORGANISM Haemophilus paraphrophilus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29242 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75082 ATCC 29242 = NCTC 10558 isolate_name= Haywood (K. Zinnemann) BASE COUNT 373 a 308 c 461 g 310 t 2924 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUNA AGAGUU(U-G A)U-CNN|-N 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NNUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-A G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UNA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-CA --UUU-AGU( U----UAAUA -----G---) ACUA-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCN-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) N-N-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-GC-C CN-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -AG-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGC -UUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CAU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-GAG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CNA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parainfl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parainfluenzae. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parainfluenzae. ORGANISM Haemophilus parainfluenzae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75081 Former RDP Sids: H.parain92 ATCC 33392 (T) = NCTC 7857 BASE COUNT 364 a 307 c 469 g 319 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~...AUGN AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UNU-N G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AUG---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-N A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UN 1021 --GC-GAG-- GA-A-GG-CA --UUU-AGU( U----UAAUA -----G---) ACUA-GG-UG 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUN-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CU-GU--N 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -AN-CU---- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- -------AGC -UUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUN -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CAU 1981 -UCC-A--(- GAGA-)-UGG -A-UUGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NN)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-GAG-U(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax06 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 6. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 6. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06081 isolate_name= Bisgaard Taxon 6 BASE COUNT 367 a 312 c 476 g 311 t 2910 others ORIGIN 1 .......... .......... .......... .....ACUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G U-CUUA---G -GGAG-G-GN 421 -GAU-AA-CG A--------- ------CG-- G(-GNAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----GAAA-- ---GGGUGG- GN--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCG---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-RG- C-R---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCUA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --AUU-GCU( U----UAAUA -----G---) AGCA-GU-UN 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----CN U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GN-UU---- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACNC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UA ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-A-A-C- GA-GCC-U(G 2881 -CNN)GGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UC -AA-CC---- ---------- ---------- -----(---- -NUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.somnus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus somnus.. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus somnus. ORGANISM Haemophilus somnus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75046 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 370 a 301 c 481 g 305 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGGN-AG (--RU----- ---------- ---------- 241 --------UN -)CU-UUCUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAA -GC-UUGGG- A-A--UCU-G G-CNAA---U -GGAG-G-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--G UAAUACC-GC 481 GU-AAG---- ---------- ---------- ---------- ---GUC-(-- --------UN 541 AG-------- -)-GAC---- ---------- ----UAAAG- ---GGGUGG- GA--CU---- 601 --(------- ---NAGA--- ---)------ -----GG--| -CCACC--U- N--CCA---- 661 ----UUUG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-NAG-GG) -C-UCACC-A A|-GCU-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --AUU-AGU( U----UAAGA -----G---) AUUA-AU-UG 1081 ---------- -------A-U U-GA-CGAU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GU -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAC- 1321 -AGCA-UUUC A-GAC-UGGG U-GACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 NAA--GA-UA CUGACG-CUC GA-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-U----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------AC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -NAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GCC 1981 -GCC-A--(- GAGA-)-UGG -U-GGUG--- UG-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---CU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CC-N-CCG --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-G-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- AA-GCGAA-G CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGGAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCN -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG GUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH2,PH8. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH2,PH8. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57066 isolate_name= PH2,PH8; serotype A1 BASE COUNT 380 a 308 c 469 g 314 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAGG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --AUU-GUU( U----UAAUA -----G---) AACA-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-G----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------CU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75080 NCTC 9380 (T) = ATCC 33396 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 381 a 304 c 460 g 317 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAGG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-CCUAG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUAU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACN-N A|-GCC-NG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -NCUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --AUU-UUU( U----UUAUA -----G---) AACA-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGAA C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 AAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-G----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------CU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUN AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH152. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH152. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57068 isolate_name= PH152; UT23; serotype UG3 BASE COUNT 381 a 306 c 466 g 314 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GARRA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UYYUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --AUU-GUU( U----UAAUA -----G---) AACA-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-G----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------CU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH344. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH344. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57067 isolate_name= PH344; serotype A11 BASE COUNT 380 a 310 c 469 g 312 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --AUU-GUU( U----UAAUA -----G---) AACA-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-G----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------CU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH290. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH290. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57069 isolate_name= PH290; serotype UG3 BASE COUNT 376 a 312 c 469 g 310 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AS-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AWAGR-AG (--CU----- ---------- ---------- 241 --------UG -)CU-YCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --ACU-GUU( U----UAAUA -----G---) AACA-GU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 18 CCUG 20954. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 18 CCUG 20954. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57077 isolate_name= Bisgaard Taxon 18 BASE COUNT 359 a 310 c 458 g 312 t 2937 others ORIGIN 1 .......... .......... .......... ....UAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UN -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-NAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 CG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---NUNA--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UNAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -NCUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUNUU G-CNCNAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-CG --AUU-GUU( U----UAAUA -----G---) AACA-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UA- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGC U-AUCUA-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-N UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UNN-NA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UNA- ---C)G-UG- AUNA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-AU CNU-G-GN-C CUUNC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GNNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 20 CCUG 16504. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 20 CCUG 16504. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57078 isolate_name= Bisgaard Taxon 20 BASE COUNT 372 a 311 c 467 g 319 t 2907 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGG-AG (--UU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 UG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UNUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-CG- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU NAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --AUU-GUU( U----UAAUA -----G---) AACA-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-GA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GGC 1981 -CGU-A--(- GAGA-)-UAU -G-GCUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-CCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GNA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH704. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH704. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57072 isolate_name= PH704; serotype UG5 BASE COUNT 382 a 309 c 465 g 316 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 AG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GU- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --GUU-GUU( U----UAAUA -----G---) AACA-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----CCU 1981 -UGU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-GCC-A(G 2881 -CGA)UGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG-AAG... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 15 CCUG 16500. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57076 isolate_name= Bisgaard Taxon 15 BASE COUNT 376 a 310 c 461 g 322 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UU 541 UG-------- -)-GAG---- ---------- ----UAAA-- ---GGGUGG- GN--CU---- 601 --(------- ---UUNG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --CUU-UGU( U----UAAUA -----G---) ACAA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-CCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GNA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH360. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH360. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57071 isolate_name= PH360; serotype UG4 BASE COUNT 378 a 311 c 464 g 317 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 UG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-NC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-CA --GAC-UUG( U----UAAUA -----G---) CAAG-UU-UG 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-CCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG-AAG... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haemo6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica str. PH40. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica str. PH40. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57070 isolate_name= PH40; UT35; serotype UG4 BASE COUNT 375 a 311 c 464 g 317 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UU 541 UG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-NC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-CA --GAC-UUG( U----UAAUA -----G---) CAAG-UU-UG 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ANN--UC -R-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-CCC-A(G 2881 -CGA)UGGU- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG-AAG... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.pphrhaem 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus paraphrohaemolyticus str. Lawton 1 (K. Zinnemann) NCTC 10670 (T). ACCESSION No information KEYWORDS No information. SOURCE Haemophilus paraphrohaemolyticus str. Lawton 1 (K. Zinnemann) NCTC 10670 (T). ORGANISM Haemophilus paraphrohaemolyticus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10670 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75076 NCTC 10670 (T) = ATCC 29237 isolate_name= Lawton 1 (K. Zinnemann) NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 375 a 299 c 459 g 316 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACAN-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAUU-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NA-UU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CNUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AC-GAG-- GA-A-GG-UU --GAU-AGG( U----UAAUA -----G---) CCUA-UC-AA 1081 ---------- -------A-U U-GA-NGUU- A-AUU-A-CN G-AA--GAAG ---------C 1141 -NCNNGCU-A NCUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUN-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UCC-U(G 2881 -CGA)NGGG- ---------- GA-GCAAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-N G-UU-UA-CC A-CGGU-AUG AUU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.equul2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus equuli. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus equuli. ORGANISM Actinobacillus equuli. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23309 (bases 1 to 345) BASE COUNT 114 a 79 c 141 g 103 t 3939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GGA A)-CCC-NGA UGCA|-GCCA UGCN-GC-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GUGCN... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -N|-NN-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-UAU- 1321 -UGCA-UUUC A-UAC-UGGU C-UACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.lig976 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus lignieresii str. CM 2 (P.H. Martin) NCTC 4976. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus lignieresii str. CM 2 (P.H. Martin) NCTC 4976. ORGANISM Actinobacillus lignieresii. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Organism information Culture collection: NCTC 4976 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23311 (bases 1 to 345) NCTC 4976 = ATCC 19393 isolate_name= CM 2 (P.H. Martin) BASE COUNT 108 a 80 c 142 g 101 t 3945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GGA A)-CCC-NGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GUGCN... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUNA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- NCG-CNG-GC -N|-NN-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-UACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-GU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CN--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.plpne3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus pleuropneumoniae str. S1536. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus pleuropneumoniae str. S1536. ORGANISM Actinobacillus pleuropneumoniae. REFERENCE 1 AUTHORS Taneda,A., Futo,S., Mitsuse,S., Seto,Y., Okada,M., Sakano,T. and Yamamoto,K. TITLE Oligonucleotide probes for Actinobacillus pleuropneumoniae based on 16S ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30031|g484246 (bases 193 to 1735) isolate_name= S1536 BASE COUNT 409 a 317 c 481 g 336 t 2833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-GU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAG-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.plpne4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus pleuropneumoniae str. Hi-1. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus pleuropneumoniae str. Hi-1. ORGANISM Actinobacillus pleuropneumoniae. REFERENCE 1 AUTHORS Taneda,A., Futo,S., Mitsuse,S., Seto,Y., Okada,M., Sakano,T. and Yamamoto,K. TITLE Oligonucleotide probes for Actinobacillus pleuropneumoniae based on 16S ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30032|g484247 (bases 83 to 1625) isolate_name= Hi-1 BASE COUNT 409 a 318 c 481 g 335 t 2833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-GU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-C 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAG-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.plpne2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus pleuropneumoniae str. Shope4074. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus pleuropneumoniae str. Shope4074. ORGANISM Actinobacillus pleuropneumoniae. REFERENCE 1 AUTHORS Taneda,A., Futo,S., Mitsuse,S., Seto,Y., Okada,M., Sakano,T. and Yamamoto,K. TITLE Oligonucleotide probes for Actinobacillus pleuropneumoniae based on 16S ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D30030|g493618 (bases 87 to 1629) isolate_name= Shope4074 BASE COUNT 410 a 317 c 479 g 337 t 2833 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UAU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAG-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.pleuro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus pleuropneumoniae str. R.Shope 4074? ATCC 27088 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus pleuropneumoniae str. R.Shope 4074? ATCC 27088 (T). ORGANISM Actinobacillus pleuropneumoniae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27088 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75074 ATCC 27088 (T) = HK 405 = CCM 5869 geog_source= Argentina biol_source= lung of swine isolate_name= R.Shope 4074? NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 384 a 302 c 458 g 320 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 UG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-NAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CN G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UN-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -NGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-NA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.lign93 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus lignieresii str. CM 2 (P.H. Martin) ATCC 19393. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus lignieresii str. CM 2 (P.H. Martin) ATCC 19393. ORGANISM Actinobacillus lignieresii. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19393 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35017 ATCC 19393 = NCTC 4976 isolate_name= CM 2 (P.H. Martin) BASE COUNT 384 a 303 c 448 g 321 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUNA NNANUU(U-N A)U-CAN|-G 61 GCUCAG-AUU -NANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-NN (--CU----- ---------- ---------- 241 --------UN -)CN-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UNU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 AG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUNG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UNA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UNAUA -----G---) AUUU-NG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UN- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-NU-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- N-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.lignie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus lignieresii. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus lignieresii. ORGANISM Actinobacillus lignieresii. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75068 Former RDP Sids: Acb.lign89 NCTC 4189 (T) = ATCC 49236 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 390 a 306 c 461 g 324 t 2895 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 AG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-GAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax08 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 8. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 8. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06083 isolate_name= Bisgaard Taxon 8 BASE COUNT 373 a 309 c 463 g 324 t 2907 others ORIGIN 1 .......... .......... .......... ....UAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAC---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--UC---- 601 --(------- ---UUCG--- ---)------ -----GA--| -CCACU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C NCG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CNCNAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCNUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-NU-N-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CNA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-UGU-C(G 2881 -CGA)GGCG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.ureae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus ureae str. Henrikson 3520/59 T ATCC 25976. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus ureae str. Henrikson 3520/59 T ATCC 25976. ORGANISM Actinobacillus ureae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25976 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75075 isolate_name= Henrikson 3520/59 T BASE COUNT 384 a 300 c 453 g 322 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CNN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACNN-NUGCN A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NAUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUCA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 AG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GG-(GGG A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCNGCN-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-NGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GN-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CNGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax09 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 9. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 9. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06084 isolate_name= Bisgaard Taxon 9 BASE COUNT 394 a 304 c 457 g 322 t 2899 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NAUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUCA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU N-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCNUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGU -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CNG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CNA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.suis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus suis. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus suis. ORGANISM Actinobacillus suis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75071 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 383 a 305 c 453 g 318 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUNG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---ANU -GC-UUGGG- A-A--UCU-G G-CUCA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UNAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UN- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -NAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CNGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CNA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parahaem 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parahaemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parahaemolyticus. ORGANISM Haemophilus parahaemolyticus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75073 NCTC 8479 (T) = ATCC 10014 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 381 a 305 c 454 g 315 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUNN NGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GN--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGN)-NNAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGANG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UN-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNNAN NG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNN -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.equuli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus equuli. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus equuli. ORGANISM Actinobacillus equuli. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75072 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 388 a 305 c 455 g 316 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UA --UCA-AAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UN-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-NN-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUNA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.cap799 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus capsulatus. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus capsulatus. ORGANISM Actinobacillus capsulatus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75067 BASE COUNT 390 a 308 c 457 g 318 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --RAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 MG-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --GUU-GUU( U----UAAUA -----G---) AACA-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.hom800 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus hominis. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus hominis. ORGANISM Actinobacillus hominis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06076 BASE COUNT 388 a 309 c 462 g 317 t 2900 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUCA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GWGUGG- GA--CC---- 601 --(------- ---KCAA--- ---)------ -----GG--| -CCACW--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --GUA-AUG( U----UAAUA -----G---) CAUU-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-ACU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-GU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.homini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus hominis str. P578 NCTC 11529. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus hominis str. P578 NCTC 11529. ORGANISM Actinobacillus hominis. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11529 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23307 (bases 1 to 345) Former RDP Sids: Acb.hom529 NCTC 11529 = ATCC 49457 (T) isolate_name= P578 BASE COUNT 112 a 81 c 147 g 100 t 3936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GGA A)-CCC-NGA UGCA|-GCCN UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UA 1021 --GC-GAG-- GA-A-GG-UG --GUA-AUG( U----UAAUA -----G---) CAUU-AU-CA 1081 ---------- -------A-U U-GUGCN... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GN-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-UACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-CU---- ---------- 1681 -(-GU-G-)- ---------- ---------- ---------- -------AGU -CUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.G.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.16.2 PASTEURELLA_ASSEMBLAGE_I. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.16.2 PASTEURELLA_ASSEMBLAGE_I. ORGANISM 2.14.3.16.2 PASTEURELLA_ASSEMBLAGE_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax05 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 5. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 5. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06080 isolate_name= Bisgaard Taxon 5 BASE COUNT 373 a 304 c 467 g 324 t 2908 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NCYYU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GACUGG- GA--AC---- 601 --(------- ---UUCG--- ---)------ -----GU--| -CCAGU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACN-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-GU --GGU-NUU( U----UAAUA -----G---) AGCA-UC-AU 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA C-GACUA-GA GUN-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GU-(UNA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCU 1981 -UGU-A--(- GAGA-)-UAC -G-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-AGC-A(G 2881 -UNA)UGCG- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGCGUC- (UGCAAC-U- C)-GACGCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax07 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 7. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 7. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06082 isolate_name= Bisgaard Taxon 7 BASE COUNT 369 a 308 c 476 g 322 t 2901 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------CG-- G(-GAAA-)C -UGUG-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 AG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UA --UCG-GAU( U----UAAUA -----G---) AUUU-GG-UA 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-C----- ---------- 1681 -(-UU-UG)- ---------- ---------- ---------- -------AGC -UUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UNC-UC-UUG ACA-UC|--- ---------C ---AACG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 UG--UUGC-C AU-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-G-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GG-GCGAA-U CUCUU-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-CA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.haemoglo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus haemoglobinophilus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus haemoglobinophilus. ORGANISM Haemophilus haemoglobinophilus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75064 NCTC 1659 (T) = ATCC 19416 NB: NCTC 1659 is correct ATCC lists former name as Haemophilus canis GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 380 a 303 c 460 g 326 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--N AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GACUGG- GA--CU---- 601 --(------- ---UUU---- ---)------ -----AG--| -CCAGU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UU- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CU --UAG-AUG( U----UAAUA -----G---) CAUU-UA-GG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCN- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GCU 1981 -CGU-A--(- GAGA-)-UAU -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-A-C- GA-ACC-A(G 2881 -CGA)UGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGN A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.avium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella avium str. IPDH 2654 NCTC 11297 (T). ACCESSION No information KEYWORDS No information. SOURCE Pasteurella avium str. IPDH 2654 NCTC 11297 (T). ORGANISM Pasteurella avium. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11297 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75058 NCTC 11297 (T) = ATCC 29526 isolate_name= IPDH 2654 NB: GB states in the FEATURES that this is mitochondrial rRNA NCTC lists this as Haemophilus avium BASE COUNT 375 a 308 c 470 g 317 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CNG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UU --GGA-GUG( U----UAAUA -----G---) CGCU-CU-AA 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-UACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGW-W-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -UCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGN-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.paragall 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus paragallinarum. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus paragallinarum. ORGANISM Haemophilus paragallinarum. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75057 NCTC 11296 (T) = ATCC 29545 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 372 a 307 c 454 g 323 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGA AGAGUU(U-G A)U-CNU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUN-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(N -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UU --NGU-GUG( U----UAAUA -----G---) CACA-CU-AA 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUNA UC-GGAAUAA -CU-GGGC|U UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UNGU U-UACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--GC-UA CUGACG-CUC AU-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UN-N-)- ---------- ---------- ---------- -------GGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-A-G-C- GA-GCC-U(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.taxonC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus sp.. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus sp. ORGANISM Haemophilus sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75056 legacy_attribute= biovar:taxon C NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 376 a 306 c 466 g 326 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UG --GUA-GUG( U----UAAUA -----G---) CAUU-AU-NA 1081 ---------- -------U-U U-UA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UNGU U-UACUN-GA GUA-----CU C-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------RGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CNGAG GGG-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- NA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.sp782 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp.. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75055 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 373 a 308 c 468 g 321 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUCGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UU --GGA-GCG( U----UAAUA -----G---) CGUU-CU-GA 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGU U-UACUA-GA GUA-----CU C-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-GA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-NU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUN AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.gallin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella gallinarum. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella gallinarum. ORGANISM Pasteurella gallinarum. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75059 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 371 a 307 c 468 g 323 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGN AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--NU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-CG --GUA-GUG( U----UNAUA -----G---) CGCU-AU-UG 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGUU U-UACUA-GA GUA-----CU C-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AG)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AN CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGG-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.vol101 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella volantium. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella volantium. ORGANISM Pasteurella volantium. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75060 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 373 a 308 c 459 g 320 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUNN AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-NC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 NA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UANN-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-N A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --NU-GNG-- GA-A-GG-CG --GUG-GUG( U----UAAUA -----G---) CACU-AC-UG 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA N-NA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UNGU U-UACUA-GA GUA-----CU C-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGNGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUA-GA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAN-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CNAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.volant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella volantium. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella volantium. ORGANISM Pasteurella volantium. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75070 NCTC 3438 (T) = ATCC 14385 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 375 a 308 c 468 g 318 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGC AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUUU--- ---)------ -----AG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-CG --GUA-GUG( U----UAAUA -----G---) YACU-AY-UG 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-AA- 1261 A-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-N)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGU U-UACUA-GA GUA-----CU C-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUN-NR)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGR-U-G-C- GA-GCC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.treha3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella trehalosi str. T4 PH 246. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella trehalosi str. T4 PH 246. ORGANISM Pasteurella trehalosi. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57075 PH 246 = NCTC 10626 isolate_name= T4 BASE COUNT 385 a 301 c 464 g 320 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCYUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUU-UGU( U----UAAUA -----G---) ACAA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UA- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGC U-AUCUA-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU U--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GGC 1981 -CGU-A--(- GAGA-)-UAU -G-GCUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.haem24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella haemolytica. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella haemolytica. ORGANISM Pasteurella haemolytica. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75063 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 378 a 305 c 462 g 324 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUU-UGU( U----UAAUA -----G---) ACAA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UA- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGC U-GUCUN-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU U--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-NA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CNA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.trehal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella trehalosi str. T3 PH 68. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella trehalosi str. T3 PH 68. ORGANISM Pasteurella trehalosi. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57073 PH 68 = NCTC 11550 isolate_name= T3 BASE COUNT 380 a 301 c 467 g 321 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUU-UGU( U----UAAUA -----G---) ACAA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGC A-GUCUA-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU U--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ANN--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.treha2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella trehalosi str. T10 PH 252. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella trehalosi str. T10 PH 252. ORGANISM Pasteurella trehalosi. REFERENCE 1 AUTHORS Davies,R.L., Paster,B.J. and Dewhirst,F.E. TITLE Phylogenetic relationships and diversity within the Pasteurella haemolytica complex based on 16S rRNA sequence comparison and outer membrane protein and lipopolysaccharide analysis JOURNAL Int. J. Syst. Bacteriol. 46, 736-744 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U57074 PH 252 = NCTC 10641 isolate_name= T10 BASE COUNT 383 a 302 c 466 g 320 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUU-UGU( U----UAAUA -----G---) ACAA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGC A-GUCUA-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU U--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-A-G-C- GA-GCC-A(G 2881 -CGA)UGGU- ---------- GA-GCCAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 GUG---AAG. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.bettya 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella bettyae. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella bettyae. ORGANISM Pasteurella bettyae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06088 Former RDP Sids: Pas.bett42 Pas.bettii BASE COUNT 383 a 300 c 464 g 316 t 2913 others ORIGIN 1 .......... .......... .......... ....UAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AY-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UNU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 CG-------- -)-GAC---- ---------- ----UAAA-- ---GGGUGG- GN--CU---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GGU-AUU( U----UAAUA -----G---) AAUA-CU-UG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- AUG-CAG-GC -G|-GU-UG- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGA C-AGCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GA-UUG -AG-CA---- ---------- 1681 -(-AU-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCG 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CA ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-A-G-C- GA-GCC-U(G 2881 -CNN)GGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CG---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-C..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.langaa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella langaa. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella langaa. ORGANISM Pasteurella langaa. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75053 ATCC 43328 (T) = NCTC 11411 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 388 a 303 c 455 g 317 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUGAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-A G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GGCUGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCAGU--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-NNAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GG-(GCA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --GA-GAG-- GA-A-GG-CG --AAC-UUG( U----GAAUA -----G---) CAAG-UU-UG 1081 ---------- -------A-U U-GA-CGUU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -AGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -AG-C----- ---------- 1681 -(UNN-AA)- ---------- ---------- ---------- --------GC -UUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAC 1981 -ACU-A--(- GAGA-)-UAG -U-GUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---GU ---NAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.ducreyi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus ducreyi. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus ducreyi. ORGANISM Haemophilus ducreyi. REFERENCE 1 AUTHORS Rossau,R., Duhamel,M., Jannes,G., DeCourt,J.L. and Van Heuverswyn,H. TITLE The development of specific rRNA-derived oligonucleotide probes for Haemophilus ducreyi, the causative agent of chancroid JOURNAL J. Gen. Microbiol. 137, 277-285 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M63900 CIP 542 = ATCC 33940 (T) BASE COUNT 396 a 311 c 462 g 326 t 2881 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-A- (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GUU-UUG( U----UAAUA -----G---) CAAA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA UNGANN-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GU-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGA -CUGGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 --AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- AA-ACC-U(G 2881 -CAA)AGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.ducrey35 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus ducreyi str. HD 35000 ATCC 33922. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus ducreyi str. HD 35000 ATCC 33922. ORGANISM Haemophilus ducreyi. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33922 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75079 isolate_name= HD 35000 BASE COUNT 378 a 304 c 456 g 319 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGNU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-GG (--CN----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UNU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GUU-UUG( U----UAAUA -----G---) CAAA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GN-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUNG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GU-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGA -CUGGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGANU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUNC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- AA-ACC-U(G 2881 -CAN)AGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.ducrKC57 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus ducreyi str. KC57 ATCC 27722. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus ducreyi str. KC57 ATCC 27722. ORGANISM Haemophilus ducreyi. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27722 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75084 isolate_name= KC57 NB: ATCC has as the strain of ATCC 27722 as Zierdt IX not KC57 BASE COUNT 379 a 307 c 461 g 320 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGNU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-GG (--CN----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GUU-UUG( U----UAAUA -----G---) CAAA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GN-NG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GU-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGA -CUGGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGANU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- AA-ACC-U(G 2881 -CNN)AGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.ducreyi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus ducreyi. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus ducreyi. ORGANISM Haemophilus ducreyi. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75078 CIP 542 = ATCC 33940 (T) BASE COUNT 382 a 308 c 457 g 324 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GUU-UUG( U----UAAUA -----G---) CAAA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 A-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-CAU- 1321 -UGCA-UUUC A-UAC-UGGU C-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GU-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGA -CUGGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGC-G-G-C- AA-ACC-U(G 2881 -CNA)AGGG- ---------- GA-GCGAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.paracuni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus paracuniculus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus paracuniculus. ORGANISM Haemophilus paracuniculus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75061 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 384 a 304 c 461 g 318 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------NG -)CN-NUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UCUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --GUU-AGU( U----UAAUA -----G---) ACUA-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA A-GUCUA-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-NU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNN -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-A-G-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.cap408 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus capsulatus str. P243 NCTC 11408 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus capsulatus str. P243 NCTC 11408 (T). ORGANISM Actinobacillus capsulatus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11408 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75062 isolate_name= P243 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 379 a 297 c 457 g 324 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --GUU-AGU( U----UAAUA -----G---) ACUA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-N)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA A-GUCUN-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-NGAG-A UG-UNGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----UCC 1981 -GAU-A--(- GAGA-)-UAU -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGN-U 2221 GG-G-(UUNN -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-A-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.cap396 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus capsulatus. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus capsulatus. ORGANISM Actinobacillus capsulatus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75069 NB: GB states in the FEATURES that this is mitochondrial rRNA seq. same as Acb.cap408 which is also type strain BASE COUNT 378 a 297 c 462 g 325 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAAG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --GUU-AGU( U----UAAUA -----G---) ACUA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-N)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGA A-GUCUN-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----UCC 1981 -GAU-A--(- GAGA-)-UAU -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-A-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GNA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.minor1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus minor str. NM 305. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus minor str. NM 305. ORGANISM Actinobacillus minor. REFERENCE 1 AUTHORS Moller,K., Fussing,V., Grimont,P.A., Paster,B.J., Dewhirst,F .E. and Kilian,M. TITLE Actinobacillus minor sp. nov., Actinobacillus porcinus sp. nov., and Actinobacillus indolicus sp. nov., three new V factor-dependent species from the respiratory tract of pigs JOURNAL Int. J. Syst. Bacteriol. 46 (4), 951-956 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65582|g1519225 isolate_name= NM 305 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 380 a 302 c 460 g 314 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-NG --GUU-GUU( U----UAAUA -----G---) AACA-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AUGCAA-C G)--CGNAGA 1921 A-CCUNA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GGC 1981 -CGN-A--(- NAGA-)-UAU -G-GCUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUN-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-AAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -NAA-G-UAG 3121 A-UAG-C-UU -AA-CG---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.sp202 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus sp. str. 202, sub_species minor group. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus sp. str. 202, sub_species minor group. ORGANISM Haemophilus sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75077 isolate_name= 202, sub_species minor group BASE COUNT 385 a 306 c 462 g 324 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~...UUGN AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CA --GGU-RAG( U----UAAUA -----G---) CUUR-CU-UG 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUN-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAC-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CG---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.porcin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus porcinus str. NM 319. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus porcinus str. NM 319. ORGANISM Actinobacillus porcinus. REFERENCE 1 AUTHORS Moller,K., Fussing,V., Grimont,P.A., Paster,B.J., Dewhirst,F .E. and Kilian,M. TITLE Actinobacillus minor sp. nov., Actinobacillus porcinus sp. nov., and Actinobacillus indolicus sp. nov., three new V factor-dependent species from the respiratory tract of pigs JOURNAL Int. J. Syst. Bacteriol. 46 (4), 951-956 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65583|g1519226 isolate_name= NM 319 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 384 a 300 c 461 g 316 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------NG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------UG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CU---- 601 --(------- ---NUAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UU-AG-( GU-AAA-GG) -C-UGACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUU-GUU( U----UAAUA -----G---) AACA-AG-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-N-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- AN-ACC-U(G 2881 -CGA)GGGA- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -NAA-G-UAG 3121 A-UAG-C-UU -AA-CG---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parasNag 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parasuis str. Nagasaki. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parasuis str. Nagasaki. ORGANISM Haemophilus parasuis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75066 isolate_name= Nagasaki NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 374 a 298 c 469 g 321 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~...UUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- G-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CK A--------- ------CG-- G(-GAAA-)C -UGUM-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----UAGA-- ---GGGUGG- GA--CU---- 601 --(------- ---UUNA--- ---)------ -----GG--| -CCACU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-GU --GAU-GUU( U----UAAUA -----G---) AGCA-UU-AC 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-SA- 1261 C-UU-AAG|U GRG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-KGCUA-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--AA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UN-N-)- ---------- ---------- ---------- -------AGN -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GNU 1981 -NUC-A--(- GAGA-)-UGA -G-ANUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-A-C- GA-AGC-N(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- -NNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.parasuis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus parasuis. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus parasuis. ORGANISM Haemophilus parasuis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75065 NCTC 4557 (T) = ATCC 19417 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 386 a 299 c 462 g 315 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UN -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUN|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GACUGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCAGU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CRCAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AN-GAG-- GA-A-GG-GU --GGU-GUU( U----UAAUA -----G---) AACA-CU-AC 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-UGCUA-GA GUA-----UU U-NA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--AA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------N|N -GG-GA-UUG -GG-CU---- ---------- 1681 -(-NA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAA 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGU-G-A-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGN A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CN---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.indoli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus indolicus str. 46KC2. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus indolicus str. 46KC2. ORGANISM Actinobacillus indolicus. REFERENCE 1 AUTHORS Moller,K., Fussing,V., Grimont,P.A., Paster,B.J., Dewhirst,F .E. and Kilian,M. TITLE Actinobacillus minor sp. nov., Actinobacillus porcinus sp. nov., and Actinobacillus indolicus sp. nov., three new V factor-dependent species from the respiratory tract of pigs JOURNAL Int. J. Syst. Bacteriol. 46 (4), 951-956 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65584|g1519224 isolate_name= 46KC2 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 374 a 299 c 468 g 316 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AUU -GAAC-NC-- UGGC-GGG-A -GGC-UU--A ACAU-AUGAA A-AUC-GAGG 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 AA-------- -)-GAC---- ---------- ----GAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UAUU--- ---)------ -----GG--| -CCACN--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-GU --GGU-GUU( U----UAAUA -----G---) AGCA-CU-AC 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUGA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-GA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--AA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-G-)- ---------- ---------- ---------- -------UGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------N ---AGAG--- -AA----NGN 1981 -NGU-A--(- GAGA-)-UAN -G-GCUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-U-A-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAC-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.semini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus seminis. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus seminis. ORGANISM Actinobacillus seminis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75047 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 374 a 301 c 482 g 308 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UNGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GGGUGG- GA--CU---- 601 --(------- ---GAAG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UN 1021 --GU-GAG-- GA-A-GG-UG --AUG-AAG( U----GAAGA -----G---) UUUC-AU-CA 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-NGGG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -GGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AA-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-NU-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -GA----GAG 1981 -UGN-N--(- GAGA-)-UGU -G-CUUG--- NG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AU-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG AGC-G-A-C- GA-GGC-C(G 2881 -CGN)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.mair89 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella mairii. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella mairii. ORGANISM Pasteurella mairii. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06089 BASE COUNT 376 a 303 c 481 g 319 t 2897 others ORIGIN 1 .......... .......... .......... .....AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --GUN-GAU( U----UAAUA -----G---) AUUC-AC-UN 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -GGCA-UUUC A-GAC-UGGG G-GUCUA-GA GUA-----UU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGG--GA-UA CUGACG-CUC AA-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGU -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG AGC-G-A-C- GA-GGC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.aeroge 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella aerogenes str. P-172-71 ATCC 27883 (T). ACCESSION No information KEYWORDS No information. SOURCE Pasteurella aerogenes str. P-172-71 ATCC 27883 (T). ORGANISM Pasteurella aerogenes. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27883 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75048 isolate_name= P-172-71 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 365 a 310 c 473 g 312 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -NANN-GC-- UGGC-GGC-A -GGC-UU--A ACAN-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GACCGG- GA--CC---- 601 --(------- ---GCNA--- ---)------ -----GG--| -CCGGU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-CG --GUU-AGU( U----UAAUA -----G---) GCUA-AU-CG 1081 ---------- -------A-U U-GA-CGUU- A-AUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UG- 1261 C-UU-AAG|U GAG---GUGU G-AAA-UC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG C-AGCUN-GA GUA-----UU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--AA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UUU-NA)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CNA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAG 1981 -CGC-A--(- GAGA-)-UGU -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG AGC-G-A-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GUGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -CGAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.pneumo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella pneumotropica. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella pneumotropica. ORGANISM Pasteurella pneumotropica. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75083 NCTC 8141 (T) = ATCC 35149 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 382 a 304 c 463 g 314 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 AG-------- -)-GAC---- ---------- ----AAAA-- ---GGGGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUCU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --AUA-AGG( U----UAAUA -----C---) CCUU-AU-UA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG A-AUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-C----- ---------- 1681 -(UUU-AA)- ---------- ---------- ---------- --------GC -UUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AGAG--- -AA----GAG 1981 -ACU-A--(- GAGA-)-UAG -U-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-A(G 2881 -CGA)UGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UG-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-CA-CC A-CGGU-AUG AUU-CA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. 16N CIP 103723. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. 16N CIP 103723. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Quentin,R., Ruimy,R., Rosenau,A., Musser,J.M. and Christen,R . TITLE Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA JOURNAL J. Clin. Microbiol. 34, 1380-1385 (1996) STANDARD No information COMMENTS Organism information Culture collection: CIP 103723 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87978 isolate_name= 16N BASE COUNT 370 a 299 c 458 g 311 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 NA-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-GA --UGU-GUG( C----UAAUA -----G---) UACA-NN-UC 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UUC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAU--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-G-G-C- GA-AAC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. 2406. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. 2406. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Quentin,R., Ruimy,R., Rosenau,A., Musser,J.M. and Christen,R . TITLE Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA JOURNAL J. Clin. Microbiol. 34, 1380-1385 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87979 isolate_name= 2406 BASE COUNT 371 a 300 c 458 g 310 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-GA --UGU-GUG( C----UAAUA -----G---) UACA-CG-UC 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAU--- ---------- ---------- ----(----U ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-G-G-C- GA-AAC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.haemolyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus haemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus haemolyticus. ORGANISM Haemophilus haemolyticus. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75045 NCTC 10659 (T) = ATCC 33390 NB: NCTC 10659 is correct GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 364 a 305 c 467 g 313 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UN--A ACNC-AUGCN A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CC---- 601 --(------- ---GCAA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGN)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UN 1021 --UU-GAG-- GA-A-GG-AG --UGU-AUG( U----UAAUA -----G---) CAUA-CA-UU 1081 ---------- -------A-U U-GA-CGUU- N-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CNCGGUN-A) U-N-C-GGAG |-GGUG-C-- 1201 GAG-CGUUNA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-NNA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-NN-A-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AUGG--- -AA----UUC 1981 -UGU-A--(- GAGA-)-UAC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCA-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGU-G-G-C- GA-AAC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.aegyptiu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus aegyptius. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus aegyptius. ORGANISM Haemophilus aegyptius. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75044 NCTC 8502 (T) = ATCC 11116 NB: GB states in the FEATURES that this is mitochondrial rRNA ATCC lists this as Haemophilus influenzae biogroup aegyptius BASE COUNT 374 a 302 c 462 g 318 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -NAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---GUC-(-- --------GA 541 GA-------- -)-GAC---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -U-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) CACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-NGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-NU---- ---------- 1681 -(-UN-N-)- ---------- ---------- ---------- -------ACU -CUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNN -NN)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCR-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae.. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Raadstroem,P., Backman,A., Qian,N., Kragsbjerg,P., Paahlson ,C. and Olcen,P. TITLE Detection of bacterial DNA in cerebrospinal fluid by an assay for simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy JOURNAL J. Clin. Microbiol. 32, 2738-2744 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22806 geog_source= Lund University Hospital biol_source= cerebrospinal fluid BASE COUNT 256 a 205 c 308 g 216 t 3391 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------ACU -CUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAU--- ---------- ---------- ----(----A ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. biotype III CCUG 7585. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. biotype III CCUG 7585. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Quentin,R., Ruimy,R., Rosenau,A., Musser,J.M. and Christen,R . TITLE Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA JOURNAL J. Clin. Microbiol. 34, 1380-1385 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87976 isolate_name= biotype III BASE COUNT 373 a 300 c 455 g 313 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 AA-------- -)-GAU---- ---------- ----UAAA-- ---GUGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) CACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------ACU -CUGGC-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAU--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influenz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35019 ATCC 33391 (T) = NCTC 8143 BASE COUNT 384 a 304 c 467 g 324 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) CACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|N -GG-GG-UUG -GG-GU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------ACU -CUGGC-ACC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23301 (bases 1 to 345) NCTC 8143 = ATCC 33391 (T) BASE COUNT 108 a 84 c 142 g 102 t 3940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GNA A)-CCC-NGA CGCA|-GCCC UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G -C(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) CACA-UC-AA 1081 ---------- -------A-U U-G-----U- G-CN...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUAA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- NCG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCNG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-UAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------ACU -CUGGC-ACC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUNA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02897|g455040 ATCC 33391 (T) = NCTC 8143 BASE COUNT 103 a 85 c 117 g 86 t 3985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.influen7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. biotype IV CIP 5483. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. biotype IV CIP 5483. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Quentin,R., Ruimy,R., Rosenau,A., Musser,J.M. and Christen,R . TITLE Genetic identification of cryptic genospecies of Haemophilus causing urogenital and neonatal infections by PCR using specific primers targeting genes coding for 16S rRNA JOURNAL J. Clin. Microbiol. 34, 1380-1385 (1996) STANDARD No information COMMENTS Organism information Culture collection: CIP 5483 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87977 isolate_name= biotype IV BASE COUNT 374 a 297 c 457 g 313 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnA gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 623235 to 624773) operon= rrnA gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnB gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnB gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 656517 to 658055) operon= rrnB gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnC gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnC gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 770620 to 772158) operon= rrnC gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnD 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnD gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnD gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 1819872 to 1821410) complement operon= rrnD gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnF 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnF gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnF gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 245423 to 246961) complement operon= rrnF gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS H.inflrrnE 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haemophilus influenzae str. Rd [gene=rrnE gene]. ACCESSION No information KEYWORDS No information. SOURCE Haemophilus influenzae str. Rd [gene=rrnE gene]. ORGANISM Haemophilus influenzae. REFERENCE 1 AUTHORS Tatusov,R.L., Mushegian,A.R., Bork,P., Brown,N.P., Hayes,W.S ., Borodovsky,M., Rudd,K.E. and Koonin,E.V. TITLE Metabolism and evolution of Haemophilus influenzae deduced from a whole genome comparison with Escherichia coli JOURNAL Curr. Biol. 6, 279-291 (1996) STANDARD No information REFERENCE 2 AUTHORS Fleischmann,R.D., Adams,M.D., White,O., Clayton,R.A., Kirkness,E.F., Kerlavage,A.R., Bult,C.J., Tomb,J.-F., Dougherty,B.A., Merrick,J.M., McKenney,K., Sutton,G., FitzHugh,W., Fields,C.A., Gocayne,J.D., Scott,J.D., Shirley,R., Liu,L.-I., Glodek,A., Kelley,J.M., Weidman,J. F., Phillips,C.A., Spriggs,T., Hedblom,E., Cotton,M.D., Utterback,T.R., Hanna,M.C., Nguyen,D.T., Saudek,D.M., Brandon,R.C., Fine,L.D., Fritchman,J.L., Fuhrmann,J.L., Geoghagen,N.S.M., Gnehm,C.L., McDonald,L.A., Small,K.V., Fraser,C.M., Smith,H.O. and Venter,J.C. TITLE Whole-genome random sequencing and assembly of Haemophilus influenzae Rd JOURNAL Science 269 (5223), 496-512 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42023 (bases 126587 to 128125) complement operon= rrnE gene isolate_name= Rd BASE COUNT 401 a 315 c 485 g 338 t 2837 others ORIGIN 1 .......... .......... .......... ....AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CG A--------- ------CG-- G(-GAAA-)C -UGUC-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 AA-------- -)-GAU---- ---------- ----GAAA-- ---GUGCGG- GA--CU---- 601 --(------- ---GAGA--- ---)------ -----GG--| -CCGCA--U- G--CCA---- 661 ----UAGG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-UG) -C-CUACC-A A|-GCC-UG- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --UU-GAG-- GA-A-GG-UU --GAU-GUG( U----UAAUA -----G---) UACA-UC-AA 1081 ---------- -------A-U U-GA-CGUU- A-AAU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -AG-G-AAU- 1321 -UGCA-UUUC A-GAC-UGGG U-AACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-CU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AGC -UUGGU-GCC 1741 CG--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGAC--- ---------- ---------- ----(----U ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GUCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-AGC-U(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -UA-C-GUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.3.G.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.3.16.3 PASTEURELLA_ASSEMBLAGE_II. ACCESSION No information KEYWORDS No information. SOURCE 2.14.3.16.3 PASTEURELLA_ASSEMBLAGE_II. ORGANISM 2.14.3.16.3 PASTEURELLA_ASSEMBLAGE_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acb.salpin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinobacillus salpingitidis. ACCESSION No information KEYWORDS No information. SOURCE Actinobacillus salpingitidis. ORGANISM Actinobacillus salpingitidis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06077 BASE COUNT 390 a 299 c 467 g 318 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-NA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UAAAAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUUU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAAG- ---GGGUG-- ----GU---- 601 --(------- ---UACG--- ---)------ -----GU--| --CACC--U- G--CCA---- 661 ----AAGG-- AUG---A-|A CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UU --NAU-AUG( U----UAAUA -----G---) CAUA-UU-NA 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GG-AC- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -AGCA-UUUC A-UAC-UGUC G-UUCUA-GA GUA-----CU N-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GGA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-U----- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------AC -UUGGC-UCU 1741 CG--AA---- --GC-(AAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -GA----GGC 1981 -UUU-A--(- GAGA-)-UAG -A-GCUG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 UG--UUAC-C AA-CGG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-G-G-C- GA-AGU-A(G 2881 -CGA)UAUG- ---------- GA-GCGAA-A CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UN -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-NR- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.anatis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella anatis str. F149 ATCC 43329 (T). ACCESSION No information KEYWORDS No information. SOURCE Pasteurella anatis str. F149 ATCC 43329 (T). ORGANISM Pasteurella anatis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43329 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75054 isolate_name= F149 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 382 a 306 c 475 g 306 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GC-UUGGG- G-A--UCU-G G-CUUU---U -GGAG-G-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUACC-GC 481 AU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAAG- ---GGGUGG- ---------- 601 --(------- ---GAAA--- ---)------ ---------| -CCACU--U- G--CCA---- 661 ----AGGG-- AUG---A-|A CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-CG --GUA-GUG( U----UAAUA -----G---) CGCU-AU-CG 1081 ---------- -------U-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GG-AC- 1261 G-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-NAC- 1321 -AGCA-UUUC A-UAC-UGGC G-UACUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -UA-C----- ---------- 1681 -(GAA-AG)- ---------- ---------- ---------- --------GU -AUGGC-UCU 1741 CG--AA---- --GC-(AAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UGAG--- -GA----GAA 1981 -GCU-A--(- GAGA-)-UAG -C-UUUG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUAC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-G-G-C- GA-AGU-A(G 2881 -CGA)UACG- ---------- GA-GCGAA-A CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax03 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 3. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 3. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06079 isolate_name= Bisgaard Taxon 3 BASE COUNT 388 a 300 c 477 g 319 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GC-UUGGG- A-A--UUU-G G-CUAA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAAG- ---GAGUGG- GA--CC---- 601 --(------- ---GUAA--- ---)------ -----GG--| -CCACU--U- G--CCA---- 661 ----UUGG-- AUA---A-|G CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AG-(GGA A)-CUC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-CG --GAU-AGG( U----GAAUA -----G---) CCNA-UC-UG 1081 ---------- -------A-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GU -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CN U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU G--AA-UU-- -------U|G -GG-GA-UUG -GG-U----- ---------- 1681 -(-UU-AG)- ---------- ---------- ---------- --------AC -UUGGU-CCU 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUUGR C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAA 1981 -GCU-A--(- GAGA-)-UAG -C-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---A(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-G-G-C- GA-AGU-G(G 2881 -CGA)CAUG- ---------- GA-GCGAA-A CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax02 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 2. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 2. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06078 isolate_name= Bisgaard Taxon 2 BASE COUNT 388 a 301 c 476 g 319 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAG -GC-UUGGG- N-A--UNU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAACACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----UAAAG- ---UAGAGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCUUU--A- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AG-(GGA A)-CUC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-UG --CAU-GCU( U----AAAUA -----G---) GGCA-UG-UA 1081 ---------- -------A-U U-GA-CGUU- A-GCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GU -G|-GU-GA- 1261 C-UU-AAG|U GAG---GUGU G-AAA-GC-C CU-NGG-C(- UU-A)A-CCU -GG-G-AAU- 1321 -UGCA-UUUC A-UAC-UGGG U-CGCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--GA-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GU-U----- ---------- 1681 -(GUU-AG)- ---------- ---------- ---------- --------GA -UUGGU-CCU 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -GA----GGA 1981 -CUU-A--(- GAGA-)-UAA -G-UCUG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---U(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGA-G-G-C- GA-AGU-G(G 2881 -CGA)CAUG- ---------- GA-GCGAA-A CUCAG-AAAG -UG-C-AUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.sp794 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp.. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75052 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 380 a 308 c 476 g 318 t 2894 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AUA---- ---------- ---------- ---------- ---AUC-(-- --------GG 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GACUGG- GA--GC---- 601 --(------- ---GAAA--- ---)------ -----GU--| -CCAGU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GU- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --GU-GAG-- GA-A-GG-CG --AUU-AGU( U----UAAUA -----G---) GCUA-AU-UG 1081 ---------- -------A-U U-GA-CGUU- A-ACC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UU-N)A-CCU -GG-G-AAU- 1321 -AGCA-UUUC A-GAC-UGUA U-AUCUA-GA GUA-----CU U-UA-GGGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-G----- ---------- 1681 -(UUN-AA)U ---------- ---------- ---------- --------CU -CUGGC-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GGG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AU-CGA---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-GAC-G(G 2881 -CGA)CGUU- ---------- GA-GCGAA-U CUCAU-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-CA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella canis. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella canis. ORGANISM Pasteurella canis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75049 ATCC 43326 (T) = NCTC 11621 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 379 a 304 c 464 g 319 t 2910 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGN AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-A -GGC-UU--A ACNC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UN -)CN-NUUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- N-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GGGUGG- GN--CC---- 601 --(------- ---GUNA--- ---)------ -----GG--| -CCACU--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-GG --UAU-UAU( U----GAAUA -----G---) AUAA-UA-UC 1081 ---------- -------A-U U-GA-CGUU- A-AUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CN U-NA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GA-C----- ---------- 1681 -(UUU-NU)- ---------- ---------- ---------- --------GU -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-GAC-G(G 2881 -CGA)CGUU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GNA-G-UGG 3121 A-UAG-C-UU -AA-CG---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGAGG-G-C G-UU-CA-CC A-CGGU-AUG AUU-CA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.stomat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella stomatis. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella stomatis. ORGANISM Pasteurella stomatis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75050 ATCC 43327 (T) = NCTC 11623 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 372 a 306 c 460 g 316 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CN-UUCUU N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------CG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GGGUGG- GA--NC---- 601 --(------- ---UUNG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUNUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- GA-A-GG-GG --UAU-UAU( U----GAAUA -----G---) AUAA-UA-UC 1081 ---------- -------A-U U-GA-CGUU- A-AUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-N-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-NAG-C(- UU-N)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-NA-UUG -GG-C----- ---------- 1681 -(UUU-NU)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUNA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UNAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C NA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-GAC-G(G 2881 -CGA)CGUU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UGG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-CA-CC A-CGGU-AUG AUU-CA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.dagmat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella dagmatis. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella dagmatis. ORGANISM Pasteurella dagmatis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M75051 ATCC 43325 (T) = NCTC 11617 NB: GB states in the FEATURES that this is mitochondrial rRNA BASE COUNT 385 a 306 c 462 g 322 t 2901 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AGU---- ---------- ---------- ---------- ---AUC-(-- --------GA 541 GA-------- -)-GAU---- ---------- ----GAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UN 1021 --AU-GAG-- GA-A-GG-GG --UAU-UAU( U----NAAUA -----G---) AUAA-UA-UC 1081 ---------- -------A-U U-GA-CGUU- A-AUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUNN-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|N -GG-GA-UUN -UG-C----- ---------- 1681 -(UUU-AU)- ---------- ---------- ---------- --------GC -AUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---AAAG--- -AA----GGC 1981 -CGU-A--(- GAGA-)-UAU -G-GCUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-G-G-C- GA-GAC-G(G 2881 -CGA)CGUU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-NGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTax13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 13. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 13. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06085 isolate_name= Bisgaard Taxon 13 BASE COUNT 386 a 306 c 461 g 322 t 2901 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUAA--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- GA-A-GG-GA --UGU-UGU( U----AAAUA -----G---) AUAG-CA-UC 1081 ---------- -------A-U U-GA-CGUU- A-AUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-NAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CN U-UA-GGNAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UU-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -NA--CAGAG GGC-A-G-C- GA-GAG-U(G 2881 -CGA)GCUU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.multoc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella multocida str. W-9217 NCTC 10322 (T). ACCESSION No information KEYWORDS No information. SOURCE Pasteurella multocida str. W-9217 NCTC 10322 (T). ORGANISM Pasteurella multocida. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., La Fontaine,S. and Rood,J.I. TITLE Transfer of Kingella indologenes (Snell and Lapage 1976) to the genus Suttonella gen. nov. as Suttonella indologenes comb. nov.; transfer of Bacteroides nodosus (Beveridge 1941) to the genus Dichelobacter gen. nov. as Dichelobacter nodosus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 426-443 (1990) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10322 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35018 NCTC 10322 (T) = ATCC 43137 isolate_name= W-9217 BASE COUNT 392 a 313 c 468 g 327 t 2876 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AG-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G G-CUUA---U -GGAG-G-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AUU---- ---------- ---------- ---------- ---CUC-(-- --------UG 541 AG-------- -)-GAG---- ---------- ----GAAA-- ---GGGUGG- GA--CC---- 601 --(------- ---UUAG--- ---)------ -----GG--| -CCACC--U- G--CCA---- 661 ----UAAG-- AUG---A-|G CCCAA----- -GU|----GG G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-UN- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- GA-A-GG-GA --UGU-UGU( U----AAAUA -----G---) AUAG-CA-UC 1081 ---------- -------A-U U-GA-CGUU- A-AUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUA-----CU U-UA-GGGAG GGN-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGNAGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -CCCCUUG-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 CG--AA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-NCGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-NG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CA -UA--CAGAG GGC-A-G-C- GA-GAG-U(G 2881 -CGA)GCUU- ---------- GA-GCGAA-U CUCAG-AAAG -UG-C-AUC- UAAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACN-NGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.multo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella multocida str. W-9217 NCTC 10322 (T). ACCESSION No information KEYWORDS No information. SOURCE Pasteurella multocida str. W-9217 NCTC 10322 (T). ORGANISM Pasteurella multocida. REFERENCE 1 AUTHORS Chuba,P.J., Bock,R., Graf,G., Adam,T. and Goebel,U.B. TITLE Comparison of 16S rRNA sequences from the family Pasteurellaceae: Phylogenetic relatedness by cluster analysis JOURNAL J. Gen. Microbiol. 134, 1923-1930 (1988) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10322 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23299 (bases 1 to 345) NCTC 10322 (T) = ATCC 43137 isolate_name= W-9217 BASE COUNT 107 a 84 c 147 g 100 t 3938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... .G-GG-(GGA A)-CCC-NGA CGCA|-GCCC UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G C-(--UU-CG --)GG-UU-- -AA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- GA-A-GG-GA --UGU-UGU( U----AGAUA -----G---) AUAG-CA-UC 1081 ---------- -------A-U U-GU--GCN. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .AG-CGUUNA UC-GGAAUNA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GN-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-GAC-UGGG A-GUCUA-GA GUC-----UC G-UA-GAGGG GGG-A|AGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-UGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCCCCU-- ---------- ---------- ---------G 1501 GAA--UG-UA CUGACG-CUC AU-G------ -------UG- C-UAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-CUGU C--GA-UU-- -------U|G -GG-GA-UUG -GG-C----- ---------- 1681 -(UAU-AU)- ---------- ---------- ---------- --------GC -UUGGU-GCC 1741 NN--UA---- --GC-(UAA- ---C)G-UG- AUAA-AUCGA C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.testud 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella testudinis. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella testudinis. ORGANISM Pasteurella testudinis. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06090 BASE COUNT 385 a 308 c 466 g 327 t 2890 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGA AGAGUU(U-G A)U-CAN|-G 61 GCUCAG-AUU -GAAN-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGGU-AG (--CN----- ---------- ---------- 241 --------NG -)CU-ACUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CCG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- A-A--UCU-G C-CUUA---U -GGCG-G-GG 421 -GAU-AA-CU A--------- ------CG-- G(-GAAA-)C -UGUA-G--C UAAUACC-GC 481 GU-AAC---- ---------- -------A-U CU-U--U--- ---ACU-(-- --------UU 541 AG-------- -)-GGU---- -A-GG----G AU--UAAA-- ---GUGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--C- G--CCA---- 661 ----UGAG-- AUG---A-|G CCCAA----- -GU|----GA G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GU- CGA------- -----UC-UC 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCUA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UG 1021 --AU-GAG-- GA-A-GG-UG --UUG-AAG( U----UAAUA -----G---) CUUU-AA-CA 1081 ---------- -------A-U U-GA-CGUU- A-GUC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-N-- 1201 GAG-CGUUAA UC-GGAAUAA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GA-UA- 1261 G-AU-AAG|U GAG---AUGU G-AAA-UC-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUC A-UAC-UGUU U-AUCUA-GA GUU-----UU G-UA-GAGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCCCUUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GG-U----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------AC -CUGGC-UCY 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GAG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GN-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-GAG-U(G 2881 -CGA)GCUU- ---------- AA-GCAAA-U CUCUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTx14a 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 14 CCUG 28027. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 14 CCUG 28027. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06087 isolate_name= Bisgaard Taxon 14 BASE COUNT 376 a 309 c 461 g 330 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UNAAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUUU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- G-A--UCU-G C-CCUA---U -GGCG-G-GG 421 -GAU-AA-CU G--------- ------CG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 WG-------- -)-GAC---- ---------- ----UAAA-- ---GUGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|A CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- AA-A-GG-GG --UGU-UGU( U----UAAUA -----G---) RCAG-CA-UC 1081 ---------- -------A-U U-GA-UGUU- A-GUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GA-UA- 1261 G-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUC A-GAC-UGGU U-AUCUA-GA GUC-----UU G-UA-GAGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCCCUUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GA-U----- ---------- 1681 -(NUU-UN)- ---------- ---------- ---------- --------AU -CUGGC-UCU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGR C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAGG--- -AA----GAA 1981 -CUU-A--(- GAGA-)-UAA -G-UUUG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- ----AA---| CCU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CRC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-GAG-U(G 2881 -CGA)GCUU- ---------- GA-GCGAA-U CUCUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pas.BTx14b 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pasteurella sp. str. Bisgaard Taxon 14 CCUG 16499R. ACCESSION No information KEYWORDS No information. SOURCE Pasteurella sp. str. Bisgaard Taxon 14 CCUG 16499R. ORGANISM Pasteurella sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Paster,B.J., Olsen,I. and Fraser,G.J. TITLE Phylogeny of the Pasteurellaceae as determined by comparison of 16S ribosomal ribonucleic acid sequences JOURNAL J. Bacteriol. 174, 2002-2013 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06086 isolate_name= Bisgaard Taxon 14 BASE COUNT 381 a 308 c 458 g 330 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-A -GGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UNAAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUUU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AUG|-AC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -GC-UUGGG- G-A--UCU-G C-CCUA---U -GGCG-G-GG 421 -GAU-AA-CU G--------- ------CG-- G(-GAAA-)C -UGCA-G--C UAAUACC-GC 481 GU-AAU---- ---------- ---------- ---------- ---GUC-(-- --------UA 541 UG-------- -)-GAC---- ---------- ----UAAA-- ---GUGUGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCACA--U- G--CCA---- 661 ----UAGG-- AUG---A-|A CCCAA----- -GU|----GA G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----UC-UC 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCNA UGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UUUC-GG-UA 1021 --AU-GAG-- AA-A-GG-GG --UGU-UGU( U----UAAUA -----G---) ACAG-CA-UC 1081 ---------- -------A-U U-GA-UGUU- A-GUU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-CAG-GC -G|-GA-UA- 1261 G-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-NAC- 1321 -UGCA-UUUC A-GAC-UGGU U-AUCUA-GA GUC-----UU G-UA-GAGAG GGG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCCCUUG-- ---------- ---------- ---------G 1501 ACA--AA-GA CUGACG-CUC AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU C--GA-UU-- -------U|G -GG-GG-UUG -GA-U----- ---------- 1681 -(NUU-UN)- ---------- ---------- ---------- --------AU -CUGGC-UCU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-AUCGR C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-UGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-UC-UUG ACA-UC|--- ---------C ---UAGG--- -AA----GAA 1981 -CUU-A--(- GAGA-)-UAA -G-UUUG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- AG-------- ----AA---| CCU-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-GUG A)-AAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ----(---CG ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAGAG GGA-A-G-C- GA-GAG-U(G 2881 -CGA)GCUU- ---------- GA-GCGAA-U CUCUU-AAAG -UG-C-GUC- GUAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-GGG- UU-GU-ACCA -GAA-G-UAG 3121 A-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-UU-UA-CC A-CGGU-AUG AUU-CA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4-DEL 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4 DELTA_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4 DELTA_SUBDIVISION. ORGANISM 2.14.4 DELTA_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.1 SBR_ISOLATES_VI. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.1 SBR_ISOLATES_VI. ORGANISM 2.14.4.1 SBR_ISOLATES_VI. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1114 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1114. str. SBR1114. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1114. str. SBR1114. ORGANISM str. SBR1114. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84540|g871661 isolate_name= SBR1114 BASE COUNT 97 a 86 c 131 g 68 t 3994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UNN-CU--A ACGC-AUGNA A-GUC-GAAC 121 G--GG----G GA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUGAG-GA (--GC----- ---------- ---------- 241 --------AA -)UC-UGAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-CU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CUUG---G -AGUG-G-GG 421 -AAC-AA-CG G--------- ------AC-- C(-GAAA-)G -GUUC-G--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---GUC-(-- --------GU 541 GA-------- -)-GAC---- ---------- ----CAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--CUC---- 661 ----UGAG-- AGG---A-|G CCUGC----- -GG|----UC G--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GG- GGA------- -----CC-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GCA A)-CUC-UGA UGCA|-GUAG CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-A UU(--UU-CG --)GA-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1029 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1029. str. SBR1029. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1029. str. SBR1029. ORGANISM str. SBR1029. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84472|g871593 isolate_name= SBR1029 BASE COUNT 104 a 88 c 130 g 79 t 3975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGN-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----AGG-U GCUUUUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CGAGA GUAUCCU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUUGG- UGA--CCU-G C-CCCA---A -AGUG-U-GG 421 -AAU-AA-CA G--------- ------UC-- C(-GAAA-)G -GAUU-G--C UAAUACC-UC 481 AU-GUG---- ---------- -------G-U -C-A--U-CG ---GGU-(-- --------UU 541 AG-------- -)-AAA---C CG-GU----G AC--UAAA-- ---GCA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UG--C- G--CUU---- 661 ----UGGG-- AGG---G-|G GCUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-G-GG| -A-CCU--(G -AGA)-GGGU ----GG-C-- CCC-C|C-AC -AAUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AUA-C-ACC -(UACG)--G GUG-GN-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-U-GC-G-A U-GAA--G-G UC(--UU-CG --)GGAUCGN AAA--GCAC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2037 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2037. str. SBR2037. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2037. str. SBR2037. ORGANISM str. SBR2037. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84576|g871697 isolate_name= SBR2037 BASE COUNT 96 a 94 c 133 g 65 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- AGUG-GCGC- 361 -A-CG-GG-U GAGG---AAC -AC-GUAGC- UUA--UCU-G C-CCCG---A -AGUG-U-GG 421 -GAU-AA-CG C--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-U CC-C--G-G- ---GUU-(-- --------CU 541 AG-------- -)-AGA---C CU-GA----G AG--AAAA-- ---GGC---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----GU--C- G--CUU---- 661 ----UGGG-- AGG---A-|G GCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-CG-( GU-AAU-GG) -C-GCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-G-GG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CCCAAU-- GG-AG-(GAA A)-CUC-UGA GGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.2 BDE.STOLPII_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.2 BDE.STOLPII_GROUP. ORGANISM 2.14.4.2 BDE.STOLPII_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11957|g143891 (bases 1 to 426) library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 201 a 144 c 201 g 183 t 3647 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GAGG |-GGUG-C-- 1201 AAG-CGUUGU CU-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GG-UU- 1261 U-GU-AAG|U GAA---AAUU G-AAA-UA-C AA-UGG-C(- UC-A)A-CCA -UU-G-GAA- 1321 -CGGU-UUUC A-UAC-UGCA A-AUCUU-GA GUU-----AU G-UA-GAGGU AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAA- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUACG UC----CAC- G-CC-GU--A 1621 AAUCC-GAUG A--GA-UC-- -------U|U -GG-UG-AUG -C........ ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)......GA 1921 A-CCUUA-CC UGG-AC-UUG ACA-GU|--- ---------U ---AGUG--- ACC----GGU 1981 -CUG-U--(- GAAA-)-GCA -G-UUCAU-- UU-------C UUAGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCUAAG---- ----AA---| CAC-UA-UCA |---C|A--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGAU AA-------- CGAG-C--GC AACCC-CU-A |-UU--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-A--CU-C- U-AGA-AA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-U CG-ACG--UC -A-AGUC-AG UAU-G-UC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUA--AUACA AUGGA-A-UA -UA--CAAAG GGU-U-G-C- AA-AUC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UU-U-UCC- UCAGUUCAGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bactM4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio sp. str. BM-4. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio sp. str. BM-4. ORGANISM Bdellovibrio sp. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61240|g289322 legacy_attribute= salt-requiring marine strain isolated by Marbach et al. isolate_name= BM-4 BASE COUNT 226 a 188 c 247 g 181 t 3534 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... CUC-UC---- 601 --(------- ---CUUU--- ---)------ -----GA-A| -GCAUU--U- A--CUA---- 661 ----UGAG-- AUN---G-|G GCCNC----- -GU|----UG C--AUUA-G- GUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AN-C-UN| -N-UCU--(G -AGA)-GGAU ----NA-U-- CAG-C|C-AC -ACUNG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGG-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-CNA NGCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- AN-ANNN-AA --GUU-GGU( C----NAAUA -----G---) GCCU-UC-UG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-CN A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUU--GAU( UGA--U.... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 .....AAG|U CAG---AUGU G-AAA-UC-C A--GGG-C(- UC-A)A-CCC -NN-N-AAC- 1321 -UGCG-UCNU N-UAA-AACU G-UUGAU-CA GAG-----UU G-UA-GGGGA GAA-G|GGAA 1381 UU-UCGCAU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UG-CGAAGG- AACA-CCAG- 1441 -A-G-CN(-N AA-G)GGGC- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGA-G-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -AU-UU-UGG -CC------- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CNC -UUCAG-NGU 1741 CG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-GCC- U-NGGAAGAC 1801 GGU-C---(G CAA)---G-A C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-U-CCU --NG(-GU-U NA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU NAU-N-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUN--AUACA AUGGU-G-CA -UA--CAAAG GGA-C-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCAA-AAAG -UG-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUUC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bacte2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio starrii. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio starrii. ORGANISM Bdellovibrio starrii. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61231|g289313 BASE COUNT 141 a 92 c 137 g 105 t 3901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... ......CUC| NNUU-UU-UN 1021 --GG-GAA-- AA-AUGA-UU --ANN-NNG( C----UAAUA -----N---) CCCU-GU-AA 1081 ---------- -------A-G U-GA-UGGU- A-CCU-A-AA G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUU.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... GUN-GGG(-G UAAAA)-UCC -GU-AGAG-A UG-UCAAGG- AACA-CCGG- 1441 -A-G-GC(-N AA-G)GCGC- -CUACCUN-- ---------- ---------- ---------G 1501 ACG--AC-NA UUGAN--CUN AG-N------ -------NC- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UN-CU-- -------N|G -UU-NU-UGG -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------NCC -UUCAG-UGA 1741 CG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GUNUU C|C|G-CCU- N-GGGAGUA. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---.GU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-NA-NU-C- U-GNA-NA-G A-CU-G-NNU --GG(-GN-U AA)-ACA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ANG--UA -A-AGUC-CU NAU-G-GC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-NA-N GUN--AUACA AUGGC-G-CG -UA--NNGAG GGA-A-G-C- GA-ACU-C(G 2881 -CAA)GGGA- ---------- GA-GCAAA-U CUCAA-AAAG -CG-C-GCC- UNAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACACCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUN 3001 GG-AGA-(UC -AGN-AU)-G NCU....... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A51p 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A51p.. ACCESSION No information KEYWORDS No information. SOURCE clone A51p. ORGANISM clone A51p. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91474|g987779 BASE COUNT 95 a 84 c 110 g 71 t 4016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......AGAA |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- CCG-CAG-GU -G|-UC-UU- 1261 C-UC-ACG|U CUG---GUGU C-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -AG-C-AUC- 1321 -GUAC-CGGA A-AAC-GAAG A-AGAUC-GA GUC-----AU U-CA-GAGGC AUC-U|GGAA 1381 UA-UCGUGU- GUA-GGG(-G UAAAA)-UCC -GU-UGAU-C CA-CGAUAG- AACG-CCAA- 1441 -A-A-GC(-G AA-G)GCAG- -GAUGCUA-- ---------- ---------- ---------G 1501 GGA--UG-UA CUGACA-CUC AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC G--UG-CU-- -------C|G -GU-GU-UGG -GA-CU---- ---------- 1681 -(UCA-AU)C ---------- ---------- ---------- -------UGU -CCCAG-UGC 1741 CU--UA---- ---S-(UUA- ---C)G-CG- GUAA-GCACG C|C|G-CCU- G-GGAAGUAC 1801 GGC-G...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.stolp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio stolpii str. UKi2 ATCC 27052 (T). ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio stolpii str. UKi2 ATCC 27052 (T). ORGANISM Bdellovibrio stolpii. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27052 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61239|g289321 ATCC 27052 (T) = ICPB 3291 = DSM 50722 = ATCC 27111 isolate_name= UKi2 BASE COUNT 183 a 146 c 233 g 156 t 3658 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|....GA ----NUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AU-C-NG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CGG-A|C-AC -ACUNG-A-A 841 (CUGA-GA-C NCG)--GUCC -AGG-C-UCU -(NACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUAUU G-CGCNAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G AC(--UU-CG --)GU-CUGU AAA--GCUC| UGUU-NA-UG 1021 --UG-GAA-- AA-AUGG-CA --GUU-GGU( C----UAAUA -----G---) GCCC-AU-UG 1081 ---------- -------U-U U-GA-UGGU- A-CAC-A-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... ........GA AUC-----UN G-GA-GGGGG AAG-G|NAU- 1381 UA--CGCAU- GUA-GGG(-G UNAAA)-UCC -GU-AGAU-A UG-NGAUGG- AANN-CCAG- 1441 -A-G-GC(-G AA-G)GCGC- -NUUCCUG-- ---------- ---------- ---------G 1501 ACG--AG-GA UUGA-G-CUG AG-G------ -------NN- N-NNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CU-CU-- -------A|G -UU-AU-UGG -AG-GA---- ---------- 1681 -(UUU-NA)C ---------- ---------- ---------- -------CCC -UUCAG-UGU 1741 CG--UA---- ---C-(UAA- ---C)G-CG- UUNA-GUGUU C|C|G-CCU- G-GGAAGN-C 1801 GGU-C...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-NGA-AA-G A-CU---C-U --GG(-GC-N NA)-NCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACN-GN-U GUA--AUNCU AUGGU-C-GG -UA--CCAAG GGA-U-G-C- GA-ACU-U(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUN-AUC 3001 GC-GGA-(UC -AGA-AN)-G CCG-CCGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.stolpi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio stolpii str. UKi2 ATCC 27052 (T). ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio stolpii str. UKi2 ATCC 27052 (T). ORGANISM Bdellovibrio stolpii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27052 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34125 ATCC 27052 (T) = ICPB 3291 = DSM 50722 = ATCC 27111 isolate_name= UKi2 BASE COUNT 381 a 320 c 429 g 316 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AGCAUNN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UGA--CCU-G C-CUUU---U -AGAG-G-GG 421 -AAU-AA-CC A--------- ------GA-- A(-GAAA-)U -UUUG-G--C UAAUGCC-GC 481 AU-ACG---- ---------- -------A-A GC-A--C-G- ---GUU-(-- --------UU 541 AA-------- -)-GAC---- UG-UG----C UU--GAAA-- ---GAAUGC- CUC-UG---- 601 --(------- ---CAUA--- ---)------ -----UG-N| -GCAUU--C- G--CUA---- 661 ----UUAG-- AUG---G-|G CCUGC----- -GG|----GA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-UC 781 U-AU-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G AC(--UU-CG --)GU-CUGU AAA--GCUC| UGUU-AA-UG 1021 --UG-GAA-- AA-AUGG-CA --GUU-GGU( C----UAAUA -----G---) GCCN-AU-UG 1081 ---------- -------U-U U-GA-UGGU- A-CAC-A-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAG |-GGUG-C-- 1201 NAG-CGUUGU UC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CC- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-U CG-GGG-C(- UC-A)A-CCU -CG-A-AAC- 1321 -UGCG-UCUG A-AAC-UACA G-GUCUA-GA AUC-----UC G-GA-GGGGG AAG-G|GGAA 1381 UA-UCGCAU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UG-CGAUGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGC- -CUUCCUG-- ---------- ---------- ---------G 1501 ACG--AG-UA UUGACG-CUG AG-G------ -------CN- C-NNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -AU-AU-UGG -AG-GA---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UCAA-GUGUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .....G-AUU A-U-G...GU -UUAAUU-CG .(..GCAA-C G)--CGCAGA 1921 A-CCUUA-CC UAG-GC-UUG AAA-UC|--- ---------C ---UACG--- -AA----UCC 1981 -CUU-U--(- UAAA-)-CGA -G-GGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UGU-AG-UGA |---C|A--G 2161 GC-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CUCGC AA-------- CGAG-C--GC AACCC-CC-A |-UU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CU-G-CNU --GG(-GC-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUA--AUACA AUGGU-C-GG -UA--CAAAG GGA-U-G-C- GA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAA-AAAA -CC-G-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -GAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- UU-UU-ACCU -GAA-G.... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.3 DESULFOVIBRIO_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.3 DESULFOVIBRIO_GROUP. ORGANISM 2.14.4.3 DESULFOVIBRIO_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.3.1 DHB.RETBAENSE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.3.1 DHB.RETBAENSE_SUBGROUP. ORGANISM 2.14.4.3.1 DHB.RETBAENSE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dhb.retbae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfohalobium retbaense. ACCESSION No information KEYWORDS No information. SOURCE Desulfohalobium retbaense. ORGANISM Desulfohalobium retbaense. REFERENCE 1 AUTHORS Tardy-Jacquenot,C, Magot,M, Laigret,F, Kaghad,M, Patel,B.K.C ., Guezennec,J, Matheron,R. and Caumette,P. TITLE Desulfovibrio gabonensis sp. nov., a new moderately halophilic sulfate-reducing bacterium oil isolated from an pipeline JOURNAL Int. J. Syst. Bacteriol. 46, 710-715 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48244 BASE COUNT 376 a 374 c 487 g 306 t 2833 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GANC-GC-- UGGC-GGC-G -UCC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AAAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU-CC (--UC----- ---------- ---------- 241 --------CG -)GG-AGAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAC---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUCG---A -GGUA-U-GG 421 -GAU-AA-CU C--------- ------UG-- C(-GAAA-)G -CGGG-G--C UAAUACC-GU 481 AU-AGU---- ---------- -------C-U GC-A------ ---CAC-(-- --------AU 541 AU-------- -)-CGC---- -G-UG----U GG--UAAA-- ---GAUGGC- CUC-UG---- 601 --(------- ---AUA---- ---)------ -----UA-A| -GCUAU--C- G--CCU---- 661 ----UGGG-- AUG---A-|G UCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAU-C|C-AC -NCUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GNCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCNA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCAC| UGUC-UG-GA 1021 --GG-GAA-- GA-AAUG-GG --UGA-UUC( C----CAAUA C----G---) GG-U-CU-CC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-AG- 1261 G-CC-AAG|U CAG---GUGU G-AAA-GG-C CC-ACG-G(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCA-CUUG A-AAC-UGUC U-UGCUA-GA GUA-----UG G-GA-GAGGG UGG-C|AGAA 1381 UU-CCCGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGN- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 CC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UC-CU-- -------A|G -GU-GU-UGG -GG-UC---- ---------- 1681 -(-GU-AG)- ---------- ---------- ---------- -------GAC -UUCAG-UAC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(C CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---CGGG--- -AG----CCU 1981 -CCA-U--(- GAAA-)-UUG -G-AGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CCC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGG-C AG-CAA---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-UAG-GA-G A-UU-G-CCG --AG(-GU-G AA)-CUU-C- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UA -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGU- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -CA--CAGAG GGU-A-G-C- AA-CAU-C(C 2881 -CGA)GGUA- ---------- GA-GCUAA-U CUCAA-AAAG -CC-C-AUC- UCAGUUCGGA 2941 U-CACAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- CU-CU-ACCC -GAA-G-UCA 3121 G-UGAGC-UA -AC-CC---- ---------- ---------- -----(---- -GUAUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CU-GC-CG A-CGGU-AGG GCU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.srb 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. TD3. str. TD3. ACCESSION No information KEYWORDS No information. SOURCE str. TD3. str. TD3. ORGANISM str. TD3. REFERENCE 1 AUTHORS Rueter,P., Rabus,R., Wilkes,H., Aeckersberg,F., Rainey,F.A., Jannasch,H.W. and Widdel,F. TITLE Anaerobic oxidation of hydrocarbons in crude oil by new types of sulphate-reducing bacteria JOURNAL Nature 372, 455-458 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80922|g633679 isolate_name= TD3 BASE COUNT 339 a 356 c 480 g 259 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-AAU -GNAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUGA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UCAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-A C-CCUG---G -GGUA-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GU 481 AU-GAG---- ---------- -------C-U AU-A--U-AC ---UAC-(-- --------UG 541 AG-------- -)-GUA---G UA-UA----U GG--GAAA-- ---GCGUGC- CUC-UG---- 601 --(------- ---GAAU--- ---)------ -----UA-A| -GCACG--C- G--CCC---- 661 ----UGGG-- AUG---G-|G UCUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCGA CGCC-GU-GU 961 G-A-GN-G-A A-GAA--G-N CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-UG 1021 --GG-GAA-- GA-AAGG-GU --AUG-GGU( U----AA-UA -----G---) CCUG-UA-CU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-A-CA G-AG--GAAG ---------C 1141 -ACCGGNC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UG- 1261 A-CC-AAG|U CAG---GUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCA-CUUG A-UAC-UGGU U-GGCUA-GA GUC-----UG G-CA-GAGGG UGG-N|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UGAAA)-UCC -GU-ACAU-A UC-GGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCC--AA-GA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -AU-GU-GGG -UC-CU---- ---------- 1681 -(GUA-GA)A ---------- ---------- ---------- -------GGG -GUCCG-NNU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- CUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGGG--- -AA----CCC 1981 -UGU-G--(- GAAA-)-CAC -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CCC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --AG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-CG -UA--CAAAG GGU-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCUA-AAAG -CG-C-ACC- CAAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- CU-CU-ACCC -GAA-G-UCG 3121 C-UGA-G-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.3.2 DMB.BACULATUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.3.2 DMB.BACULATUS_SUBGROUP. ORGANISM 2.14.4.3.2 DMB.BACULATUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s2. str. s2. ACCESSION No information KEYWORDS No information. SOURCE str. s2. str. s2. ORGANISM str. s2. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69306|g1181106 isolate_name= s2 BASE COUNT 84 a 68 c 115 g 69 t 4040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCA G-GGCUU-GA AUC-----CU G-GA-GAGGG UGG-C|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-CA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --S--(UAA- ---C)G-CG- UUAA-GUA.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dmb.bacul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfomicrobium baculatus. ACCESSION No information KEYWORDS No information. SOURCE Desulfomicrobium baculatus. ORGANISM Desulfomicrobium baculatus. REFERENCE 1 AUTHORS Devereux,R., He,S.-H., Doyle,C.L., Orkland,S., Stahl,D.A., LeGall,J. and Whitman,W.B. TITLE Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family JOURNAL J. Bacteriol. 172, 3609-3619 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37311 BASE COUNT 309 a 279 c 405 g 264 t 3119 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGN- 361 -R-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---G -GAUU-U-GG 421 -GAU-AA-CU C--------- ------UG-- C(-GAAA-)G -UGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-U NG-C--U--- ---UUA-(-- --------AA 541 UA-------- -)-AGA---- -A-GU----C GG--UAAA-- ---GGAUGC- CUC-U----- 601 --(------- ---GCAU--- ---)------ ------A-U| -GCAUU--C- G--UCC---- 661 ----GAGG-- AUG---A-|G CCCNU----- -GN|----CU C--RUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-RA- CGA------- -----UG-AG 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -RCUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCRA CGCC-GU-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-GR-NA 1021 --GG-GAA-- GA-ACGG-GS --ANU-GGU( C----UAAUA -----G---) GCNN-NN-NU 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCA G-GGNUU-GA AUC-----CU G-GA-GAGGG UNG-C|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-NA UURACG-CUN AG-G------ -------UG- C-NNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(CUN-NA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CR--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|N|G-CCU- N-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGGN--- -NA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGNG--- UG-------- --CNC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| UCC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNN|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- U-GUG-GA-G A-CU-G-NNC --GG(-GN-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGN-N UG-ACG--UN -A-AGUC-AU NAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -UA--CAAAG GGN-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CUCAA-AAAA -CC-C-AUC- AUNGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUNCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CYG-GGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.desuN4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio desulfuricans str. Norway 4 NCIMB 8310. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio desulfuricans str. Norway 4 NCIMB 8310. ORGANISM Desulfovibrio desulfuricans. REFERENCE 1 AUTHORS Devereux,R., He,S.-H., Doyle,C.L., Orkland,S., Stahl,D.A., LeGall,J. and Whitman,W.B. TITLE Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family JOURNAL J. Bacteriol. 172, 3609-3619 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37312 isolate_name= Norway 4 BASE COUNT 312 a 283 c 402 g 265 t 3114 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---G -GAUU-U-GG 421 -GAU-AA-CU C--------- ------UG-- C(-GAAA-)G -UGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-U NG-C--U--- ---UUA-(-- --------AA 541 UA-------- -)-AGA---- -A-GU----C GG--UAAA-- ---GGAUGC- CUC-U----- 601 --(------- ---GCGU--- ---)------ ------A-U| -GCAUU--C- G--UCC---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCNA CGCC-GU-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-GG-AA 1021 --GG-GAA-- GA-ACGG-GC --AUU-GGU( C----UAAUA -----G---) GCNN-NN-GU 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCA G-GGCUU-GA AUC-----CU G-GA-GAGGG UGG-C|GGGA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AANA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-NU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -NU-GU-CNN -NN-N----- ---------- 1681 -(CUU-GN)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-NN- UUAA-GUAUC C|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-U(-GUG A)-GGURU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-A |-UU--CUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NN-CU-C- U-RUG-GA-G A-CU-G-CCN --GG(-GU-N NA)-CCG-G- -NNGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -UA--CAAAG GGN-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CUCAA-AAAA -CC-C-AUC- AUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-NU)-G CCG-GGGUN- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Aspo1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Aspo1.. ACCESSION No information KEYWORDS No information. SOURCE clone Aspo1. ORGANISM clone Aspo1. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95570 BASE COUNT 371 a 344 c 480 g 304 t 2877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---G -GAUU-U-GG 421 -GAU-AA-CU C--------- ------UG-- C(-GAAA-)G -UGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-U GG-C--U--- ---UUA-(-- --------AA 541 UA-A------ -)-GAA---- ---GU----C GG--UAAA-- ---GGAUGC- CUC-UG---- 601 --(------- ---CAUA--- ---)------ -----UG--| --CAUU--C- G--UCC---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GU-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-GG-AA 1021 --GG-GAA-- GA-ACGG-GC --AUU-GGU( C----UAAUA -----G---) GCCU-UU-GU 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-AAC-UGCA G-GGCUU-GA AUC-----CU G-GA-GAGGG UGG-C|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGGG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC ---GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GUG-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CUCAA-AAAA -CC-C-AUC- AUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGG-A-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A G-GC-G--CU A-CGGU-AGG GCU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1080 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1080. str. SBR1080. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1080. str. SBR1080. ORGANISM str. SBR1080. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84512|g871633 isolate_name= SBR1080 BASE COUNT 104 a 86 c 131 g 83 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -NGG-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GA-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---G -GAUU-U-GG 421 -GAU-AA-CU U--------- ------CG-- C(-GAAA-)G -CGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-U GG-C------ ---UUU-(-- -------AAU 541 UA-A------ -)-GAA---- ---GU----C GG--UAAA-- ---GGAUGC- CU--CU---- 601 --(------- ---GUAU--- ---)------ -----AU--| -GCAUU--C- G--UCC---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-A|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GN-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dmb.escamb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfomicrobium escambium str. ESC1 ATCC 51164 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfomicrobium escambium str. ESC1 ATCC 51164 (T). ORGANISM Desulfomicrobium escambium. REFERENCE 1 AUTHORS Sharak Genthner,B.R., Mundfrom,G. and Devereux,R. TITLE Characterization of Desulfomicrobium escambium sp. nov., and proposal to assign Desulfovibrio desulfuricans strain Norway 4 to the genus Desulfomicrobium JOURNAL Arch. Microbiol. 161, 215-219 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51164 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02469 isolate_name= ESC1 BASE COUNT 325 a 293 c 417 g 273 t 3068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----ARAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-G C-CCUU---G -GAUU-U-GG 421 -AAU-AA-CU C--------- ------CG-- C(-GAAA-)G -UGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-U GG-C------ ---UUU-(-- -------UUU 541 AA-C------ -)-GAA---- ---GU----C GG--UAAA-- ---GGAUGC- CUC-U----- 601 --(------- ---GCAU--- ---)------ ------A-U| -GCAUU--C- G--UCC---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GU|----CU C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA UGCC-GU-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-GG-AA 1021 --GG-GAA-- GA-ACGG-GC --AUU-GGU( C----UAAUA -----G---) GCCU-UU-GU 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-UA G-AG--GAAG .......... 1141 .......... .........( .......... .........) .......... |...UG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -C|-GC-UU- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-CUUG A-AAC-UGCG A-AGCUU-GA AUC-----CU G-GA-GAGGG UGG-C|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGGG--- -AA----UCC 1981 -CGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GUG-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CUCAA-AAAA -CC-C-AUC- AUAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.3.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.3.3 DSV.DESULFURICANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.3.3 DSV.DESULFURICANS_SUBGROUP. ORGANISM 2.14.4.3.3 DSV.DESULFURICANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A6hq 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A6hq.. ACCESSION No information KEYWORDS No information. SOURCE clone A6hq. ORGANISM clone A6hq. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91429|g987734 BASE COUNT 86 a 70 c 120 g 71 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGGU G-UGCUU-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GS------- ---------- 1681 -(UAA-CG)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A8h 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A8h.. ACCESSION No information KEYWORDS No information. SOURCE clone A8h. ORGANISM clone A8h. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91431|g987736 BASE COUNT 87 a 70 c 119 g 71 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGAC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGGU G-UGCUU-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GS------- ---------- 1681 -(UAA-CG)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A9h 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A9h.. ACCESSION No information KEYWORDS No information. SOURCE clone A9h. ORGANISM clone A9h. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91432|g987737 BASE COUNT 80 a 61 c 110 g 63 t 4062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGGU G-UGCUU-AA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GS------- ---------- 1681 -(UAA-CG)- ---------- ---------- ---------- ---------C -UUCGG-UG. 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A7hq 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A7hq.. ACCESSION No information KEYWORDS No information. SOURCE clone A7hq. ORGANISM clone A7hq. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91430|g987735 BASE COUNT 86 a 70 c 119 g 72 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGUU G-UGCUU-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GS------- ---------- 1681 -(UAA-CG)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A10h 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A10h.. ACCESSION No information KEYWORDS No information. SOURCE clone A10h. ORGANISM clone A10h. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91433|g987738 BASE COUNT 78 a 61 c 100 g 62 t 4075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGUU G-UGCUU-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAG-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCAUCUG-- ---------- ---------- ---------G 1501 CCU--AA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CC-GU-UGG -G........ ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40789|g727156 BASE COUNT 124 a 100 c 162 g 91 t 3899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ......GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GN-(NNA A)-CCC-UGA NGCA|-GCGA CGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CUAC| UGUC-AA-GA 1021 --GG-GAA-- GA-AACU-GU --UAG-GCA( U----UAAUA -----C---) GGCC-UU-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-C-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-GC- 1261 A-AC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-CUUG A-AAC-UGUU G-UGCUA-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-NCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GU....... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s5 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s5. str. s5. ACCESSION No information KEYWORDS No information. SOURCE str. s5. str. s5. ORGANISM str. s5. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69309|g1181121 isolate_name= s5 BASE COUNT 83 a 72 c 120 g 67 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-CUUG A-AAC-UGGU G-UGCUG-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Aspo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Aspo2.. ACCESSION No information KEYWORDS No information. SOURCE clone Aspo2. ORGANISM clone Aspo2. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95230|g1166406 BASE COUNT 372 a 354 c 475 g 301 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CCUG---A -AGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-AUC---- ---------- -------C-U GC-AU----- ---AUU-(-- --------UA 541 AC-U------ -)-UUA---- ---UG----U GG--UAAA-- ---GGCGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUGC--C- G--CUU---- 661 ----UGGG-- AUG---A-|G UCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-CG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCGC| UGUC-AG-GA 1021 --GG-GAA-- GA-AACU-GU --UAG-GGU( A----UAAUA -----C---) GCCC-UU-UC 1081 ---------- -------A-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGGU G-CGCUG-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGAG--- -AA----UCU 1981 -UCC-C--(- GAAA-)-CGG -A-GGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -CA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-AUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UU-CU-ACCC -GAC-A-ACG 3121 G-CAGAC-UA -AC-CC---- ---------- ---------- -----(---- --UCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A G-UC-GU-CU A-CGGU-AGG GCU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s21 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s21. str. s21. ACCESSION No information KEYWORDS No information. SOURCE str. s21. str. s21. ORGANISM str. s21. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69325|g1181108 isolate_name= s21 BASE COUNT 84 a 71 c 119 g 68 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-CA-GC- 1261 A-UC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGGU G-MGCUG-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GUU-UA)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.profun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio profundus str. 500-1 DSM 11384. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio profundus str. 500-1 DSM 11384. ORGANISM Desulfovibrio profundus. REFERENCE 1 AUTHORS Bale,S.J., Rochelle,P.A., Goodman,K., Marchesi,J.R., Fry,J.C ., Weightman,A.J. and Parkes,R.J. TITLE Desulfovibrio profundus sp. nov., a novel barophilic sulphate reducing bacterium from deep sediment layers in the Japan Sea JOURNAL Int. J. Syst. Bacteriol. 47 in press (1997) STANDARD No information COMMENTS Organism information Culture collection: DSM 11384 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U90726|g1916940 isolate_name= 500-1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 346 a 307 c 426 g 287 t 3010 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCCG---A -AGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------C-U GC-AU----- ---AUU-(-- --------UA 541 AC-U------ -)-UUA---- ---UG----U GG--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----UGGG-- AUG---A-|G UCCGC----- -GU|----CU C--AUUA-G- AUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GUC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCGC| UGUC-AG-GA 1021 --GGGGAA-- GA-AACU-GU --UGG-AGU( C----GAAUA -----G---) GCUC-UU-UC 1081 ---------- ------AC-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- ACG-UAG-GU -G|-GC-AA- 1261 A-GU-CAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-UAC-UGCU U-UGCUA-GA GUC-----UC G-GA-GAGGU UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAG)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAACUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(-UA-AC)- ---------- ---------- ---------- --------CU -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-AUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUG-CC UAG-GC-UUG ACA-UC|--- ---------C ---UGAG--- -AA----CCU 1981 -CUU-U--(- UAAA-)-CGA -G-AGGG--- UG-------- --C-C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -AU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -UA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -UG-C-AUC- CCAGUCCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AG....).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spPIB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. PIB. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. PIB. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Krekeler,D., Sigalevich,P., Teske,A., Cypionka,H. and Cohen,Y . TITLE Aerobic respiration and versatile sulfur metabolism of a Desulfovibrio sp. strain PIB from oxic, hypersaline cyanobacterial mats JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U33316|g992696 isolate_name= PIB BASE COUNT 359 a 353 c 475 g 302 t 2887 others ORIGIN 1 .......... .......... .......... .......... ANAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAN-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCGA---C -AGAU-C-GG 421 -GAU-AA-CA G--------- ------GC-- G(-GAAA-)C -GCCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U UC-G------ ---UAU-(-- -------UUA 541 AC-U------ -)-UUA---- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAC--C- A--CUG---- 661 ----UCGG-- AUG---G-|G CCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-C-GG-G-A A-GAA--G-G NC(--UU-CG --)GG-UCGU AAA--CCGC| UGUC-AG-GA 1021 --GG-GAA-- GA-AACC-AU --UAG-AGU( C----GAAUA -----G---) GCUC-UU-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-GC- 1261 A-GU-AAG|U CAG---GGGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCU G-UGCUU-GA GGC-----UU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UCUUGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GC-C----- ---------- 1681 -(-GU-UG)- ---------- ---------- ---------- --------GG -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -NUC-U--(- UAAA-)-CGA -G-GGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GNUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-CA -UA--CAAAG GGU-A-G-C- UA-AAC-C(G 2881 -UGA)GGUC- ---------- AC-GCCAA-U CCCAA-AAAG -UG-U-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UC-UU-ACCC -GAC-G-UCG 3121 G-CAGGC-UA -AC-CU---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-G--CU A-CGGU-AAG GCU-GG-UA- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.halphl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio halophilus. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio halophilus. ORGANISM Desulfovibrio halophilus. REFERENCE 1 AUTHORS Tardy-Jacquenot,C, Magot,M, Laigret,F, Kaghad,M, Patel,B.K.C ., Guezennec,J, Matheron,R. and Caumette,P. TITLE Desulfovibrio gabonensis sp. nov., a new moderately halophilic sulfate-reducing bacterium oil isolated from an pipeline JOURNAL Int. J. Syst. Bacteriol. 46, 710-715 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48243 BASE COUNT 373 a 367 c 490 g 311 t 2835 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCGA---C -AGAU-C-GG 421 -GAU-AA-CA G--------- ------AU-- G(-GAAA-)C -GUCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U UC-A------ ---UAU-(-- -------UUG 541 AC-U------ -)-UUA---- ---UG----G GG--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAC--C- G--CUG---- 661 ----UCGG-- AUG---G-|G CCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCGC| UGUC-AG-GA 1021 --GG-GAA-- GA-AACC-AU --UAG-AGU( C----GAAUA -----G---) GCUC-UU-UU 1081 ---------- -------G-U U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( C--CAGCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-GC- 1261 A-GU-AAG|U CAG---GGGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCU G-UGCUU-GA GGC-----UU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UU CUGACG-CUG AC-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 NC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GC-C----- ---------- 1681 -(-GU-UG)- ---------- ---------- ---------- --------GG -UUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -CUC-U--(- UAAA-)-CGA -G-GGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GNU- 2281 AG--UUGG-C AG-CAAC--- ---------- ---------- ---A(---UA ---AU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AAU-GA-A G-CU-G-CCG --GG(-UU-U AA)-CCG-G- -GAAG-G-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-NC-C CUUAC-G-UC -CA--GGGC- 2821 N-ACA-CA-C GUA--CNACA AUGGC-G-CA -AA--CAAAG GGU-A-G-C- UA-ACC-C(G 2881 -UGA)GGUC- ---------- AA-GCCAA-U CCCCA-AAAG -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UC-UU-ACCC -GAC-G-UCG 3121 G-CAGGC-UA -AC-CU---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GC-CU A-CGGU-AAG GCU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGN--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Teske,A.P., Sigalevich,P., Cohen,Y. and Muyzer,G. TITLE Molecular identification of bacteria from a mixed culture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments enabling subsequent isolation in pure culture JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42995|g867689 NB: Near-complete 16S rRNA sequence of a Desulfovibrio strain (delta proteobacterial subdivision), isolated from a hypersaline cyanobacterial mat BASE COUNT 359 a 353 c 474 g 295 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-ANN -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCGA---C -AGAU-C-GG 421 -GAU-AA-CA G--------- ------AU-- G(-GAAA-)C -GUCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U UC-A------ ---UAU-(-- -------UUG 541 AC-U------ -)-UUA---- ---UG----G GG--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAC--C- A--CUG---- 661 ----UCGG-- AUG---G-|G CCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-AG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCGC| UGUC-AG-GA 1021 --GG-GAA-- GA-AACC-AU --UAG-AGU( C----GAAUA -----G---) GCUC-UU-NU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-GC- 1261 A-GU-AAG|U CAG---GGGU G-AAA-GC-C NN-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCC-UCUG A-UAC-UGCU G-UGCUU-GA GGC-----UU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--AG-UU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GC-C----- ---------- 1681 -(-GU-UG)- ---------- ---------- ---------- --------GG -UUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUGG--- -AA----UCC 1981 -CUC-U--(- UAAA-)-CGA -G-GGAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCA-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -UA--CAAAG GGU-A-G-C- UA-AGC-C(G 2881 -UGA)GGUC- ---------- AA-GCCAA-U CCCAA-AAAG -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UC-UU-ACCC -GAC-G-UCG 3121 G-CAGGC-UA -AC-CU---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GC-CU A-CGGU-AAG GCU-GG-UA- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.salexi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio salexigens. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio salexigens. ORGANISM Desulfovibrio salexigens. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34401 ATCC 14822 (T) = NCIMB 8403 NB: ATCC lists the former name of this organism as Desulfovibrio desulfuricans BASE COUNT 321 a 306 c 394 g 270 t 3085 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~...ACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGU-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CCAG---A -AGAC-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U UC-A------ ---UAU-(-- -------UUA 541 AC-U------ -)-NNA---- ---UN----A GA--GAAA-- ---GGUGGC- CUC-UN---- 601 --(------- ---UUU---- ---)------ -----CA-A| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---A-|G UCCGC----- -GU|----UU C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-AA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-AU-GU 961 G-A-GG-G-A C-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-RR-GR 1021 --RG-GAA-- GA-AACU-GU --UUG-ARG( C----UAAUA C----C---) CUNU-UU-CA 1081 ---------- -------C-U U-GA-CGGU- A-CCC-U-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-GC- 1261 G-AU-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCR-CUUG A-UAC-UGUC G-UGCUU-GA GUC-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GC-CU---- ---------- 1681 -(UAA-CC)- ---------- ---------- ---------- -------AGG -UUCGG-UGU 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGN 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---UGAG--- -AA----UCC 1981 -UCU-A--(- GAAA-)-UAG -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-NC-UGCA UG|G-CUN-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGN-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GA -UA--CAAAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGCC- ---------- GA-GCCAA-U CCCAA-AAAG -UC-C-RUC- CCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGUG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUN- AAUAC-GUU- CCC-GGG-CC .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40783|g727154 BASE COUNT 137 a 117 c 176 g 106 t 3840 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .....C-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-AU-GU 961 G-A-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCA-CA --UUA-GUC( U----AA-UA -----A---) ACCU-UU-UG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCA-CUUG A-UAC-UGCA U-UGCUU-GA GUA-----UC G-GA-GAGGA UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UNC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCNUCUG-- ---------- ---------- ---------G 1501 ACN--NU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GC-CU---- ---------- 1681 -(UAA-CC)- ---------- ---------- ---------- -------GGG -UUCNG-NGU 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Aspo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Aspo3.. ACCESSION No information KEYWORDS No information. SOURCE clone Aspo3. ORGANISM clone Aspo3. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95231|g1166407 BASE COUNT 384 a 345 c 468 g 309 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGU-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CCCU---G -AGAU-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-AG 481 AU-ACG---- ---------- -------C-U UC-A------ ---UAU-(-- -------UUA 541 AC-U------ -)-UUA---- ---UG----A GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAU--C- G--CUC---- 661 ----GAGG-- AUG---A-|G UCCGC----- -GU|----UU C--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UG-AA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-AU-GU 961 G-A-GG-G-A C-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACAA-CA --UAA-GGU( C----UAAUA -----A---) ACCU-UUUUG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C U--CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCA-CUUG A-UAC-UGCA U-UGCUU-GA GUA-----UC G-GA-GAGGA UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GA-G----- ---------- 1681 -(CUA-AC)- ---------- ---------- ---------- --------CU -UUCGG-UAU 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---UGAG--- -AA----UCC 1981 -UCU-A--(- GAAA-)-UAG -A-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCU- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-GA -UA--CAGAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAA-AAAA -UC-C-AUC- CCAGUCCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGUG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UU-CU-ACCC -AAA-A-UCG 3121 A-CGGAC-UA -AC-CU---- ---------- ---------- -----(---- --UCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A G-UC-GC-CU A-CGGU-AGG GCU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAG G(GUA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s8 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s8. str. s8. ACCESSION No information KEYWORDS No information. SOURCE str. s8. str. s8. ORGANISM str. s8. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69312|g1181124 isolate_name= s8 BASE COUNT 90 a 69 c 115 g 71 t 4031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAU- 1321 -UGCA-CUUG A-UAC-UGCA U-UGCUU-GA GUA-----UC G-GA-GAGGA UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GA-G----- ---------- 1681 -(CUA-AC)C ---------- ---------- ---------- --------CU -UUCGG-UAU 1741 CG--AA---- --GU-(UAA- ---C)G-CG- AUAA-GCAUC C|C|G-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.desuE1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio desulfuricans str. E1 Agheila Z NCIMB 8380. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio desulfuricans str. E1 Agheila Z NCIMB 8380. ORGANISM Desulfovibrio desulfuricans. REFERENCE 1 AUTHORS Devereux,R., He,S.-H., Doyle,C.L., Orkland,S., Stahl,D.A., LeGall,J. and Whitman,W.B. TITLE Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family JOURNAL J. Bacteriol. 172, 3609-3619 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37316 isolate_name= E1 Agheila Z BASE COUNT 299 a 290 c 393 g 266 t 3128 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UAAUUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -NAAC-GC-- UNGA-GGC-G -UNC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NAYU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-NCGU- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CUA--CCU-G C-CCAG---A -CGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GN 481 AU-ACG---- ---------- -------A-A UC-------- ---AAU-(-- --------UU 541 AU-------- -)-NUU---- ----G----G UU--GAAA-- ---GGGUGC- CUC-UG---- 601 --(------- ---AAU---- ---)------ -----UA-U| -GCAUC--H- N--NGU---- 661 ----CUNG-- AUG---G-|G CCCGC----- -GU|----CU C--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-NAC-GG) -C-CUACC-A A|-GGC-NA- CGA------- -----UG-AG 781 U-AG-C-UN| -G-UUU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-NAUAUU G-CGCNAU-- GG-GG-(GAA A)-CCC-CNA CGCA|-GCGA CGCC-UC-GU 961 G-A-GG-G-A A-GAA--G-G CN(--NU-CG --)GG-UYGU NAA--CCUC| UGUC-GG-AA 1021 --GG-GAA-- GA-AAUG-UA --UAU-GUG( U----UAAUA -----G---) CGCA-UN-UG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A AAUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAU |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UNAA-GCGU- GCG-UAG-GC -U|-GC-CU- 1261 G-UU-AAG|U CAG---GUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-NAU- 1321 -UGCA-CUUG A-UAC-UGAC A-GGNNU-GA GUC-----CU N-NA-GAGGA UNG-C|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACW-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CNAUCUG-- ---------- ---------- ---------G 1501 ACA--GG-GA CUGACG-CUG AG-G------ -------UN- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CN-- -------N|G -GU-GU-CGG -GG-GG---- ---------- 1681 -(AUU-CC)- ---------- ---------- ---------- -------UUC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CR- UUAA-GCAUC N|G|C-CUN- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUGG--- -AA----UCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGNG--- UG-------- --NCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CCA-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUR-- UCG-UCA|-G C-U---CG-U |GC-C(-GUA A)-GGUAU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 AG--UUGC-C AU-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 N-NA-CU-C- U-GNN-NA-G N-CU-G-NCU --GG(-GN-N AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGN-N CG-ACG--UC -N-AGUC-AU CAU-G-GC-C CUUAC-G-CC -NA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-G-GG -UA--CRAAG GGC-N-S-N- UA-CGC-C(G 2881 -CGA)GGCC- ---------- AA-GCCAA-U CCCNA-AAAG -CC-C-NUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUN-AUC 3001 CU-GGA-(UC -NGC-RU)-G CCA-GGGUN- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.longus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio longus str. SEBR 2582. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio longus str. SEBR 2582. ORGANISM Desulfovibrio longus. REFERENCE 1 AUTHORS Magot,M., Caumette,P., Desperrier,J.M., Matheron,R., Dauga,C ., Grimont,F. and Carreau,L. TITLE Desulfovibrio longus sp. nov., a sulfate-reducing bacterium isolated from an oil-producing well JOURNAL Int. J. Syst. Bacteriol. 42, 398-403 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63623 isolate_name= SEBR 2582 BASE COUNT 332 a 343 c 439 g 283 t 2979 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UUCCCUG AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GGU -GAAC-GC-- UAGC-GGC-G -CGC-CU--A ACCC-AUGCA A-GUC-NAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UGA--UCU-A C-CCUU---A -GGAU-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CC-A------ ---UAU-(-- ------UUAG 541 CU-------- -)-UUU---- ---UG----G AU--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CAUG--- ---)------ -----CA-A| -GCUAC--C- A--CCU---- 661 ----AAGG-- AUG---A-|A CCUGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACN-A A|-GGC-GA- CGA------- -----UG-AG 781 U-AG-C-UG| -A-UCU--(G -GGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC .(....)... .......... .......... 901 .......... .......... ......(... .).......A CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G -C(--UU-CG --)GGUUCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACC-CU --UGA-GGG( N----GAAUA -----G---) GCCU-CU-UG 1081 ---------- -------G-C U-GA-CGGU- A-CCU-U-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-GC- 1261 G-GU-CAG|U CAG---AUGU G-AAA--C-C -U-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCA-UUUG A-UAC-UGCC G-UGCUC-GA GUA-----CU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCANNG- UUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------UN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(-GG-UU)- ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-G...... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 ANCCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---UNAG--- -AA----CCC 1981 -UCC-C--(- GAAA-)-ANG -G-AGGNN-- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| UUC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--UCU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GG(-GU-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-CG -UA--CAAAG GGU-U-G-C- AA-AGC-C(G 2881 -CGA)GGCA- ---------- AC-GCCNA-U CCCAA-AAAA -CG-U-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-AGA-(UC -AGA-AU)-G CUG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACAUA- --CCA-CGUA AA-GC-UGG- UU-CU-ACCC -GAC-A-UCG 3121 G-CAA-G-CU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CU A-CGGU-AGG ACC-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.spRS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RS-1. str. RS-1. ACCESSION No information KEYWORDS No information. SOURCE str. RS-1. str. RS-1. ORGANISM str. RS-1. REFERENCE 1 AUTHORS Kawaguchi,R., Burgess,J.G., Sakaguchi,T., Takeyama,H., Thornhill,R.H. and Matsunaga,T. TITLE Phylogenetic analysis of a novel sulfate-reducing magnetic bacterium, RS-1, demonstrates its membership of the delta-Proteobacteria JOURNAL FEMS Microbiol. Lett. 126, 277-282 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D43944|g902925 isolate_name= RS-1 BASE COUNT 180 a 177 c 245 g 144 t 3630 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGGG-AC (--UU----- ---------- ---------- 241 -------CCG -)GU-CCCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGCG-GUGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UUA--UCU-A C-CCAG---A -UAUU-C-GG 421 -GAU-AA-CG G--------- ------CGG- G(GGAAA-)C -UGCC-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CC-A------ ---AU--(-- --------UU 541 CG-------- -)--GU---- ---UG----G ----GAAA-- ---GGCGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUGU--C- G--UAU---- 661 ----CUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUUG-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU.. ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .......UU| GAAU-AA-AU 1021 --CC-CUG-- GG-AA----- ---------( ------CUUG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- ACCCUUCCCA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUU( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-AC -C|-GC-CU- 1261 U-UU-AAG|U CGG---ACGU G-AAA-GC-C CU-CGG-C(- UC-A)C-CCG -AG-G-AAC- 1321 -UGCG-UUCG A-AAC-UGGG A-GGCUU-GA GUC-----CU G-GA-GAGGG UGG-C|GGAA 1381 UU-CCGGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUAA G......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio africanus.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio africanus. ORGANISM Desulfovibrio africanus. REFERENCE 1 AUTHORS Amann,R.I., Stromley,J., Devereux,R., Key,R. and Stahl,D.A. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information REFERENCE 2 AUTHORS Devereux,R., He,S.-H., Doyle,C.L., Orkland,S., Stahl,D. A., LeGall,J. and Whitman,W.B. TITLE Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family JOURNAL J. Bacteriol. 172, 3609-3619 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37315 BASE COUNT 296 a 294 c 393 g 227 t 3166 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~...ACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A NNAC-AUNCA A-GUC-GUGN 121 G--------- -----AGANA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUYG-GY (--UU----- ---------- ---------- 241 --------CG -)GC-CCGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------G AGUACA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-C C-CUAA---C -AGAU-U-GG 421 -GAU-AA-CA G--------- ------CG-- G(-GAAA-)C -UGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-U CC-A------ ----CU-(-- --------UA 541 AU-------- -)-CG----- ---UG----G AU--GAAA-- ---GGCGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUGC--N- A--CUG---- 661 ----UUAG-- AUG---R-|R CCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-A-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACC-CC --CAA-GG-( ------UUCG ---------) -AAU-AG-GG 1081 .......... .......... .......... .......... ..AG--GAAG ---------C 1141 -ACCGGCU-A AUUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAA |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UNAA-GCGC- ACG-UAG-GC -U|-GC-UU- 1261 U-GU-AAG|U CGG---AUGU G-AAA-GC-C CU-CGG-C(- CC-A)A-CCG -GG-N-NAC- 1321 -UGCA-UUCG A-AAC-UGCA A-GGCUG-GA GUC-----CU G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACA--GG-UA CURACG-CUG AG-G------ -------UG- C-NNAA-GU- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NRC- A-CC-GU--A 1621 AAC-G-AUGG A--UR-CU-- -------A|G -NU-GU-CGG -GG-NG---- ---------- 1681 -(-UA-UU). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUCG--- -AA----CCU 1981 -UCC-A--(- GAGA-)-UGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CGA-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GCC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCC --GG(-GU-N NA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UN -CA--RGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-AC -CA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUN- ---------- AN-GCCAA-U CCCAA-AAAG -UC-C-GUC- CCAGUCCGGA 2941 U-UGCNGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUA-NGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.gigas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio gigas. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio gigas. ORGANISM Desulfovibrio gigas. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34400 ATCC 19364 (T) = NCIMB 9332 BASE COUNT 310 a 303 c 393 g 243 t 3127 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- URGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGANN ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-ACCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAC---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUCA---U -UGRC-C-GG 421 -GAU-AA-CG G--------- ------UG-- G(-GAAA-)C -CGCU-G--C UAAUACU-GG 481 AU-ACG---- ---------- -------C-U UC-A------ ----UG-(-- --------GA 541 AA-------- -)-CA----- ---UG----A GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---AUU---- ---)------ -----UA-A| -GCURU--C- A--CAA---- 661 ----UGAG-- AUG---A-|G UCCGC----- -GU|----CU C--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-AG 781 U-AG-C-GG| -C-CCU--(G -AGA)-GGGU ----GG-C-- CRG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---RU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-UG-GA 1021 --GG-AAA-- GA-AACC-CA --UAG-GUG( U----GAAUA -----G---) GGCU-UA-UG 1081 ---------- -------G-C U-GA-CGGU- A-CCU-C-CG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-CU- 1261 U-GC-AAG|U CAG---GUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -GG-G-AAC- 1321 -UGCA-CUUN A-AAC-UGCA U-GACUU-GA GUA-----CA G-GA-GAGGA UGG-C|AGAA 1381 UU-CCGGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAU-A UC-CGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACU--GU-CA CUGACG-CUG AG-G------ -------UG- C-RNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--CG-CU-- -------N|G -GU-RU-CGR -GG-G----- ---------- 1681 -(GUC-GC)- ---------- ---------- ---------- --------CC -CUCGG-CGC 1741 CG--AA---- --NC-(UAA- ---C)G-CG- UUNA...... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CGGG--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGNN--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AG---| CCC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUR-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CAU- 2281 AG--UUGC-C NN-NNG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUN|G 2701 N-CA-CU-C- U-AUG-GA-G A-CU-G-CCU --UG(-G--C AA)-CAA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-AG -UA--CAAAG GGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-U CCCAA-AAAG -CU-M-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.gabonn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio gabonensis. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio gabonensis. ORGANISM Desulfovibrio gabonensis. REFERENCE 1 AUTHORS Tardy-Jacquenod,C., Magot,M, Laigret,F, Kaghad,M, Patel,B.K .C., Guezennec,J., Matheron,R. and Caumette,P. TITLE Desulfovibrio gabonensis sp. nov., a moderately halophilic sulfate-reducing bacterium isolated from an oil pipeline JOURNAL Int. J. Syst. Bacteriol. 46, 710-715 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31080|g1039412 SEBR 2840 = DSM 10636 (T) BASE COUNT 336 a 357 c 462 g 262 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A--UC-GAGC 121 G--------- -----AGAAA G--------- ---------- ---------- ---------- 181 ---------- ---------- ----UCC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAC---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-G C-CCUG---A -AGAU-C-GG 421 -GAU-AA-CA G--------- ------UG-- G(-GAAA-)C -CGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U UU-A------ ---CGU-(-- --------UA 541 AU-------- -)--CG---- ---UA----A GG--GAAA-- ---GGUGGC- CUC-UC---- 601 --(------- ---GGU---- ---)------ -----GA-A| -GCUAC--C- A--CUU---- 661 ----UGGG-- AUG---A-|G UCCGC----- -GU|----CU C--AUUA-G- CUA-G---AC 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-G U|-GGC-UA- CGA------- -----UG-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCC-CG --AGG-AUG( C----GAAUA -----G---) UGUC-UU-CG 1081 ---------- -------G-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GCG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GC-UA- 1261 U-GC-AAG|U CAG---GCGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-CUUG A-AAC-UGCG U-AGCUU-GA GUU-----CA G-GA-GAGGG UAG-C|GGAA 1381 UU-CCCGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--CG-UU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-ACGUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGCG--- -UA----CCC 1981 -UCC-C--(- GAAA-)-CGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CGC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --CG(-GU-C AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-GA -UA--CAAAG GGU-U-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AC-GCCAA-U CCCAA-AAAG -UC-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGUA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- UU-CU-ACCC -GAA-G-UCG 3121 C-CGA-G-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91272|g987020 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 90 a 75 c 118 g 66 t 4027 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCU -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GU-CU- 1261 U-GC-AAG|U CAG---ACGU G-AAA-UCCC CU-UGG-C(- UC-A)A-CCG -AG-G-AAU- 1321 -UGCG-UUUG A-AAC-UGCA G-GACUG-GA GUA-----CU G-GAAGAGGG UGG-C|GGAA 1381 UU-CCCGGU- GUAAGGA(-G UGAAA)-UCC -GU-AGAU-A UC--GGAGG- AACA-CCAG- 1441 -U-G-GC(-G AAAG)GCGG- CCCACCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-MUG AA-GG----- -------UG- C-GAAAAGC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.61890E 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Fox,J.G., Dewhirst,F.E., Fraser,G.J., Paster,B.J., Shames,B. and Murphy,J.C. TITLE Intracellular Campylobacter-like organism from ferrets and hamsters with proliferative bowel disease is a Desulfovibrio sp JOURNAL J. Clin. Microbiol. 32 (5), 1229-1237 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07569|g476298 BASE COUNT 131 a 103 c 170 g 95 t 3877 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|.....GA- UGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(A -AGA)-GGAU ----AA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAN A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-UG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AAUG-GA --UAG-GCU( C----UAAUA -----G---) GGUC-UA-UU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-CCG-C(- UU-A)A-CGG -UG-G-AAC- 1321 -AGCC-UUUG A-UAC-UGUA U-AACUU-GA GUA-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA. 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Mescau 4376 bp RNA RNA 02-JUL-1998 DEFINITION intracellular ileal. ACCESSION No information KEYWORDS No information. SOURCE intracellular ileal. ORGANISM intracellular ileal. REFERENCE 1 AUTHORS Peace,T.A., Brock,K.V. and Stills,H.F. Jr. TITLE Comparative analysis of the 16S rRNA gene sequence of the putative agent of proliferative ileitis of hamsters JOURNAL Int. J. Syst. Bacteriol. 44, 832-835 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06423|g497118 symbiont_of= intracellular ileal symbiont of Mesocricetus auratus isolate_name= Auratus BASE COUNT 394 a 333 c 473 g 311 t 2865 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUUC---G -AGAC-G-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-A UU-A--U-GG ---UAA-(-- --------AA 541 AG-------- -)-UUG---- ---UA----G UG--CAAA-- ---GGGUAGC CUC-UG---- 601 --(------- ---UAUG--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-UG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(A -AGA)-GGAU ----AA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-UG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AAUG-GA --UAG-GCU( C----UAAUA -----G---) GGUC-UA-UU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG -------AAC 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-CCG-C(- UU-A)A-CGG -UG-G-AAC- 1321 -AGCC-UUUG A-UAC-UGUA U-AACUU-GA GUA-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGG -GG-A----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------U ---GAGG--- -GA----CUC 1981 -UUA-A--(- GAGA-)-UUA -A-GAGG--- UG-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCU-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AAGGG-UU-A |-UC--UUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CUC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGC-AU)-G C-C-C--UG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-UU-ACCC -AAA-G-CCG 3121 G-CGA-G-CU -AA-CGA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UCGAGG-C-A G-UC-GU-CU A-CGGU-AGG GCU-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lw.intcell 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lawsonia intracellularis str. 1482/89 NCTC 12656 (T). ACCESSION No information KEYWORDS No information. SOURCE Lawsonia intracellularis str. 1482/89 NCTC 12656 (T). ORGANISM Lawsonia intracellularis. REFERENCE 1 AUTHORS McOrist,S., Gebhart,C.J., Boid,R. and Barns,S.M. TITLE Characterization of Lawsonia intracellularis gen. nov., sp. nov., the obligately intracellular bacterium of porcine proliferative enteropathy JOURNAL Int. J. Syst. Bacteriol. 45, 820-825 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12656 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U30147|g927275 isolate_name= 1482/89 symbiont_of= Sus scrofa BASE COUNT 381 a 327 c 458 g 299 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUUC---G -AGAC-G-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-A UU-A--U-GG ---UAA-(-- --------AA 541 AG-------- -)-UUG---- ---UA----G UG--CAAA-- ---GGGUAGC CUC-UG---- 601 --(------- ---UAUG--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-UG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(A -AGA)-GGAU ----AA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-UG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AAUG-GA --UGG-GCU( C----UAAUA -----G---) GGUC-UA-UU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-NGAN |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-CCG-C(- UU-A)A-CGG -UG-G-AAC- 1321 -AGCC-UUUG A-UAC-UGUA U-AACUU-GA GUA-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGG -GG-A----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGAUC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------U ---GAGG--- -GA----CUC 1981 -UUA-A--(- GAGA-)-UUA -A-GAGG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CUC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-UU-ACCC -AAA-G-CCG 3121 G-CGA-G-CU -AA-CGA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UCGAGG-C-A G-UC-GU-CU A-CGGU-AGG GCU-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sp599 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. MIT 87-599. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. MIT 87-599. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Fox,J.G., Dewhirst,F.E., Fraser,G.J., Paster,B.J., Shames,B. and Murphy,J.C. TITLE Intracellular Campylobacter-like organism from ferrets and hamsters with proliferative bowel disease is a Desulfovibrio sp. JOURNAL J. Clin. Microbiol. 32, 1229-1237 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07570|g476299 nat_host= ferret isolate_name= MIT 87-599 BASE COUNT 354 a 310 c 432 g 274 t 3006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUUC---G -AGAC-G-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-A UU-A--U-GG ---UAA-(-- --------AA 541 AG-------- -)-UUG.... .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ........GG 781 U-AG-C-CG| -A-UCU--(A -AGA)-GGAU ----AA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG.... .......... ..(...U-UG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AAUG-GA --UGG-GCU( C----UAAUA -----G---) GGUC-UA-UU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-CCG-C(- UU-A)A-CGG -UG-G-AAC- 1321 -AGCC-UUUG A-UAC-UGUA U-AACUU-GA GUA-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGG -GG-A----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------U ---GAGG--- -GA----CUC 1981 -UUA-A--(- GAGA-)-UUA -A-GAGG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CUC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-UU-ACCC -AAA-G-CCG 3121 G-CGA-G-CU -AA-CGA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UCGAGG-C-A G-UC-GU-CU A-CGGU-AGG GCU-AA-UG- AUU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Sus_sc 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Gebhart,C.J., Barns,S.M., McOrist,S., Lin,G.-F. and Lawson,G .H. TITLE Ileal symbiont, 'IS-intracellularis': An obligate intracellular bacterium of porcine intestines showing a relationship to Desulfovibrio species JOURNAL Int. J. Syst. Bacteriol. 43, 533-538 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15739 isolate_name= 1482/89 symbiont_of= Sus scrofa BASE COUNT 399 a 345 c 484 g 321 t 2827 others ORIGIN 1 .......... .......... .......... ...AAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU--C (--UU----- ---------- ---------- 241 --------CG -)GG-AU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUUC---G -AGAC-G-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-A UU-A--U-GG ---UAA-(-- --------AA 541 AG-------- -)-UUG---- ---UA----G UG--CAAA-- ---GGGUAGC CUC-UG---- 601 --(------- ---UAUG--- ---)------ -----UA-A| -CGUAU--C- G--CUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-UG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(A -AGA)-GGAU ----AA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-UG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AAUG-GA --UGG-GCU( C----UAAUA -----G---) GGUC-UA-UU 1081 ---------- -------U-U U-GA-CGGU- A-CCC-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-NGAN |-NGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-UA- 1261 U-AU-AAG|U CAG---GGGU G-AAA-GC-C CA-CCG-C(- UU-A)A-CGG -UG-G-AAC- 1321 -AGCC-UUUG A-UAC-UGUA U-AACUU-GA GUA-----UC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGG -GG-A----- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------U ---GAGG--- -GA----CUC 1981 -UUA-A--(- GAGA-)-UUA -A-GAGG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCU-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AU-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CUC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-UU-ACCC -AAA-G-CCG 3121 G-CGA-G-CU -AA-CGA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UCGAGG-C-A G-UC-GU-CU A-CGGU-AGG GCU-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blp.wadswr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bilophila wadsworthia.. ACCESSION No information KEYWORDS No information. SOURCE Bilophila wadsworthia. ORGANISM Bilophila wadsworthia. REFERENCE 1 AUTHORS Wexler,H., Finegold,S., Wilson,K. and Duncan,J. TITLE Species specific probe for Bilophila wadsworthia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35148|g530871 BASE COUNT 333 a 341 c 443 g 252 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... GAGUAA---- ---|------ AGUG-GNGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CCUU---A -AGAU-G-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-C------ ---GAU-(-- -------UUU 541 AU-C------ -)-AUU---- ---GG----G GG--GAAA-- ---GAUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAU--C- G--CUU---- 661 ----AAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--CU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-GG 1021 --GG-GAA-- GA-AACC-CC --CUC-GUG( U----GAAUA -----A---) UGCG-AG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCC-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CAG-C(- CC-A)A-CUG -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGCC A-GGCUU-GA GUA-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------G|G -GU-GC-UGG -GA-U----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------GU -CUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------U ---AGGG--- -AA----CCC 1981 -UUC-G--(- GAAA-)-UGA -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CC-C-CCC --CG(-GU-C AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CG -CA--CAAAG GGU-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CU -AA-C..... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spKH2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. KH2. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. KH2. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Kuhnigk,T., Branke,J., Krekeler,D., Cypionka,H. and Koenig,H . TITLE A feasible role of sulfate-reducing bacteria in the termite gut JOURNAL Syst. Appl. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93147|g1070146 isolate_name= KH2 BASE COUNT 355 a 373 c 491 g 286 t 2871 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-G C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 AU-------- -)-AGUU--- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UUUG--- ---)------ -----CA-A| -GCUAC--C- G--CUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --AUG-GUG( C----UA-AU -----C---) AGCC-AU-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GUGC- ACG-UAG-GC -U|-GU-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-CUUG A-UAC-UGCU G-GACUU-GA GUU-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---GGGA--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CAU- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-GA-G A-CC-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-N-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -CA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAU-A-CCG 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.termit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio termitidis.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio termitidis. ORGANISM Desulfovibrio termitidis. REFERENCE 1 AUTHORS Branke,J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87409|g971390 BASE COUNT 350 a 368 c 484 g 284 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-G C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 AU-------- -)-AGUU--- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAC--C- G--CUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --AUG-GUG( C----UA-AU -----C---) AGCC-AU-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GAU- 1321 -UGCC-CUUG A-UAC-UGCU G-GACUU-GA GUU-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UNC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UNAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G NNA)---G-G NU-GAAACUC -AAA-GAAAU UG-ACGGG-N -N-C-CC--G 1861 C-A--CA-AG CG-UGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---GGGA--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCC-CG-AGA |---C|A--G 2161 GU-GC-UGCN UG|G-NUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CAU- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-GA-G N-NN-N-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-N-NC -UN--NGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -CA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAU-A-CCG 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CNNNG UAGCC-GUAG G(GGA-A)CC UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spPT2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. PT-2. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. PT-2. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Kane,M.D., Poulsen,L.K., Lars,K. and Stahl,D.A. TITLE Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally-derived 16S rRNA sequences JOURNAL Appl. Environ. Microbiol. 59, 682-686 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M98496 isolate_name= PT-2 BASE COUNT 357 a 380 c 486 g 292 t 2861 others ORIGIN 1 .......... .......... .......... ....AACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUGAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-G C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 AC-------- -)-AUUU--- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAC--C- G--UUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --AUG-GUG( C----UA-AU -----C---) AGCC-AU-NG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C GG-NNN-C(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-CUUN A-UAC-UGCU G-GACUU-GA GUU-----CG G-GA-GAGGG UGC-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGN-N---(N CAA)---G-G CU-CCAACUC -AAA-NNAAU U--ACGGG-G -G-C-CN--G 1861 C-A--GA-AG CGG....... .......... .UUNNUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---GGGA--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGM--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UNA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-AUG-GA-G A-CC-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -UG--GGGC- 2821 U-ACA-CU-C GUA--CUACA AUGGC-G-CA -CA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAU-A-CCG 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(-GA-A)CC UGCGGC--UG GACCACCUCC 3361 UUU.|...~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.lonrch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio longreachii str. 16910a. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio longreachii str. 16910a. ORGANISM Desulfovibrio longreachii. REFERENCE 1 AUTHORS Redburn,A.C. and Patel,B.K. TITLE Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA JOURNAL FEMS Microbiol. Lett. 113, 81-86 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z24450|g415336 (bases 1 to 1518) isolate_name= 16910a BASE COUNT 361 a 382 c 492 g 282 t 2859 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUNC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------U GAGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-G C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 AC-------- -)-AGUU--- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAC--C- G--CUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UG 721 GG-GC-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --AUG-GUG( C----UA-AU -----C---) AGCC-AU-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CUUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-CU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-CUUG A-UAC-UGCU G-GACUU-GA GUU-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GG-AGUAC 1801 GGUAC---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGAGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---GGGA--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| UCC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CC-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -CA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAU-A-CCG 3121 G-UGAUG-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Devereux,R., Stromley,J. and Amann,R.I. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80617 legacy_attribute= biovar:population type 1 BASE COUNT 129 a 127 c 182 g 101 t 3837 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --AUG-GUG( C----UAAUC ---------) AGCC-AU-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-CUUG A-UAC-UGCU G-GACUU-GA GUU-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--CA---- --SS-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(U CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG.. .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.vulgar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough DSM 644 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough DSM 644 (T). ORGANISM Desulfovibrio vulgaris. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 644 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34399 DSM 644 (T) = NCIMB 8303 isolate_name= Hildenborough BASE COUNT 307 a 315 c 417 g 247 t 3090 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GNGC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GY-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGCG-GCGC- 361 -R-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 RA-------- -)-CNU---- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAC--U- G--CUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACN-A A|-GGC-GA- CRA------- -----UG-GG 781 N-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 R-A-GG-G-A U-GAA--G-G UC(--CU-CG --)GA-UCGU NAA--CCUC| UGUC-NG-GA 1021 --GG-GAA-- GA-ACCG-CC --ACG-GUG( C----UN-AU -----C---) AGCC-GU-NG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GC-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-GN-N CG-CGG-C(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGCC A-AGCNA-GA GUC-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCM -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GG-NA CUGACG-CUN AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-RU-CGG -GG-C----- ---------- 1681 -(CUU-GA)R ---------- ---------- ---------- --------RC -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAAU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G C..)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------C ---GGAA--- -GA----CCU 1981 -UCC-C--(- GAAA-)-AGG -A-AGGN--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCC- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU NAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -UA--CAAAG GGC-A-G-C- GA-UAC-C(R 2881 -CRA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAG -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CNC-GGGUG- AAUNC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spDMB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. DMB. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. DMB. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Magli,A., Rainey,F.A. and Leisinger,T. TITLE Acetogenesis from dichloromethane by a two-component mixed culture comprising a novel bacterium JOURNAL Appl. Environ. Microbiol. 61, 2943-2949 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86689|g953177 isolate_name= DMB BASE COUNT 359 a 370 c 492 g 284 t 2871 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCGC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------C GAGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CCAU---G -AGUU-G-GG 421 -AAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGUC-N--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CC-G------ ---AUU-(-- --------UC 541 AA-------- -)-CUUU--- ---CG----G GG--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAC--U- G--CUC---- 661 ----AUGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--CU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCG-CC --ACG-GUG( C----UA-AU -----C---) AGCC-GU-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GC-UU- 1261 G-GU-AAG|U CAG---GGGU G-AAA-GC-C CG-CGG-N(- UC-A)A-CCG -CG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGCC G-AGCUA-GA GUC-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAG-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------GC -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------C ---GGAA--- -GA----CCU 1981 -UCC-C--(- GAAA-)-AGG -A-AGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GCC- 2281 AG--UUGC-U AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -UA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAG -UG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-UU-ACCC -GAC-A-CCG 3121 G-UGAGC-UA -AC-CA---- ---------- ---------- -----(---- -GCAAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.G3_100 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Dang,P.N., Dang,T.C.H., Lai,T.H. and Stan-Lotter,H. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93994|g1103559 BASE COUNT 363 a 363 c 488 g 289 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUC-C- (--UU----- ---------- ---------- 241 --------CG -)GG-GAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--UCU-A C-CUGC---A -UCAC-C-GG 421 -AAU-AA-CG G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUGCC-GG 481 AU-AGU---- ---------- ---------- ---------- ---CUU-(-- --------GA 541 AA-------- -)-GGG---- ---------- ----UAAA-- ---GGGGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUUC--C- G--GGU---- 661 ----GCUG-- AUG---A-|G UCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-AG| -G-UUU--(G -AGA)-GGAU ----GA-C-- CUG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C GCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CUCC| UGUC-AA-GA 1021 --GG-GAA-- GA-ACCG-UA --UGC-GGA( A----UAAUA -----C---) ACCG-CA-UG 1081 ---------- -------C-C U-GA-CGGU- A-CCU-C-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GC-UU- 1261 G-GU-AAG|U CAG---GUGU G-AAA-GC-C CC-CGG-U(- CC-A)A-CCG -GG-G-AAU- 1321 -UGCA-CUUG A-UAC-UGCU A-GGCUA-GA GUU-----CA G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACU--GA-CA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------UC -CUCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---GGAG--- -AA----UCC 1981 -CUC-C--(- GAAA-)-AGA -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUC-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -UA--CAAAG GGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -UG-C-GUC- UCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-GUA-(UC -AUC-AU)-G ACG-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UU-CU-GCCC -GAC-G-CCG 3121 A-UGAGC-UA -AC-CC---- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-UC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.acryli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio acrylicus str. W218 DSM 10141 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio acrylicus str. W218 DSM 10141 (T). ORGANISM Desulfovibrio acrylicus. REFERENCE 1 AUTHORS van der Maarel,M.J.E.C., van Bergeijk,S., van Werkhoven,A.F., Laverman,A.M., Meijer,W.G., Stam,W.T. and Hansen,T.A. TITLE Cleavage of dimethylsulfoniopropionate and reduction of acrylate by Desulfovibrio acrylicus sp. nov. JOURNAL Arch. Microbiol. 166, 109-115 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10141 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32578|g1098663 isolate_name= W218 BASE COUNT 348 a 313 c 418 g 275 t 3022 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A C-CUAU---U -GGUA-C-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GU 481 AU-ACG---- ---------- ---------- ---------- ---CUG-(-- --------GA 541 AA-------- -)-CGG---- ---------- ----GAAA-- ---GGGGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUCU--C- G--CCA---- 661 ----GUAG-- AUG---A-|G UCCGC----- -GU|----UU C--AUUA-G- CUA-G---AC 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-G U|-GGC-AA- CGA------- -----UG-AA 781 U-AG-C-AG| -G-CCU--(G -AGA)-GGGU ----GG-C-- CUG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CUCC| UGUC-AA-GA 1021 --GG-GAA-- GA-AACC-UG --UUA-AGA( A----UAAUA -----C---) UCUU-AG-CA 1081 ---------- -------A-U U-GA-CGGU- A-CCU-C-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A AUUCA-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-UGAA |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- UCG-UAG-GU -G|-GC-UU- 1261 U-GU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCA-CUUG A-UAC-UGCA U-CGCUA-GA GUA-----UA G-GA-GAGGG AAG-U|GGAA 1381 UU-UCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAG-A UC-AGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|A -GU-GU-CGG -AG-G----- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-GC-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UGC 1981 -CCA-A--(- GAAA-)-UUA -G-GCAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UGC-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AC-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UG--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-G-CA -UA--CAAAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAG -UG-C-AUC- CCAGUCCGGA 2941 U-AGGAGUC- (UGCAAC-U- C)-GACUCCU -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G C-C-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dms.pigra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfomonas pigra. ACCESSION No information KEYWORDS No information. SOURCE Desulfomonas pigra. ORGANISM Desulfomonas pigra. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34404 BASE COUNT 321 a 294 c 387 g 250 t 3124 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.GAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NGGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 GA-CG-GG-U GAGU---AAC GAC-GUGGA- UAA--UCU-G C-CUCU---A -UGAU-G-GG 421 -NAU-AA-CR G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------C-U CA-U------ ----GA-(-- --------UG 541 A--------- -)-NC----- ---UU----G UG--GAAA-- ---GGUGGC- CUN-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUAU--C- G--CAU---- 661 ----AGAG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACU-AG --GG--UGC( U---CUAAUC -----A---) UCAU-CC-UA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-NU-UA- 1261 U-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGCA C-GGCUN-GA AU........ .........G GUN-C|GGNA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNACCUN-- ---------- ---------- ---GACCUNG 1501 ACC--GN-NA UUGACG-CUN AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GA-U----- ---------- 1681 -(-GU-AN)- ---------- ---------- ---------- --------NN -CUCGG-UGU 1741 CG--UA---- --GU-(NAA- ---C)G-CG- UNAA-GCAUC C|G|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---GGGG--- -AA----CCC 1981 -UCC-C--(- GAAR-)-RUG -A-GGRR--- UR-------- --RCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U....... |....(..UG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--CAU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AUG-CA-G A-CU-G-C-- --GG(-GU-U RA)-CRG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU NAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-NA-C GUA--CUACN AUGGC-A-CG -CA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GAUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-U-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGG-(UC -AGC-AU)-N CC........ .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spKRS2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. KRS2. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. KRS2. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Kuhnigk,T., Branke,J., Krekeler,D., Cypionka,H. and Koenig,H . TITLE A feasible role of sulfate-reducing bacteria in the termite gut JOURNAL Syst. Appl. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93148|g1070147 (bases 1 to 752) isolate_name= KRS2 BASE COUNT 193 a 186 c 227 g 145 t 3625 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -NGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCUU---A -UGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CA-A------ ---AAU-(-- --------GA 541 AC-------- -)-UUU---- ---UU----G AG--GAAA-- ---GAUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-U| -GCUAU--C- A--CGU---- 661 ----AAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACU-AC --GUU-GUG( C----UAAUC ---------) AGCA-GC-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC C........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... .....C-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UA -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--AU-CGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.spKRS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sp. str. KRS1. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sp. str. KRS1. ORGANISM Desulfovibrio sp. REFERENCE 1 AUTHORS Kuhnigk,T., Branke,J., Krekeler,D., Cypionka,H. and Koenig,H . TITLE A feasible role of sulfate-reducing bacteria in the termite gut JOURNAL Syst. Appl. Microbiol. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93146|g1070148 isolate_name= KRS1 BASE COUNT 385 a 364 c 485 g 312 t 2830 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UC-|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-AG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCUU---A -UGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CA-A------ ---AAU-(-- --------GA 541 AC-------- -)-UUU---- ---UU----G AG--GAAA-- ---GAUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-U| -GCUAU--C- A--CGU---- 661 ----AAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACU-AC --GUU-GUG( C----UAAUC ---------) AGCA-GC-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-AG- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGCA C-AACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GG-A----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------UC -UUCGG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UCC-A--(- GAAA-)-AGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-UG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--GAU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AUU-CA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-ACAG 2761 G-UG-GGG-A CGCACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CG -CA--CAAAG GGG-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACGUCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.desulf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio desulfuricans. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio desulfuricans. ORGANISM Desulfovibrio desulfuricans. REFERENCE 1 AUTHORS Oyaizu,H. and Woese,C.R. TITLE Phylogenetic relationships among the sulfate respiring bacteria, myxobacteria and purple bacteria JOURNAL Syst. Appl. Microbiol. 6, 257-263 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34113 BASE COUNT 387 a 364 c 488 g 311 t 2826 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UGAACUGG AGAGUN(U-G A)U-UCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCUU---A -UGAU-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CA-A------ ---AAU-(-- --------GA 541 AC-------- -)-UUU---- ---UU----G AG--GAAA-- ---GAUGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-U| -GCUAU--C- A--CGU---- 661 ----AAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UUU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AACU-AC --GUU-GUG( C----UAAUC ---------) AGCA-GC-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-AG- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-UUUG A-UAC-UGCA C-AACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GG-A----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------UC -UUCGG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--GAU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AUU-CA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CG -CA--CAAAG GGG-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.desuE6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio desulfuricans str. Essex 6 (M.E. Adams) DSM 642 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio desulfuricans str. Essex 6 (M.E. Adams) DSM 642 (T). ORGANISM Desulfovibrio desulfuricans. REFERENCE 1 AUTHORS Devereux,R., He,S.-H., Doyle,C.L., Orkland,S., Stahl,D.A., LeGall,J. and Whitman,W.B. TITLE Diversity and origin of Desulfovibrio species: Phylogenetic definition of a family JOURNAL J. Bacteriol. 172, 3609-3619 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 642 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37313 DSM 642 (T) = ATCC 29577 = NCIMB 8307 isolate_name= Essex 6 (M.E. Adams) BASE COUNT 53 a 49 c 60 g 36 t 4178 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ..AGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -A-AGUC-AU NAU-G-GC-C CUNAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CG -CA--CAAAG GGG-A-G-C- GA-GAC-N(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- N)-GACUNCA -UGAAGU-UG -GAAU-CGC- -UNGUN-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUN- AAUGC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.fairfl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio fairfieldensis.. ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio fairfieldensis. ORGANISM Desulfovibrio fairfieldensis. REFERENCE 1 AUTHORS Tee,W., Dyall-Smith,M., Woods,W. and Eisen,D. TITLE Probable new species of Desulfovibrio isolated from a pyogenic liver abscess JOURNAL J. Clin. Microbiol. 34, 1760-1764 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U42221 NB: paper does not name this organism BASE COUNT 374 a 358 c 482 g 291 t 2871 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AUU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCUC---A -UGAC-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CU-G------ ---AAU-(-- --------GA 541 AC-------- -)-UUU---- ---UA----G GG--GAAA-- ---GACGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUGU--C- G--UAU---- 661 ----GAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UGUC-AG-AA 1021 --GG-GAA-- GA-AAGU-GC --GUG-GUG( C----UAAUC ---------) AGCC-GC-GC 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UG- 1261 U-GU-AAG|U CAG---GGGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCC-CUUG A-UAC-UGCA U-GACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -AU-GU-CGG -GG-A----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------UC -UUCGG-UGU 1741 CG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---GGGG--- -AA----CCC 1981 -UCC-C--(- GAAA-)-AGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--CAU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AUG-CA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-A-CC -UA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CG -CA--CAAAG GGG-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAA -CG-C-GUC- CCAGUCCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUU 3001 CG-AGA-(UC -AGC-AU)-G CUC-GGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UU-UU-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CC-GU-CU A-CGGU-AGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN40 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN40.. ACCESSION No information KEYWORDS No information. SOURCE clone UN40. ORGANISM clone UN40. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63616 BASE COUNT 75 a 60 c 100 g 58 t 4083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UA- 1261 C-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCC-UUUA A-UAC-UGCG C-GGCUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-AU--A 1621 AAC-G-AUGG A--UG-CU-- -------G|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN6.. ACCESSION No information KEYWORDS No information. SOURCE clone UN6. ORGANISM clone UN6. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63625 BASE COUNT 76 a 60 c 99 g 58 t 4083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CNUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UA- 1261 C-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCC-UUUA A-UAC-UGCG C-GACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAN- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-AU--A 1621 AAC-G-AUGG A--UG-CU-- -------G|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN93 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN93.. ACCESSION No information KEYWORDS No information. SOURCE clone UN93. ORGANISM clone UN93. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63640 BASE COUNT 75 a 60 c 102 g 58 t 4081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UA- 1261 C-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGCG C-GACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-AU--A 1621 AAC-G-AUGG A--UG-CU-- -------G|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN50 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN50.. ACCESSION No information KEYWORDS No information. SOURCE clone UN50. ORGANISM clone UN50. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63622 BASE COUNT 81 a 67 c 113 g 68 t 4047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UA- 1261 C-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGCG C-GACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-AU--A 1621 AAC-G-AUGG A--UG-CU-- -------G|G -AU-GU-CGG -GG-A----- ---------- 1681 -(-GU-AU)- ---------- ---------- ---------- --------UU -UCCGG-UGU 1741 CG--CA---- --GC-(UAA. ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN59 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN59.. ACCESSION No information KEYWORDS No information. SOURCE clone UN59. ORGANISM clone UN59. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63624 BASE COUNT 75 a 60 c 102 g 58 t 4081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -U|-GU-UA- 1261 C-GU-AAG|U CAG---GGGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAU- 1321 -UGCC-UUUG A-UAC-UGCG C-GACUU-GA AUC-----CG G-GA-GAGGG UGG-C|GGAA 1381 UU-CCAGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA UUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-AU--A 1621 AAC-G-AUGG A--UG-CU-- -------G|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.4 DSR.ACETIVORANS. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.4 DSR.ACETIVORANS. ORGANISM 2.14.4.4 DSR.ACETIVORANS. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsr.acevor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfurella acetivorans. ACCESSION No information KEYWORDS No information. SOURCE Desulfurella acetivorans. ORGANISM Desulfurella acetivorans. REFERENCE 1 AUTHORS Rainey,F.A., Toalster,R. and Stackebrandt,E. TITLE Desulfurella acetivorans, a thermophilic, acetate-oxidizing and sulfur-reducing organism, represents a distinct lineage within the Proteobacteria JOURNAL Syst. Appl. Microbiol. 16, 373-379 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72768|g456330 BASE COUNT 401 a 364 c 477 g 318 t 2816 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- U-A--ACC-U GCCCCA---A -AGUC-U-GG 421 -GAU-AA-CG U--------- ------GC-- C(-GAAA-)G -GUGC-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------U-U UG-U--G-U- ---CUC-(-- --------AC 541 AA-------- -)-GAG---- GU-AU----A AA--GAAA-- ---GGAGGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCUUU--C- G--CUU---- 661 ----UGGG-- AUG---G-|G UCCGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GA-(GAA A)-UCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UGUC-AG-CA 1021 --GG-GAA-- AA-AGAU-UG --CAA-AAG( C----UAAUA -----C---) CUUU-UG-CA 1081 ---------- -------GUU U-GA-UGGU- A-CCU-G-CU A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CUA---AAGU G-AAA-UC-C UU-GGG-C(- UU-A)A-CCC -AG-G-GGC- 1321 -UGCU-UUAG A-UAC-UGCA A-AACUC-GA GUU-----CG G-GA-AAAGC AAG-C|GGAA 1381 UU-CCUGGU- GNA-GGG(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 AAC--GC-AA CUGACG-CUU AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -GC-GU-UGG -GA-AG---- ---------- 1681 -(-UA-CA)- ---------- ---------- ---------- -------CUU -CCCAG-UGC 1741 CG--UAA--- --GC-(UAA- ---C)G-CG- UUAA-ACAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AA CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGGUA-C A)--CGGAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- -------C-U ---AGUA--- GUA----GGA 1981 -GCC-C--(- GAAA-)-GGG -U-AACGA-- UU-------C UUGCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGCAAG---- ----AA---| AGC-UA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-GC--AUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAU-GC-G A-CC-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -UA--CAAUG GGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCU--AAAG -CA-U-CCC- ACAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 AC-CGG-(UC -AGCUAU)-A CGG-UGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-CU-ACUG -UAA-G-ACG 3121 G-UAG-G-CU -AA-CCC--- ---------- ---------- -----(---- GUUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GC-NC A-UGGU-AGG GUC-AG-CG- ACC-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.5 MYXOBACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.5 MYXOBACTERIA. ORGANISM 2.14.4.5 MYXOBACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC114 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68473 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 121 a 119 c 163 g 81 t 3892 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UAGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGGUAC---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CCCC---A -GGUG-G-UG 421 -GAU-AA-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--C UAAUACA-GC 481 AU-GAG---- ---------- -------A-C CA-C--G-AU ---CUC-(-- --------GA 541 AA-------- -)-GGG---A AU-GG----G GU--CAAA-- ---GCCGGC- CUC-UU---- 601 --(------- ---CAUG--- ---)------ -----AA-A| -GCUGG--C- G--CCA---- 661 ----GGGG-- AUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUC-GG-CG 1021 --GG-GAC-- G--------- ---------( ------AUGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pol.cellul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Polyangium cellulosum subsp. ferrugineum str. SMP 456 ATCC 25531. ACCESSION No information KEYWORDS No information. SOURCE Polyangium cellulosum subsp. ferrugineum str. SMP 456 ATCC 25531. ORGANISM Polyangium cellulosum. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25531 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94282 isolate_name= SMP 456 NB: former name Sorangium cellulosum BASE COUNT 373 a 363 c 491 g 291 t 2858 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UAGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CCCC---A -GGUG-G-UG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAGC-G--C UAAUACA-GC 481 AU-GAG---- ---------- -------A-C CA-C--G-UC ---UUC-(-- --------GA 541 AA-------- -)-GAG---G AU-GA----G GU--CAAA-- ---GCCGGC- CUC-UU---- 601 --(------- ---CACG--- ---)------ -----AA-A| -GCUGG--C- G--CCA---- 661 ----GGGG-- AUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUG-GA-GG 1021 --GG-GAC-- GA-AUAA-GG --GUU-GG-( C----UAACA -----U---) -CCA-GC-UC 1081 ---------- -------G-A U-GA-CGGU- A-CCC-C-UU U-AG--CAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GNAGC CGCGGUA-A) G-A-C-AGAG |-GGUG-C-- 1201 AAA-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GU-UC- 1261 G-UA-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUUG A-AAC-UCAC G-AACUU-GA GUC-----CC G-GA-GAGGA AGG-C|GGAA 1381 UU-CUCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GAGAGG- AACA-UCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-GA CUGACG-CUG AG-A------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-CGC -GG-GC---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------UCC -UGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(ANNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UAG AAA-AU|--- ---------G ---CAGG--- -NA----CCU 1981 -GGU-U--(- GAAA-)-GAU -C-GGGG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| CCU-GU-AGU |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---YGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --AU(-AUUU AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAC GGU-C-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- AA-GCCAA-U CCGAA-AAAA -CC-G-UCC- UCAGUACGGA 2941 U-AAGAGUC- (UGCAAC-U- C)-GACUCUU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-UGA-(UC -AGC-AG)-G CAG-GGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UGG 3121 C-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-CC-CC A-AGGA-GUG GUU-GG-UA- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pol.spPl49 4376 bp RNA RNA 02-JUL-1998 DEFINITION Polyangium sp. str. Pl 4943. ACCESSION No information KEYWORDS No information. SOURCE Polyangium sp. str. Pl 4943. ORGANISM Polyangium sp. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94280 isolate_name= Pl 4943 NB: C (not U) at 957 is real! BASE COUNT 364 a 358 c 486 g 276 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UAGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GUGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-NG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CCUC---U -GGUG-G-UG 421 -GAU-AA-CC U--------- ------UC-- C(-GAAA-)G -GAGG-G--C UAAUACA-GC 481 AU-AAG---- ---------- -------A-C CA-C--G-GC ---CUC-(-- --------GC 541 AA-------- -)-GAG---G GA-GG----G GU--AAAA-- ---GCGGGC- CUC-UG---- 601 --(------- ---CAUG--- ---)------ -----CA-A| -GCUCG--C- A--CCA---- 661 ----GGGN-- NUG---G-|G CCUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUG-GA-GG 1021 --GG-GAC-- GA-AUAA-GU --GUC-GU-( C----GAAUA -----G---) -ACG-GC-AU 1081 ---------- -------G-A U-GA-CGGU- A-CCC-N-UU U-AG--CAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGUG-C-- 1201 AAA-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -U|-GC-UC- 1261 G-GA-AAG|U CGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -AG-G-AAG- 1321 -AGCA-UUCG A-AAC-UUCC G-AGCUC-GA GUU-----UC G-GA-GAGGC AGG-C|GGAA 1381 UU-CUCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GAGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACG--AU-GA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-CGC -GG-GC---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CCN -UGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ANNGG-G -N-C-NN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(NNNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UAG AAA-AU|--- ---------G ---CAGG--- -AA----CCU 1981 -GGU-U--(- GAAA-)-GAU -C-GGGG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| CCU-GU-AGU |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NA-CU-C- U-AAC-GA-G A-CU-G-CCG --AU(-AUUC AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC GGU-C-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GU-GCUAA-U CCGAA-AAAA -CC-G-GCC- UCAGUACGGA 2941 U-AAGAGUC- (UGCAAC-U- C)-GACUCUU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-UGA-(UC -AGC-AG)-G CAG-GGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- UU-GC-UCCA -GAA-G-UGG 3121 C-UGA-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-CC-CC A-AGGA-GUG GCU-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Con.apicul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chondromyces apiculatus str. Cm a2. ACCESSION No information KEYWORDS No information. SOURCE Chondromyces apiculatus str. Cm a2. ORGANISM Chondromyces apiculatus. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94274 isolate_name= Cm a2 BASE COUNT 364 a 354 c 484 g 272 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UAGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CUUC---C -GGUG-G-UG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACA-GC 481 AU-AAG---- ---------- -------A-C CA-C--G-CU ---UUC-(-- --------GA 541 GA-------- -)-GAG---A GA-GA----G GU--CAAA-- ---GCGGGC- CAA-UG---- 601 --(------- ---AAAU--- ---)------ -----CA-A| -GCUCG--C- G--CCG---- 661 ----GNNG-- AUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GN-NU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUG-GA-GA 1021 --GG-GAC-- GA-AUAA-GU --GCU-GG-( C----UAAUA -----C---) -CCA-GU-GC 1081 ---------- -------G-A U-GA-CGGU- A-CCU-C-UU U-AG--CAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGUG-C-- 1201 AAA-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UC- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAG- 1321 -UGCA-CUCG A-AAC-UGCA G-AGCUU-GA GUC-----CC G-GA-GAGGA AGG-C|GGAA 1381 UU-CUCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GAGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACG--GN-GA CUGACG-CUG AG-A------ -------CG- C-NNNA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGC -GG-GC---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CCN -UGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(ANNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UAG AAA-AC|--- ---------G ---CAGG--- -AA----CCU 1981 -GGU-C--(- GAAA-)-GGU -C-GGGG--- NG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| CCU-GC-NGU |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NA-CU-C- U-AGC-GA-G A-CU-G-CCG --AU(-AUUG AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC GGU-U-G-C- GA-ACU-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCGAA-AAAA -CC-G-ACC- UCAGUACGGA 2941 U-AAGAGUC- (UGCAAC-U- C)-GACUCUU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGN-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- NNN-NNA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-U-G 3121 C-UGC-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A N-GC-CC-CC A-AGGA-GUG GUC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Con.crocat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Chondromyces crocatus str. Cm c6. ACCESSION No information KEYWORDS No information. SOURCE Chondromyces crocatus str. Cm c6. ORGANISM Chondromyces crocatus. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94275 isolate_name= Cm c6 BASE COUNT 362 a 354 c 486 g 275 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GU-- UAGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGGUAA---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-A C-CUCC---C -AGUG-G-UG 421 -GAU-AA-CG U--------- ------UC-- C(-GAAA-)G -GAAC-G--C UAAUACA-GC 481 AU-AAG---- ---------- -------A-C CA-C--G-GC ---UYC-(-- --------GC 541 GA-------- -)-GGA---G CA-GA----G GU--CAAA-- ---GCGGGC- CAC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUCG--C- G--CUG---- 661 ----GGNN-- NUG---A-|G CCUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUG-GA-GG 1021 --GG-GAC-- GA-AUAA-GU --UUC-NG-( U----UAAUA -----A---) -CCG-GA-GC 1081 ---------- -------G-A U-GA-CGGU- A-CCN-N-UU U-AG--CAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AGAG |-GGUG-C-- 1201 AAA-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UG- 1261 C-GC-AAG|U CGG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUCG A-AAC-UGCG C-GGCUU-GA GUC-----CC G-GA-GAGGA AGG-C|GGAA 1381 UU-CUCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GAGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACG--GN-GA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GC-UGC -GG-GC---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CCN -UGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(NNNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UAG AAA-AC|--- ---------G ---UAAG--- -AA----CCU 1981 -GGU-C--(- GAAA-)-GGU -C-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CUU-GC-GGY |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NA-CU-C- U-AGC-GA-G A-CU-G-CCG --AU(-AUUA AA)-AUC-G- -GAGG-A-AG 2761 G-UA-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC GGU-U-G-C- UA-AAU-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCGAA-AAAA -CC-G-ACC- UCAGUACGGA 2941 U-AAGAGUC- (UGCAAC-U- C)-GACUCUU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GNN-NNA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UGG 3121 C-UGA-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-CC-CC A-AGGA-GUG GUC-GG-UA- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB46 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15117|g710323 library_source= Pele's Vents Bacterium DNA BASE COUNT 198 a 211 c 249 g 139 t 3579 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .....CCAG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACA--CC-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GC-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC CGG-GC-UAG AAA-AA|--- ---------C ---AAGG--- -AA----UCC 1981 -CGC-A--(- GAAA-)-CGU -G-GGAG--- UG-------- --CUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAG------- ----AA---| CCU-UG-GUC |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUAC-C AU-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG CGC-A-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CGCAA-AAAG -CC-G-GCC- UCAGUACGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-UGA-(UC -AGC-AG)-G CAA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- GU-GC-UCCA -GAA-G-UGG 3121 C-CAU-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A A-GC-CC-CC A-AGGA-GUG CUU-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE4 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26257|g498391 library_source= unidentified soil bacterium from soybean field BASE COUNT 70 a 71 c 77 g 59 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--GUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GU-C AA)-GC--G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAU CGU-U-G-C- AA-GCU-A(G 2881 -CAA)UAGU- ---------- AA-GCCAA-U CGCA--AAAA -GC-C-GUCC UCAGUACAGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGA-(UC -AGC-AG)-G CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD12 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26199|g498399 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 75 c 81 g 56 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--GUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ---U(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGU-C-G-C- UA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CGCAA-AAAA -CC-G-GCC- UCAGUUCAGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-UGA-(UC -AGC-AG)-G CAG-GGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nan.exeden 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nannocystis exedens str. Na e1 ATCC 25963. ACCESSION No information KEYWORDS No information. SOURCE Nannocystis exedens str. Na e1 ATCC 25963. ORGANISM Nannocystis exedens. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE classification Phylogenetic analysis of the myxobacteria: basis for their JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25963 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94279 isolate_name= Na e1 BASE COUNT 361 a 370 c 476 g 275 t 2894 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGC -GAAC-GU-- UUGC-GGC-G -GGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UA (--GC----- ---------- ---------- 241 --------AA -)UA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUAGG- UAA--UCA-A C-CCCU---C -GGUU-C-GG 421 -GAU-AA-CG U--------- ------UC-- U(-GAAA-)G -GAGC-G--C UAAUACC-GN 481 AC-GUG---- ---------- -------U-C UU-C--G-GG ---AGC-(-- --------UU 541 CG-------- -)-GCU---C CU-GU----C GA--GAAA-- ---GACCC-- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --GGGU--U- G--CCG---- 661 ----AGGN-- NCG---A-|G CNUGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCCA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUG-GG-GA 1021 --GA-GAC-- GA-AGAA-AG --CCU-GU-( -----GAAGA ---------) -GCA-GG-NN 1081 ---------- -------C-U U-GA-CGGU- A-UCU-C-CU U-AG--CAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAA-CGUUGC UC-GGAAUCA -UU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-GG- 1261 C-GU-AAG|C GGG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAG- 1321 -UGCA-UCCC G-AAC-UGCG U-CGCUU-GA AUC-----UC G-GA-GGGGG ACA-G|AGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -UGUCCUG-- ---------- ---------- ---------G 1501 ACG--AA-GA UUGACG-CUG AG-G------ -------UG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -AC-GG-UGG -AG-GA---- ---------- 1681 -(UUU-GA)C ---------- ---------- ---------- -------CCC -UUCGC-UGU 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GU-U-A AAU-C-|C-- ---------A ---CUGG--- -AA----CCU 1981 -GGC-U--(- GAAA-)-GGC -U-GGGN--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-GU-GAG |---A|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCC- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-C--U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGC-C-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GA-GCAAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GG-AGA-(UC -AGC-AC)-G CUC-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CU-GC-UCCA -GAA-G-UAG 3121 G-AAC-C-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAA-G-G C-CC-UA-CC A-AGGA-GCN GUC-GG-UG- ACU-UGG... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD15 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26202|g498402 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 73 c 79 g 58 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-C-G-C- CA-AGU-C(G 2881 -CGA)GACG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sma.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stigmatella aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Stigmatella aurantiaca. ORGANISM Stigmatella aurantiaca. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE classification Phylogenetic analysis of the myxobacteria: basis for their JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94281 BASE COUNT 368 a 368 c 460 g 273 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GA (--GC----- ---------- ---------- 241 --------AA -)UC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- UAA--UCU-G C-CUAG---A -AGCU-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-AA 481 AU-AAG---- ---------- -------C-C CA-C--A-GG ---GAC-(-- --------UU 541 CG-------- -)-GUC---C UC-GA----G GG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CUU---- 661 ----CUAG-- AUG---A-|G CCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AAAC-CC --CCA-AC-( C----UAACA -----C---) -GCU-GG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCG A-AAC-UGCA G-AGCUU-GA GUG-----CC G-GA-GAGGG UAG-C|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACG--GU-GA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -CGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-G.... .......... .........G 1861 C-A--CA-AG .......... .......... .......... .(.....N-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UUC-A--(- GAGA-)-UGA -G-GGAG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-U ---CC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|A 2701 G-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG CGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAU-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAA- UU-GC-UCCA -GAA-G-UCG 3121 C-UGU-G-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGAGGC-A G-GC-GC-CC A-AGGA-GUG GUU-GG-UA- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ang.discif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Angiococcus disciformis. ACCESSION No information KEYWORDS No information. SOURCE Angiococcus disciformis. ORGANISM Angiococcus disciformis. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94374 NB: former name Cystobacter disciformis BASE COUNT 333 a 351 c 448 g 259 t 2985 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGN-GGN-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GA (--GC----- ---------- ---------- 241 --------NA -)UC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGG---G -UGUC-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CC-C--G-GG ---AGC-(-- --------UU 541 CG-------- -)-GCU---C CU-GA----G GG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CAU---- 661 ----CCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-RG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AAAC-CC --UUA-GC-( C----CAACA -----C---) -GCU-GA-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCG A-AAC-UGCA G-AGCNU-GA GUG-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCNNA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GU---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCN -CGCGG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....N-C G)--CNCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----AGC 1981 -CUC-A--(- GAGA-)-UGA -G-GNAG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GGG------- ----AG---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---AC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GU|G 2701 G-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG CGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAU-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AN)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-GU-GC-CC A-AGGA-GUG GUC-GG-UN- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arc.gephyr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Archangium gephyra. ACCESSION No information KEYWORDS No information. SOURCE Archangium gephyra. ORGANISM Archangium gephyra. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94273 BASE COUNT 340 a 346 c 446 g 263 t 2981 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GA (--GC----- ---------- ---------- 241 --------AA -)UC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGG---G -NGUC-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CC-C--G-GG ---AGC-(-- --------UU 541 CG-------- -)-GCU---C UU-GA----G GG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CAU---- 661 ----CCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCN-GN-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AAAC-CC --UGA-RG-( C----UAACA -----U---) -CYU-CA-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCN A-AAC-UGCA G-AGCUU-GA GUG-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GU---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCN -CGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....N-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UUGG--- -AA----UCC 1981 -CUC-A--(- GAGA-)-UGA -G-GNNG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCA-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---RC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GY|G 2701 N-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG CGU-C-G-C- NA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAU-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-GU-GC-CC A-AGGA-GUG GUC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cys.fuscus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cystobacter fuscus. ACCESSION No information KEYWORDS No information. SOURCE Cystobacter fuscus. ORGANISM Cystobacter fuscus. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94276 BASE COUNT 358 a 355 c 465 g 277 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GA (--GC----- ---------- ---------- 241 --------AA -)UC-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGG---G -UGUC-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CC-C--G-GG ---AGC-(-- --------UU 541 CG-------- -)-GCU---C UU-GA----G GG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CAU---- 661 ----CCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AAAC-CC --CUG-GG-( C----UAAUA -----C---) -UCC-AG-GG 1081 ---------- -------N-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAG- 1321 -UGCG-UUCG A-AAC-UGCA G-AGCUU-GA GUA-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GN-CA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GU---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCN -CGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UGY 1981 -CUC-A--(- GAGA-)-URR -N-NNNG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---GC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GC|G 2701 N-NU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGU-U-G-C- NA-ACU-N(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CGCAU-AAAA -CC-G-GNC- UCAGNUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-GU-GC-CC A-AGGA-GUG GUC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myx.xanthu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myxococcus xanthus str. DK1622. ACCESSION No information KEYWORDS No information. SOURCE Myxococcus xanthus str. DK1622. ORGANISM Myxococcus xanthus. REFERENCE 1 AUTHORS Oyaizu,H. and Woese,C.R. TITLE Phylogenetic relationships among the sulfate respiring bacteria, myxobacteria and purple bacteria JOURNAL Syst. Appl. Microbiol. 6, 257-263 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34114 isolate_name= DK1622 BASE COUNT 384 a 372 c 488 g 295 t 2837 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~CAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGA---G -UGCU-C-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GU ---UUC-(-- --------UU 541 CG-------- -)-GAG---A CU-GA----G GG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CAU---- 661 ----UCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAA-- GA-AAAC-CC --GUU-GG-( C----UAACA -----U---) -CCA-AC-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-GU- 1261 G-AC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCG A-AAC-UGUU G-UGCUU-GA GUG-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -CGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----UCC 1981 -UUC-A--(- GAGA-)-UGA -G-GGAG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CUG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---AC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GU|G 2701 G-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG CGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAU-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-A-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-GU-GC-UC A-AGGA-GUG GUC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mel.lichen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Melittangium lichenicola. ACCESSION No information KEYWORDS No information. SOURCE Melittangium lichenicola. ORGANISM Melittangium lichenicola. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE Phylogenetic analysis of the myxobacteria: basis for their classification. JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94277 BASE COUNT 345 a 348 c 448 g 264 t 2971 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGG---A -UGCC-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -AUUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GY ---CUC-(-- --------UU 541 CG-------- -)-GAG---A CU-GA----G GG--NAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAU--C- A--CAA---- 661 ----CCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AACC-GU --AAA-GC-( C----UAAUA -----C---) -GCU-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCN A-AAC-UGCA G-AGCNU-GA GUG-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCCNNA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -CGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....N-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UUC-A--(- GAGA-)-UGA -G-GGAG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGG------- ----AA---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---AC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GU|G 2701 G-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG CGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAG-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-AU-GC-CC A-AGGA-GUG CUC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myx.corall 4376 bp RNA RNA 02-JUL-1998 DEFINITION Myxococcus coralloides str. M2 ATCC 25202 (T). ACCESSION No information KEYWORDS No information. SOURCE Myxococcus coralloides str. M2 ATCC 25202 (T). ORGANISM Myxococcus coralloides. REFERENCE 1 AUTHORS Shimkets,L. and Woese,C.R. TITLE A phylogenetic analysis of the Myxobacteria: Basis for their reclassification JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89, 9459-9463 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25202 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94278 Former RDP Sids: Clc.corall ATCC 25202 (T) = DSM 2259 isolate_name= M2 NB: former name Myxococcus -> Corallococcus -> Myxococcus coralloides BASE COUNT 345 a 348 c 446 g 264 t 2973 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 N--------- -----CGAAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-GG (--GC----- ---------- ---------- 241 --------AA -)CC-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGCG-GCGC- 361 -A-CG-GG-U GCGU---AAC -NC-GUGGA- UAA--UCU-G C-CUGG---A -UGCC-U-GG 421 -GAU-AA-CC A--------- ------GU-- C(-GAAA-)G -ACUG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GU ---UUC-(-- --------UU 541 CG-------- -)-GAG---A CU-GA----G GG--NAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---UAUA--- ---)------ -----CA-A| -GCUAY--C- A--CAA---- 661 ----CCAG-- AUG---A-|G UCCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--GCAC| UUUC-GA-CC 1021 --GG-GAC-- GA-AACC-GU --AAA-GC-( C----UAAUA -----C---) -GCU-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCU-NUG( CCA--GCAGC CGCGGUA-A) U-A-C-AGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CGG---GUGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAG- 1321 -UGCG-CCCN A-AAC-UGCA G-AGCUU-GA GUG-----CC G-GA-GAGGG UGG-C|GGAA 1381 UU-CCNNAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-CGU -GG-GA---- ---------- 1681 -(GUU-GA)C ---------- ---------- ---------- -------CCC -CGCGG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....N-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---UCGG--- -AA----UCC 1981 -UUC-A--(- GAGA-)-UGA -G-GGAG--- UG-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GGG------- ----AA---| CCG-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUU- 2281 AG--UUGC-C ---AC----- ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GU|G 2701 G-AU-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG CGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGCAG-AAAA -CC-G-GUC- UCAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UU-GC-UCCA -GAA-G-UCA 3121 U-CUC----- ---------- ---------- ---------- -----(---- ACCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-A G-AU-GC-CC A-AGGA-GUG CUC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.6 DESULFUROMONAS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.6 DESULFUROMONAS_GROUP. ORGANISM 2.14.4.6 DESULFUROMONAS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.6.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.6.1 DSM.PALMITATIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.6.1 DSM.PALMITATIS_SUBGROUP. ORGANISM 2.14.4.6.1 DSM.PALMITATIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsm.palmit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromonas palmitatis str. SDBY1 ATCC 51701. ACCESSION No information KEYWORDS No information. SOURCE Desulfuromonas palmitatis str. SDBY1 ATCC 51701. ORGANISM Desulfuromonas palmitatis. REFERENCE 1 AUTHORS Coates,J.D., Lonergan,D.J., Phillips,E.J.P., Jenter,H. and Lovley,D.R. TITLE Desulfuromonas palmitatis sp. nov., a Marine Dissimilatory Fe(III) Reducer That Can Oxidize Long Chain Fatty Acids JOURNAL Arch. Microbiol. 164, 406-413 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51701 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28172|g886802 isolate_name= SDBY1 BASE COUNT 349 a 342 c 472 g 301 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCGG---U -GAUC-U-GG 421 -GAU-AA-CA U--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GG ---CUC-(-- --------UU 541 CG-------- -)-GAG---C UU-GC----G GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--U- G--UCA---- 661 ----UUGG-- AUG---A-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-SNMA CSCC-GC-RU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACC-CC --UGU-AGG( U----UAAUA -----U---) CCUG-CA-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCASC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 G-CU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGC C-GGCUU-GA GUA-----CG G-GA-GAGGA UAG-U|GGAA 1381 UU-CCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----UUU 1981 -CCU-G--(- GAGA-)-CAG -G-AGAG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- AA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-UU A-UGGU-AUG GUC-GG-UA- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsm.acetex 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromonas acetexigens. ACCESSION No information KEYWORDS No information. SOURCE Desulfuromonas acetexigens. ORGANISM Desulfuromonas acetexigens. REFERENCE 1 AUTHORS Lovley,D.R., Phillips,E.J.P., Lonergan,D.J. and Widman,P.K. TITLE Fe(III) and S0 Reduction by Pelobacter carbinolicus JOURNAL Appl. Environ. Microbiol. 61, 2132-2138 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23140|g727425 BASE COUNT 319 a 307 c 427 g 265 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........G -)GU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCGA---U -GAUC-C-GG 421 -GAU-AA-CC U--------- ------UU-- C(-GAAA-)G -GGGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-U CA-C--G-AA ---CUC-(-- --------CU 541 CG-------- -)-GAG---U UU-GC----G GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--C- G--UCA---- 661 ----UUGG-- AUG---A-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACU-CC --CGG-GUG( U----UAAUA -----U---) CGCC-UG-GG 1081 ---------- -------C-C U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-UG- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGC U-AACUU-GA GUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-UCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GCA----CUU 1981 -UCU-G--(- GAAA-)-CAG -A-GAGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.aceten 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter acetylenicus str. WoAcyl DSM 2348. ACCESSION No information KEYWORDS No information. SOURCE Pelobacter acetylenicus str. WoAcyl DSM 2348. ORGANISM Pelobacter acetylenicus. REFERENCE 1 AUTHORS Evers,S., Weizenegger,M., Ludwig,W., Schink,B. and Schleifer ,K.H. TITLE The phylogenetic positions of Pelobacter acetylenicus and Pelobacter propionicus JOURNAL Syst. Appl. Microbiol. 16, 216-218 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2348 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70955 isolate_name= WoAcyl BASE COUNT 369 a 369 c 503 g 306 t 2829 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCGA---U -GGAC-C-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--A-GG ---CUC-(-- --------CC 541 UG-------- -)-GAG---C UU-GC----G GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--U- G--UCA---- 661 ----UCGG-- AUG---A-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACC-CC --UGC-AGG( A----UAACA -----C---) CCUG-CA-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA GUA-----CG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCGGAU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----CUU 1981 -GCU-G--(- GAAA-)-CAG -U-GAGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-C CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-UU A-UGGU-AUG GUC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.veneti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter venetianus. ACCESSION No information KEYWORDS No information. SOURCE Pelobacter venetianus. ORGANISM Pelobacter venetianus. REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41562|g1136553 BASE COUNT 327 a 320 c 443 g 280 t 3006 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CCGA---U -GGAC-C-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -GGGU-G--Y UAWUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--A-GG ---CUC-(-- --------UU 541 UG-------- -)-GAG---U UU-GC----G GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--U- G--UCA---- 661 ----UUGG-- AUG---A-|G UCCKC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACA-CC --CAG-GGG( U----UAAUA -----U---) UCUC-UG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( YCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA GUA-----CG G-GA-GAGGG AAG-U|GGAA 1381 UU-UCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----CUU 1981 -UCU-G--(- GAAA-)-CAG -U-UAGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-C CCCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.carbi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter carbinolicus str. GraBd1 DSM 2380. ACCESSION No information KEYWORDS No information. SOURCE Pelobacter carbinolicus str. GraBd1 DSM 2380. ORGANISM Pelobacter carbinolicus. REFERENCE 1 AUTHORS Lovley,D.R., Phillips,E.J.P., Lonergan,D.J. and Widman,P.K. TITLE Fe(III) and S0 Reduction by Pelobacter carbinolicus JOURNAL Appl. Environ. Microbiol. 61, 2132-2138 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 2380 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U23141|g727426 isolate_name= GraBd1 BASE COUNT 336 a 337 c 455 g 281 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-G C-CCGA---U -GACC-U-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--A-GG ---CUC-(-- --------UU 541 NG-------- -)-GAG---C AU-GC----G GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--C- G--UCA---- 661 ----UCGG-- AUG---A-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CNCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACU-AU --CGU-GGU( C----GAAUA -----G---) GCCC-CG-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA GUA-----CG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----CUU 1981 -UCU-G--(- GAAA-)-CAG -U-UAGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUU- ---------- UA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A N-CC-GC-UU A-UGGU-AU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.carbin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter carbinolicus str. GraBd1 DSM 2380. ACCESSION No information KEYWORDS No information. SOURCE Pelobacter carbinolicus str. GraBd1 DSM 2380. ORGANISM Pelobacter carbinolicus. REFERENCE 1 AUTHORS Liesack,W. and Finster,K. TITLE Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 753-758 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 2380 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79413|g602078 isolate_name= GraBd1 BASE COUNT 351 a 351 c 477 g 295 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-AA-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- NAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-G C-CCGA---U -GACC-U-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--A-GG ---CUC-(-- --------UU 541 CG-------- -)-GAG---C AU-GC----- GG--AAAA-- ---GGUGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUAC--C- G--UCA---- 661 ----UCGG-- AUGAGUA-|G UCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GUG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AACU-AU --CGU-GGU( C----GAAUA -----G---) GCCC-CG-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA GUA-----CG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----CUU 1981 -UCU-G--(- GAAA-)-CAG -U-UAGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUU- ---------- UA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-UU A-UGGU-AUG GUC-GG-UA- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.acidgl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter acidigallici str. MaGa12 DSM 2377 (T). ACCESSION No information KEYWORDS No information. SOURCE Pelobacter acidigallici str. MaGa12 DSM 2377 (T). ORGANISM Pelobacter acidigallici. REFERENCE 1 AUTHORS Liesack,W., Bak,F., Kreft,J.U. and Stackebrandt,E. TITLE Holophaga foetida gen. nov., sp. nov., a new, homoacetogenic bacterium degrading methoxylated aromatic compounds JOURNAL Arch. Microbiol. 162, 85-90 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 2377 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77216|g534963 isolate_name= MaGa12 BASE COUNT 376 a 340 c 464 g 314 t 2882 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CCUA---U -GAUC-U-GG 421 -GAU-AA-CA U--------- ------UU-- C(-GAAA-)G -GGAU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GG ---AUC-(-- --------UU 541 CG-------- -)-GAU---U UU-GC----G GG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--UCA---- 661 ----UAGG-- AUG---G-|G UCCGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--CUUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AAUA-CU --C------( ------GCAA ---------) ------G-AG 1081 ---------- -------AGC U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GA-CU- 1261 G-UU-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GUCUU-GA GUA-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AAC-CA)C ---------- ---------- ---------- -------UCC -UGCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CAAU-C- GUA----CAU 1981 -UAU-G--(- GAAA-)-CAU -A-GUGG--- UC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CU-------- ----GG---| AUU-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AA-G A-CU-C-CCG --UU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- UU-GU-ACCG -GAA-A-CCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-A G-CC-GU-UU A-UGGU-AUG AUC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsu.kysngi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromusa kysingii str. Kysw2 DSM 7343 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfuromusa kysingii str. Kysw2 DSM 7343 (T). ORGANISM Desulfuromusa kysingii. REFERENCE 1 AUTHORS Liesack,W. and Finster,K. TITLE Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 753-758 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 7343 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79414|g601946 geog_source= Kysing Fjord south of Arhus, Denmark biol_source= anoxic mud isolate_name= Kysw2 BASE COUNT 360 a 330 c 454 g 294 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-G C-CCUA---A -GGUC-A-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-U CA-C--G-CC ---CUC-(-- --------CU 541 CG-------- -)-GAG---G AG-GU----G AG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GG|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--CUUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AAUA-CU --C------( ------GCAA ---------) ------G-AG 1081 ---------- -------UGC U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GC-UU- 1261 G-UU-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GGCUU-GA GUA-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AAC-CA)C ---------- ---------- ---------- -------UCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GUA----CUC 1981 -UAU-G--(- GAAA-)-AAU -A-GAGG--- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CUA- UU-GU-ACCG -GAA-A-CCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-A G-CC-GU-UU A-UGGU-AUG AUC-GG-UA- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsu.succin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromusa succinoxidans str. Gylac DSM 8270 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfuromusa succinoxidans str. Gylac DSM 8270 (T). ORGANISM Desulfuromusa succinoxidans. REFERENCE 1 AUTHORS Liesack,W. and Finster,K. TITLE Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov., and Desulfuromusa succinoxidans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 753-758 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8270 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79415|g601949 geog_source= ~2000 m depth, Guayamas Basin (Gulf of California) biol_source= anoxic mud sample isolate_name= Gylac BASE COUNT 361 a 332 c 449 g 292 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- NAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-G C-CCUA---G -AGUC-U-GG 421 -GAU-AA-CA C--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-C CA-C--G-CC ---UUC-(-- --------CU 541 CG-------- -)-GAA---G AA-GU----G GG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUC---- 661 ----UAGG-- AUG---G-|G UCCGC----- -GG|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--CUUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AAUA-CU --C------( ------GCAA ---------) ------G-AG 1081 ---------- -------UGC U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC --GACUU-GA GUA-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AAC-CA)C ---------- ---------- ---------- -------UCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GCA----CUC 1981 -UAU-G--(- GAAA-)-AAU -A-GAGG--- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CUA- UU-GU-ACCG -GAA-A-CCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-A G-CC-GU-UU A-UGGU-AUG AUC-GG-UA- ACU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsu.bakii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromusa bakii str. Gyprop DSM 7345 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfuromusa bakii str. Gyprop DSM 7345 (T). ORGANISM Desulfuromusa bakii. REFERENCE 1 AUTHORS Liesack,W. and Finster,K. TITLE Phylogenetic analysis of five strains of Gram-negative, obligately anaerobic, sulfur-reducing bacteria and description of Desulfuromusa gen. nov., including Desulfuromusa kysingii sp. nov., Desulfuromusa bakii sp. nov ., and Desulfuromusa succinoxidans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 753-758 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 7345 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79412|g601945 geog_source= Kysing Fjord south of Arhus, Denmark biol_source= anoxic mud isolate_name= Gyprop BASE COUNT 370 a 336 c 460 g 307 t 2903 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGU-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-G C-CCUA---A -GGUC-U-GG 421 -GAU-AA-CA C--------- ------UU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-U CA-C--G-CC ---CUC-(-- --------CU 541 CG-------- -)-GAG---G AA-GU----G AG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GG|----UC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UG- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-AG-G-A U-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--CUUC| UGUC-AG-AG 1021 --GG-GAA-- GA-AAUA-CU --C------( ------GCAA ---------) ------G-AG 1081 ---------- -------UGC U-GA-CGGU- A-CCC-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GG-CU- 1261 A-UU-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGU A-GUCUU-GA GUA-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AAC-CA)C ---------- ---------- ---------- -------UCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CGAU-C- GCA----CUU 1981 -UAU-A--(- GAAA-)-UAU -A-GAGG--- UC-------- ---AG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG G-)------- CU-------- ----GG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AU)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CUA- UU-GU-ACCG -GAA-A-CCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-CC-GU-UU A-UGGU-AUG AUC-GG-UA- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.6.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.6.2 DSM.ACETOXIDANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.6.2 DSM.ACETOXIDANS_SUBGROUP. ORGANISM 2.14.4.6.2 DSM.ACETOXIDANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsm.acetox 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromonas acetoxidans str. 11070 DSM 684. ACCESSION No information KEYWORDS No information. SOURCE Desulfuromonas acetoxidans str. 11070 DSM 684. ORGANISM Desulfuromonas acetoxidans. REFERENCE 1 AUTHORS DeWeerd,K.A., Mandelco,L., Tanner,R.S., Woese,C.R. and Suflita,J.M. TITLE Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium JOURNAL Arch. Microbiol. 154, 23-30 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 684 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26634 isolate_name= 11070 BASE COUNT 380 a 329 c 463 g 315 t 2889 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU--C (--UU----- ---------- ---------- 241 --------CG -)GG-AAAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-G C-CUGA---U -AAUC-U-GG 421 -GAU-AA-CA U--------- ------UU-- C(-GAAA-)G -AAGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--A-GU ---AUC-(-- --------UU 541 CG-------- -)-GGU---A CA-GC----G GG--AAAA-- ---GAUGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUAU--U- G--UUA---- 661 ----UCAG-- AUG---A-|G UCCGC----- -GG|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-AA-GA 1021 --GG-GAA-- GA-AACC-UU --UGU-UGG( C----UAAUA -----C---) CCAA-CA-GA 1081 ---------- -------A-U U-GA-CGGU- A-CCU-C-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-NGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-NAG- 1321 -UGCA-UUGG A-AAC-UGGC A-AACUU-GA GUA-----CG G-GA-GAGGA AAG-U|GGAA 1381 UU-UCGAGU- GUA-GGG(-G UGAAA)-UCC -GU-AGAU-A UU-CGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- N-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUACN N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CNAU-C- GUA----CCU 1981 -UAU-G--(- GAAA-)-CAU -U-UGGG--- NC-------- ---AG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- CU-------- ----NG---| AUC-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-NN-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-A-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGA- UU-GU-ACCU -GAA-A-UCG 3121 G-UGG-G-CU -AA-CCU--- ---------- ---------- -----(---- -UUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GC-UU A-UGGU-AUG ANN-GG.... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.6.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.6.3 ENVIRONMENTAL_CLONE_PAD48. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.6.3 ENVIRONMENTAL_CLONE_PAD48. ORGANISM 2.14.4.6.3 ENVIRONMENTAL_CLONE_PAD48. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD48 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26235|g498438 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 67 c 79 g 64 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-A-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.6.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.6.4 GBC.METALLIREDUCENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.6.4 GBC.METALLIREDUCENS_SUBGROUP. ORGANISM 2.14.4.6.4 GBC.METALLIREDUCENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gbc.hygenl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geobacter "hydrogenophilus".. ACCESSION No information KEYWORDS No information. SOURCE Geobacter "hydrogenophilus". ORGANISM Geobacter "hydrogenophilus". REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information REFERENCE 2 AUTHORS Coates,J.D., Phillips,E.J.P., Lonergan,D.J., Jenter,H. and Lovley,D.R. TITLE Isolation of Geobacter species from diverse sedimentary environments JOURNAL Appl. Environ. Microbiol. 62, 1531-1536 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U28173|g886803 BASE COUNT 336 a 334 c 442 g 279 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAG ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG--C (--UU----- ---------- ---------- 241 --------CG -)NC-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GS-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCAG---U -GAUC-U-GG 421 -GAU-AA-CA U--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GA ---GUC-(-- --------UH 541 UG-------- -)-GAU---U CU-KC----G GG--AAAA-- ---GGGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUK--U- G--UCA---- 661 ----CUGG-- AUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-RC-AS- C-A---GU-G 901 GGG-AAUUUU G-CVCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GA 1021 --GG-GAA-- GA-AAUG-AU --UGA-GGG( A----UAAUA -----C---) CCCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-CG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--RCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG A-AACUU-GA GUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCUAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-K UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--CA---- --GS-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGWAGYAC 1801 GRC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--R 1861 C-A--CA-AG CGGUGG-ARC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CKCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---GCGG--- -AA----CCU 1981 -CUA-U--(- GAAA-)-GUA -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--RC AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-M-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 Y-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-USC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CUCAN-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -ASC-AU)-G CCN-CGGUG- AAUAC-GUU- NCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--NU-CGA- CU-GG-UCCC -GAA-G-UGC 3121 G-UGA..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gbc.metred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geobacter metallireducens str. GS-15 ATCC 53774 (T). ACCESSION No information KEYWORDS No information. SOURCE Geobacter metallireducens str. GS-15 ATCC 53774 (T). ORGANISM Geobacter metallireducens. REFERENCE 1 AUTHORS Lovely,D., Giovannoni,S.J., White,D.C., Champine,J.E., Phillips,E.J., Gorby,Y.A. and Goodwin,S. TITLE Geobacter metallireducens gen. nov. sp. nov., a microorganism capable of coupling the complete oxidation of organic compounds to the reduction of iron and other metals JOURNAL Arch. Microbiol. 159, 336-344 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 53774 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L07834 ATCC 53774 (T) = DSM 7120 geog_source= Potomac River, MD biol_source= freshwater sediments isolate_name= GS-15 BASE COUNT 367 a 365 c 499 g 306 t 2839 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGA-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----UGAAG ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGGG--C (--UU----- ---------- ---------- 241 --------CG -)GU-CCCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCAG---U -GAUC-U-GG 421 -GAU-AA-CA U--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-GA ---GUC-(-- --------CU 541 UG-------- -)-GAU---U CU-GC----G GG--AAAA-- ---GGGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUU--U- G--UCA---- 661 ----CUGG-- AUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CUG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCMAU-- GG-GC-(GAA A)-GCC-GNA SG-A|-GCMA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--CU-CG --)GG-UCGU AAA--GCUC| UGUC-GG-GA 1021 --GG-GAA-- GA-AGUG-AU --UGA-GGG( U----UAAUA -----C---) CCCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-CG A-A---GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGA|G UAAA-GCGC- GUG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCUAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CCAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---GCGG--- -AA----CCU 1981 -CUA-U--(- GAAA-)-GUA -G--GGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CCG-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAA-GA-A A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-UGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- CU-GG-UCCC -GAA-G-UGC 3121 G-UGA-G-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-C-A G-CG-CC-CU A-AGGA-AUG GUC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)C- UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gbc.slfred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geobacter sulfurreducens str. PCA ATCC 51573. ACCESSION No information KEYWORDS No information. SOURCE Geobacter sulfurreducens str. PCA ATCC 51573. ORGANISM Geobacter sulfurreducens. REFERENCE 1 AUTHORS Caccavo,F.,Jr., Lonergan,D.J., Lovley,D.R., Davis,M., Stolz ,J.F. and McInerney,M.J. TITLE Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism JOURNAL Appl. Environ. Microbiol. 60, 3752-3759 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51573 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13928|g537442 isolate_name= PCA BASE COUNT 340 a 332 c 455 g 281 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... ....CGGGGU GGUGAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CCGA---G -GAUU-U-GG 421 -GAU-AA-CA U--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------C-C CA-C--G-GG ---GUC-(-- --------UA 541 CG-------- -)-GAU---C UU-GC----G GG--AAAA-- ---GGGGGG- GA--CU---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUCC--U- G--UCU---- 661 ----UCGG-- AUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUC-GG-GA 1021 --GG-GAA-- GA-AAUG-AU --UGA-GAG( C----UAAUA -----C---) CUCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-CG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CG G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---ACGG--- -AA----CCC 1981 -UCC-C--(- GAAA-)-CGG -A-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAU-GA-A A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-C-G-C- AA-UGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- CU-GG-UCCC -GAA-G-UGC 3121 G-UGA-G-CU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-C-A G-CG-UC-CU A-AGGA-AU. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsm.sp.2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfuromonas sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfuromonas sp. ORGANISM Desulfuromonas sp. REFERENCE 1 AUTHORS Stahl,D.A., Key,R., Devereux,R., Stromley,J. and Amann,R.I. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80618 legacy_attribute= biovar:population type 2 BASE COUNT 141 a 113 c 176 g 115 t 3831 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-UA-GA 1021 --GG-GAA-- GA-AAUG-AU --AGU-CGG( U----UAAUA -----C---) CCGG-UU-UU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -UU-GGGC|A UAAA-GCGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGC A-GACUU-GA AUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCUAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG.. .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Peb.propio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pelobacter propionicus str. OttBd1 DSM 2379. ACCESSION No information KEYWORDS No information. SOURCE Pelobacter propionicus str. OttBd1 DSM 2379. ORGANISM Pelobacter propionicus. REFERENCE 1 AUTHORS Evers,S., Weizenegger,M., Ludwig,W., Schink,B. and Schleifer ,K.H. TITLE The phylogenetic positions of Pelobacter acetylenicus and Pelobacter propionicus JOURNAL Syst. Appl. Microbiol. 16, 216-218 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2379 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70954 isolate_name= OttBd1 BASE COUNT 375 a 361 c 493 g 320 t 2827 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAUU ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-GG (--GC----- ---------- ---------- 241 -------UUG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAAUCU---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- UAA--UCU-G C-CUGA---U -GAUC-A-GG 421 -AAU-AA-CA C--------- ------UU-- C(-GAAA-)G -AGGU-G--C UAAUACC-UG 481 AU-AAG---- ---------- -------C-C CA-C--G-AC ---GGC-(-- --------UU 541 UG-------- -)-GUC---G UU-GC----G GG--AAAA-- ---GGGGGG- GA--CC---- 601 --(------- ---AUUU--- ---)------ -----GG--| -CCUUC--U- G--UCA---- 661 ----UCAG-- AUG---A-|G UCUGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GG 1021 --GG-AAA-- GA-AGUG-UA --UUG-UGG( U----UAAUA -----C---) CCAU-GG-UA 1081 ---------- -------C-U U-GA-CGGU- A-CCC-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA AUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---ACGG-A- ACC----CUC 1981 -CCG-A--(- AACG-)-GAG -G-GGUG--- CC-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- GG-------- ----AG---| CCG-UG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GUG-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-A-G-C- GA-AGC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-U CUCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- UU-GG-UCCC -GAA-G-UGC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-UC-CU A-AGGA-AUG GUC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gbc.chapll 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geobacter "chapelleii" str. 172. ACCESSION No information KEYWORDS No information. SOURCE Geobacter "chapelleii" str. 172. ORGANISM Geobacter "chapelleii". REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information REFERENCE 2 AUTHORS Coates,J.D., Phillips,E.J.P., Lonergan,D.J., Jenter,H. and Lovley,D.R. TITLE Isolation of Geobacter species from diverse sedimentary environments JOURNAL Appl. Environ. Microbiol. 62, 1531-1536 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41561|g1136551 isolate_name= 172 BASE COUNT 354 a 337 c 462 g 312 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GAAUU ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-GA (--GC----- ---------- ---------- 241 -------UUG -)CU-CUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAAUUU---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- UAA--UCU-G C-CUGA---U -GAUC-U-GG 421 -GAU-AA-CA U--------- ------UU-- C(-GAAA-)G -AGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-C CA-C--G-AA ---GUC-(-- --------UU 541 UG-------- -)-GAC---U UU-GC----G GG--AAAA-- ---GGGGGG- GA--CC---- 601 --(------- ---UUCG--- ---)------ -----GG--| -CCUUC--U- G--UCA---- 661 ----UCAG-- AUG---A-|G UCUGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CNCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-SCAA CSCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GG 1021 --GG-AAA-- GA-AGUG-UA --UUG-UGG( C----UAAUA -----U---) CCAC-GA-UA 1081 ---------- -------C-U U-GA-CGGU- A-CCC-C-UA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GGSG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUU-GA AUA-----CG G-GA-GAGGG UAG-U|GGAA 1381 UU-CCUGGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------U ---ACGG-A- ACC----UCU 1981 -GUG-A--(- AAGC-)-AGG -G-GGUG--- CC-------- ---UU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- GG-------- ----AG---| CCG-UA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--CUC- 2281 AG--UUGS-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GUG-GG-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CUCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGA- UU-GG-UCCC -GAA-G-UGC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-UC-CU A-AGGA-AUG GUC-GG-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.7 BDELLOVIBRIO_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.7 BDELLOVIBRIO_GROUP. ORGANISM 2.14.4.7 BDELLOVIBRIO_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.7.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.7.1 BDE.BACTERIOVORUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.7.1 BDE.BACTERIOVORUS_SUBGROUP. ORGANISM 2.14.4.7.1 BDE.BACTERIOVORUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bact9D 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 109D. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 109D. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61235|g289317 legacy_attribute= Davis variant of strain 109 isolate_name= 109D BASE COUNT 185 a 129 c 189 g 146 t 3727 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......U-- CAN-U|C-AC -ACUGG-N-N 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCU -(AACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCCGGG-A A........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ........GU -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C -A-GGG-C(- UC-A)A-CCC -UN-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-N-GC(-G AN-G)GCGG- -GUAACUN-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .UUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -NA--NAGAG NGA-A-G-C- UA-AGU-C(G 2881 -GCA)GGUA- ---------- GA-GCAAN-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- N)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUN-AUC 3001 GC-GGA-(UC -NGA-AU)-G CNG-CGGUN- AAUNN-NUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bact9J 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 109J. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 109J. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships amoung the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61234|g289316 legacy_attribute= Jerusalem variant of strain 109 isolate_name= 109J BASE COUNT 187 a 135 c 193 g 153 t 3708 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ..U|----AA G--AUUA-G- CUA-G---UU 721 NG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CNA------- -----UC-UU 781 U-AA-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCU -(AN-G)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUNCGGC.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... ....CUU-GN GUC-----UC G-GA-NNGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-N-GN(-G AN-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-NNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A UU-GANGUN. .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .A-AGUC-CU AAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU --A--CAGAG CGA-A-N-C- UN-AGU-C(G 2881 -GCA)GGUA- ---------- GA-GCAUN-U CGCUU-AAAA -GC-U-AUC- UAAGUUCGGA 2941 U-UGAUCUC- (UGCAAC-U- N)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AU)-G CCG-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bacteW 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio sp. str. W ATCC 27047. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio sp. str. W ATCC 27047. ORGANISM Bdellovibrio sp. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27047 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61238|g289320 isolate_name= W BASE COUNT 216 a 152 c 223 g 173 t 3612 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ...GA----G GU--UAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CCU---- 661 ----CAAG-- AUG---A-|G UCCGC----- -GU|----GA G--AUUA-G- CUA-G---UU 721 NG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-UC 781 U-AA-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGG-C-UCU -(AACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CANAAU-- NG-AG-(GAA A)-CUC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-- C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-NN 1021 --GG-GAA-- UA-AC----- ---------( ------NCAA ---------) ---------- 1081 ---------- ---------- U-GA-AGGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AU....... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ...U-AAG|U CAG---A-GU G-AAA-G--C CA-GGG-C(- UC-A)A-CNN -UN-G-AAG- 1321 -UGCG-UUUG A-AAC-UGUG U-AGCUU-GA GUC-----CU A-GA-GAGGU UAC-U|AGAA 1381 UU-CUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -N-N-GC(-G AA-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CUA--AG-CA CUGACA-CUC AG-A------ -------CC- C-GAAA-GU- GC-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- A-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CU--GU---- --AC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CNN- N-NGGAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UA -A-UGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -CA--CAGAG UGA-A-G-C- UA-AUU-C(G 2881 -CAA)GGUA- ---------- GA-GCAAA-U CACUU-AAAA -GC-C-AUC- UAAGUUCGGA 2941 U-UGAUCUC- (UGAAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bact09 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 109 ATCC 15143. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 109 ATCC 15143. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15143 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61236|g289318 isolate_name= 109 BASE COUNT 211 a 151 c 238 g 185 t 3591 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .A-GG----G GU--NAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--G- C--UCU---- 661 ----UAAG-- AUG---A-|G U-CGC----- -GU|----AA G--AUUN-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-UA-C-UU| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-NC -UCUGG-A-A 841 (CUGA-GA-C UCG)--GUCC -AGG-C-UCA -(AACG)--G GAG-GC-AG- C-A---GU-U 901 GGG-AAUUUU G-CACUAU-- GG-AG-(GAA A)-CUC-UNA UGCN|-NGAG CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-NG 1021 --GG-GAA-- UU-AC----- ---------( ------UCUA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- U-CCC-U-GU N-AG--AAAG ---------G 1141 -AUCCGGC-G U........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ...U-AAG|U CAG---A-GU G-AAA-G--C CA-GGG-C(- UC-A)A-CCC -UG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCAU-GA GUC-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------ACC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGU.. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .........G --GU(-GU-U AA)-ACG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UA -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -CA--CAGAG NGA-A-G-C- UA-AGC-G(G 2881 -CGA)GGUA- ---------- GA-GCANA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CNG-CGGUN- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bac114 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 114 ATCC 15632. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 114 ATCC 15632. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships amoung the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15632 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61230|g289312 biol_source= soil on Proteus mirabilis isolate_name= 114 BASE COUNT 194 a 147 c 240 g 181 t 3614 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ...GG----G GU--UNNN-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--UCU---- 661 ----CNNG-- AUG---N-|G UCCGC----- -GU|----GA G--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-NN-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-NC -NCUGG-A-A 841 (CUGA-GA-C GCG)--GUCC -AGN-C-UCU -(GGNG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACNAU-- NG-AG-(GAA A)-CUC-UNA UGCN|-N-GA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCCGGC.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .........U -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C -A-GGG-C(- UC-A)A-CCC -UN-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUC-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-N-GC(-G AA-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAN- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------NCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|N|N-NNU- G-GGGAG--C 1801 GGU-U---(G UNA)---A-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AAG--UN -A-AGUC-GU NNU-G-GC-C CUUNU-G-UN -UA--GGGC- 2821 U-NCA-CA-C GUG--CUACG AUGGU-A-GU --A--CAGAG CGA-A-G-C- UA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCANN-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCNAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -NGA-AU)-G CNG-CGNUN- AAUNC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bact5S 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 6-5-S. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 6-5-S. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61237|g289319 isolate_name= 6-5-S BASE COUNT 196 a 146 c 217 g 161 t 3656 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... ...UUUU--- ---)------ ---------| -----U--N- C--UCN---- 661 ----UAAN-- NUG---A-|G UCCGC----- -GU|----AA G--ANUN-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-UU 781 U-NA-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C NCG)--GUCC -AGG-C-U-C -(UACG)--G GAG-GC-NG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCCGGC-N AACU.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .....UU-GN GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GNA-GNG(-G UGAAA)-UCN -GN-AGAU-A UC-AACNGG- AAUA-CCGG- 1441 -A-N-GN(-N NA-G)GNGG- -GUANCUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-NNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... ..CU-G-CNG --GU(-GN-U NA)-ACN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UA -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -CA--CAGAG GNA-A-G-C- UA-AGC-N(G 2881 -CGA)GGUA- ---------- GA-GCAAA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-NGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUN- AAUUC-GUU- CCC-GGC... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bac9-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. H-I 0x9-2 ATCC 25630. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. H-I 0x9-2 ATCC 25630. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25630 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61232|g289314 biol_source= host-independent derivative of Ox9-2 isolate_name= H-I 0x9-2 BASE COUNT 199 a 130 c 206 g 158 t 3683 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... ..A-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UNANN-A A|-GGC-NA- CGA------- -----UN-UU 781 U-NA-N-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -NCUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- NG-AG-(GAA A)-CUC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCC..... .........( .......... .........) .......... |......... 1201 .......... .......... .....GGC|G UAA....... ........GU -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C -A-GGG-C(- UC-A)A-CCC -UN-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGA- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-N-GC(-G AN-G)GCGG- -GUAACUN-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NNC- G-CN-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A UU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... ..UAU-G-CN -UA--GGGC- 2821 U-ACA-CA-C GUG--CUANA AUGGU-A-GU -CA--NAGAG CGA-A-G-C- UA-AGC-C(G 2881 -GCA)GGUA- ---------- GA-GCANA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- N)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AU)-G NCG-NNGUN- NAUNN-NUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bac9-3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. H-I 0x9-3 ATCC 25631. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. H-I 0x9-3 ATCC 25631. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25631 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61233|g289315 biol_source= host-independent derivative of Ox9-3 isolate_name= H-I 0x9-3 BASE COUNT 190 a 138 c 212 g 159 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (........C NCG)--GUCC -AGN-C-UC- -(UACG)--G GAG-GN-AG- N-A---GU-A 901 GGG-AAUAUU G-CACAAU-- NG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UN-NC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GU-AUGU- N-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCC..... .........( .......... .........) .......... |......... 1201 .......... .......... .....GGC|G UAA....... ........GU -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C -A-GGG-C(- UC-A)A-CCC -UG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-N-GC(-G AN-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-N---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---.GU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-ANA-UG-G A-CU-N-NCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ANG--UN -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -NN--CAGAG CGA-A-G-N- UA-AGC-C(G 2881 -GNA)GGUA- ---------- GA-GCAAA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CNG-CGNUN- NAUUN-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bac100 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 100 (T) ATCC 15356. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 100 (T) ATCC 15356. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Donze,D., Mayo,J.A. and Diedrich,D.L. TITLE Relationships among the Bdellovibrios revealed by partial sequences of 16S ribosomal RNA JOURNAL Curr. Microbiol. 23, 115-119 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15356 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61241|g289323 isolate_name= 100 (T) BASE COUNT 190 a 138 c 202 g 154 t 3692 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... ..CUGG-N-N 841 (CUGA-GA-C NCG)--GUCC -NGN-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACNAU-- NG-AG-(GAA A)-CUC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCCGGC-U AACUU-A..( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... ........GU -G|-GC-UU- 1261 U-GU-AAG|U NAG---AUGU G-AAA-GC-C -A-GGG-C(- UC-A)A-CNN -UG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACNGG- AAUN-NCGG- 1441 -A-N-GC(-G AN-G)GCGG- -GUAACUN-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- ---C-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAANG.. .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AN 2761 N-UN-NNN-N UG-AAG--UA -A-UNUC-CU NAU-G-GC-N CUUAU-G-CN -UA--GGGC- 2821 U-ACA-CA-C GUG--CUAUC AAGGU-A-GU -CA--CAGAG CGA-A-G-C- UA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCAAA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGC-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bde.bacter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bdellovibrio bacteriovorus str. 109J ATCC 43826. ACCESSION No information KEYWORDS No information. SOURCE Bdellovibrio bacteriovorus str. 109J ATCC 43826. ORGANISM Bdellovibrio bacteriovorus. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43826 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59297 isolate_name= 109J BASE COUNT 383 a 315 c 429 g 318 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UAAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAC -NNAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-G-AC 121 G--------- -----NNGAG ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-UU (--CG----- ---------- ---------- 241 --------GG -)UG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UACUAG---- ---|------ UGUN-GCGC- 361 -A-CG-GG-U GAGG---AAC -GC-GUGGA- UAA--UCU-G C-CUUA---G -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GG ---AGC-(-- --------UG 541 CG-------- -)-GCU---C UA-GG----G GU--CAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CUC---- 661 ----UAAG-- AUG---A-|G UCCGC----- -GU|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GC-AG 1021 --GG-GAA-- UA-AC----- ---------( ------ACAA ---------) ---------- 1081 ---------- ---------- U-GA-AUGU- A-CCC-U-GU A-AG--AAAG ---------G 1141 -AUCGGCU-A ACUUC-GUN( CCA--NNAGC CGCGNNN-A) G-A-C-GAGN |-GAUC-C-- 1201 UAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGG- AUG-UAG-GU -G|-GC-UU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-UAG- 1321 -UGCA-UUUG A-UAC-UGCG A-AGCUU-GA GUG-----UC G-GA-GAGGU UAC-U|AGAA 1381 UU-GUUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AACAGG- AAUA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -GUAACUG-- ---------- ---------- ---------G 1501 CCG--AA-CA CUGACA-CUG AG-A------ -------UC- C-GNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -UU-GU-UGG -AG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GAAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|U-- ---------A ---CUGG--- -AA----GAC 1981 UGGC-A--(- GAAA-)-UGU -C-GUCG--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| UCG-GU-ACA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CA--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-UG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GU -CA--CAGAG CGA-A-G-C- UA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCAAA-U CGCUU-AAAA -GC-U-AUC- UAAGUUCAGA 2941 U-UGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAA A--GU-UGG- CU-GU-ACCA -GAA-G-UCG 3121 N-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CC A-AGGU-AUG GUN-NA-CG- A......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.7.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.7.2 SBR_ISOLATES_VII. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.7.2 SBR_ISOLATES_VII. ORGANISM 2.14.4.7.2 SBR_ISOLATES_VII. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2013 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2013. str. SBR2013. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2013. str. SBR2013. ORGANISM str. SBR2013. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84557|g871678 isolate_name= SBR2013 BASE COUNT 105 a 83 c 127 g 91 t 3970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-CU--A AUAC-NUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- GCUUUCACUC UGUAUUU-AA (--CG----- ---------- ---------- 241 --------AG -)UU-GAAUA UAGUGUGAAA GU-------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -GC-GUAGG- -AA--CGU-A C-CCCA---A -AGUG-A-GG 421 -GAU-AA-GC A--------- ------CC-- G(-GAAA-)C -GGUG-U--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCUGC----- -GU|----AA G--AUUA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2001 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2001. str. SBR2001. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2001. str. SBR2001. ORGANISM str. SBR2001. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84546|g871667 isolate_name= SBR2001 BASE COUNT 104 a 81 c 126 g 91 t 3974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A AUAC-NUGCN A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- GCUUUCACUC UGUAUUU-AA (--CG----- ---------- ---------- 241 --------AG -)UU-GAAUA UAGUGUGAAA GU-------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -GC-GUAGG- -AA--CGU-A C-CCCA---A -AGUG-A-GG 421 -GAU-AA-GC A--------- ------CC-- G(-GAAA-)C -GGUG-U--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---AUC-(-- --------UU 541 CG-------- -)-GAU---- ---------- ----UAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCUGC----- -GU|----AA G--AUUA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-UA- CGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.7.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.7.3 ENV.PAD34_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.7.3 ENV.PAD34_ASSEMBLAGE. ORGANISM 2.14.4.7.3 ENV.PAD34_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1113 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1113. str. SBR1113. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1113. str. SBR1113. ORGANISM str. SBR1113. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84539|g871660 isolate_name= SBR1113 BASE COUNT 101 a 87 c 124 g 71 t 3993 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UUGC-GGC-G -CGC-NU--A AUAC-AUGCA A-GUC-GAAC 121 G--AC----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CUUU---C -AGUG-G-GG 421 -AAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAACACC-GC 481 AU-GAG---- ---------- -------A-C CA-C--A-GG ---GCC-(-- --------UG 541 CG-------- -)-GGC---C UA-GG----G GU--UAAA-- ---AA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUG---- 661 ----AAAG-- AUG---A-|G UCUGC----- -GU|----GG N--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD34 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26221|g498423 library_source= unidentified soil bacterium from paddy field BASE COUNT 76 a 69 c 77 g 54 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--CCU- 2281 AG--UUAC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGG-AA-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUA--CUACA AUGGC-A-GA -GA--CAAAG CGA-C-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CGCAA-AAAC -AC-U-GUC- CAAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2052 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2052. str. SBR2052. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2052. str. SBR2052. ORGANISM str. SBR2052. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84588|g871709 isolate_name= SBR2052 BASE COUNT 99 a 102 c 137 g 78 t 3960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -GGC-UU--A ACAC-AUGCA A-GUC-GAG- 121 G--------- -----GAGAA C--------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAA---- ---|------ ACCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CUCC---G -AGUU-C-GG 421 -GAU-AA-CC U--------- ------GU-- C(-GAAA-)G -AUAG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-C CA-C--G-AU ---GGC-(-- --------UU 541 CG-------- -)-GCC---A CU-GC----G GU--CAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UG-C| -GCUAU--C- G--CUU---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GC|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-U-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GA 961 G-G-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.8 DESULFOBULBUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.8 DESULFOBULBUS_ASSEMBLAGE. ORGANISM 2.14.4.8 DESULFOBULBUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Snp.wolini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophobacter wolinii.. ACCESSION No information KEYWORDS No information. SOURCE Syntrophobacter wolinii. ORGANISM Syntrophobacter wolinii. REFERENCE 1 AUTHORS Harmsen,H.J.M., Wullings,B., Akkermans,A.D.L., Ludwig,W. and Stams,A.J.M. TITLE Phylogenetic analysis of Syntrophobacter wolinii reveals a relationship with sulfate-reducing bacteria JOURNAL Arch. Microbiol. 160, 238-240 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70905 BASE COUNT 338 a 347 c 472 g 267 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-A C-CCCU---G -UGUU-C-GG 421 -GAU-AA-CA G--------- ------UG-- C(-GAAA-)G -CGCU-G--C UAAUACC-GG 481 AU-GCG---- ---------- -------G-C CA-G--G-GG ---GC--(-- --------GG 541 UG-------- -)--GU---U UC-CU----G GU--CAAA-- ---GUCGGC- CUC-UC---- 601 --(------- ---GCA---- ---)------ -----GA-A| -GCUGA--U- G--CAC---- 661 ----GGGG-- AUG---A-|G UCUGC----- -GU|----CC N--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--NGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-CC-(GCA A)-GGC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| NGUC-AG-GU 1021 --GG-GAA-- GA-AUGU-CC --CGG-GGA( A----UAAUA -----C---) GCCU-CG-GG 1081 ---------- -------A-G U-GA-CGGU- A-CCA-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GG-CG- 1261 A-GC-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGUU C-GUCUU-GA GUG-----CU G-GA-GAGGA AGG-G|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CCUUCUG-- ---------- ---------- ---------G 1501 ACG--GC-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(ACU-CA)U ---------- ---------- ---------- -------UCC -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUGAU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CCGG--- -CC----AGG 1981 -CAU-A--(- GAAA-)-UAU -G-UCCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UUU- 2281 AG--UUGC-C UG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --CA(-GU-G AA)-UGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-GG -UA--CAAAG GGA-A-G-C- GA-GCC-U(G 2881 -UGA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CU-GU-ACCA -GAA-G-UGC 3121 G-UGG-G-CU -AA-CUC--- ---------- ---------- -----(---- -UCAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-C-A G-CG-UA-CC A-AGGU-AUG GUC-GG-UA- AUU-GGGG-U 3301 G---AAAUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Snp.wolin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophobacter wolinii.. ACCESSION No information KEYWORDS No information. SOURCE Syntrophobacter wolinii. ORGANISM Syntrophobacter wolinii. REFERENCE 1 AUTHORS Harmsen,H.J.M., Wullings,B., Akkermans,A.D.L., Ludwig,W. and Stams,A.J.M. TITLE Phylogenetic analysis of Syntrophobacter wolinii reveals a relationship with sulfate-reducing bacteria JOURNAL Arch. Microbiol. 160, 238-240 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70906|g418118 BASE COUNT 269 a 266 c 377 g 213 t 3251 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AAU -AAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGCUG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-CGGCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- UAA--UCU-A C-CCCU---G -UGUU-C-GG 421 -GAU-AA-CA G--------- ------UG-- C(-GAAA-)G -CGCU-G--C UAAUACC-GG 481 AU-GCG---- ---------- -------G-C CA-G--G-GG ---GC--(-- --------GG 541 UG-------- -)--GU---U UC-CU----G GU--CAAA-- ---GUCGGC- CUC-UC---- 601 --(------- ---GCA---- ---)------ -----GA-A| -GCUGA--U- G--CAC---- 661 ----GGGG-- AUG---A-|G UCUGC----- -GU|----CC U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-CC-(GCA A)-GGC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUC-AG-GU 1021 --GG-GAA-- GA-AUGU-CC --CGG-GGA( A----UAAUA -----C---) GCCU-CG-GG 1081 ---------- -------A-G U-GA-CGGU- A-CCA-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GG-CG- 1261 A-GC-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGUU C-GUCUU-GA GUG-----CU G-GA-GAGGA AGG-G|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAG-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CCUUCUG-- ---------- ---------- ---------G 1501 ACG--GC-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(ACU-CA)U ---------- ---------- ---------- -------UCC -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUGAU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CCGG--- -CC----AGG 1981 -CAU-A--(- GAAA-)-UAU -G-UCCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-U... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD11 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26198|g498398 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 68 c 89 g 55 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--CUU- 2281 AG--UUGC-C AA-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG ----(-GU-G AA)-UGC-G- -GAGG-AGAG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-GG -UA--CAAAG GGA-A-G-C- GA-GGC-A(G 2881 -UGA)UGCG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drh.amnign 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulforhabdus amnigenus.. ACCESSION No information KEYWORDS No information. SOURCE Desulforhabdus amnigenus. ORGANISM Desulforhabdus amnigenus. REFERENCE 1 AUTHORS Oude Elferink,S.J.W.H., Maas,R.N., Harmsen,H.J.M. and Stams ,A.J.M. TITLE Desulforhabdus amnigenus gen.nov.sp.nov., a sulfate reducer isolated from anaerobic granular sludge JOURNAL Arch. Microbiol. 164, 119-124 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83274|g829103 (bases 15 to 1496) BASE COUNT 346 a 349 c 498 g 286 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GCAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUCUG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--UCU-A C-CCCU---G -GAUU-U-GG 421 -GAU-AA-CA G--------- ------UG-- C(-GAAA-)G -CGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-U--U-U- ---CGC-(-- --------GG 541 GA-------- -)-GCG---- GG-AA----G GU--GAAA-- ---GUCGGC- CUC-UC---- 601 --(------- ---GAA---- ---)------ -----GA-A| -GCUGA--U- G--UUC---- 661 ----GGGG-- AUG---A-|G CCUGC----- -GU|----CC U--AUCA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-CC-(GCA A)-GGC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUC-AG-GU 1021 --GG-GAA-- GA-ACGA-UU --GGG-GGU( C----GAAUA -----G---) GCCU-UU-GA 1081 ---------- -------U-G U-GA-CGGU- A-CCA-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CUG---AUGU G-AAA-GC-C CC-GGG-C(- UU-A)A-CCU -GG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGUC G-GGCUU-GA GUA-----CU G-GA-GAGGA UGG-G|GGAA 1381 UU-CCNGGU- GUA-GAG(-G UGAAN)-UUC -GU-AGAG-A UC-GGGAGG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CCAUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------G|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(ACU-CA)U ---------- ---------- ---------- -------UCC -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCU C|C|G-CCU- G-GGGAUUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CCGG--- -CC----CGC 1981 -UCU-G--(- GAAA-)-CAG -G-GAAU--- UC-------- --CCN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AAUCC-CU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAG-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-GG -UA--CAAAG GGA-A-G-C- GA-GCC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- -CCAC-GAAA G---U-CGG- CU-GU-ACCA -GAA-G-UGC 3121 G-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-C-A G-CG-CA-CC A-AGGU-GUG GUC-GG-UA- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsa.infern 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfacinum infernum str. BalphaG1 ACM 3991 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfacinum infernum str. BalphaG1 ACM 3991 (T). ORGANISM Desulfacinum infernum. REFERENCE 1 AUTHORS Rees,G.N., Grassia,G.S., Sheehy,A.J., Dwivedi,P.P. and Patel ,B.K.C. TITLE Desulfacinum infernum gen. nov., sp. nov., a thermophilic sulfate-reducing bacterium from a petroleum reservoir JOURNAL Int. J. Syst. Bacteriol. 45, 85-89 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27426|g520809 isolate_name= BalphaG1 BASE COUNT 354 a 384 c 511 g 277 t 2850 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AUU -GAAC-GC-- UGGC-GGC-G -UAC-CU--A ACAC-AUGCA A-GUC-GCAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCUGG-GU (--UU----- ---------- ---------- 241 --------CG -)GC-UUGGC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CCUC---G -AAUC-U-GG 421 -GAU-AA-CC U--------- ------CG-- C(-GAAA-)G -CGGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-C CC-------- -------(-- --------UU 541 CG-------- -)-------- ----G----G GA--GAAA-- ---GCCGGC- CUC-UC---- 601 --(------- ---GAA---- ---)------ -----GA-A| -GCUGG--U- G--UUC---- 661 ----GAGG-- AUG---G-|G CCCGC----- -GU|----CC U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GA-(GCA A)-UCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUC-AG-GA 1021 --GG-GAA-- GA-ACCU-CG --CUU-GGG( C----GAAUA -----G---) CCUN-GG-CG 1081 ---------- -------A-C U-GA-CGGU- A-CCU-C-CA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-GC-AG- 1261 N-GC-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGCU C-UGCUU-GA GUA-----CC G-GA-GAGGA AGG-G|GGAA 1381 UU-CCCGGU- GUA-GNG(-G CGAUA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-UC(-G AA-G)GCGC- -CCNUCUG-- ---------- ---------- --------UC 1501 ANG--GU-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UCCUG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GUGCC C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGGG--- -AA----UCC 1981 -UCU-G--(- GAAA-)-CAG -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CCC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ACCCC-CU-G |-CC--UCU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UU ---CGG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGG-C-GG -CA--CAAAG GGC-A-G-C- GA-NCC-U(G 2881 -CGA)GGGG- ---------- GA-GGCAC-U CCCAA-AAAG -CC-G-NCC- UCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -GAAAGG-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-GGGUG- NAUNC-GUC- CCC-GGG-CC UUGUA----C 3061 ANAACGCCC- AUC-ACA--- --CAC-GAAA G--NC-NGG- UU-GU-ACCA -GAA-G-UGC 3121 G-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-UA-CC A-AGGU-AUG GUC-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGAC-GUAG G(GGA-A)CC UGCGNN--UG GAUCACCUCC 3361 UA..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drh.acthrm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulforhabdus acetothermus str. A8444. ACCESSION No information KEYWORDS No information. SOURCE Desulforhabdus acetothermus str. A8444. ORGANISM Desulforhabdus acetothermus. REFERENCE 1 AUTHORS Beeder,J., Torsvik,T. and Lien,T. TITLE Thermodesulforhabdus norvegicus gen. nov., sp. nov., a novel thermophilic sulfate-reducing bacterium from oil field water JOURNAL Arch. Microbiol. 164 (5), 331-336 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25627|g1314249 isolate_name= A8444 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 383 c 541 g 282 t 2817 others ORIGIN 1 .......... ....CUAACA AUCGAAACAU ACCACGAAUC AACUAC(G-G A)U-CCU|-G 61 UCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UAC-CU--A ACAC-AUUCA A-CUC-GCAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGCUGG-GU (--GA----- ---------- ---------- 241 --------AA -)GC--UGGC C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UGA--CCU-A C-CCUG---G -UGUC-U-GG 421 -GAU-AA-CC C--------- ------UG-- C(-GAAA-)G -UGGG-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------C-C UA-C--C-UG ---GAG-(-- --------GU 541 GA-------- -)--UC---U GG-GU----A GG--GAAA-- ---GGGGGC- CUC-UC---- 601 --(------- ---GGA---- ---)------ -----GA-A| -GCUCC--U- G--CAC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GU|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-GAUAUU G-CGCAAU-- GG-CC-(GCA A)-GGC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UGUC-GG-CG 1021 --GG-GAA-- GA-ACCU-UC --AUG-GGG( U----UAAUA -----G---) CCCU-GU-GG 1081 ---------- -------A-C U-GA-CGGU- A-CCC-G-CG G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-GC-AAG|U CUG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -UG-G-AAG- 1321 -UGCA-CUGG A-UAC-UGUG C-GGCUU-GA GUG-----CC G-GA-GAGGA GGG-G|GGAA 1381 UU-CCCGGU- GUA-GCG(-G CGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CCCUCUG-- ---------- ---------- ---------G 1501 ACG--GU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--AC-CU-- -------A|G -GU-GG-UGC -GG-GU---- ---------- 1681 -(UAU-AA)C ---------- ---------- ---------- --------UC -UGCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GUGGG C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---CCGG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGG--- UG-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AU U-)------- GGGG------ ----AG---| CCG-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGA-U-G-C- GA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- -CCAC-GAAA G---U-CGG- CU-GU-ACCA -GAA-G-UGC 3121 G-UGG-G-CC -AA-CCG--- ---------- ---------- -----(--CG AUUGUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GUGGGG-C-A G-CG-UA-CC A-AGGU-AUG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD9 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26196|g498461 library_source= unidentified soil bacterium from paddy field BASE COUNT 62 a 74 c 81 g 59 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GG-G A-CU-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-C-G-C- CA-AGU-C(G 2881 -CGA)GACG- ---------- GA-GCUAA-U CCCAG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -AAUU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.baarsi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio baarsii str. 2st14, Konstanz DSM 2075 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio baarsii str. 2st14, Konstanz DSM 2075 (T). ORGANISM Desulfovibrio baarsii. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2075 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34403 isolate_name= 2st14, Konstanz NB: although same DSM number as Dsv.baars2, not same seq. BASE COUNT 322 a 323 c 436 g 274 t 3021 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..AACUGG AGAGUU(U-G R)U-CCU|-G 61 GCUCNG-AAC -GAAC-GC-- UGGC-GGC-A -GGC-CU--A ACRC-AUGCR A-GUC-GCAC 121 G--------- -----AGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- --G-AU--YC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAA---- ---|------ AGUG-GCGC- 361 -N-CG-GG-U GAGU---AAC -GC-GUGGG- NAA--UCU-R C-CUGA---U -GGUA-C-GG 421 -NAU-AA-CG U--------- ------CU-- C(-GAAA-)G -GGGC-G--C UAAUACC-GU 481 AU-AAG---- ---------- -------A-C CA-C--G-AC ---AAC-(-- --------UG 541 CG-------- -)-GUU---G UU-GC----G GN--NAAA-- ---GGGGGC- CNC-UC---- 601 --(------- ---UAUA--- ---)------ -----GA-A| -GCUCC--U- G--CNN---- 661 ----UUGG-- ACG---A-|G CCNGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-NAC-GG) -C-UCACY-A A|-GGC-CG- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGG-AA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUCUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-GU 1021 --GG-GAA-- GA-ACCC-UC --AAG-GGA( C----GAAUA -----N---) UCCU-UU-GA 1081 ---------- -------G-C U-GA-CGGU- A-CCG-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 RAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GUG-CAG-GC -G|-GC-CR- 1261 A-AU-RAG|U CGG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAC- 1321 -UGCA-UUCG A-UAC-UGCU U-GGCUU-GA GUC-----CU G-UA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AACA-UCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AU-A------ -------CR- C-GAAA-GC- GU-GGG-GA- 1561 GC-RAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--R 1621 AAC-G-GUGU C--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- -A-------- 1681 -(UUG-AG)C ---------- ---------- ---------- -------CCC -CGCUN-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGGA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UY-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---CCGG--- -AC----AGC 1981 -CUR-U--(- GAAA-)-GUA -G-GNNU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A---| CCG-GG-NGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-YY-A |-UC--GUU- 2281 AG--UUGC-C AG-UA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-CA-CU-C- U-AGU-GA-U A-CU-G-CCC --CG(-GU-U NA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-C-GG -UA--CAAAG GGC-U-G-C- UA-AAU-C(G 2881 -CGA)GGUU- ---------- AU-GCCAA-U CCCAA-AAAG -CC-G-GCC- UCNGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AU)-G CCG-GGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dmn.tiedje 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfomonile tiedjei str. DCB-1 ATCC 49306 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfomonile tiedjei str. DCB-1 ATCC 49306 (T). ORGANISM Desulfomonile tiedjei. REFERENCE 1 AUTHORS DeWeers,K.A., Mandelco,L., Tanner,R.S., Woese,C.R. and Suflita,M. TITLE Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium JOURNAL Arch. Microbiol. 154, 23-30 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49306 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26635 isolate_name= DCB-1 BASE COUNT 371 a 344 c 465 g 285 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAACUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --CAUAU-CN (--UU----- ---------- ---------- 241 --------CG -)GG-GUAUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUA---U -GGUU-C-GG 421 -GAU-AA-CU N--------- ------GC-- C(-GAAA-)G -GCNN-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------A-C CA-C--A-UG ---AGC-(-- --------UC 541 CG-------- -)-GCU---C AA-GG----G GU--CAAA-- ---GUCGGC- CUC-UC---- 601 --(------- ---GAC---- ---)------ -----GA-A| -GCCGA--U- G--CCA---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-CG- AGA------- -----UG-GU 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-AG-(GAA A)-CUC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GCCC| UGUC-AG-GC 1021 --GG-GAA-- GA-AACC-UU --UGC-GGA( C----GAAUA -----G---) UCCG-UG-AA 1081 ---------- -------A-C U-GA-CGGU- A-CCG-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GNAG |-NGUG-C-- 1201 NAG-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GUG-UAG-GC -G|-NU-UC- 1261 G-AU-AAG|U CGA---AUGU G-AAA-GC-C CG-AGG-C(- UC-A)A-CCU -CG-G-NAG- 1321 -UGCA-UUCG A-AAC-UGUC G-NGCNU-GA GUA-----CN G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-N AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGA G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCN -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUNNN C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AAA-UC|--- ---------G ---CCCG--- GAC----AGU 1981 -CGU-G--(- GAAA-)-CAC -G-AUCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CNG-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-NG -UA--CAAAG GGC-U-G-C- AA-ACC-U(G 2881 -UGA)AGGG- ---------- GA-GCAAA-U CCCAA-AAAA -CG-G-UUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAA A--GU-UGA- CU-GC-ACCA -GAA-G-UCG 3121 C-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANG-C-A G-GC-GC-CU A-AGGU-GUG GUU-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G27 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G27.. ACCESSION No information KEYWORDS No information. SOURCE clone G27. ORGANISM clone G27. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91279|g987027 BASE COUNT 83 a 68 c 111 g 66 t 4048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -CU-GGNN|N UAAA-GCGC- GUG-UAG-GC -G|-GU-CC- 1261 G-AU-AAG|U CGA---GUGU G-AAA-CC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAG- 1321 -UGCA-UUCG A-AAC-UGUC G-GGCUU-GA GUA-----CG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-A------ -------CN- --NNNA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-C--GU--A 1621 AAC-G-GUGA G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- ---C-(KAA- ---C)G-CA- UUAA-G.... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.9 ENV.A18P_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.9 ENV.A18P_GROUP. ORGANISM 2.14.4.9 ENV.A18P_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A18p 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A18p.. ACCESSION No information KEYWORDS No information. SOURCE clone A18p. ORGANISM clone A18p. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91441|g987746 BASE COUNT 96 a 65 c 111 g 81 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GUGG-C-- 1201 AAG-CGUUAC UC-GGAUUGA -UU-GGGU|G UAAA-GGGU- AUG-UAG-GU -G|-GC-AA- 1261 A-UU-AAG|U CGA---AUGU G-AAA-UC-C CU-UGG-C(- UU-A)A-CCA -AG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGAU U-UGCUU-GA GCG-----AC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCGGU- GUA-ACA(-G UGAAA)-UGU -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--UU-UG CUGACA-CUG AA-A------ -------UA- C-GAGA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-CUG --C-C----- ---------- 1681 -(-UC-UG)- ---------- ---------- ---------- --------GG -CUAGG.... 1741 .......... ...U-(UAA- ---C)A-CU- UUAA-GUGCA C|C|A-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A38t 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A38t.. ACCESSION No information KEYWORDS No information. SOURCE clone A38t. ORGANISM clone A38t. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91461|g987766 BASE COUNT 97 a 66 c 112 g 78 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -UU-GGGU|G UAAA-GGGU- GUG-UAG-GU -G|-UC-CU- 1261 U-AU-AAG|U CGG---GUGU G-AAA-UC-C UU-CAG-C(- UC-A)A-CUG -AA-G-AAU- 1321 -UGCG-CUCG A-AAC-UGCA A-GGAUU-GA GUG-----UA U-GA-GAGGA GAG-G|GGAA 1381 UU-CUUGGU- GUA-AGG(-G UGAAA)-UCU -GU-AGAU-A UC-AAGAAG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 CAU--AC-AA CUGACA-CUG AA-A------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-GU-GCC -CU------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------G -GGGCG-U.. 1741 .......... .....(.AA- ---C)G-CA- UUAA-GUGCA C|C|A-CCU- G-GGGAGUAC 1801 GUC-G---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A48u 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A48u.. ACCESSION No information KEYWORDS No information. SOURCE clone A48u. ORGANISM clone A48u. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91471|g987776 BASE COUNT 90 a 67 c 121 g 74 t 4024 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -UU-GGGN|G UAAA-GGGC- GUG-UAG-GU -G|-GU-CU- 1261 G-AU-AAG|U CAG---GUGU G-AAA-GC-C CC-UGG-C(- UC-A)A-CCA -GG-G-AAG- 1321 -UGCA-UUUG A-AAC-UAUC A-GACUU-GA GUA-----CG G-GA-GGGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--AM---- --K--(-AA- ---C)G-CA- UUAA-GUGCC C|-|G-CCU- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A52p 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A52p.. ACCESSION No information KEYWORDS No information. SOURCE clone A52p. ORGANISM clone A52p. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91475|g987780 BASE COUNT 84 a 65 c 114 g 70 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -UU-GGGC|G UAAA-GAGU- GUG-UAG-GC -G|-GC-CG- 1261 G-UC-AAG|C CAG---AUGU G-AAA-GC-C CA-GGG-C(- UU-A)A-CCC -UG-A-AAG- 1321 -UGCA-UUUG G-AAC-UGGU U-GGCUU-GA GUU-----CG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCGGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-CGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(UUU-AA)U ---------- ---------- ---------- -------CCC -UC....... 1741 .......... ..AC-(KAA- ---C)G-CA- UUAA-GCGCC C|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.10 DBB.PROPIONICUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.10 DBB.PROPIONICUS_GROUP. ORGANISM 2.14.4.10 DBB.PROPIONICUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A36 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A36.. ACCESSION No information KEYWORDS No information. SOURCE clone A36. ORGANISM clone A36. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08391|g475611 NB: 437-503r aberrant to universal pattern BASE COUNT 119 a 101 c 161 g 100 t 3895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUCC| UGUC-AG-AU 1021 --GG-GAA-- GA-------- ---------( ------AGU- ---------) ---------- 1081 ---------- ---------- G-GU-AUCU- G-CCC----- --AA--UA.. .......... 1141 .ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGGG U-AGCUU-GA GUA-----CU G-GA-GGGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GA-UGG--- ---------- 1681 -(-UU-AA)- ---------- ---------- -U-------- -------CGU -CUCAU-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A33 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A33.. ACCESSION No information KEYWORDS No information. SOURCE clone A33. ORGANISM clone A33. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08388|g475608 BASE COUNT 123 a 101 c 164 g 98 t 3890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .).......A CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCC-GU --GCC-GUA( C----AAAUA -----G---) U......... 1081 .......... .......... .......... .........G A-A---GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGNA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GC-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGGG U-AGCUU-GA GUA-----CU G-GA-GGGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GA-UGG--- ---------- 1681 -(-UU-AA)- ---------- ---------- -U-------- -------CGU -CUCAU-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A30 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A30.. ACCESSION No information KEYWORDS No information. SOURCE clone A30. ORGANISM clone A30. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08387|g475607 NB: 437-499r aberrant to universal pattern BASE COUNT 115 a 98 c 163 g 96 t 3904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUYC| UGUC-AG-AU 1021 --GG-GGA-- GA-------- ---------( ------AGG- ---------) ---------- 1081 ---------- ---------- U-GU-A.... .......... .......AAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- NCG-UAG-GC -G|-GC-UG- 1261 U-AU-AAG|U CAG---AUGU G-AAA-GC-C CG-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGCA U-GGCUU-GA GUA-----CU G-GA-GGGGG UGG-U|GGAA 1381 UC-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU --CAA-CU-- -------A|G -GU-GU-UGG -GA-UGG--- ---------- 1681 -(-UU-AA)- ---------- ---------- -U-------- -------CGU -CUCAU-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfs.glycol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfofustis glycolicus str. PerGlyS. ACCESSION No information KEYWORDS No information. SOURCE Desulfofustis glycolicus str. PerGlyS. ORGANISM Desulfofustis glycolicus. REFERENCE 1 AUTHORS Friedrich,M., Springer,N., Ludwig,W. and Schink,B. TITLE Phylogenetic position of Desulfofustis glycolicus gen. nov. sp. nov. and Syntrophobotulus glycolicus gen. nov. sp. nov. two new strict anaerobes growing with glycolic acid JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X99707|g1490230 isolate_name= PerGlyS NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 388 a 348 c 485 g 324 t 2831 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GACC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- UAA--UCU-C C-CCUU---G -CAUU-C-GG 421 -AAU-AA-CU C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-C UG-G--A-AU ---AAU-(-- ---------G 541 AC-------- -)-UUU---U UU-UC----A GA--GAAA-- ---GGCAGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUGU--C- G--UGC---- 661 ----AAGG-- AUG---A-|G CUUGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(-CA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUCC| UGUC-AG-AU 1021 --GG-GAA-- GA-AAUG-UA --UGG-GUA( U----UAAUA -----G---) UGCC-CG-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-AC- 1261 U-UU-AAG|U CAU---AUGU G-AAA-GU-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -UGCA-UGUG A-AAC-UGGA G-UGCUU-GA GUA-----CU G-GA-GGGGG UGG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CCACCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------C|G -GU-GU-UGG -GA-UG---- ---------- 1681 -(GUU-AA)U ---------- ---------- ---------- -------CGU -CUCAU-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---CGGG--- -AA----UCC 1981 -UGU-G--(- GAAA-)-CAC -G--GGA--- GUG------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG A-)------- GG-------- ----AA---| CCC--G-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ----GU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-G--C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GGUC-CU -AU-G-GC-C UUUAU-G-AU -CA--GGGC- 2821 U-ACA-CA-A GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-A-G-C- AA-CAC-A(G 2881 -CGA)UGUG- ---------- AA-GCGAA-U CUCGC-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACGCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(GC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- UU-GU-ACCA -GAA-G-CAG 3121 U-UGA-G-CU -AA-CUA--- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UAGAGG-C-A G-GC-UG-CC A-AGGU-AUG AUC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CUAG G(GGA-A)CC UGGGGC--UG GACUACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbb.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobulbus sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfobulbus sp. ORGANISM Desulfobulbus sp. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40785|g727152 BASE COUNT 129 a 94 c 160 g 105 t 3888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .........G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUCC| UGUC-AG-AU 1021 --GG-GAA-- GA-AGUG-UG --UAG-UUG( U----UAAUA -----C---) CAAU-UA-CA 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-GC- 1261 U-AU-AAG|U CAG---AUGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCA -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGUA G-UGCUU-GA GUA-----CU G-GA-GGGGG UAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUACCUG-- ---------- ---------- ---------G 1501 CCA--NA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NAC- G-CC-GU--A 1621 AAC-N-AUGU C--NA-CU-- -------A|G -GU-GU-UGG -GA-CG---- ---------- 1681 -(GUU-AA)U ---------- ---------- ---------- -------NGU -C........ 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drp.vacuol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulforhopalus vacuolatus str. ltk10. ACCESSION No information KEYWORDS No information. SOURCE Desulforhopalus vacuolatus str. ltk10. ORGANISM Desulforhopalus vacuolatus. REFERENCE 1 AUTHORS Isaksen,M.F. and Teske,A.P. TITLE Psychrotrophic growth by Desulforhopalus vacuolatus gen. nov., sp. nov., a new sulfate-reducing bacterium with gas vacuoles isolated from a tempe rate estuarium, Kysing Fjord, Denmark JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42613|g848981 isolate_name= ltk10 NB: Near-complete 16S rRNA sequence of Desulforhopalus vacuolatus, a new psychrotrophic, vacuolated sulfate-reducing bacterium, related to Desulfobulbus (Delta-Proteobacteria) BASE COUNT 393 a 327 c 448 g 314 t 2894 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- UAA--UCU-A C-CCCG---G -CAUC-U-GG 421 -AAU-AA-CA C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GG 481 AU-AAN---- ---------- ---------- ---------- ---CUG-(-- --------GA 541 AA-------- -)-CAG---- ---------- ----GAAA-- ---GGUGGC- CUC-UU---- 601 --(------- ---UUUA--- ---)------ -----AA-A| -GCCAC--C- G--UAC---- 661 ----CGGG-- AUG---A-|G CUUGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 U-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--CC-UG --)GG-UCGU AAA--AUC-| UGUC-GG-UU 1021 --GG-GAA-- GA-AAUG-UA --UAG-UGG( U----UAAUA -----C---) CCAU-UA-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCA-G-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-CU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GU-C CC-UGG-C(- UC-A)A-CUG -GG-G-AAG- 1321 -UGCA-UAUG A-AAC-UGGU A-GACUU-GA GUA-----CU G-GA-GGGGG AAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGU- -CAACCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CC-- -------A|G -GU-GU-UGG -GA-GG---- ---------- 1681 -(AAU-AU)- ---------- ---------- ---------- -------CCU -CUCAU-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---CGAG--- -AA----UCC 1981 -CGA-U--(- GAAA-)-GUU -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---NAA--)G 2341 U--------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-UA -AA--CAAUG GGC-A-G-C- CA-CAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCUNC-AAAU -UA-U-GUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- UU-GU-ACCA -GAA-G-CAG 3121 C-UAA-G-CU -AAGCUAA-- ---------- ---------- -----(---- --CUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U UAGAGG-C-A G-GC-UG-C- A-AGGU-AUG AUU-AG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbb.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobulbus sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfobulbus sp. ORGANISM Desulfobulbus sp. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40786|g727153 BASE COUNT 115 a 83 c 141 g 89 t 3948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 ....AAUAUU G-CGCAAU-- GG-GG-(GNA A)-CCC-UGA CGCA|-GCNA CGCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--AUCC| UGUC-AG-UU 1021 --GG-GAA-- GA-AAUG-CA --UAU-UGG( C----CAAUA -----C---) CCAU-UA-UG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-G-CA G-AG--GAAG ---------C 1141 -ACNGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GU -G|-GU-CU- 1261 A-UU-AAG|U CAG---AUGU G-AAA-GU-C CC-UGG-C(- UC-A)A-CUG -GG-G-AAG- 1321 -UGCA-UAUG A-AAC-UGGU A-GACUU-GA GUA-----CU G-GA-GGGGG AAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAG-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)NCNA- -CUUCCUG-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACA-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUA.)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbb.propio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobulbus propionicus str. 1 pr 3, Lindhorst ATCC 33891 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfobulbus propionicus str. 1 pr 3, Lindhorst ATCC 33891 (T). ORGANISM Desulfobulbus propionicus. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33891 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34410 ATCC 33891 (T) = DSM 2032 isolate_name= 1 pr 3, Lindhorst BASE COUNT 333 a 271 c 397 g 276 t 3099 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.NAACUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- UAA--CCU-N N-CUUC---A -UGUC-U-GG 421 -AAU-AA-UA C--------- ------GC-- C(-GAAA-)G -GGGU-R--C UAAUACC-GG 481 AU-AUU---- ---------- -------N-U NG-C--U-NU ----UC-(-- --------AU 541 AA-------- -)-GU----U AU-GC----A AG-CRAAA-- ---GGUGGC- CUC-U----- 601 --(------- ---GCAU--- ---)------ ------A-U| -GCUAC--U- G--CRU---- 661 ----GAAG-- AGG---G-|G UCUGC----- -GU|----AC C--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UG-GU 781 N-AG-C-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCG-C|N-AC -ACUGG-C-A 841 (CUGG-AA-C ACG)--GGCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GNA A)-CCC-NNA CGCA|-GCGA CGCN-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GA 1021 --GG-AAA-- GA-AGUG-UA --CAA-UGG( C----UNAUA -----C---) CUNU-UG-UN 1081 ---------- -------U-U U-GA-CGGU- A-CCU-C-UN A-AG--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUN( CCA--GCAGC NNCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUNNU UC-GGAAUCA -CU-NGGN|G UNAA-GGGC- GCG-UAG-GC -G|-GN-UU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CUG -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGUC A-GGCNU-GA GUA-----CC A-GA-GGGGA AAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UNAAA)-UUC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CUN--GA-UA CUNACG-CUN AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU G--AA-CU-- -------A|G -AU-GC-AGG -GG-GU---- ---------- 1681 -(GUN-NA)U ---------- ---------- ---------- -------CCN -NNCUG-UGU 1741 NG--CA---- --GC-(UAA- ---C)G-CA- UUNA-GUU.. .|.|...... .....AGUAC 1801 GGN-N---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUNA-CC UNG-UN-UUG ACA-UC|--- ---------C ---CGGN--- -AA----UCU 1981 -NUU-G--(- GAAA-)-CAA -G-AGAG--- UG-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)N------ NAG------- ----NA---| UCU-GG-AGA |---C|A--G 2161 NN-NC-UGCA UN|G-CUN-- UCG-UNA|-N N-N---NN-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 R-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU NAU-G-GC-C NNUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUC--CUACA AUGGC-C-GA -UA--CAAAG GGC-A-G-C- GA-CAC-U(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -UC-G-GNC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GN-GGA-(U. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbb.3pr10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobulbus sp. str. 3pr10 DSM 2058. ACCESSION No information KEYWORDS No information. SOURCE Desulfobulbus sp. str. 3pr10 DSM 2058. ORGANISM Desulfobulbus sp. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2058 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34411 isolate_name= 3pr10 BASE COUNT 305 a 270 c 396 g 272 t 3133 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~......GA AGAGUU(U-N A)U-UCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-NU--N NCAC-AUGCA A-GUC-GAAC 121 G--------- -----CGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGGGAU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUUCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---RAC -GC-GUAGA- URA--CCU-G N-CCUN---A -UGUC-U-GG 421 -GAU-RC-CC C--------- ------AC-- C(-GAAA-)G -GUGG-R--C UAAUACC-GG 481 AU-GUN---- ---------- -------C-U NN-U--N-UU ---U-C-(-- --------AU 541 NA-------- -)-GCG---U AA-UA----A AG--AAAA-- ---GGUGGC- CUC-UG---- 601 --(------- ---AUAU--- ---)------ -----UA-A| -GCUNC--U- G--CRU---- 661 ----GAGR-- AGG---G-|G UCUGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAG-NG) -C-CUACC-A A|-GGC-AU- CGA------- -----UG-GU 781 N-AG-C-GG| -G-UCU--(G -AGN)-GNAU ----GA-U-- CCG-U|C-AC -ACUGG-C-A 841 (CUGA-AA-C NCG)--GGCC -NGR-C-UCC -(NACG)--G GAG-GC-NG- C-N---GU-G 901 AGG-AAUNUU G-CGCNAU-- GG-GG-(GCN A)-CCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A G-NAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUN-N--AA 1021 --GG-GAA-- GA-AAUG-CA --UAA-UNA( U----UNAUN -----C---) UUNU-UA-UG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-UA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GNAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UNAA-GGGC- ACG-CAG-GC -G|-GC-CU- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CA-CGG-C(- UN-N)A-CCG -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UAUU A-GGNNN-GA GUA-----UC A-GA-GGGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AAUR-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CUG--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GS-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-AGG -GG-GG---- ---------- 1681 -(GUU-NA)U ---------- ---------- ---------- -------CCS -SUCUG-UGC 1741 CG--CA---- --GC-(URA- ---C)G-CA- UURA-GUUGA C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -NAA-GNAAU UG-RCGGG-G -G-C-CC--G 1861 C-R--CN-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AUGNNA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---CAAG--- -AA----UCU 1981 -UCU-A--(- GAAA-)-UAG -A-AGAG--- UG-------- --CUU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| CUU-GG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UUGC-C AG-UAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GU-N NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-S NNUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACN AUGGC-C-GG -UA--CNAAG GGC-A-G-C- GA-CAG-G(G 2881 -CGR)CCUN- ---------- AA-GCGAA-U CCCGU-RAAG -CC-G-GNC- UCNGUCCGGA 2941 U-UGGAGUC- (UGCNAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD60 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26247|g498452 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 69 c 82 g 60 t 4099 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-CC--UUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- GA-ACU-U(G 2881 -CGA)GAGU- ---------- UA-GCGAA-U CCCGA-AAAG -CC-G-UUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A16jk 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A16jk.. ACCESSION No information KEYWORDS No information. SOURCE clone A16jk. ORGANISM clone A16jk. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91439|g987744 BASE COUNT 87 a 70 c 124 g 72 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---ACGU G-AAA-GC-C CA-AGG-C(- UC-A)A-CCU -UG-G-AAU- 1321 -GCGA-UCUG A-AAC-UGGC A-GGCUU-GA GUA-----CU G-GA-GGGGA AAG-U|GGAA 1381 UU-CCCGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC--GGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGAGC-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CACA G-CU-GU--A 1621 AAC-G-AUGU G--CA-CU-- -------A|G -GU-AU-GGG -GG-GGU--- ---------- 1681 -(-GU-UG)- ---------- ---------- -A-------- -------CCC -UCUC--UGU 1741 GC--CGC--- --AS-(UAA- ---C)G-CA- AUAA-GUGCA C|C|G-CCU- G-GGGA.... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A35 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A35.. ACCESSION No information KEYWORDS No information. SOURCE clone A35. ORGANISM clone A35. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08390|g475610 BASE COUNT 124 a 116 c 166 g 104 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCC-GC --AUA-UGG( C---CUAAUA -----C---) CCAU-AU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GU-UA- 1261 C-UU-AAG|U CGG---ACGU G-AAA-GC-U CC-UGG-C(- UC-A)A-CUG -GG-A-GAG- 1321 -GCCG-UUCG A-AAC-UAGG U-AACUC-GA GGA-----UG G-UA-GGGGA UAG-U|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UC CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GA-GAA-CG- -GG(AUUA-G AAAC)-CCC- ----GGUA-U UC----CUA- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GC-GU-AGG -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UCCUG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CG- UUAA-GUUGA C|C|G-CCU- G-GGGACU.. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A1.. ACCESSION No information KEYWORDS No information. SOURCE clone A1. ORGANISM clone A1. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08385|g475605 BASE COUNT 119 a 97 c 155 g 100 t 3905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCC-GC --AUA-UGG( C----UAAUA -----U---) CCAU-UU-GC 1081 ---------- -------G-U U-GA-CGGU- A-CCA-C-UG A-AG--GAAG .......... 1141 .......... .........( .......... .........) .......... |...UG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GC-CU- 1261 G-AU-CAG|U CAG---AUGU G-AAA-GC-C -G-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGUC A-GGCUU-GA GUA-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -GU-GU-UGG -GA-UG---- ---------- 1681 -(GUU-AA)U ---------- ---------- ---------- -------CGU -CUCAU-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.B 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.11 SYNTROPHUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.11 SYNTROPHUS_GROUP. ORGANISM 2.14.4.11 SYNTROPHUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syt.buswel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophus buswellii str. DM-3 DSM 02612 (T). ACCESSION No information KEYWORDS No information. SOURCE Syntrophus buswellii str. DM-3 DSM 02612 (T). ORGANISM Syntrophus buswellii. REFERENCE 1 AUTHORS Wallrabenstein,C., Gorny,N., Springer,N., Ludwig,W. and Schink,B. TITLE Pure culture of Syntrophus buswellii, definition of its phylogenetic status, and description of of Syntrophus gentianae sp. nov. JOURNAL Syst. Appl. Microbiol. 18, 62-66 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 02612 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85131 Former RDP Sids: Stph.buswl DSM 02612 (T) = DSM 2612B isolate_name= DM-3 BASE COUNT 392 a 356 c 482 g 329 t 2817 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCC-GC (--UU----- ---------- ---------- 241 --------CG -)GC-GGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-G C-CUUU---A -AGCG-G-GG 421 -AAU-AA-CU U--------- ------AC-- C(-GAAA-)G -GUGG-G--C UAAUACC-CC 481 AU-AAA---- ---------- -------G-C UA-U--G-G- ---AGC-(-- --------UC 541 CG-------- -)-GUU---- UC-AU----A GC--CAAA-- ---GAGAGC- CUC-UG---- 601 --(------- ---CAUG--- ---)------ -----CA-A| -GCCCU--C- A--CUU---- 661 ----AGAG-- AUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AAUG-UA --UUG-AGG( U----UAACA -----G---) CCUU-UG-UA 1081 ---------- -------C-U U-GA-CGGU- A-CCG-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 UAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GC-UA- 1261 G-GC-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCC -AG-G-ACG- 1321 -UGCA-UUUG A-AAC-UGCU U-GGCUU-GA GUA-----GG G-AA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 UCC--UA-UA CUGACG-CUG AG-A------ -------CG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UCC---AAC- G-CC-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -GU-GU-UG- -AG-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGAA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CGGG--- -AA----UCU 1981 -CCU-G--(- GAAA-)-CGG -G-AGAG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAA-GA-G A-CU-G-CCG --GC(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG AGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-U CUCAA-AAAG -CC-A-UCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCC-GGAA A--AU-UGA- UU-GC-ACCA -GAA-G-UCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(-CCU AUUUAUAGA- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CU A-CGGU-GUG GUU-GG-UA- AUC-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syt.gentia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophus gentianae str. HQGoe1 DSM 8423 (T). ACCESSION No information KEYWORDS No information. SOURCE Syntrophus gentianae str. HQGoe1 DSM 8423 (T). ORGANISM Syntrophus gentianae. REFERENCE 1 AUTHORS Wallrabenstein,C., Gorny,N., Springer,N., Ludwig,W. and Schink,B. TITLE Pure culture of Syntrophus buswellii, definition of its phylogenetic status, and description of of Syntrophus gentianae sp. nov. JOURNAL Syst. Appl. Microbiol. 18, 62-66 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 8423 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85132 Former RDP Sids: Stph.genti isolate_name= HQGoe1 BASE COUNT 392 a 351 c 478 g 337 t 2818 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCC-GC (--UU----- ---------- ---------- 241 --------CG -)GC-GGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GCGU---AAC -GC-GUGGA- UAA--UCU-G C-CUUU---A -AGUU-G-GG 421 -AAU-AA-CU C--------- ------AC-- C(-GAAA-)G -GUGG-G--C UAAUACC-CG 481 AU-AAU---- ---------- -------G-C UA-U--A-U- ---UAC-(-- --------UU 541 CG-------- -)-GUU---- GU-AU----A GC--CAAA-- ---GAGAGC- CUC-UG---- 601 --(------- ---CUUG--- ---)------ -----CA-A| -GCCCU--C- A--CUU---- 661 ----AGAG-- AUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-GG-GU 1021 --GG-GAA-- GA-AAUG-UA --UUG-AGG( U----UAAUA -----G---) CCUU-UG-UA 1081 ---------- -------C-U U-GA-CGGU- A-CCG-C-CA A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUCA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GC-UA- 1261 G-GC-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UU-A)A-CCC -AG-G-ACG- 1321 -UGCA-UUUG A-AAC-UGCU U-GGCUU-GA GUA-----AG G-AA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 UCC--UA-UA CUGACG-CUG AG-A------ -------CG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -GU-GU-UGA -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGAA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CGAG-A- AUC----UCC 1981 -UGG-A--(- AACA-)-GGG -G-AGUG--- CC-------- ---UU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- GG-------- ----AA---| CUC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAA-GA-G A-CU-G-CCG --GC(-GU-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG AGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-U CUCAA-AAAG -CC-A-UCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCC-GGAA A--AU-UGA- UU-GC-ACCA -GAA-G-UCG 3121 U-UGA-G-CU -AA-CC---- ---------- ---------- -----(-CCU AUUUAUAGA- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CU A-CGGU-GUG GUU-GG-UA- AUC-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A17o 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A17o.. ACCESSION No information KEYWORDS No information. SOURCE clone A17o. ORGANISM clone A17o. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91440|g987745 BASE COUNT 81 a 61 c 92 g 72 t 4070 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .UG-UAG-GU -G|-GU-GA- 1261 A-UU-AAG|U CGA---UUGU G-AAA-UC-C CU-UGG-C(- UU-A)A-CCA -AG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGAU U-CGCUU-GA GUG-----AU A-GA-GAGGU AAG-U|GGAA 1381 UU-CCCGGU- GUA-ACA(-G UGAAA)-UGU -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 CUG--UC-UA CUGACA-CUG AA-A------ -------CG- C-GAGA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -GU-GU-CGG -GC-C----- ---------- 1681 -(CUC-UG)- ---------- ---------- ---------- --------GG -UUCGG-UGC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUGAA C|C|G-CCU- G-GG...... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G30 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G30.. ACCESSION No information KEYWORDS No information. SOURCE clone G30. ORGANISM clone G30. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91282|g987030 BASE COUNT 86 a 67 c 113 g 72 t 4038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GGG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GUG-UAGCGC -G|--U---- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CU-GGG-C(- UU-A)A-CCC -AG-G-AAG- 1321 -UGCA-UUUG A-AAC-UGUC U-UGCUU-GA GUA-----CG G-GA-GAGGG AAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 CCC--GA-UA CUGACN-NUG AG-A------ -------CG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -GU-GU-UG- -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -CUCAG-UGC 1741 CG-------- --GM-(KAA- ---C)G-CA- UUAA-GUGAA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.C 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.12 DESULFOBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.12 DESULFOBACTER_GROUP. ORGANISM 2.14.4.12 DESULFOBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.C.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.12.1 DSB.POSTGATEI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.12.1 DSB.POSTGATEI_SUBGROUP. ORGANISM 2.14.4.12.1 DSB.POSTGATEI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.latus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter latus str. AcRS2 DSM 3381 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter latus str. AcRS2 DSM 3381 (T). ORGANISM Desulfobacter latus. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 3381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34414 isolate_name= AcRS2 BASE COUNT 322 a 268 c 393 g 267 t 3126 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~...CUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-G C-CUUC---A -AGCC-U-GG 421 -GAU-AA-CU A--------- ------UU-- C(-GAAA-)G -GGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-A--U-U- ---YAC-(-- --------AY 541 NA-------- -)-GUN---- NA-UU----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGGG-- AUG---A-|G UUUGC----- -GU|----AC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-NN- CGA------- -----UG-GN 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCRAU-- GG-GG-(GCA A)-CCC-NNA CGCA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-CA 1021 --AG-GAA-- GA-AAUU-AG --GAA-UUA( U----UAAUA -----G---) UNGU-UU-CU 1081 ---------- -------A-U U-GA-CGGU- A-CUU-G-UN G-AG--GAAG ---------C 1141 -GCCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GGGG |-GGCG-C-- 1201 NAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-NU- 1261 U-GU-CCG|U NAG---GUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -AGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CG G-GA-GAGGA GAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAU- -CUCUCUN-- ---------- ---------- ---------G 1501 ACC--GR-UA UUGACG-CUN AG-G------ -------CG- N-NAAG-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--CG-CU-- -------C|G -GU-GU-NGC -GG-AU---- ---------- 1681 -(AUU-NA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGNAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -RAA-GGAAU UG-RCGGG-G -G-C-CC--G 1861 C-R--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NUG ACA-UC|--- ---------C ---UGUG--- -AA----UAU 1981 -CCC-G--(- UNAU-)-UGG -G-AUNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UC.|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ......UG|G 2701 G-AA-CU-C- U-GGC-GA-G A-CU-G-CCC --CG(-GU-N NA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU SRU-G-GC-C CUNAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGC-A-G-C- GA-CUU-U(G 2881 -CRR)RAAG- ---------- AA-GCGAA-U CCCAA-AANG -CC-U-NUC- CCAGUCCGAA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.4ac11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter sp. str. 4ac11 DSM 2057. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter sp. str. 4ac11 DSM 2057. ORGANISM Desulfobacter sp. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2057 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34416 isolate_name= 4ac11 BASE COUNT 368 a 315 c 440 g 313 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGG AGAGUU(U-G R)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -R-CG-GG-U GAGU---AAC -RC-GUAGA- UAA--UCU-G C-CUUC---A -AGCC-U-GG 421 -GAU-AA-CU A--------- ------UC-- C(-GAAA-)G -GAUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-A--U-U- ---UAC-(-- --------AC 541 AA-------- -)-GUA---- GA-CC----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGGG-- AUG---A-|G UUUGC----- -GU|----AC C--AUUA-G- CUA-G--GUU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-NG- NGA------- -----UG-GU 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGG-AA-C GCG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--NN-UG --)GG-UCGU AAA--GCUC| UGUC-WA-CW 1021 --AG-GAA-- GA-AAUU-AG --GAU-CUA( U----UAAUA -----G---) UGGG-UU-CU 1081 ---------- -------A-U U-GA-CGGU- A-CUU-U-UG G-AG--GAAG ---------C 1141 -GCCGGCU-N ACUCK-KUG( CCA--GCAGC NGCGGUA-A) C-A-C-GGGG |-GGCG-C-- 1201 NAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UNAA-GGGN- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-CUG|U UAG---GUGU G-AAA-GC-N -G-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CG G-GA-GAGGA GAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAU- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUN AG-G------ -------CG- N-NAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--N 1621 AAC-G-UUGU A--CA-CU-- -------C|G -GU-GU-AGC -GG-AU---- ---------- 1681 -(AUU-NA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- N-GNNNGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAU 1981 -CCC-G--(- UAAU-)-UGG -G-RURG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GGC-GA-G A-CU-G-CCC --CG(-GU-C AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGC-A-G-C- GA-CUU-U(G 2881 -CAA)AAAG- ---------- GA-GCGAA-U CCCNA-AAAG -CC-U-AUC- UCAGUCCGAA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGA- UU-AU-ACCC -GAC-G-UCR 3121 C-UGG-G-CU -AA-CU---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.hyphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter hydrogenophilus str. AcRS1 DSM 3380 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter hydrogenophilus str. AcRS1 DSM 3380 (T). ORGANISM Desulfobacter hydrogenophilus. REFERENCE 1 AUTHORS Amann,R.I., Stromley,J., Devereux,R., Key,R. and Stahl,D.A. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information REFERENCE 2 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 3380 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34412 isolate_name= AcRS1 BASE COUNT 353 a 297 c 415 g 293 t 3018 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~....ACUG AGAGUU(U-G R)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --ARGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -R-CG-GG-U GAGU---AAC -RC-GUAGA- UAA--UCU-G C-CUUC---A -AGCC-U-GG 421 -AAU-AA-CU A--------- ------UU-- C(-GAAA-)G -GGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-A--U-U- ---UAC-(-- --------AC 541 NA-------- -)-GUR---- GA-UU----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGGG-- AUG---A-|G UCUGC----- -GG|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AG- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-CU 1021 --GG-GAA-- GA-AAUU-AG --CUU-CUA( U----UAAUA -----G---) UAGU-UG-CU 1081 ---------- -------A-U U-GA-CGGU- A-CCA-G-UN G-AC--GAAG ---------C 1141 -GCCGGCN-A ACUCN-GUG( CCA--GCAGC NGCGGUA-A) C-A-C-GGGG |-GGCG-C-- 1201 NAG-CGUNAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-NU- 1261 U-GU-CCG|U CAG---GUGU G-AAA-GC-U CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CG G-GA-GAGGA GAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAU- -CUCUCUR-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUN AG-G------ -------CG- C-NAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------C|G -GU-GU-NGC -GG-AU---- ---------- 1681 -(AUU-NA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CU--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GNRAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAU 1981 -UGU-G--(- UAAU-)-UGC -A-AUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |NU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---N(---UR ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GGC-GA-G A-CU-G-CCC --CR(-GN-N NA)-CGG-G- -RAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGC-A-G-C- GA-CUC-U(G 2881 -CRR)AGGG- ---------- AA-GCGAA-U CCCA--AAAG -CC-U-AUC- UCAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.3ac10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter sp. str. 3ac10 DSM 2035. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter sp. str. 3ac10 DSM 2035. ORGANISM Desulfobacter sp. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2035 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34415 isolate_name= 3ac10 BASE COUNT 365 a 291 c 418 g 299 t 3003 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGG AGAGUU(U-G R)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CR-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- UAA--UCU-G C-CUUC---A -AGCC-U-GG 421 -GAU-AA-CU A--------- ------UU-- C(-GAAA-)G -GGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-A--U-U- ---CAC-(-- --------AU 541 AA-------- -)-GUA---- AA-UU----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGGG-- AUG---A-|G UUUGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-CA 1021 --AG-GAA-- GA-AAUU-AC --AAU-UAU( U----UAAUA -----G---) AUAA-UU-GU 1081 ---------- -------A-U U-GA-CGGU- A-CUU-G-UA G-AG--GAAG ---------C 1141 -GCCGGCN-A ACUC.....( .......... ...GGUA-A) C-A-C-GGGG |-GGCG-C-- 1201 AAG-CGUUAA UU-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-CCG|U CAG---GUGU G-AAA-GC-U CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CG G-GA-GAGGA GAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAU- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUN AG-G------ -------CG- C-UAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------C|G -GU-GU-GGC -GG-AU---- ---------- 1681 -(AUU-UA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAU 1981 -CCC-G--(- UAAU-)-UGG -G-AUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-N(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GGC-GA-G A-CU-G-CCC --GG(-GU-C NA)-CGG-G- -GAGG-A-AG 2761 G-UR-GGG-N UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGC-A-C-C- GA-CUC-U(G 2881 -CAA)AGGG- ---------- AA-GCGAA-A UCCCA-AAAG -CC-U-AUC- UCAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAU-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.curvat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter curvatus str. AcRM3 DSM 3379 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter curvatus str. AcRM3 DSM 3379 (T). ORGANISM Desulfobacter curvatus. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 3379 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34413 isolate_name= AcRM3 BASE COUNT 338 a 293 c 428 g 285 t 3032 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~..ACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGN---NAC -AC-GURGA- URA--UCU-G C-CUUC---A -AGCC-U-GG 421 -GAU-AA-CU R--------- ------UU-- C(-GAAA-)G -GGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-G--N-N- ---CAC-(-- --------NN 541 NA-------- -)-GUG---- GA-UU----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGGG-- AUG---A-|G UUUGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGR-C-UCN -(NACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-GA-CU 1021 --GG-GAA-- GA-AGUU-CC --AAU-GUU( U----UAAUA -----G---) AAGG-UG-GU 1081 ---------- -------A-U U-GA-NGGU- A-CCA-G-GG G-AG--GAAC ---------G 1141 -ACCGGCN-N ACUCC-GUG( CCA--GCAGC AGCGGUA-A) C-A-C-NNNG |-GGGG-C-- 1201 NAG-CGUUAU UC-GGAAN-A -UU-GGGC|N UAAA-GGGC- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-CCG|U CAG---GUGU G-AAA-GC-U CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CC G-UA-GAGGA GAG-A|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAU- -CUCUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUN AG-G------ -------CG- N-NAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--N 1621 AAC-G-UUGU A--CN-CU-- -------C|G -GU-GU-NGC -GG-AU---- ---------- 1681 -(AUN-NA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-GU CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAY 1981 -YGR-G--(- UAAU-)-NGN -R-RUNG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCC --GG(-GU-N NA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACG-CG-C GUG--CUACN AUGGU-A-GG -UA--CAAAG GGC-A-G-C- GA-CUU-U(G 2881 -CRR)AAAG- ---------- AA-GCGAA-U GCCCA-AAAG -CC-U-AUC- GCNGUCCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUN- AAUAU-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.postga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter postgatei str. 2 ac 9 DSM 2034. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter postgatei str. 2 ac 9 DSM 2034. ORGANISM Desulfobacter postgatei. REFERENCE 1 AUTHORS DeWeerd,K.A., Mandelco,L., Tanner,R.S., Woese,C.R. and Suflita,J.M. TITLE Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium JOURNAL Arch. Microbiol. 154, 23-30 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 2034 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26633 isolate_name= 2 ac 9 BASE COUNT 393 a 329 c 457 g 320 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-G C-CUUC---A -AGCC-U-GG 421 -GAU-AA-CU A--------- ------UU-- C(-GAAA-)G -GGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U CG-A--U-U- ---UAC-(-- --------AC 541 AA-------- -)-GUA---- GA-UU----G AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGAG-- AUG---A-|G UUUGC----- -GU|----AC C--AUUA-G- CUU-G---NN 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-CA 1021 --GG-GAA-- GA-AGUU-AC --AAU-UGU( U----UAACA -----G---) AUGG-UU-GU 1081 ---------- -------A-U U-GA-CGGU- A-CCU-G-UG G-AG--GAAG ---------C 1141 -GCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) N-A-C-GGGG |-GGCG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-CU- 1261 U-GU-CCG|U CAG---GUGU G-AAA-GC-U CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-AGCA A-GACUU-GA AUA-----CG G-GA-GAGGA ANG-C|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA UUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--CA-CU-- -------C|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------ACC -UGCUN-UGC 1741 CC--NA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-NNNAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAU 1981 -CCC-G--(- UAAU-)-UGG -G-AUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---U(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCN --GG(-GU-C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAAG GGC-A-G-C- GA-CUC-C(G 2881 -CAA)GGGG- ---------- AA-GCCAA-U CCCA--AAAG -CC-U-AUC- UCAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAU-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCCN- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-AU-ACCC -GAC-G-UCG 3121 C-UGG-G-CU -AA-CU---- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-C-A G-GC-GC-CU A-AGGU-AUG GUC-GA-UA- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsb.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacter sp. ORGANISM Desulfobacter sp. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40787|g727151 BASE COUNT 124 a 95 c 149 g 100 t 3908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... ....CAAU-- GG-GN-(NNA A)-CCC-UNN NGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UUGU AAA--GCUC| UGUC-GA-CA 1021 --GG-GAA-- GA-AAUU-AC --UUC-AUA( N----NAAUA -----U---) CGNN-NN-GU 1081 ---------- -------A-U U-GA-CGGU- A-CCU-G-UA G-AG--GANG ---------N 1141 -ACCGGCN-A ACUNN-GNN( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CNUUNU UC-GGNAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 U-GU-CGG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-AGCA A-GACUU-GA AUA-----CU G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA UUGACG-CUG AG-G------ -------CG- C-GAAG-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CA-GU--A 1621 AAC-G-UUGU U--CA-CU-- -------C|N -GU-GU-ACG -GG-AU---- ---------- 1681 -(AUU-NN)N ---------- ---------- ---------- -------AUC -UGGNC-UUC 1741 CN--NA---- --GC-(UAA- ---C)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbu.toluol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacula toluolica str. Tol2 DSM 7467. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacula toluolica str. Tol2 DSM 7467. ORGANISM Desulfobacula toluolica. REFERENCE 1 AUTHORS Rabus,R., Nordhaus,R., Ludwig,W. and Widdel,F. TITLE Complete oxidation of toluene under strictly anoxic conditions by a new sulfate-reducing bacterium JOURNAL Appl. Environ. Microbiol. 59, 1444-1451 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 7467 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70953 isolate_name= Tol2 BASE COUNT 410 a 331 c 471 g 338 t 2826 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-A C-CUUC---A -AGCC-C-GG 421 -GAU-AA-CU G--------- ------CC-- C(-GAAA-)G -GACA-G--C UAAUACC-GG 481 AU-GAA---- ---------- -------G-U UG-A--U-U- ---CAC-(-- --------AC 541 AA-------- -)-GUG---- AA-UU----A AU--GAAA-- ---GAUUGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCAAU--U- G--UUU---- 661 ----GGAG-- AUG---A-|G UUUGC----- -GG|----AC C--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UG- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-UA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--GCUC| UGUC-GA-CA 1021 --GG-GAA-- GA-AAUU-AG --AGU-UUU( C----UAAUA -----G---) GAGA-UU-CU 1081 ---------- -------A-U U-GA-CGGU- A-CCU-G-UA G-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 U-GU-CGG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-ACG- 1321 -UGCA-UUUG A-AAC-AGCA A-GACUU-GA GUA-----CG G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-GGC -GG-AU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CC--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UGUG--- -AA----UAG 1981 -CGA-A--(- GAGA-)-UUA -G-AUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-AA -UA--CAGAG GGC-A-G-C- AA-GCC-G(G 2881 -CAA)CGGU- ---------- AA-GCGAA-U CCCU--AAAG -UU-U-AUC- UCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UU-AU-ACCC -GAC-G-UCG 3121 U-UGG-G-CU -AA-CUA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UAGAAG-C-C G-GC-GC-CU A-AGGU-AUG GUU-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUUG A(GGA-A)UC AGCGGC--UG GAUCACCUCC 3361 UUNN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s4 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s4. str. s4. ACCESSION No information KEYWORDS No information. SOURCE str. s4. str. s4. ORGANISM str. s4. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69308|g1181120 isolate_name= s4 BASE COUNT 89 a 68 c 115 g 71 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGGG |-GGUG-C-- 1201 GAG-CGUUA- UC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 U-GU-CGG|U CAG---AUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-ACG- 1321 -UGCA-UUUG A-AAC-AGCA A-GACUU-GA GUA-----CG G-UA-GAGGA AAG-C|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-AA)A ---------- ---------- ---------- -------AUC -UGCUG-UGC 1741 CG--CC---- --AS-(UAA- ---C)G-CA- UUAA-GUGUA C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbm.autcum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacterium autotrophicum. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacterium autotrophicum. ORGANISM Desulfobacterium autotrophicum. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34409 BASE COUNT 340 a 287 c 399 g 293 t 3057 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~.AACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGGAU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CUUU---G -AAUC-C-GG 421 -GAU-AA-CU G--------- ------UU-- C(-GAAA-)G -AAUC-G--C UAAUACC-GG 481 AU-GAA---- ---------- -------G-U CA-G--U-NU ---UUC-(-- --------CU 541 UG-------- -)-GAA---G GA-UU----G AU--GAAA-- ---GACAGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUNU--U- G--UUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GC|----AC C--AUUA-G- UUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-NU- UNA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -NCUGG-A-A 841 (CUGA-CA-C ACG)--GUCC -NGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GN-(GCN A)-CCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UN-UG --)GG-UCGU AAA--GCUC| UGUC-AA-UG 1021 --GG-GAA-- GA-AGUU-RC --UUC-AUA( U----UAAUR -----G---) UAUG-UN-GU 1081 ---------- -------A-U U-GA-CGGU- A-CCC-A-UN N-NN--GAAG ---------C 1141 -ACCGGCN-N ACUCC-GUG( CCA--GCANN NNCGGUA-A) U-A-N-GGAG |-NGUG-C-- 1201 NAG-CGUNAU UC-GGAAUNA -UU-NGGN|G UNAA-GGGC- ACG-CAG-GC -G|-GU-NU- 1261 U-GC-CAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -UG-G-AAG- 1321 -UGCA-UUUG A-AAC-UACA A-GGCUU-GA GUA-----CG G-UN-GAGGA AAG-G|GGNA 1381 UU-CCUNGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CNNUCUG-- ---------- ---------- ---------G 1501 ACC--SN-NA CUGACG-CUN AG-G------ -------UN- C-NAAG-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--UA-CU-- -------A|G -GU-GU-AGC -GG-GN---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCN -UGCUG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUA C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCAA-C G)--CGCAGA 1921 A-CCUUA-CC CAG-AC-UUG ACA-UC|--- ---------C ---UGAG--- -AA----UCU 1981 -GUU-A--(- GAGA-)-UAU -U-AGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GAA-GA-G A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-NG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUUAU-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--NUACA AUGGU-A-UG -UA--CNACG GGC-A-G-C- GA-ACC-U(G 2881 -CNN)AGGU- ---------- GN-GCGAA-U CCCUN-AAAG -CA-U-AUC- CCAGUCCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA.(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbm.niacin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacterium niacini. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacterium niacini. ORGANISM Desulfobacterium niacini. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34406 BASE COUNT 292 a 252 c 340 g 256 t 3236 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UAACUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUGCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGAAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAG---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--UCU-A C-CUUC---A -AAUC-G-GG 421 -AAU-AA-CC A--------- ------UU-- C(-GAAA-)G -GAUG-G--C UAAUGCC-GG 481 AU-AAA---- ---------- -------G-U CA-G--A-UR ---UUC-(-- --------UU 541 UG-------- -)-GAG---U AU-UU----G AU--GAAA-- ---GGGUGC- CUC-UG---- 601 --(------- ---AUUG--- ---)------ -----AA-A| -GCAUC--U- G--UUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GC|----AC C--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-UN- CGA------- -----UG-GU 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-CA-C ACG)--GUCC -RGR-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UNA CGCA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--NN-NG --)GG-UCGU AAA--GCUN| UGUC-CA-UG 1021 --GG-GAA-- GA-AAUU-AU --UUA-GUG( U----URAUR -----G---) CAUN-NU-UU 1081 ---------- -------A-U U-GA-C.... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CNGUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUS AG-G------ -------UG- C-GAAG-GC- GU-GGG-NA- 1561 GC-GAA-CG- -GG(AUUA-G AURC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--UG-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GC)C ---------- ---------- ---------- --------CN -UGCUN-CGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUA C|C|G-CCU- N-NNNNGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UURAUU-CG -(ACNNAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-AC-UUG ACA-UC|--- ---------U ---UGAG--- -AA----UCC 1981 -UUU-C--(- GAAA-)-GUU -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GN-------- ----NG---| CUC-AA-AGA |---C|A--G 2161 NN-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUC- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 --AA-CU-C- U-GAA-GA-G A-CU-G-CCC --CG(-GU-N AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CNNAU-G-UC -U---GGGC- 2821 U-ACR-CR-C GUG--CUACA AUGGU-A-UG -UA--CAACG GGC-A-G-C- AA-NGC-A(G 2881 -CGA)UGCC- ---------- AA-GCAAA-U CCCUU-AAAG -CA-U-AUC- CCRGUCCGGA 2941 U-UGGAGUC- (UGCRAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dbm.vacuol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfobacterium vacuolatum. ACCESSION No information KEYWORDS No information. SOURCE Desulfobacterium vacuolatum. ORGANISM Desulfobacterium vacuolatum. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34408 BASE COUNT 345 a 295 c 411 g 294 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-UCU|-G 61 GCUCAG-RAU -NAAC-GC-- UGGC-GGN-G -UGC-RN--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----RGRAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUUSC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGAAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGGAG---- ---|------ AGUG-GCGC- 361 -U-CG-GG-N GAGU---AAC -UC-GUGGA- UAA--UCU-A C-CUUC---A -AAUC-G-GG 421 -AAU-AA-CC A--------- ------UU-- C(-GAAA-)G -GAUG-G--C UAAUGCC-GG 481 AU-AAA---- ---------- -------G-U CA-G--A-UR ---UUC-(-- --------UU 541 UG-------- -)-GRR---U NU-UU----G AU--GAAA-- ---GGGAGC- CUC-UG---- 601 --(------- ---NAUA--- ---)------ -----UA-A| -GCUNU--U- G--UUU---- 661 ----GAAG-- AUG---A-|G UCCGC----- -GC|----AC C--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GAC-UG- UGA------- -----UG-GU 781 N-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-CA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--GCUC| UGUC-AC-A- 1021 --GG-GAA-- GA-AAUU-AU --UAU-GCU( U----UAAUA -----G---) AGUG-UR-GU 1081 ---------- -------A-U U-GA-CGGU- A-CCC-U-GU G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-NGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-CC- 1261 U-GU-CAG|U CAG---AUGU G-AAA-GC-C -G-GGG-C(- UC-A)A-CCC -CG-G-ACG- 1321 -UGCA-UUUG A-AAC-AGCA G-GNCUU-GA GUA-----CG G-NN-GAGGA AAG-G|GNNN 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CNNUCUR-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUN AG-G------ -------UA- C-NAAG-GC- GU-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGU A--UG-CU-- -------A|G -GU-GU-AGC -RG-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUN -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-AC-UUG ACA-UC|--- ---------U ---UGAG--- -AA----UCC 1981 -UNU-A--(- GAAA-)-UUU -A-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUC-AA-AGA |---C|A--G 2161 GU-GC-UCCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GAA-GA-G A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AGUC-CU CAU-G-GC-C CUNAU-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -UA--CAACG GGC-R-G-C- AA-GGC-A(G 2881 -CGA)UGCC- ---------- AA-GCAAA-U CCCUU-AAAG -CA-U-AUC- CCAGUCCGGA 2941 U-UGGAGUC- (UGCGAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCN-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.4.C.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.4.12.2 DSS.VARIABILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.4.12.2 DSS.VARIABILIS_SUBGROUP. ORGANISM 2.14.4.12.2 DSS.VARIABILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD25 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26212|g498413 library_source= unidentified soil bacterium from paddy field BASE COUNT 64 a 75 c 83 g 56 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CC--CUU- 2281 AG--UUAC-C AU-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- U-AAG-GG-G A-CU-G-CCC --CG(-GA-A AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAG GGU-C-G-C- AA-CGC-C(G 2881 -CGA)GGCU- ---------- GA-GCUAA-U CCCAA-AAAA -UC-G-CCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dss.varia2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfosarcina variabilis str. 3 be 13, Montpellier DSM 2060 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfosarcina variabilis str. 3 be 13, Montpellier DSM 2060 (T). ORGANISM Desulfosarcina variabilis. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 2060 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34407 isolate_name= 3 be 13, Montpellier BASE COUNT 380 a 338 c 458 g 328 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUC---G -AAUU-G-GG 421 -GAU-AA-CG U--------- ------UG-- C(-GAAA-)G -CGAC-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-U CC-A--A-AU ---AUC-(-- --------UU 541 CG-------- -)-GAU---U UU-UG----G AU--CAAG-- ---GGUGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUAC--U- G--UUU---- 661 ----GAAG-- AUG---G-|G CCCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-CA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCU-AU --AUA-AUG( U----UAAUA -----U---) CAUU-AU-AU 1081 ---------- -------A-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -UU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGUC A-GGCUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA U--CA-CU-- -------A|G -GU-GU-AGC -RG-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACA-UC|--- ---------C ---CGGG--- -AA----UCC 1981 -UAU-C--(- GAAA-)-GAC -U-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-GG-WGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GA-U A-CU-G-CCC --CG(-GU-C AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGU-A-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAA-AAAG -CC-G-UCC- CAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UU-GU-ACCC -GAA-G-UCG 3121 U-CGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-C-A N-GC-GC-CU A-AGGU-AUG GCU-GA.... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dss.variab 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfosarcina variabilis str. 3 be 13, Montpellier DSM 2060 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfosarcina variabilis str. 3 be 13, Montpellier DSM 2060 (T). ORGANISM Desulfosarcina variabilis. REFERENCE 1 AUTHORS DeWeerd,K.A., Mandelco,L., Tanner,R.S., Woese,C.R. and Suflita,J.M. TITLE Desulfomonile tiedjei gen. nov. and sp. nov., a novel anaerobic, dehalogenating, sulfate-reducing bacterium JOURNAL Arch. Microbiol. 154, 23-30 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 2060 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26632 isolate_name= 3 be 13, Montpellier BASE COUNT 381 a 338 c 456 g 324 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUNAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GUAC 121 G--------- -----AGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUC---G -AAUU-G-GG 421 -GAU-AA-CG U--------- ------UG-- C(-GAAA-)G -CGAC-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-U CC-A--A-AU ---AUC-(-- --------UU 541 CG-------- -)-GAU---U UU-UG----G AU--CAAG-- ---GGUGGC- CUC-UU---- 601 --(------- ---CUUG--- ---)------ -----AA-A| -GCUAC--U- G--UUU---- 661 ----GAAG-- AUG---G-|G CCCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-CA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCU-AU --AUA-AUG( U----UAAUA -----U---) CAUU-AU-AU 1081 ---------- -------A-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -UU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAG- 1321 -UGCA-UUUG A-UAC-UGUC A-GGCNU-GA GNA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------UG- C-NAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA U--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACA-UC|--- ---------C ---CGGG--- -AA----UCC 1981 -UAU-C--(- GAAA-)-GAC -U-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GA-U A-CU-G-CCC --CG(-GU-C AA)-CGG-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -NA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGU-A-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CCCAA-AAAG -CC-G-UCC- CAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UU-GU-ACCC -GAA-G-UCG 3121 U-CGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-C-A N-GC-GC-CU A-AGGU-AUG GCU-GA.... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G24 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91276|g987024 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 85 a 69 c 109 g 75 t 4038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .........G |-GGUG-C-- 1201 AAG-CGUUAU CC--GAAUUA -UU-GGGC|G UAAA-GGNNN NNG-UAG-GC C-|-GC-UU- 1261 UAAU-AAG|U CCG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUC -CG-G-AAG- 1321 -UGCA-UUGG A-UAC-UGUA A-GGCUU-GA GUA----UUG G-GA-GAGGG UAG-C|GGAA 1381 UU-CCUGGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-U-UUGA U--CA-CU-- -------A|G -GU-GU-AGC --G-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--C----- ---M-(KAA- ---C)G-CA- UUAA-GUGAU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD42 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26229|g498432 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 67 c 78 g 64 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GA-U A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-UG -UA--CAAAG GGU-U-G-C- AA-GCC-C(G 2881 -CGA)GG-U- ---------- GA-GCUAA-U CCCAG-AAAG -CA-G-CUC- GUAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP552 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP552.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP552. ORGANISM clone JAP552. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09845|g495564 BASE COUNT 77 a 66 c 83 g 63 t 4087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCUCG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GAAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -AGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G U-CCUU---A -AAUU-U-GG 421 -GAU-AA-UC C--------- ------AC-- C(-GAAA-)G -GUCC----C UAAUACC-AG 481 AU-ACA---- ---------- -------A-C CC-U--G-AG ---AAC-(-- --------CU 541 UG-------- -)-GUU---C UC-CG----G AU--GAAA-- ---GCUGAC- CUC-UU---- 601 --(------- ---CGUG--- ---)------ -----AA-A| -GUUGG--C- G--UUU---- 661 ----AAGG-- AGG---G-|G CUCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-AGAC ----GG-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-AA-C ACG)--GUCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dcc.multiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfococcus multivorans str. 1 be 1, Goettingen ATCC 33890 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfococcus multivorans str. 1 be 1, Goettingen ATCC 33890 (T). ORGANISM Desulfococcus multivorans. REFERENCE 1 AUTHORS Amann,R.I., Stromley,J., Devereux,R., Key,R. and Stahl,D.A. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information REFERENCE 2 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33890 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34405 ATCC 33890 (T) = DSM 2059 isolate_name= 1 be 1, Goettingen BASE COUNT 330 a 296 c 430 g 291 t 3029 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UAAUUGA CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GCAC 121 G--------- -----AGAAC ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCUUC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGGGC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---G -GAUU-C-GG 421 -GAU-AA-CC C--------- ------UU-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-GAA---- ---------- -------G-U CA-U--U-UA ---GGC-(-- --------UG 541 UG-------- -)-GUU---U AG-AU----G AU--GAAA-- ---GGUGGC- CUC-UC---- 601 --(------- ---CGAG--- ---)------ -----GA-A| -GCUAC--C- G--UUU---- 661 ----GGGG-- AUG---A-|G CCCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-CA-C ACG)--GUCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CNNNNN-- GG-GG-(GNA A)-CCN-UNA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AG-U- 1021 --GG-GAA-- GA-ACCU-UC --GUA-UGU( U----GAAUA -----U---) GCAU-AC-GG 1081 ---------- -------A-C U-GA-CGGU- A-CCA-C-AG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CAG---GUGU G-AAA-UC-C -G-GGG-C(- UN-A)A-CCC -CG-G-AAG- 1321 -AGCA-UUUG A-UAC-UGUG G-AGCUU-GA GUA-----UG G-GA-GAGGN NAG-U|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -YUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA U--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AU-UUG ACA-UC|--- ---------C ---GCGG--- -RR----UUC 1981 -UUA-U--(- GAAA-)-AUA -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCG-CG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-R |-UC--UUC- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GAA-GA-U A-CU-G-CCC --CG(-GU-U AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-UG -UA--CNNAG GGN-A-G-C- GA-UCU-C(G 2881 -CGA)GAGC- ---------- AA-GCCAA-U CCCAA-AAAG -CA-G-UCC- UUAGUUCGGR 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(U. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dsv.sapovo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfovibrio sapovorans str. 1pa3, Lindhorst ATCC 33892 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfovibrio sapovorans str. 1pa3, Lindhorst ATCC 33892 (T). ORGANISM Desulfovibrio sapovorans. REFERENCE 1 AUTHORS Amann,R.I., Stromley,J., Devereux,R., Key,R. and Stahl,D.A. TITLE Molecular and microscopic identification of sulfate-reducing bacteria in multispecies biofilms. JOURNAL Appl. Environ. Microbiol. 58, 614-623 (1992) STANDARD No information REFERENCE 2 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33892 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34402 ATCC 33892 (T) = DSM 2055 isolate_name= 1pa3, Lindhorst BASE COUNT 334 a 292 c 427 g 286 t 3037 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..GAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAU -GAAC-GC-- UGGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUUN-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AAGUAA---- ---|------ AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-GUGGA- UAA--UCU-A C-CRUU---G -AAUU-C-GG 421 -AAU-AA-CA U--------- ------CG-- C(-GAAA-)G -CGGU-G--C UAAUACC-GG 481 AU-RAU---- ---------- -------G-U UG-U--R-UU ---UUC-(-- --------UU 541 CG-------- -)-GGG---A AU-GC----A AC--CAAA-- ---GAAUGC- CUC-UU---- 601 --(------- ---CAUG--- ---)------ -----AA-A| -GCAUU--U- G--UUU---- 661 ----GAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AG- UGA------- -----UG-GG 781 N-AG-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-CA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-UG --)GG-UCGU AAA--GCUC| UGUC-NA-UG 1021 --GG-GAA-- GA-AGUU-GU --GUG-GUU( C----AAACA -----G---) GGCC-AU-GC 1081 ---------- -------A-U U-GA-CGGU- A-CCC-A-UN A-AG--GAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UNAA-GGGN- GCG-UAG-GC -G|-GC-CU- 1261 G-UN-AAG|U CAU---CUGU G-AAA-UU-U CG-GGG-C(- UN-A)A-CCC -CG-G-AGC- 1321 -UGCA-UGUG A-UAC-UGGC A-GGNUU-GA GUA-----UG G-CA-GAGGA AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCRG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 ACC--NA-UA CUGACG-CUG AU-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA U--CA-CU-- -------A|G -GU-GU-UGN -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGC 1741 NG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGAU C|N|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--NA-AG CGGUNG-AGC R-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGCANN 1921 A-CCUUA-CC UGG-GC-UUG AAA-UC|--- ---------U ---GUGG--- -AA----CUU 1981 -GUA-U--(- GAAA-)-GUA -U-GGGG--- NN-------- --NCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CCG-CA-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UNG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GAA-GA-U A-CU-G-CCC --CG(-GU-N NN)-CGG-G- -GNGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AGUC-CU NAU-N-GC-N NNUNU-G-CC -CA--GGGC- 2821 U-NCA-CA-C GUG--CUNCA AUGGU-A-UA -UA--CAAAG GGN-N-N-C- GA-UNC-C(G 2881 -CGA)GGUG- ---------- GA-NCCAA-U CCCAU-NAAG -UA-U-GCC- ACAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MP1991 4376 bp RNA RNA 02-JUL-1998 DEFINITION iron sulfide. ACCESSION No information KEYWORDS No information. SOURCE iron sulfide. ORGANISM iron sulfide. REFERENCE 1 AUTHORS DeLong,E.F., Frankel,R. and Bazylinski,D. TITLE Multiple evolutionary origins of magnetotaxis in bacteria JOURNAL Science 259, 803-806 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06457 library_source= iron sulfide containing magnetotactic bacterium NB: IDENT: related to Dss. group; ~ident env.MP1990 BASE COUNT 344 a 275 c 377 g 289 t 3091 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... ...UACC-GG 481 AU-AUG---- ---------- -------A-U UU-A--U-A- ---UUU-(-- --------UU 541 UA-A------ -)-GGA---- UA-UG----A AU--UAAA-- ---GGUGGU- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAC--C- G--UUU---- 661 ----AAGG-- GUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-GCACC-A A|-GGC-GA- CGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- N-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA GCCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G -C(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-AUAU-AU --UUA-AUA( C----GAAUA -----G---) UAUU-AA-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---AUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-A-AAG- 1321 -UGCA-UUUG A-AAC-UAUA A-GACUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-UAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-AGC --G-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --SS-(UAA- ---C)G-CA- U-AA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------U ---CGGG--- -AA----UCC 1981 -UUU-U--(- GAAA-)-AUU -A-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CCC-GA-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-C- U-AAA-GA-U A-CU-G-CCC --CG(-GU-U AA)-CAG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GN-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-A-UG -CA--CAAAG AGA-A-G-C- GN-CCU-C(G 2881 -CGA)GAGU- ---------- AA-GCCAA-U CUCA--UAAA -CA-U-UCC- CUAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UU-GU-ACCA -GAA-G-UUG 3121 U-GAA-G-CU -AA-CCA... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MP1990 4376 bp RNA RNA 02-JUL-1998 DEFINITION iron sulfide. ACCESSION No information KEYWORDS No information. SOURCE iron sulfide. ORGANISM iron sulfide. REFERENCE 1 AUTHORS DeLong,E.F., Frankel,R. and Bazylinski,D. TITLE Multiple evolutionary origins of magnetotaxis in bacteria JOURNAL Science 259, 803-806 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06458 library_source= iron sulfide containing magnetotactic bacterium NB: IDENT: related to Dss. group; ~ident env.MP1991 BASE COUNT 223 a 154 c 242 g 182 t 3575 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--UCU-A U-CCUU---A -AAUC-G-GG 421 -GAU-AA-CA U--------- ------UG-- C(-GAAA-)G -CGAU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-U UU-A--U-A- ---UUU-(-- --------UU 541 UA-A------ -)-GGA---- UA-UG----A AU--UAAA-- ---GGUGGU- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAC--C- G--UUU---- 661 ----AAGG-- GUG---A-|G UCCGC----- -GU|----AC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-UCACC-A A|-GGC-GA- NGA------- -----UG-GU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGG-AA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA GCCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G -C(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-AUAU-AU --UUA-AUG( C----GAAUA -----G---) UAUU-AA-GU 1081 ---------- -------A-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GU-CU- 1261 U-AU-AAG|U CAG---AUGU G-AAA-UC-C CG-GGN-C(- UC-A)A-CCC -CG-A-AAG- 1321 -UGCA-UUUG A-AAC-UAUA A-GACUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-AGC --G-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A52 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A52.. ACCESSION No information KEYWORDS No information. SOURCE clone A52. ORGANISM clone A52. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08394|g475614 BASE COUNT 124 a 113 c 171 g 100 t 3868 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .).......C AGCA|-GCCA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCC-GU --GCC-GUA( C----AAAUA -----G---) UGCG-GU-GC 1081 ---------- -------G-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GNNG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -UU-GGGC|G UAAA-GAGC- NUG-UAG-GC -G|-GU-CU- 1261 U-CU-AUG|U CAG---GUGU G-AAA-GC-C CU-GGG-C(- UC-A)A-CCC -GG-G-AAG- 1321 -UGCA-CUUG A-AAC-UGGG A-GACUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-AGC --G-GG---- -U-------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-G...(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A34 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A34.. ACCESSION No information KEYWORDS No information. SOURCE clone A34. ORGANISM clone A34. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08389|g475609 BASE COUNT 124 a 112 c 169 g 103 t 3868 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-AA-GU 1021 --GG-GAA-- GA-ACCC-GC --UCC-GUA( C----AAAUA -----G---) UUCG-GG-GC 1081 ---------- -------G-C U-GA-CGGU- A-CCA-C-UG A-AG--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-NNGG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAUUCA -UU-GGGC|G UAAA-GAGC- GNG-UAG-GC -G|-GU-CU- 1261 U-UU-AUG|U CAG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-AAG- 1321 -UGCA-CUUG A-AAC-UGAA A-GACUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-AGC --G-GG---- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCU -UGCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5-EPS 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5 EPSILON_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5 EPSILON_SUBDIVISION. ORGANISM 2.14.5 EPSILON_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.1 HELICOBACTER_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.1 HELICOBACTER_AND_RELATIVES. ORGANISM 2.14.5.1 HELICOBACTER_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.1.1 HLB.PYLORI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.1.1 HLB.PYLORI_SUBGROUP. ORGANISM 2.14.5.1.1 HLB.PYLORI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo34 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPF234. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPF234. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55303 isolate_name= HPF234 BASE COUNT 110 a 78 c 114 g 92 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--NAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HP11638. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HP11638. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55309 isolate_name= HP11638 BASE COUNT 107 a 77 c 112 g 90 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UNA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GN-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGN-NNNNUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCN| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--NAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo40 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPF240. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPF240. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55304 isolate_name= HPF240 BASE COUNT 106 a 76 c 113 g 91 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CN| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-N-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-NNUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCN| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCN-N-NC G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo58 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPC7058. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPC7058. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55307 isolate_name= HPC7058 BASE COUNT 108 a 77 c 113 g 90 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CN| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACN)--G GAG-GC-AG- C-A---GU-A 901 GGG-NNNAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCN| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--NAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyloS8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPS8. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPS8. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55305 isolate_name= HPS8 BASE COUNT 111 a 78 c 115 g 92 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo90 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPC5790. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPC5790. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55308 isolate_name= HPC5790 BASE COUNT 110 a 78 c 115 g 93 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--NAAG ---------C 1141 -UCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo43 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPA5443. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPA5443. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M86748 isolate_name= HPA5443 NB: possible duplicate of Hlb.pylo27? BASE COUNT 88 a 58 c 93 g 70 t 4067 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ......U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUN-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-GG 781 N-AU-C-CG| -G-CNU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCANU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU NAA--CNNN| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUNA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-N-AC G-AA--UUAG ---------C 1141 -UCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyl123 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. MC123. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. MC123. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Eckloff,B.W., Podzorski,R.P., Kline,B.C. and Cockerill,F.R. ,III. TITLE A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori JOURNAL Int. J. Syst. Bacteriol. 44, 320-323 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01328 isolate_name= MC123 BASE COUNT 403 a 326 c 432 g 342 t 2873 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylor6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS ,III. Eckloff,B.W., Podzorski,R.P., Kline,B.C. and Cockerill,F.R. TITLE isolates of Helicobacter pylori A comparison of 16S ribosomal DNA sequences from five JOURNAL Int. J. Syst. Bacteriol. 44, 320-323 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01330 ATCC 43504 (T) = RPH 13487 = JCM 7653 = NCTC 11637 BASE COUNT 401 a 325 c 434 g 343 t 2873 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylori 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst,F.E., Krakowa,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88157 ATCC 43504 (T) = RPH 13487 = JCM 7653 = NCTC 11637 BASE COUNT 386 a 310 c 418 g 330 t 2932 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-UAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-N-GU-GGU -UUAAUU-CG -(ANNNNA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyl238 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. MC238. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. MC238. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Eckloff,B.W., Podzorski,R.P., Kline,B.C. and Cockerill,F.R. ,III. TITLE A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori JOURNAL Int. J. Syst. Bacteriol. 44, 320-323 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01329 isolate_name= MC238 BASE COUNT 402 a 326 c 434 g 340 t 2874 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAA- GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CG-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. 5443. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. 5443. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G .J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92322 (bases 1 to 267) Former RDP Sids: Cam.pylor2 isolate_name= 5443 NB: possible duplicate of Hlb.pylo43? former name Campylobacter pylori BASE COUNT 237 a 187 c 254 g 212 t 3486 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUS-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----NAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-GG 781 N-AU-C-CG| -G-CMU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UMM -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCNAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCNA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU NAA--CNNN| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUNA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-N-AC GAAU--UAAG ---------C 1141 -UCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. ..G---GUGU G-AA--U--C UA-UG--C(- UN--)---CA -UA-G-AAC- 1321 -UG-N-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGNA 1381 UU-CUUGGU- GUA-GGG(-G NNAAA)-UCC -GU-AGAG-A UC-NGCAGG- AAUN-CUCN- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------A 1501 ACA--UU-AC CUGACG-CUG AUUG------ -------C-- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGG A--UN-CU-- -------N|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCAUC C|N|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .........U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUN|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-A-GCC --UC(-C--U AA)-GGA-G- -GAGG-A-AG 2761 G-UA-GGG-A CG-ACG--UC -A-AGUC-AU CNNUG-GC-C CUUAC---CC -UA--GGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -NGCCAU)-G UUG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyl903 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. MC903. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. MC903. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Eckloff,B.W., Podzorski,R.P., Kline,B.C. and Cockerill,F.R. ,III. TITLE A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori JOURNAL Int. J. Syst. Bacteriol. 44, 320-323 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01332 isolate_name= MC903 BASE COUNT 401 a 326 c 434 g 342 t 2873 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GUCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylD01 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. D01. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. D01. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Handt,L.K., Fox,J.G., Dewhirst,F.E., Fraser,G.J., Paster,B.J ., Yan,L.L., Rozmiarek,H., Rufo,R. and Stalis,I.H. TITLE Helicobacter pylori isolated from the domestic cat: public health implications JOURNAL Infect. Immun. 62, 2367-2374 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08906|g476342 nat_host= Felis domesticus isolate_name= D01 BASE COUNT 377 a 308 c 410 g 314 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCN-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-N -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-NNC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AU. 3001 .......(.. .......).. ..G-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyl937 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. MC937. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. MC937. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Eckloff,B.W., Podzorski,R.P., Kline,B.C. and Cockerill,F.R. ,III. TITLE A comparison of 16S ribosomal DNA sequences from five isolates of Helicobacter pylori JOURNAL Int. J. Syst. Bacteriol. 44, 320-323 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U01331 isolate_name= MC937 BASE COUNT 402 a 328 c 433 g 340 t 2873 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-AG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(UGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylor3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25742 BASE COUNT 394 a 316 c 419 g 325 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------CU 541 AC-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylSH2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. SH2. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. SH2. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25736 isolate_name= SH2 BASE COUNT 245 a 204 c 255 g 206 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------UUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylor4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25743 BASE COUNT 245 a 206 c 255 g 204 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. MC19. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. MC19. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25748 isolate_name= MC19 BASE COUNT 245 a 206 c 255 g 204 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyloL2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. L2. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. L2. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25739 isolate_name= L2 BASE COUNT 245 a 205 c 255 g 205 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylSH4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. SH4. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. SH4. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25738 isolate_name= SH4 BASE COUNT 246 a 205 c 254 g 205 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAG -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylSH3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. SH3. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. SH3. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25737 isolate_name= SH3 BASE COUNT 246 a 205 c 254 g 205 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAG -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25741 NCTC 11637 = RPH 13487 = JCM 7653 = ATCC 43504 (T) BASE COUNT 394 a 314 c 419 g 327 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UCA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 C--------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylL13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. L13. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. L13. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25740 isolate_name= L13 BASE COUNT 246 a 203 c 254 g 207 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylor5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25744 BASE COUNT 246 a 203 c 254 g 207 t 3466 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyrrnA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. 26695 [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. 26695 [gene=rrnA gene]. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Tomb,J.-F., White,O., Kerlavage,A.R., Clayton,R.A., Sutton,G .G., Fleischmann,R.D., Ketchum,K.A., Klenk,H.P., Gill,S., Dougherty,B.A., Nelson,K., Quackenbush,J., Zhou,L., Kirkness ,E.F., Peterson,S., Loftus,B., Richardson,D., Dodson,R., Khalak,H.G., Glodek,A., McKenney,K., Fitzegerald,L.M., Lee,N ., Adams,M.D., Hickey,E.K., Berg,D.E., Gocayne,J.D., Utterback,T.R., Peterson,J.D., Kelley,J.M., Cotton,M.D., Weidman,J.M., Fujii,C., Bowman,C., Watthey,L., Wallin,E., Hayes,W.S., Borodovsky,M., Karp,P.D., Smith,H.O., Fraser,C.M. and Venter,J.C. TITLE The complete genome sequence of the gastric pathogen Helicobacter pylori JOURNAL Nature 388 (6642), 539-547 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000511 (bases 1207583 to 1209081) complement operon= rrnA gene isolate_name= 26695 BASE COUNT 395 a 321 c 434 g 344 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-YAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAWWA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G WA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)- ---------- ---------- ---------- -------UUU -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAA-UC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG KGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC UGCGGU--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pyrrnB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. 26695 [gene=rrnB gene]. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. 26695 [gene=rrnB gene]. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Tomb,J.-F., White,O., Kerlavage,A.R., Clayton,R.A., Sutton,G .G., Fleischmann,R.D., Ketchum,K.A., Klenk,H.P., Gill,S., Dougherty,B.A., Nelson,K., Quackenbush,J., Zhou,L., Kirkness ,E.F., Peterson,S., Loftus,B., Richardson,D., Dodson,R., Khalak,H.G., Glodek,A., McKenney,K., Fitzegerald,L.M., Lee,N ., Adams,M.D., Hickey,E.K., Berg,D.E., Gocayne,J.D., Utterback,T.R., Peterson,J.D., Kelley,J.M., Cotton,M.D., Weidman,J.M., Fujii,C., Bowman,C., Watthey,L., Wallin,E., Hayes,W.S., Borodovsky,M., Karp,P.D., Smith,H.O., Fraser,C.M. and Venter,J.C. TITLE The complete genome sequence of the gastric pathogen Helicobacter pylori JOURNAL Nature 388 (6642), 539-547 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AE000511 (bases 1511137 to 1512634) complement operon= rrnB gene isolate_name= 26695 BASE COUNT 399 a 323 c 431 g 343 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- MU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GG--G- -NAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)A-UG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC UGCGGU--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylD08 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. 85D08 ATCC 51407. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. 85D08 ATCC 51407. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Drazek,E.S., Dubois,A. and Holmes,R.K. TITLE Characterization and presumptive identification of Helicobacter pylori isolates from Rhesus monkeys JOURNAL J. Clin. Microbiol. 32, 1799-1804 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51407 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00679|g392938 (bases 149 to 1650) isolate_name= 85D08 BASE COUNT 402 a 327 c 432 g 341 t 2874 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAU GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGACA)CC UGCGGU--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pylo55 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pylori str. HPF155. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pylori str. HPF155. ORGANISM Helicobacter pylori. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55306 isolate_name= HPF155 BASE COUNT 111 a 77 c 116 g 92 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GC-UUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGC- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.nemstr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter nemestrinae str. T81213-NTB ATCC 49396 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter nemestrinae str. T81213-NTB ATCC 49396 (T). ORGANISM Helicobacter nemestrinae. REFERENCE 1 AUTHORS Sly,L.I., Bronsdon,M.A., Bowman,J.P., Holmes,A. and Stackebrandt,E. TITLE The phylogenetic position of Helicobacter nemestrinae JOURNAL Int. J. Syst. Bacteriol. 43, 386-387 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49396 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67854|g534956 legacy_attribute= gastric mucosa of pigtailed macaque, Macaca nemestrina isolate_name= T81213-NTB BASE COUNT 397 a 312 c 421 g 328 t 2918 others ORIGIN 1 .......... .......... .......... ...NNUAUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAAA CUC------- ---------- ---------- ---------- 181 ---------- ---------- -----UA-AG (--CU----- ---------- ---------- 241 --------UG -)CA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CUG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U UAGU---AAC -GC-AUAGG- UAA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUA-G--A UAAUACC-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----GAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-CAG|U CAG---GUGU G-AAA-UC-C UA-UUG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GAG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AUUG------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CUC -UCCAG-UAA 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGGUA-C N)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAA------ ----AU---| CCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-CAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---GC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-U A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -NA--CAAAG AGA-C-G-C- AA-UNC-G(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUUA--AAAA -CA-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AUA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UAG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AC-G-U A-CU-GC-CC A-CCGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.aci908 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter acinonyx str. Eaton 90-1908-3 ATCC 51104. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter acinonyx str. Eaton 90-1908-3 ATCC 51104. ORGANISM Helicobacter acinonyx. REFERENCE 1 AUTHORS Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst,F.E., Krakowa,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51104 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88149 isolate_name= Eaton 90-1908-3 BASE COUNT 360 a 311 c 417 g 315 t 2973 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GGUG-A--U UAAUACC-AG 481 AU-AUU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUNU----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 N-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C NCG)--GUCC -AGA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-NAUNUU G-CUCAAU-- GG-GS-(GCA A)-SCC-UGN AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GA-GAA-- G--------- ---------( ------AUNA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-G-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-NGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UNAA-GAGY- GCG-UAG-GC -G|-GG-RU- 1261 W-GU-MAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-N)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-URCW A-YUCUN-GA GUG-----UG G-GA-GAGGY AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUN-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUR-- ---------- ---------- ---------G 1501 AAC--AW-UA CUGACG-CUG AUUG------ -------CR- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -RG-GG---- ---------- 1681 -(CUU-NG)U ---------- ---------- ---------- -------CCY -YCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAUAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AARG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CYU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AWG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU NNU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- GA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-AG-C-U A-CU-GC-CC A-CGGC-NCN CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.acinyx 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter acinonyx str. Eaton 90-119-3 CCUG 29263. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter acinonyx str. Eaton 90-119-3 CCUG 29263. ORGANISM Helicobacter acinonyx. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter isolates from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information REFERENCE 2 AUTHORS Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst, F.E., Krakowa,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88148 Former RDP Sids: Hlb.aci119 CCUG 29263 = ATCC 51101 (T) isolate_name= Eaton 90-119-3 BASE COUNT 372 a 310 c 419 g 315 t 2960 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CUCU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GGUG-A--U UAAUACC-AG 481 AU-AUU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AGAG-- AUC---A-|G CCUAU----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GS-(GCA A)-SCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-G-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGY- GCG-UAG-GC -G|-GG-RU- 1261 W-GU-MAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-N)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-URCW A-YUCUG-GA GUG-----UG G-GA-GAGGY AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUR-- ---------- ---------- ---------G 1501 AAC--AW-UA CUGACG-CUG AUUG------ -------CR- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -RG-GG---- ---------- 1681 -(CUU-UG)U ---------- ---------- ---------- -------CYY -YCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AARG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CYU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UC ---AWG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCU --CC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- GA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUUC--AAAA -CA-C-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gas.homin1 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Gastrospirillum hominis" str. clone G1A1. ACCESSION No information KEYWORDS No information. SOURCE "Gastrospirillum hominis" str. clone G1A1. ORGANISM "Gastrospirillum hominis". REFERENCE 1 AUTHORS Solnick,J.V., O'Rourke,J., Lee,A., Paster,B.J., Dewhirst,F.E. and Tompkins,L.S. TITLE An uncultured gastric spiral organism is a newly identified Helicobacter in humans JOURNAL J. Infect. Dis. 168, 379-385 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10079 isolate_name= clone G1A1;isolate 1 BASE COUNT 385 a 301 c 405 g 319 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----G----- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGA- UGA--CAU-G C-CCUU---U -AGUU-U-GG 421 -AAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-A--U UAAUACC-AA 481 AU-ACUA--- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCU-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-AG- 1261 G-AC-AAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU C-UUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-CA CUGACG-CUG AUUG------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GN-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -AG-GC---- ---------- 1681 -(UUU-GU)- ---------- ---------- ---------- -------CUU -UCCAG-UAA 1741 UG--CA---- --CG-(UAA- ---C)G-CC- UUAA-NNAU- C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AAGG--- -AA----UUC 1981 -CCU-A--(- GAAA-)-UAG -G-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|C 2701 G-CA-CU-C- U-AAG-AA-G A-CU-G-CCU --GC(-G--U AA)-N..... ..AGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-U-G-C- AA-AGC-C(G 2881 -CGA)GGCA- ---------- GA-GCUAA-U CUAU--AAAA -CA-C-CUC- CUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gas.homin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Gastrospirillum hominis" str. 2. ACCESSION No information KEYWORDS No information. SOURCE "Gastrospirillum hominis" str. 2. ORGANISM "Gastrospirillum hominis". REFERENCE 1 AUTHORS Solnick,J.V., O'Rourke,J., Lee,A., Paster,B.J., Dewhirst,F.E. and Tompkins,L.S. TITLE An uncultured gastric spiral organism is a newly identified Helicobacter in humans JOURNAL J. Infect. Dis. 168, 379-385 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10080 isolate_name= 2 BASE COUNT 381 a 311 c 412 g 311 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGA- UGA--CAU-G C-CCUU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-A--U UAAUACC-AA 481 AU-AUUA--- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GCA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-GA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-C-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 U-GU-AAG|U CAG---GUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCA A-CCCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AA-UA CUGACG-CUG AUUG------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -GG-GG---- ---------- 1681 -(CUU-UG)U ---------- ---------- ---------- -------CCU -CCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AAGG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CU-CU-C- U-AAG-AA-G A-CU-G-CCU --GC(-G--U AA)-GCA-N- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-N-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-U-G-C- AA-UGC-C(G 2881 -CGA)NNNN- ---------- GA-GCCAA-U CUUA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.felCS1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter felis str. CS1 ATCC 49179 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter felis str. CS1 ATCC 49179 (T). ORGANISM Helicobacter felis. REFERENCE 1 AUTHORS Paster,B.J., Lee,A., Fox,J.G., Dewhirst,F.E., Tordoff,L.A., Fraser,G.J., O'Rourke,J.L., Taylor,N.S. and Ferrero,R. TITLE The phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria JOURNAL Int. J. Syst. Bacteriol. 41, 31-38 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49179 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M57398 isolate_name= CS1 BASE COUNT 371 a 309 c 416 g 317 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGA- UGA--CAU-G C-CCUU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-A--U UAAUACC-AA 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GCA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-G-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A NCUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCN -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACA A-CUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AA-UA CUGACG-CUG AU-G------ -------CN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGG -GG-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -CCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG C......... ....GU-GGU -UUAAUU-CG -(A....... .)..CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AANG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CU-CU-C- U-AAG-AA-U A-CU-G-CCU --GC(-G--U AA)-GCA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-U-G-C- AA-UGC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-U CUUA--AAAA -CN-N-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AGG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.felDS3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter felis str. DS3. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter felis str. DS3. ORGANISM Helicobacter felis. REFERENCE 1 AUTHORS Paster,B.J., Lee,A., Fox,J.G., Dewhirst,F.E., Tordoff,L.A., Fraser,G.J., O'Rourke,J.L., Taylor,N.S. and Ferrero,R. TITLE The phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria JOURNAL Int. J. Syst. Bacteriol. 41, 31-38 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37643 isolate_name= DS3 BASE COUNT 380 a 313 c 419 g 320 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.CUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGA- UAA--CAU-G C-CCUU---U -AGUU-U-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-A--U UAAUACC-AA 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GCA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-CA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-G-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACA A-CUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AA-UA CUGACG-CUG AU-G------ -------CR- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------M|G -UU-GU-UGG -GG-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -CCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CC- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-N-GU-GGU -UUAAUU-CG -(ANNNNA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AAGG--- -AA----UCC 1981 -CCU-A--(- GAAA-)-UAG -G-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UU--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CU-CU-C- U-AAG-AA-U A-CU-G-CCU --GC(-G--U AA)-GCA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-U-G-C- AA-UGC-C(G 2881 -CGA)GGCU- ---------- GA-GCCAA-U CUUA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- GU-UU-GCCU -UAA-G-UCA 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CU-GC-CC A-CGGC-ACA CAC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.spCLO3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. CLO 3 CCUG 14564. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. CLO 3 CCUG 14564. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Dewhirst,F.E. and Paster,B.J. TITLE Helicobacter mustelae isolation from feces of ferrets: Evidence to support fecal-oral transmission of a gastric helicobacter JOURNAL Infect. Immun. 60, 606-611 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88151 isolate_name= CLO 3 BASE COUNT 367 a 302 c 418 g 318 t 2971 others ORIGIN 1 .......... .......... .......... ...ACUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGA- UAA--CAU-G C-CUCA---U -AGUC-U-GG 421 -GAU-AG-CC N--------- ------NN-- N(-GAAA-)C -GGUG-A--U UAAUAC.... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....UA--- ---)------ ---------| --------C- G--CUA---- 661 ----UGAG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AA- 1261 G-CU-AAG|U CAG---AUGU G-AAA-UC-C UG-UGG-C(- UU-A)A-CUG -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC Y-YUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-UG)U ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-N-GU-GGU -UUAAUU-CG -(ANNNNA-C A)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U RA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -CA--CAAAG AGA-A-G-C- AA-UAG-C(G 2881 -UGA)GCUG- ---------- GA-GCCAA-U CUCU--AAAA -CG-C-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp.52D 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. Seymour B52 (T) CCUG 29561. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. Seymour B52 (T) CCUG 29561. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88144 CCUG 29561 = ATCC 51482 legacy_attribute= biovar:Bird-C isolate_name= Seymour B52 (T) BASE COUNT 378 a 305 c 423 g 329 t 2941 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU A-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp.10B 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. Seymour 10B (T) CCUG 29256 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. Seymour 10B (T) CCUG 29256 (T). ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88139 CCUG 29256 (T) = ATCC 51480 legacy_attribute= biovar:Bird-B isolate_name= Seymour 10B (T) BASE COUNT 381 a 305 c 422 g 328 t 2940 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUNUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU A-CUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AC-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCUAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp.B8A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. Seymour B8 CCUG 29254. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. Seymour B8 CCUG 29254. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88146 CCUG 29254 = ATCC 51481 legacy_attribute= biovar:Bird-B isolate_name= Seymour B8 BASE COUNT 379 a 304 c 421 g 329 t 2943 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AC-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U N-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCUAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.mus198 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 (T). ORGANISM Helicobacter mustelae. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12198 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55310 NCTC 12198 (T) = ATCC 43772 isolate_name= Fox R85-13-6 BASE COUNT 104 a 77 c 121 g 92 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CCNA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.musE1A 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter mustelae str. 91-292-E1A Fox. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter mustelae str. 91-292-E1A Fox. ORGANISM Helicobacter mustelae. REFERENCE 1 AUTHORS Fox,J.G., Paster,B.J., Dewhirst,F.E., Taylor,N.S., Yan,L.-L., Macuch,P.J. and Chmura,L.M. TITLE Helicobacter mustelae isolation from feces of ferrets: Evidence to support fecal-oral transmission of a gastric helicobacter JOURNAL Infect. Immun. 60, 606-611 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88156 isolate_name= 91-292-E1A Fox BASE COUNT 380 a 303 c 421 g 331 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GA-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-AA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-YG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.muste2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter mustelae str. Fox R85-13-6 NCTC 12198 (T). ORGANISM Helicobacter mustelae. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12198 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25747 NCTC 12198 (T) = ATCC 43772 isolate_name= Fox R85-13-6 BASE COUNT 244 a 200 c 254 g 210 t 3468 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-AA-G A-CU-G-CCU --UC(-CG-U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.mustel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter mustelae str. Fox R85-13-6 ATCC 43772. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter mustelae str. Fox R85-13-6 ATCC 43772. ORGANISM Helicobacter mustelae. REFERENCE 1 AUTHORS Paster,B.J., Lee,A., Fox,J.G., Dewhirst,F.E., Tordoff,L.A., Fraser,G.J., O'Rourke,J.L., Taylor,N.S. and Ferrero,R. TITLE The phylogeny of Helicobacter felis sp. nov., Helicobacter mustelae, and related bacteria JOURNAL Int. J. Syst. Bacteriol. 41, 31-38 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43772 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35048 ATCC 43772 = NCTC 12198 (T) isolate_name= Fox R85-13-6 BASE COUNT 375 a 301 c 412 g 326 t 2962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.AUUAUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GNAA-- ---AG----- ---------- 601 --(------- ---NUNU--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(N -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCN-N ACUCC-GUG( CCA--GCAGC CGCGGNA-N) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UNAA-GAGC- GCG-UAG-GC -G|-GA-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAAA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-AA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-NGGC-GGA UNC....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp.266 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. 91-266-11 Fox. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. 91-266-11 Fox. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Fox,J.G., Paster,B.J., Dewhirst,F.E., Taylor,N.S., Yan,L.-L., Macuch,P.J. and Chmura,L.M. TITLE Helicobacter mustelae isolation from feces of ferrets: Evidence to support fecal-oral transmission of a gastric helicobacter JOURNAL Infect. Immun. 60, 606-611 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88152 isolate_name= 91-266-11 Fox BASE COUNT 381 a 302 c 422 g 331 t 2940 others ORIGIN 1 .......... .......... .......... ...AUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-AG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GCUA-N C-GC----CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp.269 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp. str. 91-269-21 Fox. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. str. 91-269-21 Fox. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Dewhirst,F.E. and Paster,B.J. TITLE Helicobacter mustelae isolation from feces of ferrets: Evidence to support fecal-oral transmission of a gastric helicobacter JOURNAL Infect. Immun. 60, 606-611 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88153 isolate_name= 91-269-21 Fox BASE COUNT 369 a 301 c 420 g 325 t 2961 others ORIGIN 1 .......... .......... .......... .......UGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------NAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-AG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UNNUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UNA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-N)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUN-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------N|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAC -UCCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCN CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUNC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-G--C-U A-NC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamten 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour B9 (T) CCUG 29255 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour B9 (T) CCUG 29255 (T). ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88147 Former RDP Sids: Hlb.sp.B9A CCUG 29255 (T) = ATCC 51478 isolate_name= Seymour B9 (T) NB: former name Helicobacter sp. BASE COUNT 377 a 310 c 426 g 325 t 2938 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAN-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -UA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamte2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour B7 CCUG 29253. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour B7 CCUG 29253. ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88145 Former RDP Sids: Hlb.sp.B7B isolate_name= Seymour B7 NB: former name Helicobacter sp. BASE COUNT 375 a 311 c 425 g 323 t 2942 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-NNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamte5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour B15 CCUG 29259. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour B15 CCUG 29259. ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88142 Former RDP Sids: Hlb.sp.15A isolate_name= Seymour B15 NB: former name Helicobacter sp. BASE COUNT 378 a 310 c 427 g 324 t 2937 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UNUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA A--UG-CU-- -------N|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U RA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamte3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour B12 CCUG 29257. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour B12 CCUG 29257. ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88140 Former RDP Sids: Hlb.sp.12A CCUG 29257 = ATCC 51479 isolate_name= Seymour B12 NB: former name Helicobacter sp. BASE COUNT 377 a 308 c 426 g 324 t 2941 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--UU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNNA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--Y NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamte4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour B13 CCUG 29258. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour B13 CCUG 29258. ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fox ,J.G. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88141 Former RDP Sids: Hlb.sp.13A isolate_name= Seymour B13 NB: former name Helicobacter sp. BASE COUNT 378 a 309 c 427 g 322 t 2940 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA A--UG-CU-- -------N|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUN-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UNAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU NAU-G-GC-C CUUAN-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pamte6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pametensis str. Seymour M17 CCUG 29260. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pametensis str. Seymour M17 CCUG 29260. ORGANISM Helicobacter pametensis. REFERENCE 1 AUTHORS Dewhirst,F.E., Seymour,C., Fraser,G.J., Paster,B.J. and Fraser,G.J. TITLE Phylogeny of Helicobacter species isolated from bird and swine feces and description of Helicobacter pametensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 553-560 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88155 Former RDP Sids: Hlb.sp.M17 isolate_name= Seymour M17 NB: former name Helicobacter sp. BASE COUNT 375 a 311 c 426 g 325 t 2939 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- GCUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GG-AG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CUC -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UG -CA--CAAAG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36142|g536831 biol_source= chicken BASE COUNT 380 a 304 c 415 g 325 t 2952 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UAA--CAU-G C-CCCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGGG-- AUU---G-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36141|g536830 biol_source= chicken BASE COUNT 380 a 304 c 415 g 325 t 2952 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UAA--CAU-G C-CCCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGGG-- AUU---G-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36144|g536833 biol_source= human BASE COUNT 380 a 304 c 415 g 325 t 2952 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UAA--CAU-G C-CCCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGGG-- AUU---G-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36143|g536832 biol_source= human BASE COUNT 379 a 302 c 414 g 329 t 2952 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum str. UB151. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum str. UB151. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36145|g536834 biol_source= chicken isolate_name= UB151 BASE COUNT 394 a 309 c 415 g 333 t 2925 others ORIGIN 1 .......... ....CGCAAA AUAAAUACUA UCCAUAAAAC CGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-------CC A-CGGC-GGA UGC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum str. UB3659. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum str. UB3659. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36147|g536836 biol_source= human isolate_name= UB3659 BASE COUNT 381 a 304 c 416 g 328 t 2947 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-CG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.pullr6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter pullorum str. UB3166. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter pullorum str. UB3166. ORGANISM Helicobacter pullorum. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., On,S.L.W ., Porter,A., Owen,R.J. and Costas,M. TITLE Helicobacter pullorum sp. nov. - genotype and phenotype of a new species isolated from poultry and from human patients with gastroenteritis JOURNAL Microbiology 140, 3441-3449 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36146|g536835 biol_source= human isolate_name= UB3166 BASE COUNT 381 a 304 c 416 g 328 t 2947 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU A-CUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCCAA-U CUCU--AAAA -CA-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-NN-NN-CC A-CGGC-GGA UGC-AG-CG- ACU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.hepat4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter hepaticus str. Fox Hh-2 ATCC 51448 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter hepaticus str. Fox Hh-2 ATCC 51448 (T). ORGANISM Helicobacter hepaticus. REFERENCE 1 AUTHORS Fox,J.G., Dewhirst,F.E., Tully,J.G., Paster,B.J., Yan,L., Taylor,N.S., Collins,M.J., Gorelick,P.L. and Ward,J.M. TITLE Helicobacter hepaticus sp. nov., a microaerophilic bacterium isolated from liver and intestinal mucosal scrapings from mice JOURNAL J. Clin. Microbiol. 32, 1238-1245 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51448 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07574|g476301 nat_host= Mus musculus isolate_name= Fox Hh-2 BASE COUNT 300 a 233 c 343 g 266 t 3234 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CC........ .........) ....C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-CUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGC -CU-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -ACU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 ....AA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGNC-GNA UGC-AG-CG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.hepat3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter hepaticus str. Fox Hh-3 ATCC 51450. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter hepaticus str. Fox Hh-3 ATCC 51450. ORGANISM Helicobacter hepaticus. REFERENCE 1 AUTHORS Fox,J.G., Dewhirst,F.E., Tully,J.G., Paster,B.J., Yan,L., Taylor,N.S., Collins,M.J., Gorelick,P.L. and Ward,J.M. TITLE Helicobacter hepaticus sp. nov., a microaerophilic bacterium isolated from liver and intestinal mucosal scrapings from mice JOURNAL J. Clin. Microbiol. 32, 1238-1245 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51450 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07575|g476302 nat_host= Mus musculus isolate_name= Fox Hh-3 BASE COUNT 302 a 235 c 340 g 263 t 3236 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-CUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGC -CU-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -ACU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-U(-AA. .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .....A-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGNN-NNA UGC-AG-CG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.hepat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter hepaticus str. Fox Hh-1 ATCC 51449. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter hepaticus str. Fox Hh-1 ATCC 51449. ORGANISM Helicobacter hepaticus. REFERENCE 1 AUTHORS Fox,J.G., Dewhirst,F.E., Tully,J.G., Paster,B.J., Yan,L., Taylor,N.S., Collins,M.J., Gorelick,P.L. and Ward,J.M. TITLE Helicobacter hepaticus sp. nov., a microaerophilic bacterium isolated from liver and intestinal mucosal scrapings from mice JOURNAL J. Clin. Microbiol. 32, 1238-1245 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51449 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U07573|g476300 nat_host= Mus musculus isolate_name= Fox Hh-1 BASE COUNT 321 a 270 c 367 g 279 t 3139 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ...CAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AG....... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... ........GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA.... ...(.....G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGC -CU-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -ACU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -CA--CAAAG AGG-A-G-C- AA-UAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.hepat5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter hepaticus str. FRED1. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter hepaticus str. FRED1. ORGANISM Helicobacter hepaticus. REFERENCE 1 AUTHORS Battles,J.K., Williamson,J.C., Pike,K.M., Gorelick,P.L., Ward,J.M. and Gonda,M.A. TITLE Diagnostic assay for Helicobacter hepaticus based on nucleotide sequence of its 16S rRNA gene JOURNAL J. Clin. Microbiol. 33 (5), 1344-1347 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39122|g777732 isolate_name= FRED1 BASE COUNT 384 a 311 c 432 g 330 t 2919 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-CUCUG-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -UU-GU-UGC -CU-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -ACU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -CA--CAAAG AGG-A-G-C- AA-UAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.murida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter muridarum str. ST1 ATCC 49282 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter muridarum str. ST1 ATCC 49282 (T). ORGANISM Helicobacter muridarum. REFERENCE 1 AUTHORS Lee,A., Phillips,M.W., O'Rourke,J.L., Paster,B.J., Dewhirst ,F.E., Fraser,G.J., Fox,J.G., Sly,L.I., Romaniuk,R.J., Trust ,T.J. and Kouprach,S. TITLE Helicobacter muridarum, sp. nov., a microaerophilic spiral bacterium with anovel ultrastructure isolated from the intestinal mucosa of the rodent JOURNAL Int. J. Syst. Bacteriol. 42, 27-36 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49282 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80205 ATCC 49282 (T) = CCUG 29262 isolate_name= ST1 BASE COUNT 377 a 301 c 422 g 329 t 2947 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~....AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-GA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-C-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GG-CU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UA-UAG-C(- UU-A)A-CUA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UAUU A-GUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CU-UG---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNNA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- -CCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C U-)------- GUGG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---U(---UU ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGG-A-G-C- AA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -CG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CN-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.trogon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter trogontum str. LRB 8581. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter trogontum str. LRB 8581. ORGANISM Helicobacter trogontum. REFERENCE 1 AUTHORS Mendes,E.N., Queiroz,D.M., Dewhirst,F.E., Paster,B.J., Moura ,S.B. and Fox,J.G. TITLE Helicobacter trogontum sp. nov., isolated from the rat intestine JOURNAL Int. J. Syst. Bacteriol. 46 (4), 916-921 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65103|g1513134 isolate_name= LRB 8581 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 377 a 306 c 422 g 317 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UAA--CAU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUU---G-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-GU- 1261 A-AU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGUU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CCCUUC--- --(GGG---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---G------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -CA--CAAAG AGG-A-G-C- AA-UAU-C(G 2881 -UGA)GAUG- ---------- GA-GCAAA-U CUCA--AAAA -CG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-AAU-G-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.fennel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter fennelliae. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter fennelliae. ORGANISM Helicobacter fennelliae. REFERENCE 1 AUTHORS Dewhirst,F.E. and Paster,B.J. TITLE Helicobacter mustelae isolation from feces of ferrets: Evidence to support fecal-oral transmission of a gastric helicobacter JOURNAL Infect. Immun. 60, 606-611 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88154 Former RDP Sids: Hlb.fen820 CCUG 18820 = LMG 7546 (T) = ATCC 35684 NB: former name Helicobacter fennelliae BASE COUNT 375 a 305 c 412 g 311 t 2973 others ORIGIN 1 .......... .......... .......... ...UUUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUCUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGA- UAA--CAU-G C-CCUU---U -AGUC-U-AG 421 -GAU-A.... .......... .........- .(.GAAA-)C -GGUG-A--U UAAUAC.... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ...CUC--C- G--CUA---- 661 ----AAGG-- AUU---G-|G UCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GG-AU- 1261 A-GC-AAG|U CAG---AUGU G-AAA-UG-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU N-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GNGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGU-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--C AN)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UG -CA--CAAAG AGA-A-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUCC--AAAA -CG-C-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCC -UAA-G-CCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.Mainz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Husmann,M., Gries,C., Jehnichen,P., Woelfel,T., Gerken,G., Ludwig,W. and Bhakdi,S. TITLE Helicobacter sp. strain Mainz isolated from an AIDS patient with septic arthritis: case report and nonradioactive analysis of 16S rRNA sequence JOURNAL J. Clin. Microbiol. 32 (12), 3037-3039 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81028|g899267 BASE COUNT 385 a 307 c 421 g 325 t 2938 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-AUAGG- UAA--UAU-G C-CCCA---U -AGUC-U-AG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CC--(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUU---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGU- GCG-CAG-GC -G|-GG-AU- 1261 A-GC-AAG|U CAG---AUGU G-AAA-UG-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCU A-UUCUA-GA GUG-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUU AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAAC A--C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUU -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- -CUGG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |-U-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UU -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CA -CA--CAAAG AGA-A-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUCC--AAAA -CG-C-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U U-UA-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.cinaed 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter cinaedi. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter cinaedi. ORGANISM Helicobacter cinaedi. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88150 CCUG 18818 = LMG 7543 = ATCC 35683 (T) BASE COUNT 382 a 301 c 421 g 332 t 2940 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UNAA-GAGU- GCG-UAG-GC -G|-GG-UA- 1261 G-UC-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAC U-AUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------N|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-NU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGUAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -UUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UNCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-NC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fxs.rappi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexispira rappini. ACCESSION No information KEYWORDS No information. SOURCE Flexispira rappini. ORGANISM Flexispira rappini. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25746 BASE COUNT 243 a 204 c 257 g 202 t 3470 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAC C-AUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fxs.rappi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexispira rappini. ACCESSION No information KEYWORDS No information. SOURCE Flexispira rappini. ORGANISM Flexispira rappini. REFERENCE 1 AUTHORS Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst,F.E., Krakowa,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88138 BASE COUNT 373 a 305 c 420 g 322 t 2956 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UN- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-UG- 1261 G-UC-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAC C-AUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-KAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG .......... ....GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUN- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-NN-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fxs.rappin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexispira rappini str. 2011. ACCESSION No information KEYWORDS No information. SOURCE Flexispira rappini str. 2011. ORGANISM Flexispira rappini. REFERENCE 1 AUTHORS Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst,F.E., Krakowa,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88137 NADC 1893 (T) = ATCC 49313 = ATCC 43966 geog_source= South Dakota biol_source= aborted sheep fetus, liver and fluids isolate_name= 2011; SDSU 84-3345 BASE COUNT 262 a 193 c 292 g 216 t 3413 others ORIGIN 1 .......... .......... .......... ......AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---C-C-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-UA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-UG- 1261 G-UC-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAC C-AUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- G....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fxs.rappi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flexispira rappini str. DBS59. ACCESSION No information KEYWORDS No information. SOURCE Flexispira rappini str. DBS59. ORGANISM Flexispira rappini. REFERENCE 1 AUTHORS Schauer,D.B., Ghori,N. and Falkow,S. TITLE Isolation and characterization of 'Flexispira rappini from laboratory mice JOURNAL J. Clin. Microbiol. 31, 2709-2714 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L12765 isolate_name= DBS59 BASE COUNT 262 a 213 c 277 g 215 t 3409 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... ........AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-UG- 1261 G-UC-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UGAC C-AUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-AU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.bilis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter bilis str. Hb2 ATCC 51631. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter bilis str. Hb2 ATCC 51631. ORGANISM Helicobacter bilis. REFERENCE 1 AUTHORS Fox,J.G., Yan,L.L., Dewhirst,F.E., Paster,B.J., Shames,B., Murphy,J.C., Hayward,A., Belcher,J.C. and Mendes,E.N. TITLE Helicobacter bilis sp. nov., a novel Helicobacter isolated from bile, liver and intestine of aged, inbred mouse strains JOURNAL J. Clin. Microbiol. 33, 445-454 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51631 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18767|g624262 (bases 375 to 1617) isolate_name= Hb2 BASE COUNT 381 a 306 c 420 g 323 t 2946 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AG- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU U-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.bilis3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter bilis str. Hb3 ATCC 51632. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter bilis str. Hb3 ATCC 51632. ORGANISM Helicobacter bilis. REFERENCE 1 AUTHORS Fox,J.G., Yan,L.L., Dewhirst,F.E., Paster,B.J., Shames,B., Murphy,J.C., Hayward,A., Belcher,J.C. and Mendes,E.N. TITLE Helicobacter bilis sp. nov., a novel Helicobacter isolated from bile, liver and intestine of aged, inbred mouse strains JOURNAL J. Clin. Microbiol. 33, 445-454 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51632 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18768|g624263 (bases 356 to 1598) isolate_name= Hb3 BASE COUNT 376 a 302 c 412 g 317 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........GU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AG- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU U-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-NN-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-NGNG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.bilis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter bilis str. Hb1 ATCC 51630 (T). ACCESSION No information KEYWORDS No information. SOURCE Helicobacter bilis str. Hb1 ATCC 51630 (T). ORGANISM Helicobacter bilis. REFERENCE 1 AUTHORS Fox,J.G., Yan,L.L., Dewhirst,F.E., Paster,B.J., Shames,B., Murphy,J.C., Hayward,A., Belcher,J.C. and Mendes,E.N. TITLE Helicobacter bilis sp. nov., a novel Helicobacter isolated from bile, liver and intestine of aged, inbred mouse strains JOURNAL J. Clin. Microbiol. 33, 445-454 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51630 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18766|g624261 (bases 375 to 1616) isolate_name= Hb1 BASE COUNT 378 a 306 c 420 g 322 t 2950 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---------- ---------- 601 --(------- ---------- ---)------ ---------| ---------- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AG- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU U-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAG--- UG-------- -CUGG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CCAG------ ----AG---| CUU-GA-ANA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-CA -UA--CANAN AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-CC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter canis. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter canis. ORGANISM Helicobacter canis. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L.W. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: an integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13464|g435047 NCTC 12739 (T) = ATCC 51401 geog_source= Switzerland biol_source= dog with diarrhea BASE COUNT 372 a 296 c 408 g 327 t 2973 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCN A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-N C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 UG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AA- 1261 G-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU U-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA-GC- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAANU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CA -UA--CAAUG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.canis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter canis. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter canis. ORGANISM Helicobacter canis. REFERENCE 1 AUTHORS Linton,D., Clewley,J.P., Burnens,A., Owen,R.J. and Stanley,J . TITLE An intervening sequence in the 16S rRNA gene of the eubacterium Helicobacter canis JOURNAL Nucleic Acids Res. 22, 1954-1958 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04344|g467990 (bases 388 to 1589) BASE COUNT 403 a 292 c 370 g 290 t 3021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAUG AA-------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- -----UU--- ---)------ ---------| --------C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGA-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| UUUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AA- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU U-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CG- C-GAAA---- -U--GG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-C-U- ----GGUA-G UC----CAC- G-CC-U---- 1621 AAC-G-AUG- A--UG-CU-- -------A|G -UU-GU-UGC -C--UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UC--GC---- --AG-(AAA- ---A)C-AC- AAAA-AACAC C|C|C-CCC- G-GAGAACAC 1801 GCG-C---(A AAA)---G-A AA-AAAACAA -AAA-AAAAU AC-ACGGA-C -A-C-CC--C 1861 A-A--AA-AC CGGGGA-ACA A-G-GG-GGU -UAAAUC-CA -(AAAAAA-C C)--CAAAAA 1921 A-CCUAA-CC AAG-CC-UGA AAA-UG|--- ---------A ---AAAA--- -AA----CCC 1981 -CCU-A--(- GAGA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UG-AAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GU--ACA--- --CCA-U-GG A--GU-UGU- A--UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CC U---A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlb.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helicobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Helicobacter sp. ORGANISM Helicobacter sp. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from An integrated study of phenotype and genotype JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Dewhirst,F.E., Paster,B.J., Fraser,G.J. and Fox,J.G. TITLE Phylogeny of 50 strains representing species in genera Campylobacter, Arcobacter, Helicobacter, and Wolinella as determined by comparison of 16S rRNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14634 BASE COUNT 371 a 298 c 411 g 318 t 2978 others ORIGIN 1 .......... .......... .......... ..NNUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----NG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U NAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCUU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------NN-- N(-GAAA-)C -GGUG-A--U UAAUAC.... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ...ACU--C- G--CUA---- 661 ----AAGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A S-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CUCC| NNUU-GU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GG-AA- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-C UG-UAG-C(- UU-A)A-CUA -CA-G-AAC- 1321 -UGCA-UUUG A-AAC-UACU N-UUCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-AAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA A--UG-CU-- -------N|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGNAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGAGU-- GU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AC---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -YA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCU--AAAA -UG-U-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UAAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-UCG 3121 G-GAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-NC-GC-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.1.2 WLN.SUCCINOGENES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.1.2 WLN.SUCCINOGENES. ORGANISM 2.14.5.1.2 WLN.SUCCINOGENES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wln.succi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolinella succinogenes str. 602W (FDC) ATCC 29543 (T). ACCESSION No information KEYWORDS No information. SOURCE Wolinella succinogenes str. 602W (FDC) ATCC 29543 (T). ORGANISM Wolinella succinogenes. REFERENCE 1 AUTHORS Krakowa,S. and Morgan,D.R. Eaton,K.A., Radin,M.J., Fox,J.G., Paster,B.J., Dewhirst,F.E., TITLE gastritis Helicobacter acinonyx sp. nov., isolated from cheetahs with JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29543 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88159 ATCC 29543 (T) = NCTC 11488 = FDC 602 isolate_name= 602W (FDC) BASE COUNT 377 a 315 c 431 g 314 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUU---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-C AA-CGG-C(- UU-A)A-CCG -UU-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCA A-GGCNA-GA GUA-----UG G-GA-GAGGU AGG-N|GGAA 1381 UU-CUCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-GAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNNA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UU|--- ---------G ---ANAG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- -CCGG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUGG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--ACU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -YA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUUU--AAAA -CA-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAC-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wln.succi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolinella succinogenes str. 602W (FDC) NCTC 11488. ACCESSION No information KEYWORDS No information. SOURCE Wolinella succinogenes str. 602W (FDC) NCTC 11488. ORGANISM Wolinella succinogenes. REFERENCE 1 AUTHORS Khan,M.A., Drasar,B.S. and Stoker,N.G. TITLE Analysis of ribosomal RNA genes of Helicobacter pylori JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11488 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z25745 NCTC 11488 = ATCC 29543 (T) = FDC 602 isolate_name= 602W (FDC) BASE COUNT 245 a 203 c 262 g 197 t 3469 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .........C AA-CGG-C(- UU-A)A-CCG -UU-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCA A-GGCUA-GA GUA-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-GAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-AG)U ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- -CCAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUGG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--ACU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUUU--AAAA -CA-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAC-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG -(UGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wln.succin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Wolinella succinogenes str. 602W (FDC) ATCC 29543 (T). ACCESSION No information KEYWORDS No information. SOURCE Wolinella succinogenes str. 602W (FDC) ATCC 29543 (T). ORGANISM Wolinella succinogenes. REFERENCE 1 AUTHORS Suflita,J.M. DeWeerd,K.A., Mandelco,L., Tanner,R.S., Woese,C.R. and TITLE anaerobic, dehalogenating, sulfate-reducing bacterium Desulfomonile tiedjei gen. nov. and sp. nov., a novel JOURNAL Arch. Microbiol. 154, 23-30 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29543 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26636 ATCC 29543 (T) = NCTC 11488 = FDC 602 isolate_name= 602W (FDC) BASE COUNT 377 a 318 c 425 g 322 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CUAUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GC-AUAGG- UUA--UGU-G C-CCCA---U -AGUC-U-GG 421 -AAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUU---- ---------- ---------- ---------- ---CCC-(-- --------GA 541 GA-------- -)-GGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUC---A-|G CCUAU----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UUUU-CU-AA 1021 --GA-GAA-- G--------- ---------( ------AUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCU-U-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UNAA-GAGC- ACG-UAG-GC -G|-GC-CU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-C AA-CGG-C(- UU-A)A-CCG -UU-G-AAC- 1321 -UGCA-UUUG A-AAC-UGCA A-GNCCA-GA GUN-----UG G-GA-GAGGU AGG-U|GGAA 1381 UU-CUCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-GAGAGG- AAUA-CUCA- 1441 -U-U-GC(-G AA-G)GCGA- -CCUGCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- UU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UU-GU-UGC -CC-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------NAG -GGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUUC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-NNGGG-G -A-N-CC--G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG .(........ G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCC 1981 -UAU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- -CCAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUGG------ ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--ACU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-NC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-UG -UA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUUU--AAAA -CA-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGU- AU-UC-GCCU -UAA-G-CCG 3121 G-GAC-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-C-U A-CC-GU-CC A-CGGC-GGA UGC-AG-CG- ACN-GGGG-N 3301 G......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.2 CAMPYLOBACTER_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.2 CAMPYLOBACTER_AND_RELATIVES. ORGANISM 2.14.5.2 CAMPYLOBACTER_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.2.1 THIOVULUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.2.1 THIOVULUM_SUBGROUP. ORGANISM 2.14.5.2.1 THIOVULUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB32 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15107|g710316 library_source= Pele's Vents Bacterium DNA BASE COUNT 390 a 304 c 419 g 319 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--K ASAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGW-AG (--CU----- ---------- ---------- 241 --------UG -)CU-WCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-Y GAGU---AAU -AU-AUAGA- URA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UC-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CYACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACG-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB63 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15102|g710311 library_source= Pele's Vents Bacterium DNA BASE COUNT 392 a 305 c 419 g 323 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--U ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGA- UAA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UC-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CCACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGGCG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15104|g710313 library_source= Pele's Vents Bacterium DNA BASE COUNT 393 a 306 c 417 g 323 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--C ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGA- UAA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-CUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUG----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB55 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15105|g710314 library_source= Pele's Vents Bacterium DNA BASE COUNT 392 a 304 c 418 g 324 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--C ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGA- UAA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAG-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(URA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15103|g710312 library_source= Pele's Vents Bacterium DNA BASE COUNT 397 a 303 c 416 g 323 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A AAAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGA- UAA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UC-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU A-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACAGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UCU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15101|g710310 library_source= Pele's Vents Bacterium DNA BASE COUNT 392 a 304 c 421 g 322 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G AGAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-C GAGU---AAU -AU-AUAGA- UGA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UC-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UCUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15100|g710309 library_source= Pele's Vents Bacterium DNA BASE COUNT 392 a 303 c 421 g 323 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G AGAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-C GAGU---AAU -AU-AUAGA- UGA--UGU-G C-CUCU---U -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UC-- G(-GAAA-)C -GAUG-A--U UAAUACU-GG 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G UCUAU----- -AU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-GA-AAG|U CAG---AUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-UUUG A-AAC-UUCC A-AUCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AAGA--- -AA----CAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UCG 3121 G-GAA-G-CC -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-GC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A15jk 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A15jk.. ACCESSION No information KEYWORDS No information. SOURCE clone A15jk. ORGANISM clone A15jk. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91438|g987743 BASE COUNT 100 a 68 c 104 g 75 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-UC-AAG|U CAG---AUGU G-AAA-UC-C AA-UGG-C(- UC-A)A-CCA -UU-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGC A-ACCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCUA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB73 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15106|g710315 library_source= Pele's Vents Bacterium DNA BASE COUNT 394 a 304 c 420 g 322 t 2936 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--C AGAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGA- UAA--UGU-G C-CUCU---C -AGUC-U-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACU-AG 481 AU-ACU---- ---------- -------C-C UU-C--U-C- ---AAU-(-- --------CA 541 AA-------- -)-UUU---- GA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CUA---- 661 ----AGAG-- AUC---G-|G ACUAU----- -AU|----CC C--AUCA-G- GUA-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GGA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AG 1021 --GC-CAA-- G--------- ---------( -----A-AAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAU UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-AA- 1261 G-CC-AAG|U CUG---AUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCA-UUGG A-AAC-UGGU U-ACCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -G-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AA-UA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU U--CA-CU-- -------A|G -UC-GU-CGG -AA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -UUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGAA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AUUG--- -AA----UUC 1981 -CGC-A--(- GAGA-)-UGU -A-GAAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CAU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AG-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CACUU-AAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UUACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UUG 3121 G-GAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-AC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tms.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiomicrospira denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Thiomicrospira denitrificans. ORGANISM Thiomicrospira denitrificans. REFERENCE 1 AUTHORS Muyzer,G., Teske,A.P., Wirsen,C.O. and Jannasch,H.W. TITLE Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments JOURNAL Arch. Microbiol. 164, 165-172 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40808|g790922 BASE COUNT 397 a 301 c 420 g 326 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-ACUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGU- UAA--UGU-A C-CUCA---A -AGAC-U-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACU-AG 481 AU-AUA---- ---------- -------C-C UU-U--A-U- ---AAC-(-- --------AA 541 AA-------- -)-GUU---- GU-AA----A GG--GAAAU- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----UGAG-- AUC---A-|G ACUAU----- -AU|----CC C--AUCA-G- UUA-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-GG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CCG-C|C-AC -ACUGG-U-A 841 (CUGA-GA-C ACG)--GACC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 AGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-GA 1021 --GU-CAA-- G--------- ---------( ------AAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCU-C-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-UC-AAG|U CAG---GUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-CUUG A-AAC-UGGC A-ACCUA-GA GUA-----UG G-GA-GGGGA AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCUA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUUCUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGU -GA-UG---- ---------- 1681 -(CUU-GU)- ---------- ---------- ---------- -------CAU -UGCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAAA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UU|--- ---------G ---AUAG--- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UN(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-NC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-CG -UA--CAGAG UGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CACU-UAAAG -CG-U-CUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAUU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-A-UUG 3121 G-GAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-C-U A-CC-AC-UU A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A14jsn 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A14jsn.. ACCESSION No information KEYWORDS No information. SOURCE clone A14jsn. ORGANISM clone A14jsn. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91437|g987742 BASE COUNT 100 a 67 c 105 g 76 t 4028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GG-UU- 1261 G-UC-AAG|U CAG---GUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-CUUG A-AAC-UGGC A-ACCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-UCAA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUU C|C|G-CCU. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s28 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s28. str. s28. ACCESSION No information KEYWORDS No information. SOURCE str. s28. str. s28. ORGANISM str. s28. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69332|g1181115 isolate_name= s28 BASE COUNT 100 a 65 c 100 g 74 t 4037 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUC-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- CCGUAUG-GC -G|-GG-UU- 1261 G-UC-AAG|U CAG---GUGU G-AAA-UC-C UA-CAG-C(- UU-A)A-CUG -UA-G-AAC- 1321 -UGCA-CUUG A-AAC-UGGC A-ACCUA-GA GUA-----UG G-GA-GGGGG AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-UCAA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUCCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -UC-GU-CGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCGG-UDA 1741 UK--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUG.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thvl.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiovulum sp.. ACCESSION No information KEYWORDS No information. SOURCE Thiovulum sp. ORGANISM Thiovulum sp. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G.J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92324 (bases 1 to 415) BASE COUNT 331 a 259 c 365 g 290 t 3131 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AG-AUA-G- UUA--CAU-G C-C-UU---C -GGUC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-AUU---- ---------- ---------- ---------- ---CCA-(-- --------GA 541 AA-------- -)-UGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CCG---- 661 ----AAGG-- AUU---G-|G GCUAU----- -CU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-UU-CG 1021 --GA-GAA-- G--------- ---------( -------UU- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-AA G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -U|-GG-UU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-U CA-CAG-C(- GG-A)A-CUG -UG-A-AAC- 1321 -UGCA-UUUG A-AAC-UGCU U-ACCUC-GA GUA-----UG G-AA-GAGGC AGA-U|GG-A 1381 UU-AAUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AUUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 GAC--AU-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------U|G -UC-GU-CGG -CG-GC---- ---------- 1681 -(CAA-GU)- ---------- ---------- ---------- -------GUC -GUCGG-UGA 1741 UU--CA---- --CN-(UAA- ---C)G-GA- UUAA-NNNNU C|C|G-CCN- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UU|--- ---------G ---UAAG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGU -G-AAAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UC--UUU- 2281 UA--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-GA-U A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-U CG-ACG--UC -A-AGUC-AU UAU-G-GC-S CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CURCN AUGGG-G-CA -UA--CAGAG AGU-C-G-C- AACGAU-C(G 2881 -CGA)GGUG- ---------- AR-GCUAA-U CUUU--AAAG -UG-U-CUC- KCAGUUCGGA 2941 U-UAUUCUC- (UGCAAC-U- C)-GAGAAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -RGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Thvl.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thiovulum sp.. ACCESSION No information KEYWORDS No information. SOURCE Thiovulum sp. ORGANISM Thiovulum sp. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 331 a 258 c 365 g 290 t 3132 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AC (--UU----- ---------- ---------- 241 --------CG -)GU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AG-AUAG-- UUA--CAU-G C-C-UU---C -GGUC-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CG 481 AU-AUU---- ---------- ---------- ---------- ---CCA-(-- --------GA 541 AA-------- -)-UGG---- ---------- ----GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--CCG---- 661 ----AAGG-- AUU---G-|G GCUAU----- -CU|----CC C--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-UU-CG 1021 --GA-GAA-- G--------- ---------( -------UU- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCC-G-AA G-AA--UAAG ---------C 1141 -AUCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GAUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -U|-GG-UU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-U CA-CAG-C(- GG-A)A-CUG -UG-A-AAC- 1321 -UGCA-UUUG A-AAC-UGCU U-ACCUC-GA GUA-----UG G-AA-GAGGC AGA-U|GG-A 1381 UU-AAUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AUUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 GAC--AU-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------U|G -UC-GU-CGG -CG-GC---- ---------- 1681 -(CAA-GU)- ---------- ---------- ---------- -------GUC -GUCGG-UGA 1741 UU--CA---- --SN-(UAA- ---C)G-GA- UUAA.....U C|C|G-CCN- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAAA 1921 A-CCUUA-CC UAC-CC-UUG ACA-UU|--- ---------G ---UAAG--- -AA----UUU 1981 -UGC-A--(- GAGA-)-UGU -G-AAAG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-U |-UC--UUU- 2281 UA--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-GA-U A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-U CG-ACG--UC -A-AGUC-AU UAU-G-GC-S CUUAU-G-GG -UA--GGGC- 2821 U-ACA-CA-C GUG--CURCN AUGGG-G-CA -UA--CAGAG AGU-C-G-C- AACGAU-C(G 2881 -CGA)GGUG- ---------- AR-GCUAA-U CUUU--AAAG -UG-U-CUC- KCAGUUCGGA 2941 U-UAUUCUC- (UGCAAC-U- C)-GAGAAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -RGA-AU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN5bf 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN5bf.. ACCESSION No information KEYWORDS No information. SOURCE clone JN5bf. ORGANISM clone JN5bf. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69270|g1177274 BASE COUNT 96 a 67 c 107 g 78 t 4028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -U|-GA-CU- 1261 U-UU-AAG|U CAG---GCGU G-AAA-UUCC AA-UGG-C(- UU-A)A-CCA -UU-G-AAC- 1321 -UGCG-CUUG A-AAC-UGGG A-GUCUA-GA GUU-----CA G-AA-GGGGC AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-UCAA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 GAU--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UC-GU-CGG -GG-AG---- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- -------CUC -UUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GCAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G15 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G15.. ACCESSION No information KEYWORDS No information. SOURCE clone G15. ORGANISM clone G15. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91187|g984110 BASE COUNT 96 a 67 c 107 g 77 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -U|-GA-CU- 1261 U-UU-AAG|U CAG---GCGU G-AAA-UC-C AA-UGG-C(- UU-A)A-CCA -UU-G-AAC- 1321 -UGCG-CUUG A-AAC-UGGG A-GUCUA-GA GUU-----CA G-AA-GGGGC AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-UCAA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 GAU--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UC-GU-CGG -GG-AG---- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- -------CUC -UUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GCAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s26 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s26. str. s26. ACCESSION No information KEYWORDS No information. SOURCE str. s26. str. s26. ORGANISM str. s26. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69330|g1181113 isolate_name= s26 BASE COUNT 96 a 64 c 103 g 77 t 4036 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......GAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GGGU- NNG-UAG-GC -U|-GA-CU- 1261 U-UU-AAG|U CAG---NNNN G-AAA-UC-C AA-UGG-C(- UU-A)A-CCA -UU-G-AAC- 1321 -UGCG-CUUG A-AAC-UGGG A-GUCUA-GA GUU-----CA G-AA-GGGGC AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-UCAA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 GAU--GA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -UC-GU-CGG -GG-AG---- ---------- 1681 -(CUC-GU)- ---------- ---------- ---------- -------CUC -UUCGG-UGA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GCAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A7 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A7.. ACCESSION No information KEYWORDS No information. SOURCE clone A7. ORGANISM clone A7. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08396|g475616 BASE COUNT 136 a 104 c 147 g 100 t 3889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --GG-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U UGG---AUGU G-AAA-GC-C UA-UGG-C(- UC-A)A-CCA -UA-G-AAC- 1321 -UGCA-UCCA A-AAC-UAUC A-GGCUA-GA GUG-----UG G-GA-GAGGA AGA-U|GGAA 1381 UU-AGUUGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UA-ACUAGG- AAUA-CCAA- 1441 -A-A-GC(-G AA-G)GCAA- -UCUUCUG-- ---------- ---------- ---------G 1501 AAC--AU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-GUGA U--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GA......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Alvn56 4376 bp RNA RNA 02-JUL-1998 DEFINITION epibiont of. ACCESSION No information KEYWORDS No information. SOURCE epibiont of. ORGANISM epibiont of. REFERENCE 1 AUTHORS Haddad,M.A., Camacho,F. and Cary,S.C. TITLE Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete, Alvinella pompejana JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35522|g556009 symbiont_of= epibiont of Alvinella pompejana isolate_name= APG56B BASE COUNT 397 a 341 c 459 g 305 t 2874 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--G--AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A CAG--GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUG-C UGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--CAU-G C-CCUU---U -GGAG-G-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACC-CC 481 AU-ACU---- ---------- -------C-C UC-G--A-G- ---AAC-(-- --------UU 541 AA-------- -)-GUU---- CU-UG----A GG--GAAAU- ---C------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------G- G--CCA---- 661 ----AAGG-- AUU---G-|G GCUAU----- -AU|----AG U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-C-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--A-C CC(--UU-AG --)GG-GCGU AAA--CUCC| UUUU-AU-CA 1021 --GG-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-CAG-GC -G|-GU-UU- 1261 G-GC-AAG|C UAG---AUGU G-AAA-GC-C UG-UAG-C(- UC-A)A-CCA -CA-G-AAC- 1321 -UGCA-UCUA G-AAC-UGC- A-GACUA-GA GUC-----UG G-GA-GGGGU AGC-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -GCUACUG-- ---------- ---------- ---------G 1501 AAC--AG-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -UC-GU-UGG -AG-AG---- ---------- 1681 -(CAA-GU)- ---------- ---------- ---------- -------CUC -UCCAG-UGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUC C|C|G-CCA- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-UC-UUG ACA-UC|--- ---------G ---AUGG--- -AA----CCU 1981 -GCU-A--(- GAGA-)-UAG -C-GGGG--- UG-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGGG------ ----AA---| CCU-GA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUU- 2281 AG--UUGC-U AA-CAGG--- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCC --GG(-G--C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -UG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-C-AG -GA--CAGAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-G CUGU-UAAAC -CU-G-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCNCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- GU-UC-ACCC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-CU-CC A-CGGU-GGG CUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGA-A)CC UGUGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Alvn44 4376 bp RNA RNA 02-JUL-1998 DEFINITION epibiont of. ACCESSION No information KEYWORDS No information. SOURCE epibiont of. ORGANISM epibiont of. REFERENCE 1 AUTHORS Haddad,M.A., Camacho,F. and Cary,S.C. TITLE Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete, Alvinella pompejana JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35521|g556008 symbiont_of= epibiont of Alvinella pompejana isolate_name= APG44b BASE COUNT 399 a 344 c 449 g 310 t 2874 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CAG--- (--CU----- ---------- ---------- 241 --------UG -)CA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- CUG|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AGU -GU-AUAGC- UAA--UAU-G C-CCUU---U -GGAG-G-GG 421 -GAU-AG-CC A--------- ------CU-- A(-GAAA-)U -GGUG-A--U UAAUACC-CC 481 AU-ACU---- ---------- -------A-C UU-C--U-U- ---CUC-(-- --------AC 541 AA-------- -)-GAG---- UU-GA----U GG--GAAAU- ---C------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------G- G--CCA---- 661 ----AAGG-- AUU---G-|G GCUAU----- -AC|----GG U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-UG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A A-GAC--A-C CC(--UU-CG --)GG-GCGU AAA--CUCC| UUUU-AU-AG 1021 --CC-GAA-- G--------- ---------( -------UUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GGC-U-AU G-AA--UAAG ---------C 1141 -ACCGGCA-A ACUCC-GUG( CCA--GCAG- CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-CAG-GC -G|-GU-AU- 1261 U-GU-AAG|C UAG---AUGU G-GAA-GC-C UA-CAG-C(- UC-A)A-CUG -UA-G-AAC- 1321 -UGCA-UCUA G-AAC-UGCG A-UACUA-GA GUC-----UG G-GA-GAGGU AAC-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCAA- -GUUACUG-- ---------- ---------- ---------G 1501 AAC--AG-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -UC-GU-UGG -GA-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -CUCAG-CGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CAG-CC-UUG ACA-UC|--- ---------G ---AUGG--- -AA----CCC 1981 -GCU-A--(- GAAA-)-UAG -U-GGGG--- UG-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGGG------ ----AG---| CCU-GA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UG--CUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AAG-CA-G A-CU-G-CCC --GG(-G--C AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -UG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-U-AG -GA--CAGAA AGA-U-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-A CUCU--AAAC -CU-A-CUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- GU-UC-ACCC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-AG-C-U A-CC-CU-CC A-CGGU-GGG CUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Rimiex 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Polz,M.F. and Cavanaugh,C.M. TITLE Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site JOURNAL Proc. Natl. Acad. Sci. U.S.A. 92, 7232-7236 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29081|g902024 symbiont_of= Rimicaris exoculata BASE COUNT 395 a 284 c 389 g 307 t 3001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........GU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAG-CAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGGC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UUU-G C-CUCU---U -GGAG-A-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAUACC-UC 481 AU-ACU---- ---------- -------C-C UU-A--C-A- ---UAG-(-- --------UA 541 AA-------- -)--UA---- UG-UA----A GG--GAAAU- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--CCA---- 661 ----AGAG-- AUA---A-|G ACUAU----- -AU|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GU-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AU 1021 --AG-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- AUCGCAG-GC -G|-GU-CC- 1261 A-AU-AAG|U UAG---AAGU G-AAA-UC-C UA-UGG-C(- UC-A)A-CCA -UA-G-AAC- 1321 -UGCU-UCUA A-AAC-UAUU A-GACUA-GA GUC-----UG G-GA-GGGGA AGA-U|GGAA 1381 UU-AGUAGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UU-ACUAGG- AAUA-CCAA- 1441 -A-A-GC(-G AA-G)GC-A- -UCUUCUG-- ---------- ---------- ---------G 1501 AAC--AG-UA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -UC-GU-UGG -GU-CU---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------AGA -UUCAG-UGA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-CC-UUG ACA-UU|--- ---------G ---AGAG--- -AA----UCC 1981 -GAC-A--(- GAGA-)-UGU -U-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUU-GA-AAA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCU --UC(-G--Y AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC----- -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-U-AG -GA--CAAUG AGA-A-G-C- AA-UAC-U(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUAU--AAAC -CU-A-AUC- UCAGUUCGGA 2941 U-AGCAGUC- (UGCAAC-U- C)-GACUGCU -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- ARUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UN-YC-ACCC -GAA-G-CSG 3121 GC........ .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Alvn5 4376 bp RNA RNA 02-JUL-1998 DEFINITION epibiont of. ACCESSION No information KEYWORDS No information. SOURCE epibiont of. ORGANISM epibiont of. REFERENCE 1 AUTHORS Haddad,M.A., Camacho,F. and Cary,S.C. TITLE Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete, Alvinella pompejana JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35523|g556010 symbiont_of= epibiont of Alvinella pompejana isolate_name= APG5A BASE COUNT 415 a 321 c 446 g 311 t 2883 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAG--A--UC (--UU----- ---------- ---------- 241 --------CG -)GA-GUG-C UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGC- UAA--CUU-G C-CUCU---U -GGAG-A-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)G -GGUG-A--U UAAUACC-UC 481 AU-ACU---- ---------- -------C-C UC-U--U-A- ---ACU-(-- --------AU 541 AA-------- -)-GGU---- UA-AG----A GG--GAAAU- ---GG----- ---------- 601 --(------- --UUUAUU-- ---)------ ---------| -----C--C- G--CCA---- 661 ----AGGG-- AUA---G-|G GCUAU----- -AU|----GG U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----CG-CC 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--A-C CC(--UU-AG --)GG-GCGU AAA--CUCC| UUUU-AU-AG 1021 --UC-GAA-- G--------- ---------( ------AAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GAC-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GU-UA- 1261 A-UU-AAG|U UAG---AAGU G-AAA-GC-C CA-CAG-C(- UU-A)A-CUG -UG-G-AAC- 1321 -AGCU-UCCA A-AAC-UGAU U-AACUA-GA GUC-----UG G-GA-GAGGA AGA-U|GGAA 1381 UU-AGUAGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UU-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUUCUG-- ---------- ---------- ---------G 1501 AAC--AG-GA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -UC-GU-UGG -AG-UG---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------CAC -UUCAG-UGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- --------UA ---CCAG--- -AA----CCC 1981 -ACC-A--(- GAGA-)-UGG -U-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-GU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-UC-G |-UG--ACU- 2281 AG--UUAC-U AA-CAGC--- ---------- ---------- ----(---AU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGU-CA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-G-AG -GA--CAAUG AGA-A-G-C- GA-AAU-C(G 2881 -CGG)GAUG- ---------- GA-GCAAA-U CUAU--AAAC -CU-U-CUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCAC-GCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --A-GG-C-U A-CC-CG-CC A-CGGU-GGA A-------G- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGN-A)CC UGUGGN--UG GAUCACCNCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Alvn13 4376 bp RNA RNA 02-JUL-1998 DEFINITION epibiont of. ACCESSION No information KEYWORDS No information. SOURCE epibiont of. ORGANISM epibiont of. REFERENCE 1 AUTHORS Haddad,M.A., Camacho,F. and Cary,S.C. TITLE Phylogenetic characterization of the epibiotic bacteria associated with the hydrothermal vent polychaete, Alvinella pompejana JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35520|g556011 symbiont_of= epibiont of Alvinella pompejana isolate_name= APB13b BASE COUNT 424 a 319 c 437 g 320 t 2876 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CAG--G--UC (--UU----- ---------- ---------- 241 --------CG -)GA-GUG-C UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UUU-U C-CCCU---U -GGAG-A-GG 421 -GAU-AG-CC A--------- ------CU-- G(-GAAA-)C -GGUG-A--U UAAUACC-UC 481 AU-ACU---- ---------- -------C-C UU-U--U-A- ---ACC-(-- --------AA 541 AA-------- -)-GGU---- UG-AA----A GG--GAAAU- ---GG----- ---------- 601 --(------- --UUUAUU-- ---)------ ---------| -----C--U- G--CCA---- 661 ----AGGG-- AUA---A-|G ACUAU----- -AU|----CC U--AUCA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAG-GG) -A-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-C AU(--UU-AG --)GU-GUGU AAA--CUCC| UUUU-AU-CA 1021 --AG-GAA-- G--------- ---------( ------AAGA ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GU-UG- 1261 A-UU-AAG|U UAG---AAGU G-AAA-GC-C UA-CGG-C(- UC-A)A-CCG -UA-G-AAC- 1321 -AGCU-UCUA A-AAC-UGAU U-AACUA-GA GUC-----UG G-GA-GAGGA AGA-U|GGAA 1381 UU-AGUAGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UU-ACUAGG- AAUA-CCGA- 1441 -A-A-GC(-G AA-G)GCGA- -UCUUCUG-- ---------- ---------- ---------G 1501 AAC--AG-GA CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-UU-- -------A|G -UC-GU-UGG -AG-UG---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------CAC -UUCAG-CGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUU C|C|G-CCU- G-GGGAGUAC 1801 GSC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG ACA-UA|--- --------UA ---UCAG--- -AA----CCC 1981 -ACC-A--(- GAGA-)-UGG -U-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUG-AU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG U)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--ACU- 2281 AG--UUAC-U AA-CAGC--- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGU-CA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UA-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-GC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-A-AG -GA--CAAAG AGA-A-G-C- AA-AAC-U(G 2881 -CGA)GGUG- ---------- GA-GYAAA-U CUAU--AAAC -CU-U-CUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACCC -GAA-G-UGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --A-GG-C-U A-CC-CA-CC A-CGGU-GGA AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.5.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.5.2.2 CAM.FETUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.5.2.2 CAM.FETUS_SUBGROUP. ORGANISM 2.14.5.2.2 CAM.FETUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.cryaer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter cryaerophilus. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter cryaerophilus. ORGANISM Arcobacter cryaerophilus. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14624 Former RDP Sids: Arcb.cryae CCUG 17801 (T) = ATCC 43158 BASE COUNT 424 a 283 c 397 g 355 t 2917 others ORIGIN 1 .......... .......... .......... ......AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- UAA--UAU-G C-CUCU---U -ACUA-A-GG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -GAUU-G--C UAAUACC-UU 481 AU-ACU---- ---------- -------C-C UU-G--U-U- ---AAC-(-- --------UN 541 AA-------- -)-GUU---- AA-UA----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----AGAG-- AUU---A-|G CCUGU----- -AU|----UG U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----CA-CA 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UUUU-AU-AU 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GA-UU- 1261 G-AU-AAG|U UUG---AAGU G-AAA-UC-C UA-UAG-C(- UU-A)A-CUA -UA-G-AAC- 1321 -UGCU-UUGA A-AAC-UGUU A-AUCUA-GA AUG-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA UUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGU -GA-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCU -UGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-AU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UN--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAA-CA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UA -UA--CAAAG AGC-C-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CUUAU-AAAA -UA-U-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- AC-UC-AUUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA UUU-GG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.cryae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter cryaerophilus. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter cryaerophilus. ORGANISM Arcobacter cryaerophilus. REFERENCE 1 AUTHORS Wesley,I.V., Schroeder-Tucker,L., Baetz,A., Dewhirst,F.E. and Paster,B.J. TITLE Arcobacter-specific and Arcobacter butzleri-specific 16S rRNA-based DNA probes JOURNAL J. Clin. Microbiol. 33, 1691-1698 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25805|g818884 BASE COUNT 419 a 281 c 393 g 355 t 2928 others ORIGIN 1 .......... .......... .......... .......UGG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- UAA--UAU-G C-CUCU---U -ACUA-A-GG 421 -GAU-AA-CA A--------- ------AU-- G(-GAAA-)C -GUUU-G--C UAAUACC-UU 481 AU-ACU---- ---------- -------C-C UU-A--U-U- ---AAC-(-- --------AG 541 AA-------- -)-GUU---- AA-UA----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----AGAG-- AUU---A-|G CCUGU----- -AU|----UG U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----CA-CA 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UUUU-AU-AU 1021 --GA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GA-UU- 1261 A-AU-AAG|U UUG---AAGU G-AAA-UC-C UA-UAG-C(- UN-A)A-CUA -UA-G-AAC- 1321 -UGCU-UUGA A-AAC-UGUU A-AUCUA-GA AUG-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA UUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGU -GA-GA---- ---------- 1681 -(CUU-GA)- ---------- ---------- ---------- -------UCU -UGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUN-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-AU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UN--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAA-CA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UA -UA--CAAAG AGC-G-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CUUAU-AAAA -UA-U-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- AC-UC-AUUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA UUU-GG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.skirro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter skirrowii str. 449/80 CCUG 10374 (T). ACCESSION No information KEYWORDS No information. SOURCE Arcobacter skirrowii str. 449/80 CCUG 10374 (T). ORGANISM Arcobacter skirrowii. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14625 Former RDP Sids: Arcb.skirr CCUG 10374 (T) = LMG 6621 = DSM 7302 isolate_name= 449/80 BASE COUNT 415 a 281 c 391 g 347 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- UAA--UAU-G C-CUCU---U -ACUA-A-GG 421 -GAU-AA-CA A--------- ------AU-- G(-GAAA-)C -GUUU-G--C UNAUACC-UU 481 AU-ACU---- ---------- -------C-C UN-U--U-A- ---AAC-(-- --------AA 541 AA-------- -)-GUU---- UA-AA----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----AGAG-- AUU---A-|G CCUGU----- -AU|----UG U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----CA-CA 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UUUU-AU-AU 1021 --AA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GA-UU- 1261 A-AU-AAG|U UUG---AAGU G-AAA-UC-C UA-UAG-C(- UU-A)A-CUA -UA-G-AAC- 1321 -UGCU-UUGA A-AAC-UGUU G-AUCUA-GA AUG-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UUUACUG-- ---------- ---------- ---------G 1501 AAC--AC-AA UUGACG-CUG AG-A------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGU -GA-GA---- ---------- 1681 -(CUN-GA)- ---------- ---------- ---------- -------UCU -UGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGG....... ....GU-GGU -UUAAUU-CG -(ANNNNA-C A)--CGAAGA 1921 A-CCUUA-CC UKG-AC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UCU-A--(- GAGA-)-UAG -A-UUGG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-AU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAA-CA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-UA -UA--CAAAG AGC-G-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CUUAU-AAAA -UA-U-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- AC-UC-AUUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA UUU-GG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.butzlr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter butzleri. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter butzleri. ORGANISM Arcobacter butzleri. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14626 Former RDP Sids: Arcb.butzl NB: former name Arcobacter butzlerii aka Campylobacter butzleri BASE COUNT 422 a 284 c 401 g 348 t 2921 others ORIGIN 1 .......... .......... .......... ......AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUUAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUAAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGG- UAA--UAU-G C-CUCU---U -ACUA-A-GG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -GAUU-G--C UAAUACC-UU 481 AU-AUU---- ---------- -------C-C UU-U--U-U- ---AUC-(-- --------AA 541 AA-------- -)-GAU---- AA-AA----A GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----U--U- G--GUA---- 661 ----AGAG-- AUU---A-|G CCUGU----- -AU|----UG U--AUCA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UUUU-AU-AU 1021 --AA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GA-UU- 1261 A-AU-GAG|U UUG---AAGU G-AAA-UC-C UA-UAG-C(- UU-A)A-CUA -UA-G-AAC- 1321 -UGCU-UUGA A-AAC-UGUU A-AUCUA-GA AUG-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AA-UA UUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNNA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----UGA 1981 -UUU-A--(- GAGA-)-UAG -A-UUAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-GC-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAG-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UA -UA--CAAAG AGC-A-G-C- AA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CUCA--AAAA -UG-C-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- AC-UC-AUUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA UUC-AG-YG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.nfigil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter nitrofigilis. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter nitrofigilis. ORGANISM Arcobacter nitrofigilis. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14627 Former RDP Sids: Arcb.nfigi BASE COUNT 413 a 300 c 409 g 330 t 2924 others ORIGIN 1 .......... .......... .......... ......AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUUAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUAAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---NAU -AU-AUAGG- UAA--CAU-G C-CCUA---G -AGAG-G-GG 421 -GAU-AA-CA G--------- ------AU-- G(-GAAA-)C -GUCU-G--C UAACACC-CN 481 AU-AUG---- ---------- -------C-C UU-U--A-A- ---GAC-(-- --------YA 541 AA-------- -)-GUC---- UG-CA----A GG--GAAA-- ---CA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CUC---- 661 ----UAGG-- AUU---G-|G CCUGU----- -AC|----GG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----CA-CC 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UUUU-AU-AU 1021 --AG-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUUA -CU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GG-UA- 1261 A-AU-AAG|U UGG---AAGU G-AAA-UC-C UA-UGG-C(- UC-A)A-CCA -UA-G-AAC- 1321 -UGCU-UCCA A-AAC-UGUU A-ACCUA-GA AUG-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-NA UUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGU -GA-GG---- ---------- 1681 -(CUA-GA)- ---------- ---------- ---------- -------CCU -UGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CUU 1981 -UUU-A--(- GAGA-)-UAA -A-UUGG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-AC-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UA -UA--CAAAG AGC-A-G-C- GA-UAC-G(G 2881 -UGA)CGUG- ---------- GA-GCGAA-U CUCA--AAAA -UG-C-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-USA- AU-UC-AUUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA UUU-AG-YG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aob.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Arcobacter sp. ORGANISM Arcobacter sp. REFERENCE 1 AUTHORS Teske,A.P., Sigalevich,P., Cohen,Y. and Muyzer,G. TITLE Molecular identification of bacteria from a mixed culture by denaturing gradient gel electrophoresis of 16S ribosomal DNA fragments enabling subsequent isolation in pure culture JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L42994|g867677 NB: Near-complete 16S rRNA sequence of an Arcobacter strain (epsilon proteobacterial subdivision), isolated from a hypersaline cyanobacterial mat BASE COUNT 421 a 291 c 400 g 323 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-AGU -GAAN-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-C GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG--U- CAG|-CU--A AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGG- UAA--CGU-G C-CUUC---A -AGAG-G-GG 421 -GAU-AA-CA G--------- ------AU-- G(-GAAA-)C -GUCU-G--C UAAAACC-CC 481 AU-AUG---- ---------- -------C-C UU-U--A-A- ---UGC-(-- --------GA 541 AA-------- -)-GUA---- UG-CA----A GG--GAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--CUU---- 661 ----GAAG-- AUC---G-|G CCUGU----- -AC|----AG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C AU(--UU-CG --)GU-GCGU AAA--CUCC| UNUU-AU-AU 1021 --AA-GAA-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UUA-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GA-UA- 1261 G-AU-AAG|U CAG---AAGU G-AAA-UC-C AA-UAG-C(- UU-A)A-CUA -UU-G-AAC- 1321 -UGCU-UUUG A-AAC-UGUC U-AUCUA-GA GUA-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-UCUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AGAAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-AA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGC -UA-UG---- ---------- 1681 -(CUC-GA)- ---------- ---------- ---------- -------CAU -AGCAG-UAA 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UC-UUG ACA-UA|--- ---------G ---UAAG--- -AA----CCA 1981 -UUU-A--(- GAGA-)-UAG -A-UGGG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| CUU-AU-AUA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--AUU- 2281 AG--UUGC-U AA-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-AA-CU-C- U-AAU-GA-G A-CU-G-CCU --AC(-G--C AA)-GUA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-G-UA -UA--CAAAG AGC-A-G-C- GA-UAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-U CUAA--AAAA -UA-C-CUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CGG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AGA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-CU-CC A-CAGU-GGA AUU-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gs.barnesi 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Geospirillum barnesii".. ACCESSION No information KEYWORDS No information. SOURCE "Geospirillum barnesii". ORGANISM "Geospirillum barnesii". REFERENCE 1 AUTHORS Lonergan,D.J., Jenter,H.L., Coates,J.D., Phillips,E.J.P., Schmidt,T.M. and Lovley,D.R. TITLE Phylogenetic analysis of dissimilatory Fe(III)-reducing bacteria JOURNAL J. Bacteriol. 178, 2402-2408 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41564|g1136550 BASE COUNT 396 a 294 c 391 g 329 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----U ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAAUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAUUU N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--CCU-G C-CCUU---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---ACU-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----AAGG-- AUG---G-|G GCUUU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-SCAA CSCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AA 1021 --GG-GAA-- G--------- ---------( -----A-UAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -U|-GU-AA- 1261 U-AU-AAG|U CAG---GAGU G-AAA-UC-C AA-CGG-C(- UC-A)A-CCG -UU-G-AAC- 1321 -UGCU-CUUG A-AAC-UGUU U-UACUA-GA AUA-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-AGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACUAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AU-UA UUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGC A--CA-CU-- -------A|G -UU-GU-UGC -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -UGCAG-UAA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGAG--- UG-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -GA--CAAAG AGA-C-G-C- GA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-G-CAA-A UCUUA-AAAC -CU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGAUAU)-G CUA-CGGUG- AAUAC-GUY- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- AU-UC-ACCC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GA-CC A-CGGU-GGG UUC-A..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sp. ORGANISM Campylobacter sp. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from An integrated study of phenotype and genotype JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Dewhirst,F.E., Paster,B.J., Fraser,G.J. and Fox,J.G. TITLE Phylogeny of 50 strains representing species in genera Campylobacter, Arcobacter, Helicobacter, and Wolinella as determined by comparison of 16S rRNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14632 legacy_attribute= CLO from sludge BASE COUNT 393 a 313 c 417 g 324 t 2929 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----U ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NAUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--CCU-G C-CCUU---U -AGUG-G-GG 421 -GAC-AA-CA G--------- ------AU-- G(-GAAA-)C -GUCU-G--C UAAUACC-CC 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AUC-(-- --------AU 541 AA-------- -)-GGU---- AA-GU----U GG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUA---- 661 ----AAGG-- AUG---G-|G GCUNU----- -AU|----GG U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UN- UGA------- -----CG-CC 781 U-AC-C-UN| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-C AU(--UU-CG --)GU-GUGU AAA--CUCC| UUUU-AU-AA 1021 --GG-GAA-- G--------- ---------( -----A-UAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -U|-GG-AA- 1261 A-UC-AAG|U CGA---GAGU G-AAA-UC-C AA-CGG-C(- UC-A)A-CCG -UU-N-AAC- 1321 -UGCU-CUCG A-AAC-UGGU U-ACCUA-GA AUA-----UG G-GA-GAGGU AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAGG- AAUA-CCGA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUACUG-- ---------- ---------- ---------G 1501 AAC--AC-UA UUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGC A--CA-CU-- -------A|G -UU-GU-UGC -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -UGCAG-UAA 1741 UG--CA---- --CU-(UAA- ---C)A-GA- UUAA-GUGUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-CC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGC -G-GGAG--- UG-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U N-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -GA--CAAAG AGA-C-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUUA-AAAC -CU-N-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGAUAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- AU-UC-ACCC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GA-CC A-CGGU-GGG UUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.ureoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides ureolyticus. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides ureolyticus. ORGANISM Bacteroides ureolyticus. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04321 BASE COUNT 416 a 305 c 390 g 334 t 2931 others ORIGIN 1 .......... .......... .......... ...UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGU-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGUCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGAU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGU- UAA--UCU-G C-CCUA---C -ACAG-A-GG 421 -AAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACC-UC 481 AU-ACU---- ---------- -------C-C UA-U--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-AU----A GG--GAAA-- ---G------ ---------- 601 --(------- --UCUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU NAA--CUCC| UUUU-AU-CA 1021 --GG-AAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AG-UGG-C(- UU-A)A-CCA -CU-N-AAC- 1321 -UGCU-UAGG A-AAC-UGAU A-GUCUA-GA GUA-----GG G-GA-GAGGU AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--CU-AA CUGACG-CUG AG-G------ -------CG- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAA -GGCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---UAAA--- -AA----CAU 1981 -CUA-A--(- GAGA-)-UUA -G-AAAG--- UG-------- -CUAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CUAG------ ----AA---| UUU-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---CU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGAC-A-UA -UA--CAGUA AGA-C-G-C- AA-UAU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCNA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGA- UC-UC-ACUC -GAA-G-CAG 3121 G-GAU-G-CU ----A----- ---------- ---------- -----(---- -AAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-UU-CC A-CAGU-GGA AUC-AG-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.hyolei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter hyoilei str. RMIT32A CCUG 33450 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter hyoilei str. RMIT32A CCUG 33450 (T). ORGANISM Campylobacter hyoilei. REFERENCE 1 AUTHORS Alderton,M.R., Korolik,V., Coloe,P.J., Dewhirst,F.E. and Paster,B.J. TITLE Campylobacter hyoilei sp. nov., associated with porcine proliferative enteritis JOURNAL Int. J. Syst. Bacteriol. 45, 61-66 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L19738 isolate_name= RMIT32A BASE COUNT 394 a 313 c 415 g 325 t 2929 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NNUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNNNN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UUU-A--(- GAGA-)-UAA -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.jejun5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni subsp. jejuni str. TGH 9011 ATCC 43431. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS Kim,N.W., Lombardi,R., Bingham,H., Hani,E., Louie,H., Ng,D. and Chan,V.L. TITLE Fine mapping of three rRNA operons on the updated genomic map of Campylobacter jejuni TGH9011 (ATCC 43431) JOURNAL J. Bacteriol. 175, 7468-7470 (1993) STANDARD No information REFERENCE 2 AUTHORS Kim,N.W., Gutell,R.R. and Chan,V.L. TITLE Complete sequences and organization of the rrnA operon from Campylobacter jejuni TGH9011 (ATCC43431) JOURNAL Gene 164, 101-106 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43431 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29326|g440400 (bases 264 to 1776) isolate_name= TGH 9011 BASE COUNT 417 a 323 c 429 g 344 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UUU-A--(- GAGA-)-UAA -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--GAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.jejun3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter jejuni str. VC79 NCTC 11392. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni str. VC79 NCTC 11392. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G .J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11392 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92307 (bases 1 to 286) legacy_attribute= biovar:biotype 2 isolate_name= VC79 BASE COUNT 243 a 185 c 244 g 205 t 3499 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ....A-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-S--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AN 541 NA-------- -)-GUU---- GA-GU----A GG--SAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUM-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCN -(NUCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UNA -GCA|-GCNA CGCC-GC-GU 961 G-G-AG-G-A U-NAC--A-C UU(--UU-NG --)GA-GCGU AAA--CUCC| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-NN-NGGU- A-CCU-N-AG G-AA--UNA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|.GA-U.. 1261 A.....CN|U CUC---UUAU G..GA-UC-U AA-UGC-N(. ..-.)..NCN -UN-N...C- 1321 -UGCU-U-GG A-AAC-UCAU A-GUCUA-GA GUG-----AG G-GA-GAGGC NGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G NAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGA-G-CUA AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CN-CU-- -------A|G -UU-GU-UGG -GA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...).GUCCG AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -N-AGUN-AU NNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACN-NN-C GUG--CUACN AUGGC-A-UA -UA--CNAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCNAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -NGCCAU)-G CUA-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.jejun4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04315 CCUG 11284 (T) = NCTC 11351 = CIP 702 = ATCC 33560 = DSM 4688 = LMG 6444 BASE COUNT 397 a 312 c 414 g 327 t 2926 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNNNN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.jejun2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter jejuni subsp. doylei CCUG 24567 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni subsp. doylei CCUG 24567 (T). ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Griffith ,P. and Stanley,J. TITLE Phylogenetic position and molecular sub-typing of Campylobacter helveticus derived by 16S rRNA gene analysis JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14630 BASE COUNT 397 a 312 c 414 g 322 t 2931 others ORIGIN 1 .......... .......... .......... .....UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 N-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NNUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGY- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCNA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 NU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GC)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.jejuni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter jejuni. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter jejuni. ORGANISM Campylobacter jejuni. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59298 ATCC 33560 = NCTC 11351 = CIP 702 = DSM 4688 = CCUG 11284 (T) = LMG 6444 BASE COUNT 396 a 306 c 407 g 328 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-N A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-NA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G NNAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAU.... .(....UA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GNCAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUN-AN-NG- ANN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sp. ORGANISM Campylobacter sp. REFERENCE 1 AUTHORS and Stanley,J. Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Griffith,P. TITLE helveticus derived by 16S rRNA gene analysis Phylogenetic position and molecular sub-typing of Campylobacter JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R. J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14631 BASE COUNT 395 a 309 c 416 g 327 t 2929 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- --UNNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGY- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C AA-CGG-C(- UU-A)A-CCG -UU-N-AAC- 1321 -UGCU-UGGG A-AAC-UGGU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--CA-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGN-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.laridi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter lari str. VC187. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter lari str. VC187. ORGANISM Campylobacter lari. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G .J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92310 (bases 1 to 359) NCTC 11352 (T) = ATCC 35221 = CCUG 23947 biol_source= herring gull cloacal swab, Larus argintatus isolate_name= VC187; WRI 3034/77 NB: ATCC & NCTC differ whether "laridis" vs. "lari" BASE COUNT 278 a 218 c 294 g 238 t 3348 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 NA-------- -)-GUU---- GA-GU----A GG--NAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UM- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(AUUG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCM-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUNN| UUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GN-NGGU- A-CCU-N-AG G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. ........C- -C--NAG--C --|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C AA-CGG-C(- UU-A)A-CCG -UN-N-AAC- 1321 -UGCU-UGGG A-AAC-UGGU A-AUCUA-GA GUG-----GG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGAS--CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UG-CU-- -------A|G -UU-GN-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCAUA C|C|G-CCU- G-GGGNGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-U-CA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGM-G- -GAGG-A-AG 2761 G-UG-UCG-G CG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CNAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GM-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCNAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCN-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.lari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter lari str. VC187. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter lari str. VC187. ORGANISM Campylobacter lari. REFERENCE 1 AUTHORS Krakowka,S. and Morgan,D.R. Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., TITLE gastritis Helicobacter acinonyx sp. nov., isolated from cheetahs with JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04316 CCUG 23947 = ATCC 35221 = NCTC 11352 (T) biol_source= herring gull cloacal swab, Larus argintatus isolate_name= VC187; WRI 3034/77 NB: ATCC & NCTC differ whether species is "laridis" vs. "lari" BASE COUNT 394 a 313 c 418 g 328 t 2923 others ORIGIN 1 .......... .......... .......... ....UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCGACU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGUUG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UN- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C AA-CGG-C(- UU-A)A-CCG -UU-G-AAC- 1321 -UGCU-UGGG A-AAC-UGGU A-AUCUA-GA GUG-----GG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sp.847 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sp. str. CLO11847. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sp. str. CLO11847. ORGANISM Campylobacter sp. REFERENCE 1 AUTHORS Hoeoek-Nikanne,J., Solin,M., Kosunen,T.U. and Kaartinen,M. TITLE Comparison of partial 16S rRNA sequences of different Helicobacter pylori strains, Helicobacter mustelae and a gastric campylobacter-like organism (GCLO) JOURNAL Syst. Appl. Microbiol. 14, 270-274 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55311 isolate_name= CLO11847 BASE COUNT 107 a 76 c 111 g 96 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... ......GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-NN (--CU----- ---------- ---------- 241 --------UG -)CU-NNAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -NCNA-G-AG 421 -GAC-NA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UA-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -GU|----AG U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-NC -ACUGG-A-A 841 (CUGA-GA-C NCG)--GUCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-NGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--U... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.helvet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter helveticus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter helveticus. ORGANISM Campylobacter helveticus. REFERENCE 1 AUTHORS Linton,D., Dewhirst,F.E., Clewley,J.P., Owen,R.J., Burnens,A .P. and Stanley,J. TITLE Two types of 16S rRNA gene are found in Campylobacter helveticus: analysis, applications and characterization of the intervening sequence found in some strains JOURNAL Microbiology 140, 847-855 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U03022|g436474 NCTC 12470 = ATCC 51209 BASE COUNT 398 a 307 c 407 g 327 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-GG 421 -GAC-AA-CA C--------- ------UU-- A(-GAAA-)U -GAGU-G--C UAAUACC-CC 481 AU-ACU---- ---------- -------C-C UA-U--U-U- ---AGC-(-- --------AU 541 AA-------- -)-GUU---- AG-AU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UU 1021 --GG-GAA-- G--------- ---------( -----AAUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UG-CU-- -------A|G -UU-GU-UGG -UA-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AGGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UAU-A--(- GAGA-)-UAU -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCCAU)-G UCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UGG 3121 A-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-UC-CC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG-U 3301 G----AGUC- GUAA-CA... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.upsali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter upsaliensis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter upsaliensis. ORGANISM Campylobacter upsaliensis. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J ., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14628 BASE COUNT 399 a 310 c 413 g 327 t 2927 others ORIGIN 1 .......... .......... .......... ...CCUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-GG 421 -GAC-AA-CA C--------- ------UU-- A(-GAAA-)U -GAGU-G--C UAAUACC-CC 481 AU-ACU---- ---------- -------C-C UA-U--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AG-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NNUU-CU-UU 1021 --GG-GAA-- G--------- ---------( -----AAUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-N-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-GUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UN-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UG-CU-- -------A|G -UU-GU-UGG -GG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -CUCAG-UAA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNNAUN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG AUA-UC|--- ---------C ---AACA--- -AA----UUC 1981 -UGU-A--(- GAGA-)-UAC -G-GAAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| UGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUU- 2281 AG--UUGC-U AA-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAC-G-CC -UA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UGG 3121 A-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-UC-CC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.coli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter coli str. VC80. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli str. VC80. ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G.J ., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92316 (bases 1 to 326) NCTC 11366 (T) = ATCC 33559 = CIP 7080 = LMG 6440 isolate_name= VC80; 1407 isolate_name= 1407 BASE COUNT 250 a 192 c 258 g 213 t 3463 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ......G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--SAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-RC -RCUGG-A-A 841 (CUGA-GA-C GCG)--GUCC -AGA-C-UCN -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UNA -GCA|-GCNA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--N-C UU(--UU-AG --)GA-GCGU AAA--CUNN| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-NGGU- A-CCU-N-AG G-AA--UAAG ---------C 1141 -NCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..CCA -UN-N-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC NGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UNAAA)-UCC -GU-AGAG-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGA-G-CUA AU-G------ -------CG- U-NAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UC-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------NAG -GGCNG-UAA 1741 UG--CU---- ---C-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CUA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... CG|G-CU--- -UGUCUA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCCG AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCNAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUN- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.coli83 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter coli str. 1407 CCUG 11283 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli str. 1407 CCUG 11283 (T). ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04312 biol_source= pig feces isolate_name= 1407 NB: seq from CCUG 11238? (=ATCC 33559; CIP 7080) BASE COUNT 401 a 310 c 409 g 328 t 2928 others ORIGIN 1 .......... .......... .......... .....UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGNA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UC-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNANN-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UUU-A--(- GAGA-)-UAA -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-G-CAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.coli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter coli str. VC80. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter coli str. VC80. ORGANISM Campylobacter coli. REFERENCE 1 AUTHORS Woese,C.R. TITLE A phylogenetic analysis of the purple bacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59073 ATCC 33559 = CIP 7080 = NCTC 11366 (T) = LMG 6440 isolate_name= VC80; 1407 isolate_name= 1407 BASE COUNT 377 a 295 c 386 g 321 t 2997 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAG -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACAA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-C--U-U- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- GA-GU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----AG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CU 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUUC ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------C|G -UU-GU-UGC -UC-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAG -GGCNG-UAA 1741 UG--CA---- --NC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -UUU-A--(- GAGA-)-UAA -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U NA)-GGN-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GNCAA-A UCUAU-AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sp.6AT 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sp. ORGANISM Campylobacter sp. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04318 biol_source= from library 40-6AT BASE COUNT 401 a 308 c 399 g 330 t 2938 others ORIGIN 1 .......... .......... .......... ......AUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ------CAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AGC-(-- --------AC 541 AA-------- -)-GUU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- --UNNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUNU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UNA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UN(--UU-CG --)GA-GCGU AAA--CUCC| NNUU-CU-UA 1021 --GG-GAA-- G--------- ---------( -----AACAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GGAN |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UNAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUN---UUGU G-AAA-UC-U AA-UGG-C(- UU-A)A-CCA -UU-N-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 CU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGC A--UA-CU-- -------C|G -UU-GU-UGC -UC-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAG -GGCAG-UAA 1741 UU--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAG--- -AA----CCU 1981 -CUU-A--(- GAGA-)-UAA -G-AGGG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCGGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-U A-CU-G-CCU --UC(-G--U GA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-AUG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.hyoin1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter hyointestinalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter hyointestinalis. ORGANISM Campylobacter hyointestinalis. REFERENCE 1 AUTHORS Wesley,I.V., Wesley,R.D., Cardella,M., Dewhirst,F.E. and Paster,B.J. TITLE Oligonucleotide probes for Campylobacter fetus and Campylobacter hyointestinalis based on 16S ribosomal RNA analysis JOURNAL J. Clin. Microbiol. 29, 1812-1817 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65009 BASE COUNT 404 a 306 c 398 g 335 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~...UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-YUYUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UYUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UAA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-GU-UG 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUN---UUGU G-AAA-UC-U AA-CAG-C(- UC-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-ANN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAU--- -AA----CAU 1981 -CUU-A--(- GAGA-)-UAA -G-AUAG--- UG-------- -CUUG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CAAG------ ----AA---| AUU-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.hyoin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter hyointestinalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter hyointestinalis. ORGANISM Campylobacter hyointestinalis. REFERENCE 1 AUTHORS Wesley,I.V., Wesley,R.D., Cardella,M., Dewhirst,F.E. and Paster,B.J. TITLE Oligonucleotide probes for Campylobacter fetus and Campylobacter hyointestinalis based on 16S ribosomal RNA analysis JOURNAL J. Clin. Microbiol. 29, 1812-1817 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65010 ATCC 35217 (T) = LMG 7817 BASE COUNT 404 a 305 c 399 g 338 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~...UAUGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUNUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UNAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- --UYYUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-GU-UG 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-CAG-C(- UC-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-ANN N-G-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---UAAU--- -AA----CAU 1981 -CUU-A--(- GAGA-)-UAA -G-AUAG--- UG-------- -CUUG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- CAAG------ ----AA---| AUU-AG-UGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.fetus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter fetus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus. ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS Wesley,I.V., Wesley,R.D., Cardella,M., Dewhirst,F.E. and Paster,B.J. TITLE Oligonucleotide probes for Campylobacter fetus and Campylobacter hyointestinalis based on 16S ribosomal RNA analysis JOURNAL J. Clin. Microbiol. 29, 1812-1817 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65012 ATCC 27374 (T) = LMG 6442 = NCTC 10842 BASE COUNT 406 a 307 c 402 g 332 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~..UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- NGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUNUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-CAG-C(- UA-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---AACU--- -AA----UCU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.fetus4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter fetus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus. ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04314|g174013 ATCC 27374 (T) = LMG 6442 = NCTC 10842 BASE COUNT 406 a 307 c 402 g 332 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- NGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUNUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-CAG-C(- UA-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---AACU--- -AA----UCU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.fetus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter fetus subsp. venerealis ATCC 19438 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus subsp. venerealis ATCC 19438 (T). ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Dewhirst,F.E., Paster,B.J., Fraser,G.J. and Fox,J.G. TITLE Phylogeny of 50 strains representing species in genera Campylobacter, Arcobacter, Helicobacter, and Wolinella as determined by comparison of 16S rRNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14633 ATCC 19438 (T) = NCTC 10354 BASE COUNT 397 a 302 c 396 g 328 t 2953 others ORIGIN 1 .......... .......... .......... .....UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NNNUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UN(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-CAG-C(- UU-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---AACU--- -AA----UCU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C AN)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU NNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCANCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.fetus1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter fetus subsp. venerealis ATCC 19438 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus subsp. venerealis ATCC 19438 (T). ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS Wesley,I.V., Wesley,R.D., Cardella,M., Dewhirst,F.E. and Paster,B.J. TITLE Oligonucleotide probes for Campylobacter fetus and Campylobacter hyointestinalis based on 16S ribosomal RNA analysis JOURNAL J. Clin. Microbiol. 29, 1812-1817 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M65011 ATCC 19438 (T) = NCTC 10354 BASE COUNT 397 a 302 c 396 g 328 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~...UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUA UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CN-NNNUU AAUAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UN- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UN(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUU---UUGU G-AAA-UC-U AA-CAG-C(- UU-A)A-CUG -UU-A-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG AUA-UC|--- ---------C ---AACU--- -AA----UCU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C AN)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU NNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCANCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.fetus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter fetus subsp. fetus str. VC78 CIP 5396. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter fetus subsp. fetus str. VC78 CIP 5396. ORGANISM Campylobacter fetus. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G .J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Organism information Culture collection: CIP 5396 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92313 (bases 1 to 307) isolate_name= VC78 BASE COUNT 274 a 202 c 263 g 220 t 3417 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGY---AAU -GU-AUAGU- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UMAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G ACUMU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CN-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCN -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUNUU G-CUCAAU-- GG-GG-(GAA A)-CCC-NGA AGCA|-GCNN CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCN ---------) ---------- 1081 ---------- ---------- UNGACNAGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -NCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. ........GU G-AAA-UC-U AA-CAG-C(- UC-A)A-ACU -GU-C-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGA-G-CUA AU-G------ -------CG- U-RAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UG--CA---- --C--(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCGCC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CNU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACN AUGGC-A-UA -UA--CAAUG AGA-U-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.mucosa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter mucosalis. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter mucosalis. ORGANISM Campylobacter mucosalis. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 631-639 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06978 BASE COUNT 389 a 307 c 405 g 326 t 2949 others ORIGIN 1 .......... .......... .......... .....UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-NNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CUUAUUUN AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCUA---U -GCAG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UNAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----N GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GCA---- 661 ----UAGG-- AUG---A-|G GCUNU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GGC-UN- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-NAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NNUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACCA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UA-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU NG-ACGGG-G -A-C-CC--G 1861 C-A--CN-AG CGGUGG-ANN N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------C ---AACA--- -AA----UUU 1981 -UGU-A--(- GAGA-)-UAC -G-GAAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| UGU-UG-AGA |---C|A--G 2161 GU-GC-UNCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C GA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.mucos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sp.. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sp. ORGANISM Campylobacter sp. REFERENCE 1 AUTHORS Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Griffith ,P. and Stanley,J. TITLE Phylogenetic position and molecular sub-typing of Campylobacter helveticus derived by 16S rRNA gene analysis JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Stanley,J., Linton,D., Burnens,A.P., Dewhirst,F.E., Owen,R.J., Porter,A., On,S.L. and Costas,M. TITLE Helicobacter canis sp. nov., a new species from dogs: An integrated study of phenotype and genotype JOURNAL J. Gen. Microbiol. 139, 2495-2504 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14629 biol_source= mucosalis-like isolate BASE COUNT 388 a 312 c 414 g 324 t 2938 others ORIGIN 1 .......... .......... .......... .....UAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ------CGA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CU-GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCUA---C -ACUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---AGC-(-- --------AC 541 AA-------- -)-GUU---- AA-GU----U GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AACUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGGG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AG-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G NURC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAA -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC N-N-GU-GGU -UUAAUU-CG -(ANNNNN-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------C ---AACA--- -AA----UUU 1981 -UGU-A--(- GAGA-)-UAC -G-AAAG--- UG-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----AA---| UGU-UG-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UA--UUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAA-UA-G A-CU-G-CCU --UC(-G--C GA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 UCANNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-UCG 3121 G-AAU-G-CU ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-C-U A-CC-GC-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.con288 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter concisus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter concisus. ORGANISM Campylobacter concisus. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 631-639 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06977 BASE COUNT 396 a 303 c 399 g 328 t 2950 others ORIGIN 1 .......... .......... .......... ...NAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGU-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ------CAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCUA---C -ACUA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-U--C-U- ---UAC-(-- --------AU 541 AA-------- -)-GUU---- AG-AU----A GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G GCUNU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC NGCGGUN-A) U-N-C-GGAG |-GGUG-C-- 1201 NAG-CGUUNC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCU-UGGG A-AAC-UGGU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UA-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGG....... ....GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUN AUA-UC|--- ---------U ---NACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--U NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CGU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-A-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AN-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.concis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter concisus str. Tanner 484 ATCC 33237 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter concisus str. Tanner 484 ATCC 33237 (T). ORGANISM Campylobacter concisus. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33237 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04322 ATCC 33237 (T) = LMG 7788 = FDC 484 isolate_name= Tanner 484 BASE COUNT 407 a 306 c 407 g 329 t 2927 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ------CAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCUA---C -ACUA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACU-CU 481 AU-ACU---- ---------- -------C-C UG-U--C-U- ---UAC-(-- --------AU 541 AA-------- -)-GUU---- AG-AU----A GG--GAAA-- ---G------ ---------- 601 --(------- --UUUUAU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G GCUNU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UN(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C UA-UGG-C(- UU-A)A-CCA -UA-G-AAC- 1321 -UGCU-UGGG A-AAC-UGGU A-AUCUA-GA GUN-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UA-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-A-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCG 3121 G-AAU-A-CU ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-AG-U-U A-CC-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.curC10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter curvus str. C10 Etoh. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter curvus str. C10 Etoh. ORGANISM Campylobacter curvus. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 631-639 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06976 isolate_name= C10 Etoh BASE COUNT 386 a 304 c 397 g 312 t 2977 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCCA---U -AGUG-G-AG 421 -GAC-AA-CA G--------- ------UN-- N(-GAAA-)C -GACU-G--C UAAUAC.... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....UCU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUG---A-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UG 1021 --GG-GAA-- G--------- ---------( -----AAAUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C AA-UGG-C(- UU-A)A-CCA -UU-G-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UA-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -NAA-GGAAU NG-ANNGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--C NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-URA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-YG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.curvus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter curvus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter curvus. ORGANISM Campylobacter curvus. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04313 ATCC 35224 (T) = VPI 9584 BASE COUNT 378 a 302 c 394 g 312 t 2990 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ------CAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCCA---U -AGUG-G-AG 421 -GAC-AA-CA G--------- ------UN-- N(-GAAA-)C -GACU-G--C UAAUACU-C. 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......U-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUG---A-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UNCG)--G GAG-GC-NG- C-N---NU-A 901 GGG-AAUAUU G-CUUAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--N-C UU(--UU-CG --)GA-GCGU AAA--CUCU| NUUU-CU-UG 1021 --GG-GAA-- G--------- ---------( -----AAAUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-N-AG G-AA--UAAG ---------C 1141 -ACCGGCU-N NCUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-C AA-UGG-C(- UU-A)A-CCA -UU-G-AAC- 1321 -UGCU-UGAG A-AAC-UGAU A-AUCUA-GA GUG-----AG G-GA-GAGGU AGA-U|GGAA 1381 UU-GGUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-ACCAGG- AAUA-CCCA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UC-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UG-AG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CUU -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-NC-UUU AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CN-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--C NN)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-C-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UNA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AN-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.show54 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter showae. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter showae. ORGANISM Campylobacter showae. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06974 BASE COUNT 406 a 309 c 398 g 328 t 2935 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--CUU-G C-CCAU---U -ACUA-A-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACC-UU 481 AU-ACU---- ---------- -------C-C GU-A--U-C- ---UAU-(-- --------AU 541 AA-------- -)-GUA---- GA-UA----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----AUGG-- AUA---G-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UG 1021 --GG-AAA-- G--------- ---------( -----AAUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-CG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CGA -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGG....... ....GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--C NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.show41 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter showae. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter showae. ORGANISM Campylobacter showae. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 631-639 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06975 CCUG 11641 = VPI 10279 BASE COUNT 403 a 309 c 399 g 329 t 2936 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--CUU-G C-CCAU---U -ACUA-A-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACC-UU 481 AU-ACU---- ---------- -------C-C GU-A--U-C- ---UAU-(-- --------AU 541 AA-------- -)-GUA---- GA-UA----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----AUGG-- AUA---G-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UG 1021 --GG-AAA-- G--------- ---------( -----AAUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-N-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-CG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CGA -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGG....... ....GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--C NA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNNAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.rectus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter rectus. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter rectus. ORGANISM Campylobacter rectus. REFERENCE 1 AUTHORS Etoh,Y., Dewhirst,F.E., Paster,B.J., Yamamoto,A. and Goto,N . TITLE Campylobacter showae sp. nov.: A species isolated from the human oral cavity JOURNAL Int. J. Syst. Bacteriol. 43, 631-639 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06973 BASE COUNT 391 a 305 c 396 g 314 t 2970 others ORIGIN 1 .......... .......... .......... ...UAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--UCU-G C-CCUA---C -ACNA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUAC.... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....UUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-RG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-UN- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UG 1021 --GG-AAA-- G--------- ---------( -----AAUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-CG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CGA -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CN-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-GU-N AA)-GGN-N- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUK--CUACA AUGGC-G-UA -UA--CAAUG AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-C-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.rectu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter rectus str. Tanner 371 ATCC 33238 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter rectus str. Tanner 371 ATCC 33238 (T). ORGANISM Campylobacter rectus. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33238 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04317 Former RDP Sids: Cam.rect38 ATCC 33238 (T) = NCTC 11489 = CCUG 20446 = FDC 371 isolate_name= Tanner 371 BASE COUNT 401 a 313 c 400 g 326 t 2936 others ORIGIN 1 .......... .......... .......... ...NAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUUAAGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUA AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--UCU-G C-CCUA---C -ACUA-G-AG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UNAUACU-CU 481 AU-ACU---- ---------- -------C-C UU-C--U-U- ---UAC-(-- --------AU 541 AA-------- -)-GUU---- AA-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UNUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G GCUAU----- -AU|----CG U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-CU-UG 1021 --GG-AAA-- G--------- ---------( -----AAUUA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 NAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAG-A UC-AAGAAG- AAUA-CCCA- 1441 -U-U-GC(-G AA-A)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------A|G -UU-GU-UGC -UU-CG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CGA -GGCAG-UAA 1741 UG--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-ANN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CN-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-GU-N AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GNAAA-U CUAU--AAAA -UA-C-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --C-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- NCU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.gracil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter gracilis str. WAL 6989 ATCC 33236 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter gracilis str. WAL 6989 ATCC 33236 (T). ORGANISM Campylobacter gracilis. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33236 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04320 Former RDP Sids: Bac.gracil biol_source= gingival sulcus isolate_name= WAL 6989 NB: former name Bacteroides gracilis renaming ref: IJSB 45(1): 145-152, Jan 1995 VanDamme et al. BASE COUNT 409 a 309 c 395 g 324 t 2939 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------AU UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUNUU AAAU------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--UCU-G C-CCCU---U -GCUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-U--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GAU---- AA-AU----C GG--GAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGGG-- AUG---A-|G ACUAU----- -AU|----CG U--AUCA-G- CUA-G---UC 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-G A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| NUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AAGAAG- AAUA-CCUA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CC-- -------G|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UC--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-ANN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUN AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -UAA)GAUG- ---------- GA-GCAAA-U CUAA--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACNGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUN -GAA-G-CGG 3121 G-AAU-G-CG ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-CG-C-U A-CC-CU-CC A-CAGU-GGA AUN-A..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.graci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter gracilis str. WAL 6989 ATCC 33236 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter gracilis str. WAL 6989 ATCC 33236 (T). ORGANISM Campylobacter gracilis. REFERENCE 1 AUTHORS Wexler,H.M., Molitoris,E., Reeves,D., McTeague,M., Summanen ,P., Duncan,J.F., Wilson,K.H. and Finegold,S.M. TITLE Sutterella wadsworthensis gen. nov., sp. nov., bile-resistant microaerophilic Campylobacter gracilis-like clinical isolates JOURNAL Int. J. Syst. Bacteriol. 46, 252-258 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33236 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37787|g854676 biol_source= gingival sulcus isolate_name= WAL 6989 BASE COUNT 405 a 311 c 396 g 320 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------AU UUAAGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU AAAU------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -AU-AUAGC- UAA--UCU-G C-CCCU---U -GCUG-G-AG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACU-CC 481 AU-ACU---- ---------- -------C-C UU-U--U-U- ---ACC-(-- --------AU 541 AA-------- -)-GAU---- AA-AU----C GG--GAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GCA---- 661 ----AGGG-- AUG---A-|G ACUAU----- -AU|----CG U--AUCA-G- CUA-G---UC 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-G A|-GGC-UA- UGA------- -----CG-CG 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-GU-UA 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GC -G|-GA-UU- 1261 A-UC-AAG|U CUC---UUGU G-AAA-UC-U AA-CGG-C(- UU-A)A-CCG -UU-A-AAC- 1321 -UGCU-UGGG A-AAC-UGAU A-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AAGAAG- AAUA-CCUA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CC-- -------G|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAC -GGCAG-UAA 1741 UC--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCC-A--(- GAGA-)-UGG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UC--AUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -UAA)GAUG- ---------- GA-GCAAA-U CUAA--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CGG 3121 G-AAU-G-CG ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-CG-C-U A-CC-CU-CC A-CAGU-GGA AUC-AG-CGC ACU-GGGG-U 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sputo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sputorum subsp. sputorum str. VC188. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum subsp. sputorum str. VC188. ORGANISM Campylobacter sputorum. REFERENCE 1 AUTHORS Romaniuk,P.J., Zoltowska,B., Trust,T.J., Lane,D.J., Olsen,G .J., Pace,N.R. and Stahl,D.A. TITLE Campylobacter pylori, the spiral bacterium associated with human gastritis, is not a true Campylobacter sp. JOURNAL J. Bacteriol. 169, 2137-2141 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M92319 (bases 1 to 326) isolate_name= VC188 BASE COUNT 241 a 177 c 226 g 198 t 3534 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... ......UU-- ---)------ ---------| --------C- G--CUA---- 661 ----UAAA-- AUG---A-|N GCUMU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UM- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-NCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU MAA--CUCC| NYUU-CU-UU 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CSA-A-AG G-AA--UAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .CUCU-UGGG A-AAC-UAUC U-AUCUA-GA GUA-----AG G-RA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AAGAGG- AAUR-CUUR- 1441 -U-U-GC(-G AA-G)GCRA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACA-CUA AU-G------ -------CG- U-RAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------N|G -UU-RU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -GGCAG-UAA 1741 UC--CA---- --C--(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|..CUG-- UCG-UCA|-G C-U---CR-U |GU-C(-GUG A)-GAURU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUC|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-UCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-NC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUN- AAUAC-GUU- CCN-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sputo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980 (T). ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum subsp. sputorum str. S17 ATCC 35980 (T). ORGANISM Campylobacter sputorum. REFERENCE 1 AUTHORS Van Camp,G., Van de Peer,Y., Neefs,J.M., Vandamme,P. and De Wachter,R. TITLE Structure of 16S and 23S ribosomal RNA genes in Campylobacter species: Phylogenetic analysis of the genus Campylobacter and presence of internal transcribed spacers JOURNAL Syst. Appl. Microbiol. 16, 361-368 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35980 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67775|g434937 (bases 418 to 1695) ATCC 35980 (T) = LMG 7795 isolate_name= S17 NB: The gene for the 16S ribosomal subunit RNA is interrupted with spacer nucleotides, from about position 185 in the submitted nucleotide stretch to about position 415. Neither the exact insertion point or the boundries of the RNA molecule itself were determined. BASE COUNT 425 a 301 c 398 g 336 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AGU -GAAC-NC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU-G C-CCCA---U -AGAG-A-GG 421 -AAC-AA-CA C--------- ------UU-- A(-GAAA-)U -GAGU-G--C UAAUACC-UC 481 AU-ACU---- ---------- -------C-C AA-U--U-A- ---UAC-(-- --------AU 541 AA-------- -)-GUU---- UA-AU----U GG--GAAAU- ---G...... .......... 601 ..(....... .....UUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUG---A-|G GCUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUCC| UUUU-CU-UU 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GU -G|-GA-UA- 1261 G-AU-AAG|U CUC---UUGU G-AAA-UC-U AG-UAG-C(- UU-A)A-CUA -CU-A-AAC- 1321 -UGCU-UGGG A-AAC-UAUC U-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AAGAGG- AAUA-CUUA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACA-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------G|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -GGCAG-UAA 1741 UC--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-CCU --UC(-G--U AA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cam.sputor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Campylobacter sputorum subsp. bubulus ATCC 33491. ACCESSION No information KEYWORDS No information. SOURCE Campylobacter sputorum subsp. bubulus ATCC 33491. ORGANISM Campylobacter sputorum. REFERENCE 1 AUTHORS Eaton,K.A., Dewhirst,F.E., Radin,M.J., Fox,J.G., Paster,B.J., Krakowka,S. and Morgan,D.R. TITLE Helicobacter acinonyx sp. nov., isolated from cheetahs with gastritis JOURNAL Int. J. Syst. Bacteriol. 43, 99-106 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04319 BASE COUNT 381 a 282 c 381 g 316 t 3016 others ORIGIN 1 .......... .......... .......... ...AAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AGU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAU -GU-AUAGC- UAA--UCU.. .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .....UUU-- ---)------ ---------| --------C- G--CUA---- 661 ----UGGG-- AUG---A-|G GCUAU----- -AU|----UG U--AUCA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-UA- UGA------- -----CG-CA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA AGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--A-C UU(--UU-CG --)GA-GCGU AAA--CUNC| NNUU-CU-UU 1021 --GG-GAA-- G--------- ---------( -----AAUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AA--UAAG ---------C 1141 -NCCGGCU-N ACUCC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUAC UC-GGAAUCA -CU-GGGC|G UAAA-GGAC- GCG-UAG-GU -G|-GA-UA- 1261 G-AU-AAG|U CUC---UUGU G-AAA-UC-U AG-UAG-C(- UU-A)A-CUA -CU-A-AAC- 1321 -UGCU-UGGG A-AAC-UAUC U-AUCUA-GA GUA-----AG G-GA-GAGGC AGA-U|GGAA 1381 UU-CUUGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-AAGAGG- AAUA-CUUA- 1441 -U-U-GC(-G AA-G)GCGA- -UCUGCUA-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACA-CUA AU-G------ -------CG- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU A--UA-CU-- -------G|G -UU-GU-UGC -UG-UG---- ---------- 1681 -(CUA-GU)- ---------- ---------- ---------- -------CAU -GGCAG-UAA 1741 UC--CA---- --CC-(UAA- ---C)G-GA- UUAA-GUAUA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-ANN N-N-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-AC-UUG AUA-UC|--- ---------U ---AACA--- -AA----UCA 1981 -UCU-A--(- GAGA-)-UAG -A-AGAG--- UG-------- -UCUN----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CAGA------ ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GC-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-AC-G |-UG--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAA-CA-G A-CU-G-CCU --UC(-G--U GA)-GGA-G- -GAGG-A-AG 2761 G-UG-UGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAAUA AGA-C-G-C- AA-UAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-U CUAU--AAAA -UA-U-GUC- CCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCCAU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGA- UU-UC-ACUC -GAA-G-CCC 3121 A-AAU-A-CC ----A----- ---------- ---------- -----(---- -AAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --U-GG-U-U A-UG-GU-CC A-CAGU-GGA AUC-AN-NG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.6-UNC 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.6 UNCULTURED_MAGNETOTACTIC_BACTERIA. ACCESSION No information KEYWORDS No information. SOURCE 2.14.6 UNCULTURED_MAGNETOTACTIC_BACTERIA. ORGANISM 2.14.6 UNCULTURED_MAGNETOTACTIC_BACTERIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CS981 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CS981.. ACCESSION No information KEYWORDS No information. SOURCE clone CS981. ORGANISM clone CS981. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81184|g1061215 BASE COUNT 372 a 348 c 479 g 294 t 2883 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGU-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAG-GC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GUGCU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UGA--CCU-A C-CUUA---A -GGUG-G-GG 421 -GAC-AA-CG G--------- ------CU-- A(-GAAA-)U -GGCU-G--C UAAUACC-GC 481 AU-AUC---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 CG-------- -)-GGA---- ---------- ----GAAA-- ---GGC---- ---------- 601 --(------- ---GCGA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----UUAG-- AUG---G-|G UCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UACC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAC-- GA-------- ---------( ------UUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -U|-GU-UU- 1261 U-GC-AAG|U CAG---GAGU G-AAA-UG-C UA-AGG-C(- UC-A)A-CCU -UG-G-AAC- 1321 -UGCU-CUUG A-AAC-UGUA A-GACUA-GA GUU-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- GAGA-CCGG- 1441 -A-G-GC(-G AA-A)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------G|G -UU-GU-UGC -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UGCGG-CAA 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----GCC 1981 -UAU-A--(- GAGA-)-UAU -A-AGCGU-- GC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- --GAGC---| GCA-GA--GA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-CU--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GG-A A-CU-G-CCG --GU(-GU-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAACG GGC-A-G-C- GA-AGG-G(G 2881 -UGA)CCUG- ---------- GA-GCCAA-U CCUAU-AAAA -CU-C-GUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCC -GAA-G-CCA 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CU A-CGGU-CAG AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Cs310 4376 bp RNA RNA 02-JUL-1998 DEFINITION uncultured magnetotactic. ACCESSION No information KEYWORDS No information. SOURCE uncultured magnetotactic. ORGANISM uncultured magnetotactic. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H. and Petersen,N . TITLE Phylogenetic diversity and identification of nonculturable magnetotactic bacteria JOURNAL Syst. Appl. Microbiol. 15, 116-122 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61606 library_source= uncultured magnetotactic bacterium NB: IDENT:general alpha purple BASE COUNT 192 a 157 c 239 g 127 t 3661 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGU-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAG-GC-CC (--GC----- ---------- ---------- 241 --------AA -)GG-GUGCU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UGA--CCU-A C-CUUG---A -GGUG-G-GG 421 -GAC-AA-CA G--------- ------CU-- A(-GAAA-)U -GGCU-G--C UAAUACC-GC 481 AU-AUC---- ---------- ---------- ---------- ---UCC-(-- --------UA 541 AG-------- -)-GGA---- ---------- ----UAAA-- ---GGC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GU--C- G--CCU---- 661 ----UAAG-- AUG---G-|G UCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UACC-GC-GU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAC-- GA-------- ---------( ------UUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- ACG-UAG-GC -G|-GU-CC- 1261 G-AU-AAG|U CAG---GAGU G-AAA-UG-C AA-AGG-C(- UC-A)A-CCU -UU-G-AAC- 1321 -UGCU-CUUG A-AAC-UGUU G-GACUU-GA GUU-----UG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCAA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-A)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CS93 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CS93.. ACCESSION No information KEYWORDS No information. SOURCE clone CS93. ORGANISM clone CS93. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81182|g1061216 BASE COUNT 362 a 348 c 490 g 294 t 2882 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -AAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAG-G--CC (--GC----- ---------- ---------- 241 --------AA -)GG--UGCU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UGA--CCU-A U-CCCG---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-UAG---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 UG-------- -)-GAG---- ---------- ----GAAA-- ---GCC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GG--C- G--CCA---- 661 ----UGGG-- AGG---G-|G UCCGC----- -GU|----AA G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UU 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUU-AG-UG 1021 --GG-AAC-- GA-------- ---------( ------UUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UA- 1261 A-GU-AAG|U CAG---GAGU G-AAA-GG-C CA-GGG-C(- UC-A)A-CCC -UG-G-GAC- 1321 -UGCU-CUUG A-AAC-UACU U-GACUG-GA GUU-----AG G-UA-GAGGG UGG-C|GGAA 1381 CU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGA G--UG-CU-- -------G|G -UU-GU-CGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCGG-UAA 1741 CG--AA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAAA 1921 A-CCUUA-CC UGC-GU-UUG A-C-AU|--- ---------C ---CUGAG-- -AA----CCU 1981 -GUC-A--(- GAGA-)-UGA -U-GGGGU-- GC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--G| CUC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-U A-CU-G-CCG --GU(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-A-UG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-GAGU --A--CAGAG AGG-GUG-C- GA-GAG-G(G 2881 -UGA)CCUG- ---------- GA-GCGAA-U CUCA--AAAA -GC-UCGUC- UCAGUUCAGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CU-UG-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCU--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAG-G-A G-CU-GU-CU A-CGGU-CGA GUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Cs103 4376 bp RNA RNA 02-JUL-1998 DEFINITION uncultured magnetotactic. ACCESSION No information KEYWORDS No information. SOURCE uncultured magnetotactic. ORGANISM uncultured magnetotactic. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H. and Petersen,N . TITLE Phylogenetic diversity and identification of nonculturable magnetotactic bacteria JOURNAL Syst. Appl. Microbiol. 15, 116-122 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61605 library_source= uncultured magnetotactic bacterium NB: IDENT:general alpha purple BASE COUNT 176 a 162 c 249 g 125 t 3664 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G-----C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-ACGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|--C--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- G-A--CCU-G C-CCUG---G -GGUG-G-GG 421 -GAU-AA-CA A--------- ------CU-- G(-GAAA-)C -GGUU-G--C UAAUACC-GC 481 AU-ACG---- ---------- ---------- ---------- ---CCU-(-- --------UA 541 CG-------- -)-AGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCC---- 661 ----UGGG-- AGG---G-|U UCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UGCC-GC-GU 961 G-G-GU-G-A A-UAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAC-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GC-UU- 1261 A-UC-AAG|U CAG---AAGU G-AAA-UC-C UC-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -UGCU-UUUG A-AAC-UGGU A-GGCUA-GA GUC-----CG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.TB12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone TB12.. ACCESSION No information KEYWORDS No information. SOURCE clone TB12. ORGANISM clone TB12. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81183|g1061217 BASE COUNT 351 a 361 c 495 g 282 t 2887 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-G--CC (--UU----- ---------- ---------- 241 --------CG -)GG--CGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- G-A--CCU-A U-CCAU---U -GGUG-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UAGG-- AGG---G-|U UCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAC-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 A-CU-AAG|U CAG---GAGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCU-CUUG A-AAC-UGGU A-GACUA-GA GUC-----CG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUA AG-G------ -------UG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-CGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCGG-CAA 1741 CG--AA---- --GU-(UAA- ---C)A-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -GUA-A--(- GAGA-)-UUA -C-GGGGU-- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--G| CAC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UCC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GG-G A-CU-G-CCG --GU(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-A-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG AGC-G-G-C- GA-UGG-G(G 2881 -CGA)CCCG- ---------- GA-GCGAA-U CUCG--UAAA -GC-UCGUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCC -GAA-U-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-CGGU-CGG AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.TB24 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone TB24.. ACCESSION No information KEYWORDS No information. SOURCE clone TB24. ORGANISM clone TB24. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81185|g1061218 BASE COUNT 361 a 351 c 488 g 290 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-G--CC (--UU----- ---------- ---------- 241 --------CG -)GG--UGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- U-A--CCU-G U-CCUA---U -GGUG-G-GG 421 -AAU-AA-CG U--------- ------UU-- A(-GAAA-)U -GAAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UAGG-- AGG---G-|G UCUGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UA 1021 --GG-AAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCCGUA-A) U-A-C-GGAG |-GGAG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U CAG---GAGU G-AAA-GC-C UC-AGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCU-UCUG A-AAC-UUCA A-GACUA-GA GUU-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UC-GU-CGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCGG-CGA 1741 CG--AA---- --GU-(UAA- ---C)A-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----UCU 1981 -CUC-A--(- GAGA-)-UGA -G-AGAGU-- GC-------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--G| CGC-AG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-GGA-GG-A A-CC-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGG-U-G-C- GA-AAG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CUCA--UAAA -GC-UCGUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCC -GAA-G-CCG 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-CGGU-CGG AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MP17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone MP17.. ACCESSION No information KEYWORDS No information. SOURCE clone MP17. ORGANISM clone MP17. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80996|g1061157 BASE COUNT 358 a 361 c 498 g 275 t 2884 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GG-CAG---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UCGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GCG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- U-A--CCU-G U-CCUA---U -GGUG-G-GG 421 -AAU-AA-CG U--------- ------UU-- A(-GAAA-)U -GAAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----AAGG-- AGG---G-|G UCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AG-(GAA A)-CUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCCGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 CAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UG- 1261 A-UC-AAG|U CAG---GAGU G-AAA-UC-C UC-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -UGCU-UCUG A-AAC-UGGU C-GACUU-GA GUA-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UC-GU-CGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCGG-CGA 1741 CG--AA---- --GU-(UAA- ---C)A-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------C ---CGCG--- -AA----UCC 1981 -CUC-A--(- GAGA-)-UGA -G-GGAG--- UG-------- --CCC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--G| CGC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-GGA-GG-A A-CC-G-CCG --GU(-GU-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAGAG GGG-G-G-C- GA-AGG-G(G 2881 -CGA)CCCG- ---------- GA-GCAAA-U CUCA--AAAA -GC-UCGUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UU-UG-ACCC -GAA-G-CCG 3121 G-CGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-CGGU-CGG AUU-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GGA-A)CC UGUGGC--UG GAUCACCUCC 3361 UUUN|N.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Cs308 4376 bp RNA RNA 02-JUL-1998 DEFINITION uncultured magnetotactic. ACCESSION No information KEYWORDS No information. SOURCE uncultured magnetotactic. ORGANISM uncultured magnetotactic. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H. and Petersen,N . TITLE Phylogenetic diversity and identification of nonculturable magnetotactic bacteria JOURNAL Syst. Appl. Microbiol. 15, 116-122 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61607 library_source= uncultured magnetotactic bacterium NB: IDENT:general alpha purple BASE COUNT 187 a 151 c 243 g 131 t 3664 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-ACGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- U-A--CCU-G U-CCUA---U -AGUG-G-GG 421 -AAU-AA-CG U--------- ------UU-- A(-GAAA-)U -GAAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----UAGG-- AGG---G-|G UCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 U-AU-AAG|U CAG---GAGU G-AAA-UC-C UC-AGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCU-UCUG A-AAC-UGUA U-GACUA-GA GUU-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CS106 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CS106.. ACCESSION No information KEYWORDS No information. SOURCE clone CS106. ORGANISM clone CS106. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81187|g1061213 BASE COUNT 188 a 157 c 252 g 135 t 3644 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-ACGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- U-A--CCU-G U-CCUA---U -GGUG-G-GG 421 -AAU-AA-CG U--------- ------UU-- A(-GAAA-)U -GAAC-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 CG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UAGG-- AGG---G-|G UCUGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-AAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 UAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CA- 1261 U-GU-AAG|U CAG---GAGU G-AAA-UC-C UC-AGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCU-UCUG A-AAC-UGUG U-GACUA-GA GUU-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 ACC--GA-AA CUGACG-CUA AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CS408 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CS408.. ACCESSION No information KEYWORDS No information. SOURCE clone CS408. ORGANISM clone CS408. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81188|g1061214 BASE COUNT 184 a 161 c 262 g 125 t 3644 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGGA- A-A--CCU-A U-CCUG---A -GGUA-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UAGG-- AGG---G-|G UCCAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GC- 1261 A-GC-AAG|U CAG---GAGU G-AAA-AU-C CA-GGG-C(- UU-A)A-CCC -GG-G-AAC- 1321 -UGCU-UUUG A-AAC-UGGU A-GGCUA-GA GUC-----CG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCAG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--GG-UA CUGACG-CUG AG-G------ -------CG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CS105 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CS105.. ACCESSION No information KEYWORDS No information. SOURCE clone CS105. ORGANISM clone CS105. REFERENCE 1 AUTHORS Spring,S., Amann,R., Ludwig,W., Schleifer,K.H., Schueler,D., Poralla,K. and Petersen,N. TITLE Phylogenetic analysis of uncultured magnetotactic bacteria from the alpha-subclass of proteobacteria JOURNAL Syst. Appl. Microbiol. 17, 501-508 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81186|g1061212 BASE COUNT 186 a 160 c 260 g 126 t 3644 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-AAC -GAAC-GC-- UGGC-GGC-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GC-AG-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGG-GU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGGA- A-A--CCU-A U-CCUG---A -GGUG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UAGG-- AGG---G-|G UCCAC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GG-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA UGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCCC| UUUC-AG-UG 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-GC- 1261 A-GC-AAG|U CAG---GAGU G-AAA-AU-C CA-GGG-C(- UU-A)A-CUC -UG-G-AAG- 1321 -UGCU-UUUG A-AAC-UGCG G-CACUA-GA GAC-----AG G-CA-GAGGG UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AAGA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCACCUG-- ---------- ---------- ---------G 1501 ACC--UG-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA. ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.MC1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. magnetotactic str. magnetotactic isolate MC-1 (DeLong). ACCESSION No information KEYWORDS No information. SOURCE str. magnetotactic str. magnetotactic isolate MC-1 (DeLong). ORGANISM str. magnetotactic. REFERENCE 1 AUTHORS DeLong,E.F., Frankel,R. and Bazylinski,D. TITLE Multiple evolutionary origins of magnetotaxis in bacteria JOURNAL Science 259, 803-806 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06456 isolate_name= magnetotactic isolate MC-1 (DeLong) isolate_name= MC-1 NB: IDENT:alpha purple bacteria, general BASE COUNT 297 a 254 c 382 g 245 t 3198 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GUGU---AAC -GC-GUGAU- G-A--CCUAC CCUAGG---A -UGUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CC--(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GGC---- ---------- 601 --(------- ---UUAG--- ---)------ ---------| ----GC--C- G--CAU---- 661 ----UUGG-- AGG---G-|G UCCKY----- -GU|----UG G--NUUACG- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UC-CA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA UGCC-AC-GU 961 G-A-AU-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--GUUC| UUUU-AG-UA 1021 --GG-GAA-- G--------- ---------( -----AUAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--AAAG ---------C 1141 -UCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGGG-C-- 1201 AAA-CGUUGU UC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 U-CU-AAG|C CAG---AAGU G-AAA-UC-U CG-GGG-C(- UC-A)A-CCU -CG-A-AAC- 1321 -UGCU-UUUG G-AAC-UGGA A-GACUA-GA AUC-----CG G-UA-GAGGA UGG-U|GGAA 1381 UU-CCCCGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-GGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CCAUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA UUGACG-CUG AG-G------ -------CG- C-GAAA-GU- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UA-GU-UGM -GN-G----- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- --------CC -UGCGG-CUA 1741 CG--AA---- --GU-(UAA- ---C)A-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UU-UUG ACA-UC|--- ---------C ---UUGG--- -AA-----CU 1981 -UAC-G--(- GAGA-)-CGU -A-GGGG--- UG-------- --CUU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----AA---| CCA-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --GU(-GU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-GG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GA -UA--CAGAG GGC-G-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------G CA-GCGAA-U CUCUU-AAAG -UC-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PLY16 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PLY16.. ACCESSION No information KEYWORDS No information. SOURCE clone PLY16. ORGANISM clone PLY16. REFERENCE 1 AUTHORS Rochelle,P.A., Will,J.A., Fry,J.C., Turley,C. and Weightman,A .J. TITLE Diversity of 16S ribosomal RNA gene sequences recovered from marine environments with particular reference to the alpha-proteobacterial 'SAR11 cluster JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13157|g535410 BASE COUNT 97 a 72 c 106 g 67 t 4034 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......AAC -GAAC-GU-- UGGC-GGC-A -CGU-CU--A ACAC-AUGCA A-GUC-GAAC 121 GA-GA-AA-C CC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G--AG (--CU----- ---------- ---------- 241 --------UG -)CU-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- GGG|-AC--- AGUG-GCAG- 361 -A-CG-GC-U UAGU---AAC -GC-GUGGG- U-A--UCU-A C-CUAG---A -GGUU-U-GG 421 -AAC-AA-CA A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-AA 481 AU-AUU---- ---------- ---------- ---------- ---CCC-(-- --------UA 541 AG-------- -)-GGG---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCU---- 661 ----UUAG-- AUG---A-|G CCCGC----- -GU|----CG G--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|A-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-GCC-UGA C...|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PVB13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pele's Vents. ACCESSION No information KEYWORDS No information. SOURCE Pele's Vents. ORGANISM Pele's Vents. REFERENCE 1 AUTHORS Moyer,C.L., Dobbs,F.C. and Karl,D.M. TITLE Phylogenetic diversity of the bacterial community from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii JOURNAL Appl. Environ. Microbiol. 61, 1555-1562 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15116|g710322 library_source= Pele's Vents Bacterium DNA BASE COUNT 371 a 320 c 446 g 319 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--G AAAC-AUGCA A-GUC-GAGC 121 G--GU-AA-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G--UC (--UU----- ---------- ---------- 241 --------CG -)GA--U--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- CUG|-AC--G AGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- U-A--UCU-G C-CUAU---G -AGUG-G-GG 421 -GAC-AA-CU U--------- ------UC-- G(-GAAA-)C -GAAA-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------- ---------- ---CUC-(-- --------UA 541 CG-------- -)-GAG---- ---------- ----CAAA-- ---GCAGGG- GA--CCU--- 601 --(------- ---UUCG--- ---)------ ----GGG--| -CCUUG--U- G--CUU---- 661 ----AUAG-- AUG---A-|G UCCGC----- -GU|----CA G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-UG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GGAU ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-U-GG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CCAC| UUUC-AA-UU 1021 --GG-GAA-- GA-A-GG-GA --UGA-GAA( U----UAAUA -----A---) UUCU-CU-GA 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A AUUUC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GAAA |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAUUUA -CU-GGGC|G UAAA-GAGA- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U UGG---AUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCA-UCCA A-AAC-UGGC G-GACUU-GA GUU-----CG G-GA-GGGGU AAG-C|GGAA 1381 UU-CCGUGU- GUA-GCA(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCUG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACC--GA-UA CUGACA-CUG AG-G------ -------AU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGU C--AA-CU-- -------A|G -CC-GU-UGC -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UGCAG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUUGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUAG--- -AA----GAC 1981 -UUU-A--(- GAGA-)-UAG -A-GUCG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CUA-AG-UGA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAACG AGU-U-G-C- GA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCUU-AAAG -UC-U-GUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--AU-UGG- UU-GC-ACCA -GAA-G-CCG 3121 C-CGG-G-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-A G-GC-GU-CU A-CGGU-GUG GUC-AG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.7-ENV 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.7 ENV.SAR121_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.14.7 ENV.SAR121_GROUP. ORGANISM 2.14.7 ENV.SAR121_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR121 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Mullins,T.D., Britschgi,T.B., Krest,R.L. and Giovannoni,S.J . TITLE Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities JOURNAL Limnol. Oceanog. 40, 148-158 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35462 BASE COUNT 61 a 58 c 67 g 36 t 4154 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UC-UC 781 U-AG-C-UG| -G-UCU--(G -AGA)-G-AC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GC-A 901 GGG-AAUAUU G-CGCAAU-- GA-GC-(GAA A)-GCC-UGA CGCA|-GCGA CACC-GC-GU 961 G-U-GG-G-A U-GAC--G-G AU(--CU-AG --)GU-UUGU AAA--CCAC| UUUC-AG-GA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-CA C-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC64 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68461 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 111 a 132 c 177 g 77 t 3879 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCAGG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-CCUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUC---G -GCAU-C-GG 421 -GAU-AG-CC C--------- ------GG-- G(-GAAA-)C -CCGG-A--U UAAUACC-GG 481 AU-AGC---- ---------- -------C-U CC-G--A-A- ---GCC-(-- --------UU 541 CG-------- -)-GGC---- GU-CG----G AG--AAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUUC--C- G--GCU---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GG|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-GG 1021 --GG-GAC-- GA-AG-C-CA --CNC--GG( GU---UAAUA ----GC---) CCAG-AG-GN 1081 ---------- -------N-- N-NA-CGGU- A-CCU-C-CA G-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC66 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68458 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 106 a 130 c 167 g 79 t 3894 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUG-GAGC 121 G--------- -----ACGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGCAA---- ---|------ AGCC-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCG---A -UGAU-U-GG 421 -GAC-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGG-G--C UAAUACC-AA 481 AU-GUG---- ---------- -------C-C CU-C--C-G- ---ACC-(-- --------GU 541 AA-------- -)-GGN---- CG-NU----G GG--GAAA-- ---GGAAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCUC--C- G--CAU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GC-GC-(GNA A)-GCG-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UU 1021 --GG-GAC-- GA-AG-C-UU --CG--CCG( GU---GAAUA ----GC---) CGGC-CG-AA 1081 ---------- -------G-- U-GA-CGGU- A-CCU..... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.14.8-STR 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.14.8 STR.DELTA1_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.14.8 STR.DELTA1_ISOLATE. ORGANISM 2.14.8 STR.DELTA1_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.delta1 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Teske,A.P., Wawer,C., Muyzer,G. and Ramsing,N.B. TITLE Distribution of sulfate-reducing bacteria in a stratified water column as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments JOURNAL Appl. Environ. Microbiol. 62 (4), 1405-1415 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40767|g727150 legacy_attribute= biovar:unnamed, delta purple bacterium BASE COUNT 130 a 115 c 169 g 96 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .....C-AG- C-A---GU-N 901 NNG-AAUAUU N-CNCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CU(--UN--G --)GG-UUGU AAA--GCUC| UGUC-NG-GA 1021 --GG-AAC-- GA-A-AC-GC --CAG-UGG( U----UAACA -----C---) CCUG-CU-GG 1081 ---------- -------A-A U-GA-CUGU- A-CCN-N-NN G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 AAG-CGUUGU UC-GGAAUUA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CGG---GUGU G-AAA-GC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCA-UCCG A-UAC-UGUC U-AACUU-GA GUA-----UG G-GA-GAGGG AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CCC--AU-UA CUGACG-CUG AG-G------ -------NN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AG-CU-- -------A|G -GN-GU-UNG -A........ ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 ....GA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G C..)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.15-FUSOB 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.15 FUSOBACTERIA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.15 FUSOBACTERIA_AND_RELATIVES. ORGANISM 2.15 FUSOBACTERIA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stb.monili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptobacillus moniliformis. ACCESSION No information KEYWORDS No information. SOURCE Streptobacillus moniliformis. ORGANISM Streptobacillus moniliformis. REFERENCE 1 AUTHORS Hofmann,N. and Wullenweber,M. TITLE The Phylogenetic Position of Streptobacillus moniliformis based on 16S rRNA sequence studies JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35305|g516160 BASE COUNT 435 a 281 c 427 g 342 t 2891 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-AUC-U-AU 121 G--UA----- -----UGAAA U--------- ---------- ---------- ---------- 181 ---------- ---------- ----GUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AUAGAC---- ---|-UA--- CAUG-GUGG- 361 -A-CU-GG-U GAGU---AAC -GU-GUAAA- GAA--CUU-A C-CUCU---U -AGAC-U-GG 421 -GAU-AA-CC A--------- ------UUA- G(-GAAA-)U -GAUG-G--A UAAUACU-AG 481 AU-AUU---- ---------- -------A-U UA-G--U-AG ---UAG-(-- --------GC 541 AU-------- -)-CUA---C UA-UU----A AU--GAAA-- ---GG----- ---------- 601 --(------- ---AGAGA-- ---)------ ---------| -----U--U- G--CUA---- 661 ----AGAG-- AGA---G-|C UUUGC----- -AU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCC--(G -AGA)--GGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GAA A)-CUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GUGC| UUUC-AG-UA 1021 --GG-GAA-- GA-A--G--- ---------( ------AAG- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|U UAAA-GGGC- AUC-UAG-GC -G|-GU-CU- 1261 A-AC-AAG|U UGA---AGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-UACA A-AAC-UGUC A-GACUA-GA GUA-----CU G-GA-AAGGU GGG-U|GGAA 1381 CU-ACACGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-UGUAGG- AAUG-CCGA- 1441 -U-G-AU(-G AA-G)AUAA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GA-AA CUGACG-CUG AA-G------ -------UG- C-GAAA-CG- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------G|G -GU-GU-GGG -GG-UG---- ---------- 1681 -(-UG-A-)- ---------- ---------- ---------- -------AGC -CUCUG-UGC 1741 CG--AA---- --GC-(AAA- ---A)G-CG- AUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGG--- -AA----UAA 1981 -GAU-G--(- GAAG-)-CAU -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----AA---| CCG-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GA AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAU-GA-A A-CU-G-CCC --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU UCU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAAAG AGG-A-G-C- UA-AGC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-U CUUUC-AAAG -CU-A-CUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UAG- UU-GC-ACCU -GAA-G-UUA 3121 C-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-GU-AC-CU A-AGGU-GUG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stb.monil2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptobacillus moniliformis str. ANL 370-1. ACCESSION No information KEYWORDS No information. SOURCE Streptobacillus moniliformis str. ANL 370-1. ORGANISM Streptobacillus moniliformis. REFERENCE 1 AUTHORS Hofmann,N. and Wullenweber,M. TITLE The Phylogenetic Position of Streptobacillus moniliformis based on 16S rRNA sequence studies JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35304|g515356 isolate_name= ANL 370-1 BASE COUNT 437 a 279 c 427 g 342 t 2891 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-AUC-U-AU 121 G--UU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUAUGUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAGAU AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GA- ---|-GA--- CAUG-GUGG- 361 -A-CU-GG-U GAGU---AAC -GU-GUAAA- GAA--CUU-A C-CUCU---U -AGAC-U-GG 421 -GAU-AA-CC A--------- ------UUA- G(-GAAA-)U -GAUG-G--A UAAUACU-AG 481 AU-AUU---- ---------- -------A-U UA-G--A-AG ---UGG-(-- --------GC 541 AU-------- -)-CUA---C UU-UU----A AU--GAAA-- ---GG----- ---------- 601 --(------- ---AGAGA-- ---)------ ---------| -----U--U- G--CUA---- 661 ----AGAG-- AGA---G-|C UUUGC----- -AU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCC--(G -AGA)--GGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GAA A)-CUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GUGC| UUUC-AG-UA 1021 --GG-GAA-- GA-A--G--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|U UAAA-GGGC- AUC-UAG-GC -G|-GU-CU- 1261 A-AC-AAG|U UGA---AGGU G-AAA-AG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UCU- 1321 -UGCC-UACA A-AAC-UGUC A-GACUA-GA GUA-----CU G-GA-AAGGU GGG-U|GGAA 1381 CU-ACACGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-UGUAGG- AAUG-CCGA- 1441 -U-G-AU(-G AA-G)AUAA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GA-AA CUGACG-CUG AA-G------ -------UG- C-GAAA-CG- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------G|G -GU-GU-GGG -GG-UA---- ---------- 1681 -(-UU-A-)- ---------- ---------- ---------- -------AGC -CUCUG-UGC 1741 CG--AA---- --GC-(AAA- ---A)G-CG- AUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UA|--- ---------C ---UCGG--- -AA----UAA 1981 -GAU-G--(- GAAG-)-CAU -C-UUAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CC--AGGAUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GA AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAU-GA-A A-CU-G-CCC --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU UCU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAAAG AGG-A-G-C- UA-AGC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-U CUUUA-AAAG -CU-A-CUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UAG- UU-GC-ACCU -GAA-G-UUA 3121 C-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-GU-AC-CU A-AGGU-GUG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpt.microb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptotrichia microbii.. ACCESSION No information KEYWORDS No information. SOURCE Leptotrichia microbii. ORGANISM Leptotrichia microbii. REFERENCE 1 AUTHORS Hanff,P.H., Spiegel,C.A., Wilson,K.H. and Moore,L.H. TITLE Leptotrichia microbii sp. nov. a new etiology of post-partum and neonatal bacteremia JOURNAL Clin. Infect. Dis. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37789|g854685 BASE COUNT 437 a 269 c 421 g 327 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-GAU -AAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-G-AU 121 G--------- -----AUGGG AG-------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------A AGAAGU---- ---|------ CAUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GU-GUAAA- GAA--CUU-A C-CAUA---U -AGAC-U-GG 421 -GAU-AA-CA G--------- ------AG-- G(-GAAA-)C -UUCU-G--A UAAUACU-GG 481 AU-AA----- ---------- -------G-U UA-G--U--A ---GUA-(-- --------GC 541 AU-------- -)-UAC---U AA-GU----A AU--GAAAG- ---GUA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UA--C- G--CUA---- 661 ----UAUG-- AGA---G-|C UUUGC----- -AU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GCA A)-CUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-AG --)GA-CUGU AAA--ACAC| UUUU-AG-UA 1021 --GG-GAA-- GA-A--A--- ---------( ------GAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|U UAAA-GGGC- AUC-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U UGA---AGGU G-AAA-AC-C UG-UGG-C(- UC-A)A-CCA -UA-G-GCU- 1321 -UGCC-UACA A-AAC-UGUA U-AACUA-GA GUA-----CU G-GA-AAGGU GGG-U|GGAA 1381 CU-ACACGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-UGUAGG- AAUG-CCGA- 1441 -U-G-AU(-G AA-G)AUAA- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--GC-AA CUGACG-CUG AA-G------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------G|G -GU-GU-GGG -GA-UU---- ---------- 1681 -(-CG-A-)- ---------- ---------- ---------- -------AGU -CUCUG-UGC 1741 CG--AA---- --NC-(AAA- ---A)G-CG- AUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UC|--- ---------C ---UCCG--- -AA----GAG 1981 -CAU-A--(- GAAG-)-UAU -G-CUUG--- UG-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CG--GAGAGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-U(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GA AACCC-CU-A |-UC--AUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAU-GA-A A-CU-G-CCU --AC(-GA-A GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG AGA-A-G-C- UU-UGU-R(G 2881 -CGA)UACA- ---------- UG-NCNAN-A CUAAG-AAAG -CU-A-UUC- UUAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GU-GAA-(UC -AGCAAU)-G UCA-CGGUG- AAKAC-GUUC NUC-GGG-UN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGU- UU-GC-ACCU -GAA-A-UUA 3121 C-UGG-C-CU -AA-CUG--- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GG--GG-G-A G-GU-AC-UG A-AGGU-GUG GAU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sbd.termit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sebaldella termitidis. ACCESSION No information KEYWORDS No information. SOURCE Sebaldella termitidis. ORGANISM Sebaldella termitidis. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58678 Former RDP Sids: Bac.termit ATCC 33386 (T) = NCTC 11300 = VPI 14464 NB: former name "Bacteroides" termitidis BASE COUNT 434 a 293 c 439 g 319 t 2891 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUGAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-G-AU 121 G--------- -----AGAAG A--------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------AGA GGGUAU---- ---|------ CAUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CAUA---U -GGAC-A-GG 421 -GAU-AA-CC G--------- ------AU-- G(-GAAA-)C -GACG-G--A UAAGACC-UG 481 AU-AUA---- ---------- -------A-U GA-A--U-UA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U GA-UU----C AU--GAAA-- ---A------ ---------- 601 --(------- ---GCAA--- ---)------ ---------| --------U- G--CCA---- 661 ----UAUG-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CAACC-A A|-GGC-GA- UGA------- -----UA-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -UUA-C-UCU -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AG-(GUA A)-CUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UUUA-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--UAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|A UAAA-GGGC- AUC-UAG-GC -G|-GG-GU- 1261 U-UC-AAG|U CGA---CGGU G-AAA-AC-U AG-UGG-C(- UC-A)A-CCA -UU-A-GCU- 1321 -UGCC-GACG A-AAC-UGAA A-UUCUA-GA GUA-----UU G-GA-AAGGU GGG-C|GGAA 1381 CU-ACAUGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UA-UGUAGG- AAUG-CCGA- 1441 -U-G-AC(-G AA-G)GUAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACA--AA-AA CUGACG-CUG AA-G------ -------UG- C-NAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGU U--CA-CU-- -------G|G -GU-GU-GGG -CG-AG---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------AUC -GUCUG-UGC 1741 CG--AA---- --GC-(AAA- ---U)G-CG- AUAA-GUGAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UC|--- ---------U ---CCGG--- -AA----UUA 1981 -GGU-A--(- GAGA-)-UAC -U-UAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CCG-GA-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCU --GC(-GA-A GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAAAG AGA-A-G-C- AA-AAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CAAG--AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UU-GC-ACCU -GAA-A-UUG 3121 C-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-G-A A-GU-AC-UG A-AGGU-GUG GUA-AG-CG- AUN-GGG... 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpt.buccal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptotrichia buccalis. ACCESSION No information KEYWORDS No information. SOURCE Leptotrichia buccalis. ORGANISM Leptotrichia buccalis. REFERENCE 1 AUTHORS Dewhirst,F. JOURNAL Unpublished (1993) STANDARD No information COMMENTS ATCC 14201 = NCTC 10249 (T) BASE COUNT 363 a 289 c 418 g 272 t 3034 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUCGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-UU 121 G--GC----A GG---AAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUG-UG (--CU----- ---------- ---------- 241 --------NG -)CA-CAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCU|AGC--N NNAG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUG---C -AGAG-A-GG 421 -GAU-AA-CA G--------- ------AC-- G(-GAAA-)C -GACU-G--A UAAUACC-UG 481 AU-ANA---- ---------- -------A-U UG-C--C-AG ---CAC-(-- --------GC 541 AU-------- -)-GUGC--C CG-GC----A AU--GAAA-- ---A------ ---------- 601 --(------- ---GNNA--- ---)------ ---------| --------U- G--CUG---- 661 ----CAGG-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UCACC-N A|-GGC-GA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GUGC| UUUC-AG-CA 1021 --GG-GAA-- GA-A--G--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|A UAAA-GGGC- AUC-UAG-GC -G|-GC-CA- 1261 G-AC-AAG|U CUG---GGGU G-AAA-AC-U UG-CGG-C(- UC-A)A-CCG -CN-A-GCC- 1321 -UGCC-CUGG A-AAC-UGUU U-GGCUA-GA GUG-----CU G-GA-GAGGU GGA-C|GGAA 1381 CU-GCACGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-UGCAGG- AAUG-CCGA- 1441 -U-G-AU(-G AA-G)AUAG- -UUCACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AA-G------ -------UG- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -GU-GU-GGG -CA-UG---- ---------- 1681 -(-AA-G-)- ---------- ---------- ---------- -------AGU -GUCCG-UGC 1741 CG--AA---- --GC-(UAA- ---U)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UC|--- ---------C ---UACG--- -AA----UGC 1981 -CUG-U--(- GAGA-)-ACA -G-GCAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGU-AGGAGA |---C|A--G 2161 GU-GN-NGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCA- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCU --GC(-GA-A GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- AA-AAC-G(G 2881 -UNA)CGUU- ---------- UA-GCCAA-U CUUU--AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lpt.bucca2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leptotrichia bucallis.. ACCESSION No information KEYWORDS No information. SOURCE Leptotrichia bucallis. ORGANISM Leptotrichia bucallis. REFERENCE 1 AUTHORS Hanff,P.H., Spiegel,C.A., Wilson,K.H. and Moore,L.H. TITLE Leptotrichia microbii sp. nov. a new etiology of post-partum and neonatal bacteremia JOURNAL Clin. Infect. Dis. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37788|g854684 BASE COUNT 389 a 322 c 449 g 296 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-UU 121 G--GC----R -----AAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CCU|AGC--- CAAG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUG---C -AGAC-A-GG 421 -GAU-AA-CA G--------- ------AC-- G(-GAAA-)C -GACU-G--A UAAUACC-UG 481 AU-AYA---- ---------- -------A-U UG-C--C-AG ---CAC-(-- --------GC 541 AU-------- -)-GUGC--C CG-GC----A AU--GAAA-- ---A------ ---------- 601 --(------- ---GUGA--- ---)------ ---------| --------U- G--CUG---- 661 ----CAGG-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA N)-CCC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GUGC| UUUC-AG-CA 1021 --GG-GAA-- GA-A--G--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|A UAAA-GGGC- AUC-UAG-GC -G|-GC-CA- 1261 G-AC-AAG|U CUG---GGGU G-AAA-AC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCC- 1321 -UGCC-CUGG A-AAC-UGUU U-GGCUA-GA GUG-----CU G-GA-GAGGU GGA-C|GGAA 1381 CU-GCACGA- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UG-UGCAGG- AAUG-CCGA- 1441 -U-G-AU(-G AA-G)AUAG- -UUCACUG-- ---------- ---------- ---------G 1501 ACG--GN-AA CUGACG-CUG WA-G------ -------UG- C-GVAA-RC- UG-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CCA- C-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------G|G -GU-GU-GGG -CA-UG---- ---------- 1681 -(-AA-G-)- ---------- ---------- ---------- -------AGU -GUCCG-UGC 1741 CG--AA---- --GC-(UAA- ---U)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GKC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UC|--- ---------C ---UACG--- -AA----UGC 1981 -CUG-U--(- GAGA-)-ACA -G-GCAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGU-WG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCU --GC(-GA-A GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -NA--CAAAG AGC-U-G-C- AA-AAC-G(G 2881 -UAA)CGUU- ---------- UA-GCCAA-U CUUU--AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUUC CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGU- UU-GN-ACCU -GAA-G-CCG 3121 C-CGG-U-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-GC-GU-CU A-AGGU-GUG GAU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAAGUCG... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prg.maris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionigenium maris str. 10succ1 DSM 9537 (T). ACCESSION No information KEYWORDS No information. SOURCE Propionigenium maris str. 10succ1 DSM 9537 (T). ORGANISM Propionigenium maris. REFERENCE 1 AUTHORS Janssen,P.H. and Liesack,W. TITLE Succinate decarboxylation by Propionigenium maris sp. nov., a new anaerobic bacterium from an estuarine sediment JOURNAL Arch. Microbiol. 164 (1), 29-35 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9537 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84049|g1182031 biol_source= anoxic intertidal sediment isolate_name= 10succ1 BASE COUNT 371 a 311 c 435 g 309 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-G-AC 121 U--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAU-UCA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGAUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUC---U -AGAC-U-GG 421 -GAC-AA-CU G--------- ------UU-- G(-GAAA-)C -GACA-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-G--A-UU ---CUC-(-- --------GC 541 AU-------- -)-GAG---G AA-CU----U AU--GAAA-- ---GG----- ---------- 601 --(------- --CUAUAU-- ---)------ ---------| -----G--C- G--CUA---- 661 ----GAGG-- AGA---G-|C UUUGC----- -GU|----GC C--AUUA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UG-GC 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AC-(CAA A)AGUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUGC| UUUC-AG-GU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-C-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AUU- 1321 --GCG-UUGG A-AAC-UGGA A-GGCUA-GA GUA-----UC A-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-U-GG(-G AA-G)CCAG- -CUCACUG-- ---------- ---------- ---------G 1501 AUG--AA-UA CUGACG-CUG AA-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|A -GU-GU-GGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCCG-UGC 1741 UC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUGAU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---UCAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- -CCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUGG------ ----AA---| CUG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAGAG AGU-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAG -UC-G-UUC- UUAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A U-GU-UC-CU A-AGGU-GUG AUU-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prg.modest 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionigenium modestum.. ACCESSION No information KEYWORDS No information. SOURCE Propionigenium modestum. ORGANISM Propionigenium modestum. REFERENCE 1 AUTHORS Both,B., Kaim,G., Wolters,J., Schleifer,K.H., Stackebrandt,E. and Ludwig,W. TITLE Propiogenium modestum: a separate line of descent within the eubacteria JOURNAL FEMS Microbiol. Lett. 78, 53-58 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54275 BASE COUNT 387 a 334 c 468 g 327 t 2860 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNNAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-G-AC 121 U--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAU-UCA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGAUA GU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUC---U -AGAC-U-GG 421 -GAC-AA-CU G--------- ------UU-- G(-GAAA-)C -GACA-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GG-A--C-CC ---CUG-(-- --------GC 541 AU-------- -)-CUG---G GG-AC----U AU--GAAA-- ---GG----- ---------- 601 --(------- --CUAUAU-- ---)------ ---------| -----G--C- G--CUA---- 661 ----GAGG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-AC-(CAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UUUC-AG-CA 1021 --GG-GAA-- GA-A--G--- ---------( ------CAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-CU- 1261 A-UU-AAG|U CUG---AUGU U-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AUU- 1321 --GCG-UUGG A-AAC-UGGU A-GGCUA-GA GUA-----UC A-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUCACUG-- ---------- ---------- ---------G 1501 AUG--AA-UA CUGAGC-CUG AA-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-CU-- -------A|A -GU-GU-GGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCCG-UGC 1741 UC--AA---- --SS-(UAA- ---C)G-CG- AUAA-GUGAU C|C|G-CCU- GCGGGAGUAC 1801 GAC-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-C -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|--- ---------C ---CAAG--- -AA----CUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUGG--- UG-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----AA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCU --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAGAG AGU-C-G-C- GA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CUCAG-AAAG -CU-G-UUC- UUAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CG-UG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A U-GU-UC-CU A-AGGU-GUG AUU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.perfoe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium perfoetens. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium perfoetens. ORGANISM Fusobacterium perfoetens. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58684 ATCC 29250 = VPI 11077 (T) BASE COUNT 398 a 289 c 415 g 327 t 2947 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUAAUGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAU-UC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GAUAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- GGUG-NCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- GAA--CUU-G C-CUUG---U -AGUC-U-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A AG-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUA---- 661 ----CGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-G UC(--UU-AG --)GA-UUGU AAA--GUGC| NUUC-AA-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------CAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-UA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGC- GUC-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC N-AACUA-GA GUA-----UC G-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-A-GA(-G AA-G)UCAG- -CUCACUG-- ---------- ---------- ---------G 1501 ACG--AA-UA CUGACA-CUG AA-G------ -------CG- C-NNAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGA U--NA-CU-- -------A|A -GC-GU-CGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCGG-CNC 1741 UC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-NU-UUG ACA-UC|--- ---------C ---UAGG--- -AA----UGA 1981 -GAA-A--(- GAGA-)-UUU -C-UUAG--- UG-------- -CUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGAG------ ----AA---| CCU-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAGAG AGA-A-G-C- AA-UUU-C(G 2881 -CGA)GAAG- ---------- GA-GCAAA-U CUCAG-AAAG -CU-G-UUC- GUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-NC UUGUA----C 3061 ACACCGNNC- NUC-ACA--- --CCA-CGAG A--GU-UGA- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGANG-G-A U-GC-UC-CG A-GGGN-GUG GUU-AG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.morti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium mortiferum. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium mortiferum. ORGANISM Fusobacterium mortiferum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS ATCC 25557 (T) = VPI 4123A BASE COUNT 382 a 301 c 430 g 325 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~NAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--A--U GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUG---C -AGUC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GU-G--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A UU-CA----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----CAGN-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- UGA------- -----UA-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAC-- GA-A--G--- ---------( ------UAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC N-AACUA-GA GUA-----CU G-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCNA- 1441 -U-G-GG(-G AA-G)CCAG- -CCCACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CN--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UAAG--- -AA----AUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUUG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGN------ ----NA---| CUU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GC-UC-CG A-GGGU-GUG AUU-AG-CG- ANU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.rectum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium rectum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium rectum. ORGANISM Clostridium rectum. REFERENCE 1 AUTHORS Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., TITLE genera and eleven new species combinations The Phylogeny of the genus Clostridium: Proposal of five new JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77850|g572663 BASE COUNT 394 a 318 c 453 g 340 t 2871 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-UAGC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--A--U GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUG---C -AGUC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GU-G--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A UU-CA----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----CAGG-- AG---AG-|C UUUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--U--CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAC-- GA-A--G--- ---------( ------UAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GU-G-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUCGUAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AACUGUCC A-AACUA-GA GUA-----CU G-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCCACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCUG GCCUGGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UAAG--- -AA----AUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----AA---| CUU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U CA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GC-UC-CG A-GGGU-GUG AUU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.mortif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium mortiferum. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium mortiferum. ORGANISM Fusobacterium mortiferum. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58680 ATCC 25557 (T) = VPI 4123A BASE COUNT 379 a 296 c 421 g 316 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~NAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CA--U GGUG-GCGG- 361 -A-CG-GG-U GAGN---AAC -GC-GUAAA- GAA--CUU-G C-CCNG---C -AGUC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GU-G--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A UU-CA----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----CAGN-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- UGA------- -----UA-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GNGC| UUUC-AG-UU 1021 --GG-GAC-- GA-A--G--- ---------( ------UAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC N-AACUA-GA GUA-----CU G-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CNNA- 1441 -U-G-GG(-G AA-G)CCAG- -CCCACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CN--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACNN -NNA-GGAAU UG-ANGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UAAG--- -AA----AUU 1981 -AGC-A--(- GAGA-)-UGC -U-UUUG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGN------ ----NA---| CUU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CN-U |-UC--GUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCNCCC- GUC-ACN--- --CCA-CGAG A--GU-UGG- UU-GC-ACCA -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GC-UC-CG A-CGGU-GUG AUU-AN-CN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.necgen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium necrogenes. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium necrogenes. ORGANISM Fusobacterium necrogenes. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55408 ATCC 25556 (T) = NCTC 10723 = VPI 2368 BASE COUNT 341 a 277 c 397 g 295 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..U--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CCUG---C -NGUC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GU-G--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A UU-CA----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGGG-- AGA---G-|C UUUGC----- -GU|----CC U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-NAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UN-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAC-- GA-A--G--- ---------( ------UNA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 G-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC A-AACUA-GA GUA-----CU G-GA-GAGGU GGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCCACUG-- ---------- ---------- ---------G 1501 ACA--GA-UN CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UAAG--- -AA----AUN 1981 -AGC-A--(- GAGA-)-UGC -U-NUNG--- UG-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGN------ ----AA---| CUU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- NA-ACC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.ulcera 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium ulcerans. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium ulcerans. ORGANISM Fusobacterium ulcerans. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55412 NCTC 12111 (T) = ATCC 49185 BASE COUNT 348 a 279 c 393 g 298 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....A GGUG-GCGG- 361 -A-CG-GG-U NAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-U--U-GG ---GUC-(-- --------GC 541 AU-------- -)-CAU---C UG-GU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-UU- 1261 A-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCU U-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CAAG--- -AA----GUU 1981 -AAC-A--(- GAGA-)-UGU -U-UUCG--- UG-------- -CCUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAGG------ ----AA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-U-G-C- AA-ACC-U(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCAU-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.morti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium mortiferum. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium mortiferum. ORGANISM Fusobacterium mortiferum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55414 ATCC 25557 (T) = VPI 4123A NB: not = CRW seq of ATCC 25557 (which was redone to prove validity=>Fus.morti3) this is unlikely to be ATCC 25557 BASE COUNT 349 a 277 c 390 g 301 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..A--- GGUG-GCGG- 361 -A-CG-GG-U NAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-C--U-GA ---GUC-(-- --------GC 541 AU-------- -)-CAU---U UG-GU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCU U-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CAAG--- -AA----GUU 1981 -AAC-A--(- GAGA-)-UGU -U-UUCG--- UG-------- -CCUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAGG------ ----AA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UNG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-U-G-C- AA-ACC-U(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCAU-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 UCACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.variu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium varium. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium varium. ORGANISM Fusobacterium varium. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55413 NCTC 10560 (T) = VPI 0501 = ATCC 8501 BASE COUNT 351 a 278 c 391 g 297 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....A GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-GG 481 AU-AUU---- ---------- -------A-U GA-C--U-GA ---GUC-(-- --------GC 541 AU-------- -)-CAU---U UG-GU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCU U-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C...G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CAAG--- -AA----GUU 1981 -AAC-A--(- GAGA-)-UGU -N-UUCG--- UG-------- -CCUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAGG------ ----AA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-U-G-C- AA-ACC-U(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCAU-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.varium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium varium. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium varium. ORGANISM Fusobacterium varium. REFERENCE 1 AUTHORS Paster,B.J., Dewhirst,F.E., Yang,D., Weisburg,W.G. and Woese ,C.R. TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58686 ATCC 8501 = NCTC 10560 (T) = VPI 0501 BASE COUNT 387 a 293 c 428 g 327 t 2941 others ORIGIN 1 .......... .......... .......... ...NNAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--A GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUUA---C -AGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-C--U-GA ---GUC-(-- --------GC 541 AU-------- -)-GAU---U UG-GU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GAC-GA- UGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NYA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| NUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCU A-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCNA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- N-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NNNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---CAAG--- -AA----GUU 1981 -AAC-A--(- GAGA-)-UGU -U-UUCG--- UG-------- -CCUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAGG------ ----NA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-U-G-C- AA-ACC-U(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCAU-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCUAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GU-UC-CG A-GGGU-GUG AUU-AG-CG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.necph3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium necrophorum str. FnS40. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium necrophorum str. FnS40. ORGANISM Fusobacterium necrophorum. REFERENCE 1 AUTHORS Nicholson,L.A., Morrow,C.J., Corner,L.A. and Hodgson,A.L.M. TITLE Phylogenetic relationship of Fusobacterium necrophorum A, AB, and B biotypes based upon 16S rRNA gene sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 315-319 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74408 isolate_name= FnS40; biotype B BASE COUNT 398 a 324 c 451 g 326 t 2877 others ORIGIN 1 .......... .......... .......... .......... AAGGUU(U-G A)U-CAU|-G 61 GCUCAG--AU -GAAC-GC-- UGAC-AGA-A UGGC-UU--A ACAC-AUGCA A-GUC-G-AC 121 U--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UC (--UU----- ---------- ---------- 241 --------CG -)-A-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUG-GAGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCU---U -AGAC-C-GG 421 -GAC-AA-CA U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GG-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GGA---G GA-AU----C AU--GAAA-- ---GC----- ---------- 601 --(------- --UAGAU--- ---)------ ---------| -----G--C- G--CUA---- 661 ----AGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(ACA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UC 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAC- GUC-UAG-GC -G|-GC-AA- 1261 G-GA-AAG|U CUG---AUGU G-AAA-AU-G CG-GAG-C(U UC-A)A-CUC -CG-U-AU-- 1321 -GGCG-UUGG A-AAC-UGCC U-UACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-AA)- ---------- ---------- -A-------- -------CCU -CAAGC-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GG-AGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACG--- -AA----CGG 1981 -AGC-A--(- GAGA-)-UGC -G-CCGG--- UG-------- -CCCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----AA---| CGU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UU-A -GU)--CCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AU-CC----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGG-GA-U A-CU-G-CCU --GC(-UA-C GA)-GCA-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A U-GC-UC-CG A-GGGU-GUG GUU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGUCGUGCUG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.necph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium necrophorum str. FnS-1. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium necrophorum str. FnS-1. ORGANISM Fusobacterium necrophorum. REFERENCE 1 AUTHORS Nicholson,L.A., Morrow,C.J., Corner,L.A. and Hodgson,A.L.M. TITLE Phylogenetic relationship of Fusobacterium necrophorum A, AB, and B biotypes based upon 16S rRNA gene sequence analysis JOURNAL Int. J. Syst. Bacteriol. 44, 315-319 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X74407 isolate_name= FnS-1; biotype AB BASE COUNT 390 a 318 c 440 g 319 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGAC-ACG-A AUGC-UU--A ACAC-AUGCA A-GUC-G-AC 121 U--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUG-GCGC- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCU---U -AGUC-U-GG 421 -GAC-AA-CA U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GGA---G GA-AU----C AU--GAAA-- ---GC----- ---------- 601 --(------- --AUGAU--- ---)------ ---------| -----G--C- A--CUA---- 661 ----AGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(ACA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UC 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GU-AA- 1261 G-GA-AAG|U CUG---AUGU G-AAA-AU-G CG-GAG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -GGCG-UUGG A-AAC-UGCC U-UACUA-GA GUA-----CU A-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGCAG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUUA U--UA-CU-- -------A|U -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --SS-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GG-AGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACG--- -AA----CGG 1981 -AGC-A--(- GAGA-)-UGC -G-CCGG--- UG-------- -CCCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----AA---| CGU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AG-CC----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-C GA)-GCA-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-G-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A U-GC-UC-CG A-GGGU-GUG GUU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGU--UG GAACACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.necpho 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium necrophorum subsp. necrophorum ATCC 25286 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium necrophorum subsp. necrophorum ATCC 25286 (T). ORGANISM Fusobacterium necrophorum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55411 ATCC 25286 (T) = VPI 2891 BASE COUNT 346 a 289 c 401 g 279 t 3061 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..G--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCU---U -NGUC-U-GG 421 -GAC-AA-CA U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUNCC-GG 481 AU-AUU---- ---------- -------A-U GN-U--U-NN ---UUC-(-- --------GC 541 NU-------- -)-GGA---G GA-AU----C CU--GAAA-- ---GC----- ---------- 601 --(------- --UAGAU--- ---)------ ---------| -----G--C- G--CUN---- 661 ----AGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UNN-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(ACA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UC 1021 --GG-GAA-- GA-A--G--- ---------( ------UCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-AA- 1261 G-GA-AAG|U CUG---AUGU G-AAA-AU-G CG-GAG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -GGCG-UUGG A-AAC-UGCC U-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACG--- -AA----CGG 1981 -AGC-A--(- GAGA-)-UGC -G-CCNG--- UG-------- -CCUU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----AA---| CGU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AU-CC----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-G-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.gonid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium gonidiaformans. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium gonidiaformans. ORGANISM Fusobacterium gonidiaformans. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55410 ATCC 25563 (T) = VPI 0482A BASE COUNT 349 a 283 c 403 g 284 t 3057 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..G--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCN---U -NGUC-U-GG 421 -GAC-AA-CA U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GC-U--U-UC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G GA-AG----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUA---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UC 1021 --GG-GAA-- GA-A--G--- ---------( ------UAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-AA- 1261 G-GA-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC U-AACUA-GA GUA-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-NA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACN--- -AA----GAG 1981 -UGC-A--(- GAGA-)-UGC -G-CUNG--- UG-------- -CUUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAAG------ ----AA---| UGU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AG-CC----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-G-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.gonidi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium gonidiaformans. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium gonidiaformans. ORGANISM Fusobacterium gonidiaformans. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58679 Former RDP Sids: Fus.gonido ATCC 25563 (T) = VPI 0482A BASE COUNT 384 a 305 c 437 g 314 t 2936 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCGAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-G-AC 121 U--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUN-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---U -AGUC-U-GG 421 -GAC-AA-CA U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-U GC-U--U-UC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G GA-AG----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUA---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----UA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAA A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| NUUC-AG-UC 1021 --GG-GAA-- GA-A--G--- ---------( ------CAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-AA- 1261 G-GA-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCC U-UNCUA-GA GUN-----CU G-GA-GAGGU AGG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CNNA- 1441 -U-G-GG(-G AA-G)CCAG- -CCUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-NAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CN--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACA--- -AA----GAG 1981 -UGC-A--(- GAGA-)-UGC -G-CUUG--- UG-------- -CUUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAAG------ ----AA---| UGU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUA- 2281 UG--UUAC-C AG-CC----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-C GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGC-G-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A U-GC-UC-CG A-GGGU-GUG GUU-AG-CG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.russi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium russii. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium russii. ORGANISM Fusobacterium russii. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58681 ATCC 25533 (T) = VPI 0307 BASE COUNT 398 a 285 c 436 g 316 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNGAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-A-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-AC (--UU----- ---------- ---------- 241 --------CG -)GU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAGACC-GG 481 AU-AUU---- ---------- -------A-U GA-A--U-UC ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AA-GU----C AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAA--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|N-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GCUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-UA- 1261 G-AU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUA U-AGCUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ANGGG-G -A-C-CN--G 1861 N-A--CA-AG NGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACU--- -AA----GGG 1981 -CUC-A--(- GAGA-)-UGA -G-CUUG--- UG-------- -CUCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGAG------ ----AA---| AGU-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-G-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GU-UC-CG A-GGGU-GUG AUU-AG-CG- ANN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.russi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium russii. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium russii. ORGANISM Fusobacterium russii. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55409 ATCC 25533 (T) = VPI 0307 BASE COUNT 362 a 271 c 396 g 287 t 3060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGAC-U-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAGACC-GG 481 AU-AUU---- ---------- -------A-U GA-A--U-UC ---AUU-(-- --------GC 541 AU-------- -)-GAU---G AA-GU----C AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAN--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-NC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--G--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------C 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GC -G|-GC-UA- 1261 G-AU-AAG|U CUG---AUGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CUC -CG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUA U-AGCUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------C ---UACU--- -AA----GGG 1981 -CUC-A--(- GAGA-)-UNA -G-CUNG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGAG------ ----AA---| AGU-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --NC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-G-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAA 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.nucle2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (T). ORGANISM Fusobacterium nucleatum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55401 ATCC 25586 (T) = VPI 4355 BASE COUNT 358 a 270 c 390 g 295 t 3063 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGUU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A AG-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAN A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCA U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GNNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UGU -U-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.period 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium periodonticum str. EK1-15 ATCC 33693 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium periodonticum str. EK1-15 ATCC 33693 (T). ORGANISM Fusobacterium periodonticum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33693 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55405 isolate_name= EK1-15 BASE COUNT 355 a 270 c 390 g 296 t 3065 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCN---C -NGUU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A AG-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(AAN A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGCA U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UGU -U-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.nucle4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium nucleatum subsp. polymorphum ATCC 10953 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium nucleatum subsp. polymorphum ATCC 10953 (T). ORGANISM Fusobacterium nucleatum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55402 ATCC 10953 (T) = DSM 20482 = NCTC 10562 BASE COUNT 362 a 268 c 388 g 298 t 3060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGCU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A AA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUA U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UNU -U-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG AGU-C-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.nucle6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium nucleatum subsp. fusiforme NCTC 11326 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium nucleatum subsp. fusiforme NCTC 11326 (T). ORGANISM Fusobacterium nucleatum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55403 BASE COUNT 361 a 266 c 387 g 296 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGGU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--N-AU ---AGG-(-- --------GC 541 AU-------- -)-CCU---N UA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAA--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------CAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUA U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UNU -N-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --NC(-GA-U GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-C-G-C- AA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.alocis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium alocis. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium alocis. ORGANISM Fusobacterium alocis. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55406 BASE COUNT 368 a 264 c 392 g 298 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGAU-A-GG 421 -GAC-AA-CA U--------- ------UU-- A(-GAAA-)U -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-A--A-AU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAAAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AGA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCN-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUG U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAU-A--(- GAGA-)-UAU -A-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --GC(-GA-U GA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-U-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.nucle5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium nucleatum subsp. animalis NCTC 12276 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium nucleatum subsp. animalis NCTC 12276 (T). ORGANISM Fusobacterium nucleatum. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55404 BASE COUNT 365 a 263 c 388 g 300 t 3060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGCU-A-GG 421 -GAC-AA-CA U--------- ------UU-- A(-GAAA-)U -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A GA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAA--- ---)------ ---------| -----G--C- A--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------GAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUA U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUNAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAU-A--(- GAGA-)-UNU -U-UCAG--- UG-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --NC(-GA-U GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-U-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.nuclea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (T). ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium nucleatum subsp. nucleatum ATCC 25586 (T). ORGANISM Fusobacterium nucleatum. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58683 ATCC 25586 (T) = VPI 4355 BASE COUNT 411 a 299 c 437 g 347 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~AUUGAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-U-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AUUUGGG-UU (--UU----- ---------- ---------- 241 --------UU -)AA-CUUCG AUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGCU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-UA 481 AU-AUU---- ---------- -------A-U GA-U--U-AU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A GA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAUAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAC--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUG U-AACUA-GA GUN-----CU G-GA-AAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AA-G------ -------CG- C-NNNA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UGU -U-UCAG--- UG-------- -UCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --AC(-GA-U GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-U-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GU-UC-CG A-GGGU-GUG AUU-AG-CG- ANN-GGGG.. 3301 .......... GUAA-CAAGG UAUCC-G... .(.GA-A)CG .......... GAUCACCUCC 3361 UUUN|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.simiae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium simiae. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium simiae. ORGANISM Fusobacterium simiae. REFERENCE 1 AUTHORS Paster,B., Dewhirst,F., Yang,D., Weisburg,W.G. and Woese,C.R . TITLE Phylogeny of the fusobacteria and relatives JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58685 ATCC 33568 = VPI 13611 (T) BASE COUNT 408 a 286 c 431 g 333 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUGAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGAC-AGA-A -UGC-UU--A ACAC-AUGCA A-GUC-A-AC 121 U--UG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AUUUGGG-UU (--U------ ---------- ---------- 241 --------UU -)AA-CUUAG AUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -AGAU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-UG 481 AU-AUU---- ---------- -------A-U GA-U--U-AC ---AAG-(-- --------GC 541 AU-------- -)-CUU---G UA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAAAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----AGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCAA UUCU-GU-GU 961 G-C-AC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUG U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGANG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CN--AA---- --GC-(AAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGAAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UGU -U-UCAG--- UG-------- -UCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --AC(-GA-U GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUUAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-U-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-A-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A U-GC-UC-CG A-GGGU-GUG AUU-AG-CG- ANC-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.simia2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium simiae. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium simiae. ORGANISM Fusobacterium simiae. REFERENCE 1 AUTHORS Lawson,P.A., Gharbia,S.E., Shah,H.N., Clark,D.R. and Collins ,M.D. TITLE Intrageneric relationships of members of the genus Fusobacterium as determined by reverse transcriptase sequencing of small-subunit ribosomal ribonucleic acid JOURNAL Int. J. Syst. Bacteriol. 41, 347-354 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55407 ATCC 33568 = VPI 13611 (T) BASE COUNT 363 a 266 c 390 g 299 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G GGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- GAA--CUU-G C-CUCA---C -NGAU-A-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUNCC-UN 481 AU-AUU---- ---------- -------A-U GA-U--U-AC ---AAG-(-- --------GC 541 AU-------- -)-CUU---G UA-AU----U AU--GAAA-- ---GC----- ---------- 601 --(------- --UAAAU--- ---)------ ---------| -----G--C- G--CUG---- 661 ----UGAG-- AGA---G-|C UUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AAGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -UUA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-ACC(GAG A)-GUC-UGA UCCA|-GCNA UUCU-GU-GU 961 G-C-NC-G-A U-GAA--G-U UU(--UU-CG --)GA-AUGU AAA--GUGC| UUUC-AG-UU 1021 --GG-GAA-- GA-A--A--- ---------( ------AAA- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCA-A-CA G-AA--GAAG ---------U 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCA-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GUC-UAG-GU -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AU-G CA-GGG-C(- UC-A)A-CUC -UG-U-AU-- 1321 -UGCG-UUGG A-AAC-UGUG U-AACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 CU-ACAAGU- GUA-GAG(-G UGAAA)-UUC -GU-AGAU-A UU-UGUAGG- AAUG-CCGA- 1441 -U-G-GG(-G AA-G)CCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUA AA-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-UC-GA)- ---------- ---------- ---------- --------AC -CUCAG-CGC 1741 CC--AA---- --GC-(UAA- ---C)G-CG- AUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-NU-NGU -UUAAUU-CG -(ACGNAA-C G)--CGAGGA 1921 A-CCUUA-CC AGC-GU-UUG ACA-UC|--- ---------U ---UAGG--- -AA----UGA 1981 -GAC-A--(- GAGA-)-UGU -U-UCAG--- UG-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGA------ ----AA---| CCU-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UC--GUA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-U A-CU-G-CCU --AC(-GA-U GA)-GUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUNAU-A-CG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -AA--CAGAG AGU-U-G-C- AA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCAG-AAAA -CU-N-UUC- UUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UU-GC-ACCU -GAA-G-UAG 3121 C-AGG-C-CU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16-GRAM+ 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16 GRAM_POSITIVE_PHYLUM. ACCESSION No information KEYWORDS No information. SOURCE 2.16 GRAM_POSITIVE_PHYLUM. ORGANISM 2.16 GRAM_POSITIVE_PHYLUM. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1-HI 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1 HIGH_G+C_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1 HIGH_G+C_SUBDIVISION. ORGANISM 2.16.1 HIGH_G+C_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.1 ENVIRONMENTAL_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.1 ENVIRONMENTAL_ASSEMBLAGE. ORGANISM 2.16.1.1 ENVIRONMENTAL_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1053 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1053. str. SBR1053. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1053. str. SBR1053. ORGANISM str. SBR1053. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84490|g871611 isolate_name= SBR1053 BASE COUNT 93 a 98 c 142 g 68 t 3975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGU-G -UGC-UU--A ACAC-AUGCA A-GUG-GUGC 121 G-ACG-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GG|-CA--A AGCC-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCCG---A -UGAC-C-GG 421 -GAC-AA-CC C--------- ------GA-- C(-GAAA-)G -UCGG-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------G-U GC-C--U-G- ---GAC-(-- --------AU 541 AA-------- -)-GUC---- -C-GG---UC AC--UAAA-- ---GGUAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUUC--C- G--CAU---- 661 ----UGGG-- AGG---G-|G GCCGC----- -GG|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-CAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GC-GC-(GAA A)-GCG-UGA CGCA|-GCAA CACC-GC-GU 961 N-A-GG-G-A A-GAC--G-G GC(--UU-AG --)GG-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC65 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68457 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 112 a 125 c 163 g 77 t 3899 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUG-GAGC 121 G--------- -----AC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAACCAG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CUGGG GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- ---|------ AGCC-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCG---A -UGAU-U-GG 421 -GAC-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGG-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------C-C CU-C--U-G- ---GCC-(-- --------AC 541 AA-------- -)-GGC---- CG-CU----G GG--GAAA-- ---GGAAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCUC--C- G--CAU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCAA UGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAA--GCCC| UUUC-AG-CG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68459 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 252 a 285 c 378 g 194 t 3267 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUG-GAGC 121 G--------- -----AC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAACCAG-GC (--UU----- ---------- ---------- 241 --------UG -)GC-CUGGG GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----A----- ---|-----G AGCC-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCG---A -UGAU-U-GG 421 -GAC-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGG-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------C-C CU-C--C-GG ---CCU-(-- --------CA 541 AG-------- -)-GCC---G CU-GG----G GA-AAGGAA- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCUC--C- G--CAU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UG- CGA------- -----UG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UU 1021 --GG-GAC-- GA-AG-C-UC --CG--CCG( GU---UAACA ----GC---) CGGC-CG-GA 1081 ---------- -------G-- U-GA-CGGU- A-CCU-U-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-CGGAAUA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GC-UC- 1261 G-GU-AAG|U CCG---CUGU G-AAA-GU-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAU- 1321 -GCCA-GUGG A-AAC-UGUC G-AGCUA-GA GUC-----CG G-AA-GAGGC GAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCGCUG-- ---------- ---------- ---------G 1501 GAC--GG-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(UGU-CG)A ---------- ---------- -C-------- -------UCC -CUCCG-UGC 1741 CG--AC---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCUG--- -AC----CGC 1981 -CGU-G--(- GAAA-)-CAC -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC..... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC47 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68460 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 114 a 133 c 174 g 81 t 3874 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -CGC-UU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCAGG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-CCUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCA-A C-CCCC---G -ACAC-C-GG 421 -GAU-AG-CC C--------- ------AG-- G(-GAAA-)C -UUGG-A--U UAAUACC-GG 481 AU-GCU---- ---------- -------C-C GU-C--U-G- ---GCC-(-- --------UU 541 CG-------- -)-GGC---- CG-GC----C GG--AAAA-- ---GGGUAGC ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCUC--C- G--GUC---- 661 ----GGGG-- ACG---A-|G CCCGC----- -GG|----CG G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-CGCAAU-- GC-GC-(GAA A)-GCG-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A A-GAC--G-G CC(--UU-AG --)GG-UUGU AAA--CCCC| UUUC-AG-GA 1021 --GG-GAC-- GA-AG-G-UU --CAC--CG( GU---GAAUA ----GC---) CGUG-UG-GA 1081 ---------- -------U-- U-GA-CGGU- A-CCU-C-CA C-AA--GAAG ---------C 1141 -ACCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1039 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1039. str. SBR1039. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1039. str. SBR1039. ORGANISM str. SBR1039. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84482|g871603 isolate_name= SBR1039 BASE COUNT 92 a 82 c 132 g 79 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--U AGAC-AUGCA A-GUC-GAAC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-GA (--GC----- ---------- ---------- 241 --------AA -)UU-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-A---U AGUG-GCGA- 361 -A-CG-GC-G GAGU---AAU -AC-AUAAG- CAA--CGU-G C-CCUG---A -AGAC-C-GG 421 -GAU-AG-UC G--------- ------CG-- G(-GAAA-)C -UGCG-G--G UAAUACC-GG 481 AU-GUG---- ---------- -------G-U UC-U--U-AG ---AGG-(-- --------UC 541 AU-------- -)-CCU---U UG-GG----A AU--UAAAU- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--CUU---- 661 ----CAGG-- AGC---G-|G CUUGU----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-G-GG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CCC-C|C-CG -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-ACC -(UACG)--G GUG-GN-AG- N-A---GU-U 901 UGG-AAUAUU G-CCCAAU-- GG-GG-(GAA A)-CCC-UGA GGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A U-GAA--G-G AU(--UU-AG --)GN-CUGU AAA--CUCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2033 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2033. str. SBR2033. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2033. str. SBR2033. ORGANISM str. SBR2033. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84572|g871693 isolate_name= SBR2033 BASE COUNT 104 a 96 c 137 g 75 t 3964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-UU--N AGAC-AUGCA A-GUC-GAAC 121 G--GG----- -----UUU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCUGAA-GG (--GC----- ---------- ---------- 241 --------AA -)CC-GGAGG AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAG---- ---|-CC--- AGUG-GCAG- 361 -A-CG-GG-U GCGU---AAC -AC-GUAAG- CAA--UCU-A C-CCUU---G -UGUG-G-GG 421 -AAU-AA-CC U--------- ------GU-- C(-GAAA-)G -ACGG-G--C UAAUGCC-GC 481 AU-AC----- ---------- -------G-G UU-G--U-CC ---UUC-(-- --------AC 541 CU-------- -)-GAA---G GG-CA----U AC--UAAA-- ---ACCCGG- GA--CC---- 601 --(------- ---GAAA--- ---)------ -----GG--| -CCGGG--U- G--CAU---- 661 ----GAGG-- AGG---G-|G CUUGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-N-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-AAC -(UACG)--G GUG-GC-AG- C-A---GU-U 901 UCG-AAUUAU U-CACGAU-- GG-GC-(GAA A)-GCC-UGA UGGU|-GCGA CGCC-GC-GU 961 N-A-AG-G-A U-GAA--G-G UC(--UU-CG --)GU-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68454 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 252 a 269 c 361 g 181 t 3313 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-----A--G GU---CCA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCCGG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CUGGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA--G- ACC|-----U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CCU-G C-CCCG---A -AGAC-C-GG 421 -GAU-AA-CA G--------- ------CG-- G(-GAAA-)C -CGCU-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------C-C CA-U--C-GG ---ACC-(-- --------AC 541 AU-------- -)-GGC---C UG-AU----G AG--GAAA-- ---UG----- ---------- 601 --(------- ---GAUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AGG---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCN-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GA--- GC-------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-CGGAAUA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GC-UC- 1261 G-GU-AAG|U CCG---CUCU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAG- 1321 -GCGG-GCGG A-UAC-UGUC G-GGCUA-GA GUC-----CG G-AA-GAGGC GAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCGCUG-- ---------- ---------- ---------G 1501 GAC--GG-UA CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------UCC -CUCCG-UGC 1741 CG--AC---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---N-N GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-ANN A-U-GU-GGU -UUAACU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCUG--- -AC----AGC 1981 -CGU-G--(- GAAA-)-CAC -G-GUCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CC... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC87 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68455 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 117 a 124 c 159 g 77 t 3899 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-----A--G GU---CCA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCCGG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CUGGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA--G- ACC|-----U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CCU-G C-CCCG---A -AGAC-C-GG 421 -GAU-AA-CA G--------- ------CG-- G(-GAAA-)C -CGCU-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------C-C CA-U--C-GG ---AUC-(-- --------AC 541 AU-------- -)-GGC---C UG-AU----G AG--GAAA-- ---UG----- ---------- 601 --(------- ---GAUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AGG---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCN-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- G--------- ---------( ------AUAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sp36 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 3. str. 3. ACCESSION No information KEYWORDS No information. SOURCE str. 3. str. 3. ORGANISM str. 3. REFERENCE 1 AUTHORS Saano,A.K. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92466|g1044802 (bases 66 to 279) legacy_attribute= biovar:Viikki forest soil DNA isolate_name= 3 BASE COUNT 51 a 58 c 67 g 38 t 4162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- ..A--CCU-A C-CCCG---A -AGAC-C-GG 421 -GAC-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACU-GG 481 AU-AUC---- ---------- -------C-C CA-U--C-GG ---AUC-(-- --------GC 541 AU-------- -)-GGU---U UG-AU----G AG--GAAAU- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AGG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1115 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1115. str. SBR1115. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1115. str. SBR1115. ORGANISM str. SBR1115. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84541|g871662 isolate_name= SBR1115 BASE COUNT 99 a 103 c 130 g 67 t 3977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... NNNN-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----G UC-CA----- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGCAG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CUGCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GAA- GAC|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CCU-G C-CCCG---A -AGAU-C-GG 421 -GAU-AA-CC C--------- ------UC-- C(-GAAA-)G -GAGA-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------C-C CA-C--C-GG ---AUC-(-- --------GU 541 AU-------- -)-GAU---C UG--G----U GA-GGAAA-- ---UG----- ---------- 601 --(------- ---GAUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AGG---G-|U CUCGU----- -GG|----UC U--AUCA-G- CUU-G---UU 721 GG-UG-GC-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CAGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GAG-AAUCUU G-CGCAAU-- GG-AC-(GAU A)-GCC-UGA CGCA|-GNAA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--CU-CG --)GU-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2107 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2107. str. SBR2107. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2107. str. SBR2107. ORGANISM str. SBR2107. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84633|g871754 isolate_name= SBR2107 BASE COUNT 95 a 111 c 135 g 63 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGN-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----G UC---CAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----GGAC- GAC|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CCU-G C-CCCG---A -AGAC-C-GG 421 -GAU-AA-CC C--------- ------GA-- G(-GAAA-)C -UCGA-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------C-C CA-C--G-AG ---AUC-(-- --------GC 541 AU-------- -)-GAU---C UU-GU----G AG--GAAAU- ---G------ ---------- 601 --(------- --UCUUUU-- ---)------ ---------| --------C- G--CUU---- 661 ----CGGG-- AGG---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A C-GAA--G-G CU(--CU-CG --)GG-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1087 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1087. str. SBR1087. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1087. str. SBR1087. ORGANISM str. SBR1087. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84516|g871637 isolate_name= SBR1087 BASE COUNT 95 a 100 c 141 g 68 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UC-CA----- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCCCG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GAA- GAG|-AU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G U-CCUG---G -UCUC-C-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -AACU-G--C UAAUACC-GG 481 AU-GCC---- ---------- -------G-U CG-G--A-GC ---GUC-(-- --------GC 541 AU-------- -)-GGC---G CG-CU----G AC--GAAA-- ---GG----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----C--U- G--GAU---- 661 ----CAGG-- AGG---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1076 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1076. str. SBR1076. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1076. str. SBR1076. ORGANISM str. SBR1076. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84508|g871629 isolate_name= SBR1076 BASE COUNT 95 a 100 c 141 g 68 t 3972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UC-CA----- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UCCCG-UG (--GC----- ---------- ---------- 241 --------AA -)CA-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GAA- GAG|-AU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G U-CCUG---G -UCUC-U-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -AACU-G--C UAAUACC-GG 481 AU-GCC---- ---------- -------G-U CG-G--A-GC ---GUC-(-- --------GC 541 AU-------- -)-GGC---G CG-CU----G AC--GAAA-- ---GG----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----C--U- G--GAU---- 661 ----CAGG-- AGG---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCCU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.25-16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11969 library_source= Pacific Ocean station 25 100m depth bacterioplankton DNA BASE COUNT 51 a 54 c 66 g 48 t 4157 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .CC-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-CG-C AUG--CUACA AUGGC-A-AG -UA--CAACG AG........ ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.MC58 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mount Coot-tha. ACCESSION No information KEYWORDS No information. SOURCE Mount Coot-tha. ORGANISM Mount Coot-tha. REFERENCE 1 AUTHORS Stackebrandt,E., Liesack,W. and Goebel,B.M. TITLE Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis JOURNAL FASEB J. 7, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68456 library_source= Mount Coot-tha region (Brisbane, Australia) 5-10cm depth soil DNA BASE COUNT 262 a 288 c 364 g 210 t 3252 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A AAAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAG ---------- ---------- ---------- ---------- 181 ---------- ---------- --CC-CG-GG (--CU----- ---------- ---------- 241 --------UG -)CC-CGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CCU-G C-CCCG---A -AGAC-C-GG 421 -GAC-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------U-U CA-C--C-GG ---AUC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G AA--GAAA-- ---UG----- ---------- 601 --(------- ---GAUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AUG---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GU-C-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 AGG-AAUCUU G-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- G--------- ---------( ------AUAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUGU CC-GGAUUCA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UC- 1261 A-GU-AAG|U CAG---GUGU G-AAA-UC-C UC-AGG-C(- UC-A)A-CCU -GG-G-GUC- 1321 -GCCA-UCUG A-UAC-UGCU GUGGCUA-GA GCC-----CG G-UA-GGGCC CA--C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 CCC--GG-UA CUGACG-CUC AG-G------ -------UG- C-GAAA-NN- NN-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGU A--UG-CU-- -------A|G -CC-GU-UGG -AG-GG---- ---------- 1681 -(-UU-UA)- ---------- ---------- ---------- -------CCC -UUCAG-UGG 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-CC-UUG ACA-UC|-C- ---------C ---GGUC--- -GC----GGG 1981 AACG-A--(- GAGA-)-UCG -A-UCCC--- U--------- -UCAG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- CUGG------ ---------| ACC-GG-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ----(---UU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GU(-G... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD40 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26227|g498430 library_source= unidentified soil bacterium from paddy field BASE COUNT 69 a 76 c 79 g 54 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-A |-CC--UCU- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCC --CG(-GU-C AA)-CGG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGA-U-G-C- CA-CAC-C(G 2881 -CGA)GGUA- ---------- GA-GCUAA-A CCCAA-AAAG -CC-G-GUC- UAAGUUCAGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GUA-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s16 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s16. str. s16. ACCESSION No information KEYWORDS No information. SOURCE str. s16. str. s16. ORGANISM str. s16. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69320|g1181102 isolate_name= s16 BASE COUNT 85 a 73 c 114 g 75 t 4029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GAGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- CCG-UAG-GC -G|-GC-UC- 1261 U-UC-AAG|U CGG---AUGU A-AAA-UC-U CC-CGG-C(- UC-A)A-CUG -GG-A-GGG- 1321 -AUCA-UUCG A-UAC-UGUU G-GGCUA-GA GUG-----CA G-CA-GAGGA AAG-U|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------UG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-AU-AGG -GA-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CU -CUCUG-UGC 1741 CG--AA---- ---C-(UAA- ---C)G-CU- UUAA-GUGUC C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G29 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91281|g987029 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 86 a 72 c 103 g 78 t 4037 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-AAGG-C-- 1201 GAA-CGUUAU CC-GGAUUUA -CUGGNNN|G UAAA-GCGG- GUG-UAG-AC -G|-GU-CC- 1261 U-UU-AAG|U CAG---UUGU G-AAA-UCUC CC-GAC-U(- CA-A)U-CGG -GA-G-U-C- 1321 -UGCA-AUUG A-UAC-UGGA G-AGCUU-GA GGG-----CA U-CA-GAAGA AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AC-G)GCGG- -CUUUCUA-- ---------- ---------- ---------G 1501 GGU--GC-UC CUGACG-UUG AG-G------ -------CC- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-AC- -GG(AUUA-G AUAC)-CCG- ----UGUA-G UC----CAC- A-CC-CU--A 1621 AAC-G-UUGA A--UA-CU-- -------A|G -GU-AU-ANG -NN-GUA--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCU -CUCUG-UGC 1741 CG--A----- ---M-(KAA- ---C)G-CU- UUAA-GUAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.2 RBB.RADIOTOLERANS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.2 RBB.RADIOTOLERANS_GROUP. ORGANISM 2.16.1.2 RBB.RADIOTOLERANS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rbb.radtol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrobacter radiotolerans. ACCESSION No information KEYWORDS No information. SOURCE Rubrobacter radiotolerans. ORGANISM Rubrobacter radiotolerans. REFERENCE 1 AUTHORS Carreto,L., Moore,E., Nobre,M.F., Wait,R., Riley,P.W., Sharp ,R.J. and da Costa,M.S. TITLE Rubrobacter xylanophilus sp. nov., a new thermophilic species isolated from a thermally polluted effluent JOURNAL Int. J. Syst. Bacteriol. 46, 460-465 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87134|g971581 BASE COUNT 344 a 344 c 463 g 256 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGU-G -UGC-UU--U AGAC-AUGCA A-GUC-GMAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAY -AC-GUGGG- CAA--CCU-G C-CCCU---C -GCAG-G-GG 421 -GAC-AA-CC G--------- ------GA-- G(-GAAA-)C -UCCG-G--C UAAUACC-CC 481 GU-ACG---- ---------- -------C-U UG-U--C-GA ---GCC-(-- --------GC 541 AU-------- -)-GGC--AC CG-AC----A AG--GAAA-- ---GGUAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| GCCAUC--C- G--GCG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----UA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CACC-GU-GU 961 G-A-GC-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAC-- GA-AGGG-CG --AAG-GGU( U-----AAU- -----A---) GCCC-CU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-UC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GU-CU- 1261 G-GU-AAG|U CUG---UCGU G-AAA-GG-C UG-GGG-C(- UC-A)A-CCC -UG-G-ACG- 1321 -UGCG-AUGG A-UAC-UGCC A-GACUA-GA GGA-----UG G-UA-GAGGC GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACC--AU-AC CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -A-------- -------UCC -CUCGG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-UCU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- ---------G ---UGCUG-- CAA----GCG 1981 -CAC-G--(- GAAA-)-CGU -G-UGA---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)A------ GG-------- ----GU---| -GC-AC--CA |---C|A--G 2161 AU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AC-------- CGAG-C--GC AACCC-CC-G |-UG--AUG- 2281 UG--UUGC-U AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-CAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-U CUUAC-G-UC -CA--GGGC- 2821 U-AGA-AA-C GUG--CUACA AUGGC-G-UA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAUCAAAG -UG-C-GUC- UAAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-SGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-AGG- UA-AU-GCCC -GAA-G.... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rbb.radto2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrobacter radiotolerans. ACCESSION No information KEYWORDS No information. SOURCE Rubrobacter radiotolerans. ORGANISM Rubrobacter radiotolerans. REFERENCE 1 AUTHORS Kausar,J., Ohyama,Y., Terato,H., Ide,H. and Yamamoto,O. TITLE 16S rRNA gene sequence of Rubrobacter radiotolerans and its phylogenetic alignment with members of the genus Arthrobacter, gram-positive bacteria, and members of the family Deinococcaceae JOURNAL Int. J. Syst. Bacteriol. 47 (3), 684-686 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65647|g2315853 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 375 a 378 c 509 g 288 t 2826 others ORIGIN 1 .......... .......... .......... .......AAC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-G -UGC-UU--U AGAC-AUGCA A-GUC-GAAC 121 G--------- -----AGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAGUAA---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---C -GCAG-G-GG 421 -GAC-AA-CC G--------- ------GA-- G(-GAAA-)C -UCCG-G--C UAAUACC-CC 481 GU-ACG---- ---------- -------C-U UG-U--C-GA ---GCC-(-- --------GC 541 AU-------- -)-GGC--AC CG-AC----A AG--GAAA-- ---GGUAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| GCCAUC--C- G--GCG---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----UA C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-C 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CACC-GU-GU 961 G-A-GC-G-A U-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAC-- GA-AGGG-CG --AAG-GGU( U-----AAU- -----A---) GCCC-CU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-UC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GU-CU- 1261 G-GU-AAG|U CUG---UCGU G-AAA-GG-C UG-GGG-C(- UC-A)A-CCC -UG-G-ACG- 1321 -UGCG-AUGG A-UAC-UGCC A-GACUA-GA GGA-----UG G-UA-GAGGC GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 ACC--AU-AC CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-UGG -GG-GAG--- ---------- 1681 -(-UC-GA)- ---------- ---------- -A-------- -------UCC -CUCGG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-UCU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- ---------G ---UGCUG-- CAA----GCG 1981 -CAC-G--(- GAAA-)-CGU -G-UGA---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)A------ GG-------- ----GU---| -GC-AC--CA |---C|A--G 2161 AU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AC-------- CGAG-C--GC AACCC-CC-G |-UG--AUG- 2281 UG--UUGC-U AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-CAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-GC-U CUUAC-G-UC -CA--GGGC- 2821 U-AGA-AA-C GUG--CUACA AUGGC-G-UA -CA--CAAAG GGC-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAUCAAAG -UG-C-GUC- UAAGUUCGGA 2941 U-CGGAGUC- (UGCAAC-U- C)-GACUCCG -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-AGG- UA-AU-GCCC -GAA-G-UGG 3121 G-UGC-AGCU -AA-CCCC-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-G G-CU-CA-CG A-AGGU-AGG AUC-UG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(UGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUAA|GCUU. .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rbb.xylano 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rubrobacter xylanophilus str. PRD-1 DSM 9941 (T). ACCESSION No information KEYWORDS No information. SOURCE Rubrobacter xylanophilus str. PRD-1 DSM 9941 (T). ORGANISM Rubrobacter xylanophilus. REFERENCE 1 AUTHORS Carreto,L., Moore,E., Nobre,M.F., Wait,R., Riley,P.W., Sharp ,R.J. and da Costa,M.S. TITLE Rubrobacter xylanophilus sp. nov., a new thermophilic species isolated from a thermally polluted effluent JOURNAL Int. J. Syst. Bacteriol. 46, 460-465 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 9941 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87135|g971584 Former RDP Sids: Rbb.wessex isolate_name= PRD-1 NB: former name Rubrobacter wessexii BASE COUNT 333 a 400 c 529 g 246 t 2868 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--U AGGC-AUGCA A-GUC-GAAC 121 G--------- -----CGAAA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----GAGU- ---|----AG AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCU---C -RCAG-G-GG 421 -GAU-AA-CC G--------- ------GG-- G(-GAAA-)C -CCCG-G--C UAAUACC-CC 481 GU-ACG---- ---------- -------C-U UG-C--C-GG ---GGC-(-- --------GC 541 AU-------- -)-GCU---C CG-GC----A AG--GAAA-- ---GGUAGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| GCCAUC--C- G--GCG---- 661 ----AGGG-- AGG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-UG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-CC-AG- C-A---GC-C 901 AGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUU-GU-CG 1021 --GG-GAC-- GA-AG-G-GU --GAA-GGG( U----UAAUA -----G---) CCCC-UA-GC 1081 ---------- -------C-- U-GA-CGGU- A-CCC-G-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GAGC- GUG-UAG-GC -G|-GC-CC- 1261 G-GU-AAG|U CUG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCG- 1321 -UGCA-GUGG A-AAC-UGCC G-GGCUA-GA GGG-----CG G-CA-GAGGC GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 GCC--GU-UC CUGACG-CUG AG-A------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GA---- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- -------UCC -CUCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CG- AUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-UCU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------U ---GGUG--- --G----UAG 1981 -GCG-C--(- CGGA-)-AAC -G-GUGUCC- GA-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ---------| AGC-CA-GCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAC AA-------- CGAG-C--GC AACCC-CC-G |-CC--CUG- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-CAG-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-AGA-AA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCAUCAAAG -CC-G-GUC- UAAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-CGG- CA-AU-ACCC -GAA-G-CAG 3121 G-CGC-GGCC -AA-CCCC-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-C-G G-CU-UG-CG A-AGGU-AGG GCC-GG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(UGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD49 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26236|g498439 library_source= unidentified soil bacterium from paddy field BASE COUNT 61 a 75 c 87 g 53 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CC-G |-UC--CCA- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CC-C ACG--CUACA AUGGC-C-GG -UA--CAACG GGC-G-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUAU-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD59 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26246|g498450 library_source= unidentified soil bacterium from paddy field BASE COUNT 60 a 67 c 81 g 55 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UU--GCC- 2281 AG--UU-A-C ---------- ---------- ---------- ----(---AU ---GU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|G 2701 U-------C- U-GGC-GA-G A-CU-G-CCG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-AC-C CUUAU-A-UC -UG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGU-C-GG -UA--CAAUG CGU-U-G-C- CA-AGC-C(G 2881 -CGA)-GCG- ---------- GA-GCUAA-U CGCGC-AAAA -CC-G-GCC- UCAGUUCGGA 2941 U-AGGAGGC- (UGCAAC-C- C)-GACUCCU -UGAAGU-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGUUG- AAUAC-GGU- UCC-GGG-GC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD29 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26216|g498417 library_source= unidentified soil bacterium from paddy field BASE COUNT 66 a 66 c 75 g 56 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .....UCG-- CU-GUA---- ---------- ---------- ----(---UG ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UAC|A 2701 A-GU-GU-C- A-UAC-AG-G A-CU-G-CCG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -CG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-AA -UA--CAAUG GGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCCAA-U CCCC--AAAA -UU-G-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -AGAUUU)-A GUG-CGUUG- AAUAC-GUU- CCC-GGG-GC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD45 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26232|g498435 library_source= unidentified soil bacterium from paddy field NB: first 25 nucs erased (not conform to reasonable pattern) BASE COUNT 60 a 55 c 73 g 50 t 4138 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ......GG-G A-CC-G-ACG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 U-ACA-CA-C ACG--AUACA AUGGU-C-AG -UA--CAAUG GGU-A-G-C- UA-AGC-C(G 2881 -CAA)GGUA- ---------- GA-GCCAA-U CCC-C-AAAG -CU-G-GCC- UCAGUUCAGA 2941 U-CACAGGC- (UGCAAC-U- C)-GCCUGUG -UGAAGU-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -AGUAAU)-A GUG-CGUUG- AAUAC-GUU- CUC-GGG-GC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD63 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26250|g498455 library_source= unidentified soil bacterium from paddy field NB: UCGACGUGUGUUACAAGUGUCACGC at beginning of seq removed (not fit pattern) BASE COUNT 55 a 61 c 73 g 49 t 4138 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ......GG-G A-CC-G-CCG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-A-UC -UG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-GG -UA--CAAUG GGU-C-G-C- UA-AGC-C(G 2881 -CGA)GGUA- ---------- GA-GCCAA-U CCCG-CAAAG -CC-G-GUC- UCAGUUCAGA 2941 U-CACAGGC- (UGCAAC-C- C)-GCCUGUG -UGAAGU-UG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -ACU-AU)-A GUG-CGUUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD46 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26233|g498436 library_source= unidentified soil bacterium from paddy field BASE COUNT 60 a 68 c 78 g 57 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UCGC-C AC-GU----- ---------- ---------- ----(---GU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------AC|A 2701 U-GU-GU-C- A-CGU-GG-G A-CC-G-ACG --GU(-AU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C UUUAU-G-UC -CG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGG-C-AG -UA--CAAUG GGU-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCCC-AAAA -CU-G-UCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -AGU-AU)-A GUG-CGUUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD66 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26253|g498458 library_source= unidentified soil bacterium from paddy field BASE COUNT 61 a 69 c 77 g 56 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UCGC-U GC-GU----- ---------- ---------- ----(---GU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------AC|A 2701 A-GU-GU-C- A-CGC-AG-G A-CC-G-CCG --GU(-AU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-AG -UA--CAAUG GGU-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCCC-AAAA -CU-G-GCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -ACU-AU)-A GUG-CGUUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD62 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26249|g498454 library_source= unidentified soil bacterium from paddy field BASE COUNT 59 a 68 c 78 g 58 t 4113 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UCGC-U GC-GU----- ---------- ---------- ----(---GU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------AC|A 2701 A-GU-GU-C- A-CGC-AG-G A-CC-G-CCG --GU(-AU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UG--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGG-C-AG -UA--CAAUG GGU-U-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCCC-AAAA -CU-G-UCC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AAC 3001 GC-GCG-(UC -ACU-UA)-U GUG-CGUUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.3 ATOPOBIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.3 ATOPOBIUM_GROUP. ORGANISM 2.16.1.3 ATOPOBIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE2 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26255|g498388 library_source= unidentified soil bacterium from soybean field BASE COUNT 64 a 69 c 88 g 58 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA UUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-G-GUC- CCGGUUCGGA 2941 U-UGGAGGC- (UGAAAC-U- C)-GCCUCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCAAC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE7 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26259|g498393 library_source= unidentified soil bacterium from soybean field BASE COUNT 65 a 69 c 87 g 58 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA UUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- AA-GCGAA-U CCCAA-AAAA -CC-G-GUC- CCGGUUCGGA 2941 U-UGGAGGC- (UGAAAC-U- C)-GCCUCCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCAAC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD13 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26200|g498400 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 70 c 87 g 57 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA UUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCGGUUCGGA 2941 U-UGAAGGC- (UGAAAC-U- C)-GCCUUCA -UGAAGG-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-U CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.NPOH1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. nitropropanol-degrading str. nitropropanol-degrading bacterium NPOH1. ACCESSION No information KEYWORDS No information. SOURCE str. nitropropanol-degrading str. nitropropanol-degrading bacterium NPOH1. ORGANISM str. nitropropanol-degrading. REFERENCE 1 AUTHORS Anderson,R.C., Rasmussen,M.A. and Allison,M.J. TITLE Characteristics of a nitropropanol metabolizing bacterium isolated from the rumen JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43492|g1176423 isolate_name= nitropropanol-degrading bacterium NPOH1 BASE COUNT 301 a 398 c 471 g 215 t 2991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AAUAA C--------- ---------- ---------- ---------- 181 ---------- ---------- ----CCG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-CGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----UCAU- ---|----AG AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- CAA--CCU-U C-CCCC---C -GCAU-G-GG 421 -GAU-AA-CC G--------- ------GG-- C(-GAAA-)G -CCCG-G--C UAAUACC-CA 481 AU-ACU---- ---------- -------C-C GG-G--C-CC ---UCC-(-- --------GC 541 AU-------- -)-GGA---G GG-GC----C GG--GAAA-- ---G------ ---------- 601 --(------- --CCCAGG-- ---)------ ---------| --------C- G--GCG---- 661 ----GGGG-- AUG---G-|G GUCGC----- -GG|----CC C--AUUA-G- GUA-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G U|-GCC-CG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----GA-U-- CGG-N|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUUUU N-CGCNAU-- GG-GN-(NAA A)-CCC-UGA CGCN|-GCNA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--CU-AG --)GG-UUGU AAN--CCNC| UUUC-NG-CN 1021 --GG-GAA-- GA-------- ---------( -----AACN- ---------) ---------- 1081 ---------- ---------- U-GA-CGGN- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGNCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-UG- 1261 N-CC-AAN|C GGG---AUCU C-ANA-UC-C GG-GGG-C(- UC-A)A-CCU -CC-G--GC- 1321 -CGGA-UCCC G-AAC-UGNC C-GGCUC-GA GUU-----CG G-UA-GAGGA AGA-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGNAA)-UNC -GC-AGAU-A UU-GGGAAG- AACA-CCGA- 1441 -U-G-NC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 GCC--NC-GA CUGACN-CUG AG-G------ -------UG- C-GAAA-GC- CG-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CCG- N-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-A----- ---------- 1681 -(GCC-UU)- ---------- ---------- ---------- --------UC -CUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGN -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------G ---GGUG--- --A----AGC 1981 -CGG-G--(- GAAA-)-CCC -G-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ---------| AGC-CC-GCG |---C|A--G 2161 GU-GG-UGNA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCA- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGNC- 2821 C-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CCCCC-AAAG -CC-G-GCC- CCAGUUCGGA 2941 C-AGGAGGC- (UGCAAC-C- C)-GCCUCCU -CGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGU- CU-GC-ACCC -GAA-G-UCC 3121 C-CGG-C-CC -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-GG-GC-CG A-AGGU-GUG GAG-GU-GA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.lentum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium lentum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium lentum. ORGANISM Eubacterium lentum. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS amplification_primer= 3': AGAAAGGAGGTGATCC amplification_primer= 5': AGAGTTTGATYMTGGCTCAG NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome Amplification primers: BASE COUNT 333 a 414 c 509 g 241 t 2879 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------A UG---AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCG-CC (--CU----- ---------- ---------- 241 --------CG -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- CAU|----GA AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAC- CAA--CCU-G C-CCCU---U -GCUC-C-GG 421 -GAC-AA-CC U--------- ------UG-- G(-GAAA-)C -CGAG-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-C UC-G--C-CC ---CCC-(-- --------UC 541 CU-------- -)-GGG---G GG-CC----C GG--GAAA-- ---G------ ---------- 601 --(------- --CCCAGA-- ---)------ ---------| --------C- G--GCA---- 661 ----AGGG-- AUG---G-|G GUCGC----- -GG|----CC C--AUUA-G- GUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GCC-CG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----AAUU- ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GC-CU- 1261 C-UC-AAG|C GGG---AUCU C-UAA-UC-C GA-GGG-C(- UC-A)A-CCC -CC-G--GC- 1321 -CGGA-UCCC G-AAC-UGGG A-GGCUC-GA GUU-----CG G-UA-GAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CCUGCUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -G-------- -C-------- 1681 -(UCC-GC)C ---------- ---------- ---------- ---------- -CUCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-G- ---------A ---CGUG--- --A----AGC 1981 -CGG-G--(- GAAA-)-CCC -G-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GG-------- ---------| AGC-GU-CCG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCA- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- GA-GCGAA-U CCCUC-AAAG -CC-G-GCC- CCAGUUCGGA 2941 U-CGGAGGC- (UGCAAC-C- C)-GCCUCCG -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGU- AU-GC-ACCC -GAA-G-CCG 3121 C-CGG-C-CG -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGCG-G-A G-GC-GU-CG A-AGGU-GUG GAG-GG-UA- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cro.glomer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Coriobacterium glomerans. ACCESSION No information KEYWORDS No information. SOURCE Coriobacterium glomerans. ORGANISM Coriobacterium glomerans. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Coriobacterium and Atopobium are phylogenetic neighbors within the actinomycetes line of descent JOURNAL Syst. Appl. Microbiol. 17, 202-205 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79048|g479049 NB: GB entry has DSM 1435 (error) BASE COUNT 291 a 420 c 523 g 198 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GANC 121 G--GC-AC-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCG-CC (--CU----- ---------- ---------- 241 --------CG -)GG-CGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AA- ---|-GC--G AGUG-UCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGAC- CAA--CCU-G C-CCUG---C -GCUC-C-GG 421 -AAU-AG-CC G--------- ------CG-- G(-GAAA-)C -CGCG-G--G UAAUACC-GG 481 AU-GCG---- ---------- -------C-C GG-A--C-C- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- GG-CC----C GG-CGAAA-- ---G------ ---------- 601 --(------- --CUCCGG-- ---)------ ---------| --------C- G--GCG---- 661 ----CGGG-- AUG---G-|G GUCGC----- -GG|----CC C--AUCA-G- GUA-G---AC 721 GG-CG-GG-( GC-GAG-GG) -C-CCACC-G U|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACC ----GA-A-- CGG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GGA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGC AGA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----GAUC- ---------) ---------- 1081 ---------- ---------- A-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GC-CA- 1261 G-GC-AGG|C CGG---GCGU C-AAA-UC-C GG-GGG-C(- UC-A)A-CCC -CC-G--CU- 1321 -CGCG-CCCG G-AAC-CGCC C-GGCUC-GG GUC-----CG G-UA-UGGGA GGG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCCUCUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CCGACG-CUG AG-G------ -------CG- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CG-CU-- -------A|G -GU-GU-GGG -GG-GA---- ---------- 1681 -(-CG-A-)- ---------- ---------- ---------- -------UCC -CCCCG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGCGA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GCUG--- --A----AGC 1981 -CGG-G--(- GAGA-)-CCC -G-GUGG--- ---------- ---CC----- --(GG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGG-CU-GCG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-G |-CC--GCA- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-AA-CC-C- A-UGC-GG-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-UGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGGA-U CCCU--AAAG -CC-G-GCC- CCAGUUCGGA 2941 U-CGGGGNC- (UGCAAC-C- C)-GCCCCCG -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGU- CU-GC-ACCC -GAA-G-CCG 3121 C-GGG-C-CC -GA-CCA--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGNGG-G-A C-GC-GU-CG A-AGGU-CUU GAG-GG-CG- AGG-GGGG-U 3301 G---AAGUC. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.fossor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium fossor. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium fossor. ORGANISM Eubacterium fossor. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34620|g762803 Former RDP Sids: Eub.fosser ATCC 43386 = VPB 2127 = NCTC 11919 (T) BASE COUNT 341 a 350 c 480 g 277 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ AUUUGAACGG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-----A--U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCA-CU (--UU----- ---------- ---------- 241 --------CG -)GG-UGUGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- UAA|------ AGUG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUU---U -UCUU-U-GG 421 -GAU-AG-CU A--------- ------CG-- G(-GAAA-)C -CGUA-G--G UAAUACC-GA 481 AU-ACUU--- ---------- -------C-U UG-A--U-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- AA-AC----A AG-AGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GAA---- 661 ----AAGG-- AUG---N-|G CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- UUA------- -----UG-GG 781 U-AG-C-CG| -N-GUU--(G -AGA)-GACC ----GA-C-- CGG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GN-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGN| UUUC-AG-CA 1021 --GG-GAC-- GA-GG---CC --U------( ------ACA- ---------) -------AGG 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---NAAG U-UAA-AU-C NG-GGG-C(- UC-A)A-CCC -CN-G-NCC- 1321 -GCGU-UCCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCN--AU-AA CUGACG-CUG AG-G------ -------AG- C-NNAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(AUG-UA)- ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-NN-CC-N- G-UGC-GA-G A-CC-G-CCG --GN(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C NUUAU-G-UC -CU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-C-GG -CA--CAGCG GGA-U-G-C- GA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCCAA-U CCCUU-AAAG -CC-G-GCC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGU- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C-CC -NA-CCC--- ---------- ---------- -----(---- -GUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-AC-GC-CG A-AGGU-GUG GAG-GG-UA- AGG-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.minut2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium minutum. ACCESSION No information KEYWORDS No information. SOURCE Atopobium minutum. ORGANISM Atopobium minutum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59059 Former RDP Sids: L.minutus ATCC 33267 (T) = VPI 9428 = DSM 20586 = NCFB 2751 BASE COUNT 351 a 370 c 485 g 279 t 2891 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCUGAACGG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-----A--U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCAU-CU (--UU----- ---------- ---------- 241 --------U- -)AG-AUGUG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- UAA|------ AGUG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUU---U -UCUU-U-GG 421 -GAU-AG-CU A--------- ------CG-- G(-GAAA-)C -CGUG-G--G UAAUACC-GA 481 AU-AUU---- ---------- -------U-C UU-G--A-GU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A CA-CA----A GA--CAAA-- ---GCGU--- ---------- 601 --(------- ----CCU--- ---)------ ---------| ---ACG--C- G--GAA---- 661 ----AAGG-- AUG---G-|N CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- UUA------- -----UG-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACC ----GA-C-- CGG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCN-GC-NU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C-C- ---------( -----GCAA- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---UNAG U-UAA-AUCC GG-GGG-C(- UC-A)A-CCC -CC-G--UC- 1321 -CGCU-UCCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GN-GU-GGG -GG-G----- ---------- 1681 -(AUG-UA)- ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CC-C- G-UGC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-C-GG -CA--CAGCG GGA-A-G-C- AA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCCAA-U CCCUU-AAAG -CC-G-GCC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGU- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-GC-GC-CG A-AGGU-GUG GAG-GG-NN- AGG-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.minutu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium minutum. ACCESSION No information KEYWORDS No information. SOURCE Atopobium minutum. ORGANISM Atopobium minutum. REFERENCE 1 AUTHORS Collins,M.D. and Wallbanks,S. TITLE Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: Proposal for the creation of a new genus Atopobium JOURNAL FEMS Microbiol. Lett. 95, 235-240 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67148 NCFB 2751 = VPI 9428 = DSM 20586 = ATCC 33267 (T) NB: This was formerly known as Lactobacillus minutus BASE COUNT 343 a 362 c 474 g 273 t 2924 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.UUGAACGG AGAGUU(C-G A)N-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-----A--U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCAU-CU (--UU----- ---------- ---------- 241 --------U- -)AG-AUGUG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- UAA|------ AGUG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUU---U -UCUU-U-GG 421 -GAU-AG-CU A--------- ------CG-- G(-GAAA-)C -CGUG-G--G UAAUACC-GA 481 AU-AUU---- ---------- -------U-C UU-G--A-GU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A CA-CA----A GA--CAAA-- ---GCGU--- ---------- 601 --(------- ----CUA--- ---)------ ---------| -----G--C- G--GAA---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- UUA------- -----UG-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACC ----GA-C-- CGG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C-C- ---------( -----GCAA- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG--UAAGU U-AAA-UC-C GG-GGG-C(- UC-A)A-CCC -CC-G--UC- 1321 -CGCU-UCCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(AUG-UA)- ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CC-C- G-UGC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-C-GG -CA--CAGCG GGA-A-G-C- AA-ACU-U(G 2881 -CGA)AAGU- ---------- AA-GCCAA-U CCCUU-AAAG -CC-G-GCC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CUU- UN-GC-ACCC -GAA-G-UCG 3121 U-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-GC-GC-CG A-AG-U-GUG G......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.parvul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium parvulum str. 1246 ATCC 33793 (T). ACCESSION No information KEYWORDS No information. SOURCE Atopobium parvulum str. 1246 ATCC 33793 (T). ORGANISM Atopobium parvulum. REFERENCE 1 AUTHORS Collins,M.D. and Wallbanks,S. TITLE Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: Proposal for the creation of a new genus Atopobium JOURNAL FEMS Microbiol. Lett. 95, 235-240 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33793 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67150 ATCC 33793 (T) = NCFB 2897 = VPI 0546 isolate_name= 1246 BASE COUNT 314 a 342 c 444 g 248 t 3028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .....GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---U -UCAU-U-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -CGUG----A UAAUACC-GA 481 AU-ACU---- ---------- -------U-C GA-G--A-CU ---UCC-(-- --------GC 541 AU-------- -)-GGA---A GA-CU----C GA--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AGGG-- AUG---G-|- CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-UG| -G-GUU--(G -AGA)-GACC ----GA-C-- CAG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---GAGU U-AAA-UC-C GG-GGG-C(- UC-A)A-CCC -CC-G--CU- 1321 -CGCU-CUCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -GG-A----- ---------- 1681 -(GUA-UU)- ---------- ---------- ---------- --------UC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CC-C- A-UAC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAUG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CCCU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGA- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C--U -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-G-A G-AC-GC-CG A-AG-U-GUG GUU-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.parvu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium parvulum str. 1246 ATCC 33793 (T). ACCESSION No information KEYWORDS No information. SOURCE Atopobium parvulum str. 1246 ATCC 33793 (T). ORGANISM Atopobium parvulum. REFERENCE 1 AUTHORS Collins,M.D. and Wallbanks,S. TITLE Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: proposal for the creation of a new genus Atopobium. JOURNAL FEMS Microbiol. Lett. 95, 235-240 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33793 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: S44206 ATCC 33793 (T) = NCFB 2897 = VPI 0546 legacy_attribute= identical to, but longer than, X67150 isolate_name= 1246 BASE COUNT 330 a 351 c 456 g 259 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G-----A--U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGUGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- UAA|------ AGUG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---U -UCAU-U-GG 421 -GAU-AG-CC A--------- ------CG-- G(-GAAA-)C -CGUG----A UAAUACC-GA 481 AU-ACU---- ---------- -------U-C GA-G--A-CU ---UCC-(-- --------GC 541 AU-------- -)-GGA---A GA-CU----C GA--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AGGG-- AUG---G-|- CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-UG| -G-GUU--(G -AGA)-GACC ----GA-C-- CAG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---GAGU U-AAA-UC-C GG-GGG-C(- UC-A)A-CCC -CC-G--CU- 1321 -CGCU-CUCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -GG-A----- ---------- 1681 -(GUA-UU)- ---------- ---------- ---------- --------UC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CC-C- A-UAC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAUG GGC-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CCCU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGA- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C--U -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-G-A G-AC-GC-CG A-AG-U-GUG GUU-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.rimae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium rimae str. VPI D140H-11A NCFB 2896 (T). ACCESSION No information KEYWORDS No information. SOURCE Atopobium rimae str. VPI D140H-11A NCFB 2896 (T). ORGANISM Atopobium rimae. REFERENCE 1 AUTHORS Collins,M.D. and Wallbanks,S. TITLE Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: proposal for the creation of a new genus Atopobium . JOURNAL FEMS Microbiol. Lett. 95, 235-240 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI D140H-11A NCFB 2896 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67149 NCFB 2896 (T) = ATCC 49626 isolate_name= VPI D140H-11A BASE COUNT 317 a 343 c 440 g 249 t 3027 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .....GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUC---C -UCUU-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGAG-G--A UAAUACC-CG 481 AU-ACU---- ---------- -------U-C AA-U--G-UG ---GCC-(-- --------GC 541 AU-------- -)-GAC---G AC-AU----U GA--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---G-|- CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGA-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-UG| -G-GUU--(G -AGA)-GACC ----GA-C-- CAG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---GAGU U-AAA-UC-C GG-AGG-C(- UC-A)A-CCU -CC-G--CC- 1321 -CGCU-CCCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -AG-A----- ---------- 1681 -(AUA-CG)- ---------- ---------- ---------- --------UC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CC-U- A-UAC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAUG AGC-U-G-C- CA-ACC-C(G 2881 -CAA)GGGC- ---------- GA-GCGAA-U CUCU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGA- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C-CU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-G-A G-AC-GC-CG A-AG-U-GUG GUU-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Atp.rimae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Atopobium rimae str. VPI D140H-11A NCFB 2896 (T). ACCESSION No information KEYWORDS No information. SOURCE Atopobium rimae str. VPI D140H-11A NCFB 2896 (T). ORGANISM Atopobium rimae. REFERENCE 1 AUTHORS Collins,M.D. and Wallbanks,S. TITLE Comparative sequence analyses of the 16S rRNA genes of Lactobacillus minutus, Lactobacillus rimae and Streptococcus parvulus: proposal for the creation of a new genus Atopobium. JOURNAL FEMS Microbiol. Lett. 95, 235-240 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI D140H-11A NCFB 2896 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: S44205 NCFB 2896 (T) = ATCC 49626 legacy_attribute= identical to, but longer than, X67149 isolate_name= VPI D140H-11A BASE COUNT 325 a 346 c 447 g 258 t 3000 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .AAGCAC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GUGUG UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGUG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUC---C -UCUU-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGAG-G--A UAAUACC-CG 481 AU-ACU---- ---------- -------U-C AA-U--G-UG ---GCC-(-- --------GC 541 AU-------- -)-GAC---G AC-AU----U GA--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---G-|- CCCGC----- -GG|----CC U--GUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGA-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-GG 781 U-AG-C-UG| -G-GUU--(G -AGA)-GACC ----GA-C-- CAG-C|C-AG -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-GG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UU-AGG|U CGG---GAGU U-AAA-UC-C GG-AGG-C(- UC-A)A-CCU -CC-G--CC- 1321 -CGCU-CCCG A-UAC-CGGC A-GACUU-GA GUU-----UG G-UA-GGGGA AGG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -AG-A----- ---------- 1681 -(AUA-CG)- ---------- ---------- ---------- --------UC -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-U- ---------A ---GGUG--- --A----AGC 1981 -GGC-G--(- GAAA-)-CGU -C-GUGG--- ---------- ---CC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| AGC-CU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CC-U- A-UAC-GA-G A-CC-G-CCG --GC(-GU-C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -CA--CAAUG AGC-U-G-C- CA-ACC-C(G 2881 -CAA)GGGC- ---------- GA-GCGAA-U CUCU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-C- C)-GCCUCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGA- UU-GC-ACCC -GAA-G-UCG 3121 U-CGG-C-CU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGG-G-A G-AC-GC-CG A-AG-U-GUG GUU-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.4 ENV.PCON4_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.4 ENV.PCON4_ASSEMBLAGE. ORGANISM 2.16.1.4 ENV.PCON4_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON4.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON4. ORGANISM clone pCON4. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M ., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27850|g903921 BASE COUNT 150 a 148 c 204 g 129 t 3745 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... .CU-GGGC|G UAAA-GCGC- ACG-UAG-GC -G|-GA-UU- 1261 G-UU-AAG|U UAG---GGGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AAC- 1321 -UGCC-UUUA A-UAC-UGGC A-AUCUA-GA GUC-----CG G-AA-GAGGU GAG-U|GGAA 1381 CU-CCUAGU- GUA-GAG(-G CGGAA)-UUC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 UCC--GG-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-NN- CU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUG. .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-CG -AA-CC---- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGCG-C-A G-CC-GU-CG A-GGGU-GGG GCU-GG-UG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD28 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26215|g498416 library_source= unidentified soil bacterium from paddy field BASE COUNT 70 a 63 c 69 g 62 t 4112 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-A |-UC--CGA- 2281 UG--UUA--- ---------- ---------- ---------- ----(---AA ---AUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------A-C- U-UCG-GA-A A-CU-G-CCC --CG(-UUUC AA)-CGG-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -C-AGUC-AU CAU-G-UC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-G ACG--CUACA AUGGU-C-AC -UA--CAAUG GGU-U-G-C- CA-AAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CCCAACAAAA -GU-G-AUC- UCAGUUCAGA 2941 U-UGAGGGC- (UGAAAC-U- C)-GCCCUCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GU-GCA-(UC -AGCGUG)-- GCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.5 MARINE_CLONES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.5 MARINE_CLONES_GROUP. ORGANISM 2.16.1.5 MARINE_CLONES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16-9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pacific Ocean. ACCESSION No information KEYWORDS No information. SOURCE Pacific Ocean. ORGANISM Pacific Ocean. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11966 library_source= Pacific Ocean station 16 100m depth bacterioplankton DNA BASE COUNT 52 a 33 c 63 g 48 t 4180 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-UU-CA- 1261 --AC-AAG|U CGG---UCGU G-AAA-GU-U CA-GGG-C(- UU-A)A-CCC -UG-A-AAU- 1321 -GUCG-AUCG A-UACUGUUG U-GACUA-GG AUA-----UG G-UA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GCN(-N UGAAA)-UNC -GU-AGAU-A UU-CNNAGG- AACA-CCAA- 1441 -U-A-GC(-G AA-G)GCAG- -CUC...... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.BDA-5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sargasso Sea. ACCESSION No information KEYWORDS No information. SOURCE Sargasso Sea. ORGANISM Sargasso Sea. REFERENCE 1 AUTHORS Fuhrman,J.A., McCallum,K. and Davis,A.A. TITLE Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans JOURNAL Appl. Environ. Microbiol. 59, 1294-1302 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11945|g143858 (bases 1 to 460) library_source= Sargasso Sea 10m depth bacterioplankton DNA BASE COUNT 198 a 159 c 224 g 180 t 3615 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UC- 1261 A-AC-AAG|U CGG---UCGU G-AAA-GU-U CA-GGG-C(- UC-A)A-CCC -UG-A-AAU- 1321 -GUCG-AUCG A-UAC-UGUU GUGACUA-GG AUA-----CG G-CA-GAGGU GAG-U|GGAA 1381 UU-CCGAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-CGGAGG- AACA-CCAA- 1441 -U-U-GC(-G AA-G)GCAG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-UA UCGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GUG-UA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG A--AU-CA-- -------U|G -AU-GA-UGG .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .....CC--G 1861 C-A--CA-AG C--CGG-ACG A-U-GC-GGC -UUAAUU-CG -(AUGAUA-C C)--CGUAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|-U- ---------A ---GGGA--- -AA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUGUG-- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AU G-)------- UC-------- ---------| UCC-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-CG-C AUG--CUACA AUGGC-A-AG -UA--CAACG AGU-C-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCUU-AAAG -CU-U-GUC- UCAGUUCGGA 2941 U-AGGAGUC- (UGCAAC-U- C)-GACUCCU -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCAAA)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-GU UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A21 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A21.. ACCESSION No information KEYWORDS No information. SOURCE clone A21. ORGANISM clone A21. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08386|g475606 BASE COUNT 116 a 117 c 167 g 90 t 3886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-U A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GG-GA 1021 --GG-GAC-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-CA G-AA--GAAG ---------G 1141 -CCUGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-AC-AAG|U CGG---ACGU G-AAA-AC-C CA-GGG-C(- UU-A)A-CCC -CG-G-GAC- 1321 -GCCG-UUCG A-AAC-UGUC AUGACUA-GG GUC-----CG G-UA-GAGGU GAG-U|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GAGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CCGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-GGC -GA-GUU--- ---------- 1681 -(AAU-CC)A ---------- ---------- -U-------- -------ACU -UGCCG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A55 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A55.. ACCESSION No information KEYWORDS No information. SOURCE clone A55. ORGANISM clone A55. REFERENCE 1 AUTHORS Devereux,R. and Mundfrom,G. TITLE A phylogenetic tree of 16S rRNA sequences from sulfate-reducing bacteria in a sandy marine sediment JOURNAL Appl. Environ. Microbiol. 60, 3437-3439 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U08395|g475615 BASE COUNT 118 a 113 c 163 g 88 t 3894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)..CC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-GA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-CA G-AA--GAAG ---------G 1141 -CCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-C-- 1201 AAA-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-AC-AAG|U CGG---ACGU G-AAA-U--- CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -GCCG-UUCG A-AAC-UGUC AUGGCUA-GG GUC-----CG G-UA-GAGGU GAG-U|GGAA 1381 UC-CUAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUCCUG-- ---------- ---------- ---------G 1501 ACC--AA-UA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA A--CA-CU-- -------A|G -GU-GU-AGC -GG-GU---- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UGCUG-UGC 1741 CG--CA---- --GC-(UAA- ---N)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUA. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.TH3 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. TH3. str. TH3. ACCESSION No information KEYWORDS No information. SOURCE str. TH3. str. TH3. ORGANISM str. TH3. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79434|g173823 (bases 1 to 1365) isolate_name= TH3 BASE COUNT 324 a 387 c 478 g 240 t 2947 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCCAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GUAC 121 G--NU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGCCU-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...N-GCGA- 361 -A-CG-GG-U GCGU---AAC -AC-GUAGG- GAA--CCC-A C-CCCG---A -CGUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-GUG---- ---------- -------C-U CC-C--C-UG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C GA-GG----G AG--CAAA-- ---GCC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--CGA---- 661 ----CGGG-- ACG---N-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AG-CA 1021 --GG-GAC-- GA-------- ---------( -----AACU- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-GC-AAG|U CGG---AUGU G-AAA-UC-A CC-AGG-C(- UC-A)A-CCU -GG-U-AUC- 1321 -GCCA-UCCG A-UAC-UGCC A-UGCUU-GA GUC-----CG G-UA-GAGGA UCG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CGAUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CUC--- ---------- 1681 -(AUU-CG)A ---------- ---------- -C-------- -------GGG -CUCCG-UGC 1741 CG--AC---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---GGGA--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-CU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- G-UAG-GG-G A-CU-G-CCG --GA(-GU-U AA)-UUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-GCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- M)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGC-AC)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GYAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2003 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2003. str. SBR2003. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2003. str. SBR2003. ORGANISM str. SBR2003. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84548|g871669 isolate_name= SBR2003 BASE COUNT 94 a 106 c 132 g 60 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----G UC---CA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GAA- GAC|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G C-CCCG---A -AGAC-C-GG 421 -GAU-AA-CC C--------- ------CC-- C(-GAAA-)G -GAGA-G--C UAAUACC-GG 481 AU-ACC---- ---------- -------C-C CA-C--C-GA ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G AG--GAAAU- ---GG----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----C--C- G--CUU---- 661 ----CGGG-- AGG---G-|U CUCGC----- -GG|----NC U--AUCA-G- CUU-G---UU 721 GG-GG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-UGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A C-GAA--G-G CU(--CU-CG --)NN-UUGU AAA--CCCC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN1.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN1. ORGANISM clone SMKN1. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78653|g509722 BASE COUNT 99 a 101 c 137 g 73 t 3966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 ---GA-GA-U C--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--UG----- ---------- ---------- 241 --------CG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GA|-UC--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CGU-A C-CCCG---A -AGAC-U-GG 421 -AAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUGCC-GG 481 AU-ACCC--- ---------- -------U-G GC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- GA-GA----U CA-GGAAA-- ---G------ ---------- 601 --(------- --UCUUCU-- ---)------ ---------| --------C- G--CUU---- 661 ----CGGG-- AGC---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-CG-(GAA N)-GCC-UGN NGCA|-GCAA CGNC-GC-GU 961 G-C-GG-G-A U-NAA--G-G -C(--UU-CG --)GG-UUGU AAA--CCNN| UUUC-AG-CA 1021 --GG-GAC-- GA-------- ---------( ------AAU- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mth.parvic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microthrix parvicella.. ACCESSION No information KEYWORDS No information. SOURCE Microthrix parvicella. ORGANISM Microthrix parvicella. REFERENCE 1 AUTHORS Blackall,L.L., Seviour,E.M., Cunningham,M.A., Seviour,R.J. and Hugenholtz,P. TITLE Microthrix parvicella is a novel, deep branching member of the Actinomycetes subphylum JOURNAL Syst. Appl. Microbiol. 17, 513-518 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82546|g927436 BASE COUNT 341 a 344 c 436 g 259 t 2996 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----G -----CCAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UGAAC- --C|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G C-CCUG---G -AGUG-G-GG 421 -AAU-AA-CU C--------- ------GA-- A(-GAAA-)U -UCGA-G--C UAAUACC-GC 481 AU-ACC---- ---------- -------U-U CU-C--U-UC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G AG-UU----G AA--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----UAGG-- AGG---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA UGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--CCGC| UUUC-AG-UA 1021 --GG-GAC-- GA-------- ---------( -----AAAU- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -UCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UG- 1261 A-GU-AAG|U CAG---AUGU G-AAA-UC-U CA-GGG-C(- CC-A)A-CCC -UG-A-GCC- 1321 -UGCA-UUUG A-UAC-UGCU C-UGACUAGA GUC-----CG G-UA-GGGGA GUG-C|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -C-A-GC(-G AA-G)GCAG- -CACUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GAA--- ---------- 1681 -(CUC-AA)- ---------- ---------- -C-------- -------UCU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-G--UUG AAC-UA|-C- --------GU ---GGGA--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-CA-CGA |---U|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGCAAC)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD57 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26244|g498448 library_source= unidentified soil bacterium from paddy field BASE COUNT 63 a 72 c 87 g 57 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- AA-UCC-C(G 2881 -CGA)GGGU- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGC-CG -GAGU-CGC- -UAGUA-AUC 3001 CC-GGA-(UC -AGCUAC)-G CCG-GGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.6 FRANKIA. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.6 FRANKIA. ORGANISM 2.16.1.6 FRANKIA. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.6.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.6.1 GDP.OBSCURUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.6.1 GDP.OBSCURUS_SUBGROUP. ORGANISM 2.16.1.6.1 GDP.OBSCURUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gdp.obscu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geodermatophilus obscurus subsp. obscurus DSM 43160. ACCESSION No information KEYWORDS No information. SOURCE Geodermatophilus obscurus subsp. obscurus DSM 43160. ORGANISM Geodermatophilus obscurus. REFERENCE 1 AUTHORS Stackebrandt,E. Eppard,M., Krumbein,W.E., Koch,C., Rhiel,E., Staley,J.T. and TITLE characterization of actinomycetes isolated from dry soil, rocks, and monument surfaces Morphological, physiological, and molecular JOURNAL Arch. Microbiol. 166 (1), 12-22 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92356|g1550756 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 327 a 374 c 514 g 267 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--G--UG-A -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-GC (--UU----- ---------- ---------- 241 -------CGG -)GU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GGA- --U|--C--- AGUG-CCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-G C-CCCC---G -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CA-- A(-GAAA-)U -UGGG-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-C CG-C--U-G- ---CCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----C--C- G--GCU---- 661 ----GGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C-C- ---------( -----GUGA- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GAG-A(- UC-A)A-CUC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC C-GACUU-GA GUG-----UU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--AC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGC 1741 CG--CA---- --GA-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UA|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -AA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA G--GU-CGU- UA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CCUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-GGA G-CC-GU-CG A-GGCG-GGG AUC-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UUGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gdp.obscuo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geodermatophilus obscurus subsp. obscurus ATCC 25078. ACCESSION No information KEYWORDS No information. SOURCE Geodermatophilus obscurus subsp. obscurus ATCC 25078. ORGANISM Geodermatophilus obscurus. REFERENCE 1 AUTHORS Dawson,J., Evtushenko,L. and Misra,A.K. Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., TITLE and emendation of the family Frankiaceae Molecular phylogeny of the genus Frankia and related genera JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40620|g710516 geog_source= Amargosa Desert, Nevada biol_source= soil BASE COUNT 311 a 362 c 486 g 257 t 2960 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--G--UG-A -----A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------GGA- --U|--C--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCC---G -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CA-- A(-GAAA-)U -UGGG-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-C CG-C--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----C--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C-C- ---------( -----GUGA- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGCCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GAG-C(- UC-A)A-CUC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC C-GACUU-GA GUG-----UU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--AC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -C.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gdp.obscud 4376 bp RNA RNA 02-JUL-1998 DEFINITION Geodermatophilus obscurus subsp. dictyosporus str. G97. ACCESSION No information KEYWORDS No information. SOURCE Geodermatophilus obscurus subsp. dictyosporus str. G97. ORGANISM Geodermatophilus obscurus. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40621|g710517 geog_source= California biol_source= soil isolate_name= G97 BASE COUNT 308 a 357 c 481 g 265 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--C--UG-A U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-UC (--UU----- ---------- ---------- 241 --------CG -)GG-UGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------UG- -AU|--G--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCC---G -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CA-- A(-GAAA-)U -UGGG-G--C UAAUACC-GG 481 AU-GUUC--- ---------- -------A-C UG-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UG-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----C--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C UG-AGG-C(- UC-A)A-CCU -CA-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC G-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-UCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G -U-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGU--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- -----C---| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUCUG...- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gdp.obscur 4376 bp RNA RNA 22-JAN-1999 DEFINITION Geodermatophilus obscurus str. DSM43162. ACCESSION No information KEYWORDS No information. SOURCE Geodermatophilus obscurus str. DSM43162. ORGANISM Geodermatophilus obscurus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92357 BASE COUNT 324 a 380 c 509 g 264 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~CU|-G 61 GCUCAG-GAC -GAAC-CC-- UGGC-GGC-G -UGC-UU--A ACAC-AUCCA A-GUC-GAAC 121 G--U--UG-A -----a---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ccc-cc (--uu----- ---------- ---------- 241 --------cg -)gguggg-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------ggG- -AU|--G--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCC---G -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CA-- A(-GAAA-)U -UGGG-G--C UAAUACC-GG 481 AU-GUUC--- ---------- -------A-C UG-C--U-G- ---CCC-(-- --------GC 541 AU-------- -)-GGU---- CG-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----C--C- G--GCU---- 661 ----GGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C-c- ---------( -----guga- ---------) ---------g 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CGG---CUGU G-AAA-UC-C CG-GAG-C(- UC-A)A-CUC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC C-GACUU-GA GUG-----UU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--AC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -CGC-A--(- GAGA-)-UGC -G-GGGU--- ---------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CA-G-CCG --GG(-GU-C -A)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-C-UC -UA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-GG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUUC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -cggga-ggg agcc-gu-cg a-aggc-ggg auc-gg-cg- auu-ggga-c 3301 g---aaguc- guaa-caagg uagcc-gua- -(-----)-- ---------- ---------- 3361 ----|----- ---------- ---------- ---------- -|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Blc.aggreg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Blastococcus aggregatus. ACCESSION No information KEYWORDS No information. SOURCE Blastococcus aggregatus. ORGANISM Blastococcus aggregatus. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40614|g710497 ATCC 25902 = DSM 4725 (T) geog_source= Baltic Sea BASE COUNT 329 a 360 c 485 g 267 t 2935 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GGUGA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUC-CG (--CU----- ---------- ---------- 241 --------UG -)CG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GA- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUC---A -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CA-- A(-GAAA-)U -UGGG-G--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CG-C--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GC- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CUGU G-AAA-AC-C UG-AGG-C(- UC-A)A-CCU -CA-G-GCC- 1321 -UGCA-GUCG A-UAC-GAGC A-GACUA-GA GUG-----UU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--AC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -U-GGGU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGC-GGA UC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spUS4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AnpUS4. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AnpUS4. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Ganesh,G., Misra,A.K., Chapelon,C. and Normand,P. TITLE Morphological and molecular characterization of Frankia sp. isolates from nodules of Alnus nepalensis Don JOURNAL Arch. Microbiol. 161, 152-155 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70135|g546089 nat_host= Alnus nepalensis isolate_name= AnpUS4 BASE COUNT 56 a 63 c 92 g 57 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -U-GGGU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- --------G| UCC--U-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ms.mulpart 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microsphaera multipartita str. Y-104 JCM 9543. ACCESSION No information KEYWORDS No information. SOURCE Microsphaera multipartita str. Y-104 JCM 9543. ORGANISM Microsphaera multipartita. REFERENCE 1 AUTHORS Yoshimi,Y., Hiraishi,A. and Nakamura,K. TITLE Isolation and characterization of Microsphaera multipartita gen. nov., sp. nov., a polysaccharide-accumulating Gram-positive bacterium from activated sludge JOURNAL Int. J. Syst. Bacteriol. 46, 519-525 (1996) STANDARD No information COMMENTS Organism information Culture collection: JCM 9543 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50066|g773187 Former RDP Sids: str.Y104 isolate_name= Y-104 BASE COUNT 288 a 313 c 443 g 245 t 3087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUC---A -GCUU-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUUC--- ---------- -------A-U UG-U--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AU-G--- ---------( ---------- ---------) ---------- 1081 ---------- -------U-- A-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GCU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CGGG--- -AA----AG- 1981 -UCC-A--(- GAGA-)-UGG -U-UCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UNA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-A.. 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD6 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26193|g498451 library_source= unidentified soil bacterium from paddy field BASE COUNT 65 a 69 c 84 g 62 t 4096 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UC-G |-UCC-GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sch.polmor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporichthya polymorpha. ACCESSION No information KEYWORDS No information. SOURCE Sporichthya polymorpha. ORGANISM Sporichthya polymorpha. REFERENCE 1 AUTHORS Rainey,F., Schumann,P., Prauser,H., Toalster,R. and Stackebrandt,E. TITLE Sporichthya polymorpha represents a novel line of descent within the order Actinomycetales JOURNAL FEMS Microbiol. Lett. 109, 263-268 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72377|g535061 BASE COUNT 331 a 368 c 482 g 261 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GANC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---A -GCUC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-C--G-A- ---GCG-(-- --------GC 541 AU-------- -)-CGC---- UC-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-AC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCC- 1321 -UGCA-GUGG A-UAC-GGGC U-AGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGA--- -AA----CU- 1981 -GGC-A--(- GAGA-)-UGU -C-AGGU--- ---------- ---CC----- --(NC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UU-AC-ACCC -GAA-A-CCG 3121 G-UGG-C-CC -NA-CC---- ---------- ---------- -----(---- -CUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A A-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.6.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.6.2 ACIDOTHERMUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.6.2 ACIDOTHERMUS_ASSEMBLAGE. ORGANISM 2.16.1.6.2 ACIDOTHERMUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acdt.cellu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidothermus cellulolyticus. ACCESSION No information KEYWORDS No information. SOURCE Acidothermus cellulolyticus. ORGANISM Acidothermus cellulolyticus. REFERENCE 1 AUTHORS Rainey,F. and Stackebrandt,E. TITLE Phylogenetic evidence for the classification of Acidothermus cellulolyticus into the subphylum of actinomycetes JOURNAL FEMS Microbiol. Lett. 108, 27-30 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70635 BASE COUNT 286 a 328 c 432 g 221 t 3109 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGAC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG-AN-- -----AG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AC- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCCC---U -GCNC-C-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUGC--- ---------- -------A-C CU-C--G-G- ---GUG-(-- --------GC 541 AU-------- -)-CAC---- CU-GA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AN-C-CG| -G-CCU--(G -AGA)-GGUC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-NC-(GAA A)-GCC-UGA CGCA|-GCGA CNCC-GC-GU 961 G-G-GG---A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-CA 1021 --AG-AAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGUU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|C UCG....... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... ...A-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGNNA)-UGC -AC-AGAU-A UC-NGGAGG- AACA-CCGG- 1441 -U-G-UC(-G AA-G)GCGG- -GUCNCUG-- ---------- ---------- ---------G 1501 UCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 --GC-A--(- GAGA-)-UGC -C-GGGU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-G- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-AC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spAg45 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Ag45/Mut15. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Ag45/Mut15. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Hahn,D.R., Lechevalier,M.P., Fischer,A. and Stackebrandt,E. TITLE Evidence for a close phylogenetic relationship between members of the genera Frankia, Geodermatophilus, and 'Blastococcus' and emendation of the family Frankiaceae JOURNAL Syst. Appl. Microbiol. 11, 236-242 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53209 (bases 1 to 1293) isolate_name= Ag45/Mut15 BASE COUNT 309 a 343 c 461 g 249 t 3014 others ORIGIN 1 .......... .......... .......... ..NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-GC (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .........A -GCAC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-UAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUC---- ---------- -------A-C AU-U--G-C- ---CGG-(-- --------UC 541 AU-------- -)-CUG---- -U-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G---CAAU-- -G-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GGAG |-GGUG-C-- 1201 GAG-CGUGGU CC-GGAAUUA -UU-GGCG|G UAAA-GAGC- UUG-UAG-GC -G|-GC-CU- 1261 G-UC-ACG|U CGG---CUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GACCA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GG- 1561 UC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--C----- --GC-(UAA- ---C)G-CA- UUAA--CGCC C|C|G-CCU- U-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GN-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AU-AUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGAU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| G-U-CU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ---U(---CA ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGU- 2821 C-UGA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UU UUGUA----C 3061 ACACCGCUU- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGC-C--- -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spAgKG 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AgKG'4/84. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AgKG'4/84. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE nodules of Datisca cannabina Phylogenetic studies on uncultured Frankia populations in JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D.L. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18976|g305253 isolate_name= AgKG'4/84 BASE COUNT 207 a 232 c 328 g 159 t 3450 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUNG--- ---------- -------A-C AU-C--A-C- ---UGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCNAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CN---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGU--- ---------- ---CC----- --(GCN---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Cequi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. D11 ORS 020602. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. D11 ORS 020602. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74484 nat_host= Casuarina equisetifolia from Dakar (Senegal) isolate_name= D11 BASE COUNT 56 a 61 c 94 g 57 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Cspino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Col ORS 060501. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Col ORS 060501. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74480 nat_host= Colletia spinosissima from Argentina isolate_name= Col BASE COUNT 56 a 61 c 95 g 56 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---GU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Eumbel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. EUN1f ULQ 132500106. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. EUN1f ULQ 132500106. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74481 nat_host= Elaeagnus umbellata from Illinois isolate_name= EUN1f NB: referred to as 'genomic species 6' in paper BASE COUNT 56 a 61 c 94 g 56 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Hrham2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. CH ORS 140102. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. CH ORS 140102. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74483 nat_host= Hippophae rhamnoides isolate_name= CH BASE COUNT 56 a 62 c 94 g 56 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.SCN10a 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. SCN10a. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. SCN10a. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40619|g710514 legacy_attribute= Elaeagnus infective; in tree designation FE-SCN10a isolate_name= SCN10a BASE COUNT 316 a 370 c 499 g 257 t 2934 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCA---A -GCUC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-C--G-U- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GG-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Hrhamn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. HRN18a ULF 140101801. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. HRN18a ULF 140101801. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74482 nat_host= Hippophae rhamnoides from Alps, France isolate_name= HRN18a BASE COUNT 57 a 61 c 94 g 56 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Eangus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Ea1-12 ULF 130100112. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Ea1-12 ULF 130100112. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74479 nat_host= Elaeagnus angustifolia from Ecully, France isolate_name= Ea1-12 NB: Frankia sp. str. HRX401a and Frankia sp. str. CeI1 have the same sequence as Fran.Eangus referred to as 'genomic species 4' in paper BASE COUNT 57 a 61 c 93 g 57 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spEa1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Ea1-28. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Ea1-28. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40618|g710513 legacy_attribute= Elaeagnus infective; in tree designation FE-Ea12 isolate_name= Ea1-28 BASE COUNT 320 a 372 c 498 g 256 t 2930 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCA---A -GCUC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-C--A-U- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-CUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spHR27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. HR27-14. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. HR27-14. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40617|g710512 legacy_attribute= Elaeagnus infective; in tree designation FE-Hr27-14 isolate_name= HR27-14 BASE COUNT 320 a 371 c 498 g 257 t 2930 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCA---A -GCUC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-C--A-U- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GAGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spAgB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AgB1-9. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AgB1-9. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40611|g807623 legacy_attribute= Alnus infective; in tree designation FA-AgB1-9 isolate_name= AgB1-9 BASE COUNT 333 a 373 c 496 g 262 t 2912 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCA---G -ACUU-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GA 481 AU-AUU---- ---------- -------C-A CA-U--CUU- ---CGG-(-- --------GC 541 AU-------- -)-CUG---G UG-GU----G UG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----C- U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAA- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCCCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-CGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------G ---GGGA--- -AA----UCC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGU--- C--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- AG-------- -----G---| GUC-CU--CA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UA -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CUC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spDc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Dc2 atypical. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Dc2 atypical. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE Phylogenetic studies on uncultured Frankia populations in nodules of Datisca cannabina JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D.L. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18978 biol_source= Datisca cannabina root nodules isolate_name= Dc2 atypical BASE COUNT 204 a 233 c 331 g 160 t 3448 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCA---G -GCUC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUUC--- ---------- -------A-C AU-G--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GG-UG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUC---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGCG|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-U CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCNAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGAAG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------G ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GG-------- -----G---| GUC-CC-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Cnepa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Cn7 atypical. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Cn7 atypical. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE Phylogenetic studies on uncultured Frankia populations in nodules of Datisca cannabina JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18982 legacy_attribute= endophyte in Coriaria nepalensis root nodules isolate_name= Cn7 atypical BASE COUNT 204 a 234 c 328 g 163 t 3447 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCA---G -GCUC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUUC--- ---------- -------A-C AC-C--U-U- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCUAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------U ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GG-------- -----G---| GUC-CA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spCn3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Cn3 atypical. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Cn3 atypical. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE Phylogenetic studies on uncultured Frankia populations in nodules of Datisca cannabina JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D.L. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18977 biol_source= Coriaria nepalensis root nodules isolate_name= Cn3 atypical BASE COUNT 204 a 229 c 329 g 165 t 3449 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCG---A -GCUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUNG--- ---------- -------A-C AU-U--G-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UUCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA G)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCNAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GG-------- -----G---| GUC-CC-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Ptride 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. PtI1 DDB 17020110. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. PtI1 DDB 17020110. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74487 nat_host= Purshia tridentata from Wyoming isolate_name= PtI1 BASE COUNT 54 a 62 c 96 g 56 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------G ---GGGA--- -AA----UCC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GG-------- ---------| GUC-CC-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Arugos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. ARgP5(AG) ULQ 0132105009. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. ARgP5(AG) ULQ 0132105009. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74477 nat_host= Alnus rugosa from Quebec (Canada) isolate_name= ARgP5(AG) BASE COUNT 56 a 63 c 96 g 53 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spARgP 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. ARgP5. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. ARgP5. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40612|g710509 legacy_attribute= Alnus infective; in tree designation FA-ARgP5 isolate_name= ARgP5 BASE COUNT 315 a 372 c 505 g 256 t 2928 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -UCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-U--G-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GAU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-UCU- G-GGGAGUAC 1801 GGA-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spAVN1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AVN17s. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AVN17s. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40613|g710510 legacy_attribute= Alnus infective; in tree designation FA-AVN17s isolate_name= AVN17s BASE COUNT 317 a 378 c 503 g 250 t 2928 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AC-C--U-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Aviri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AVN17o ULF 014101715. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AVN17o ULF 014101715. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74476 nat_host= Alnus viridis from La Toussuire (France) isolate_name= AVN17o NB: Frankia sp. str. AV22c, Frankia sp. str. AIN13a, Frankia sp. str. AVN42a all have the same sequence as Fra.Aviri2 BASE COUNT 57 a 62 c 95 g 54 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Avirid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74478 BASE COUNT 57 a 62 c 94 g 55 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spCeD2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. CeD. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. CeD. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74485|g148670 isolate_name= CeD BASE COUNT 56 a 63 c 95 g 54 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spORS 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. CeD ORS 020606. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. CeD ORS 020606. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Cournoyer,B., Simonet,P. and Nazaret,S. TITLE Analysis of a ribosomal RNA operon in the actinomycete Frankia JOURNAL Gene 111, 119-124 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55343 nat_host= Casuarina equisetifolia from Dakar (Senegal) isolate_name= CeD BASE COUNT 328 a 387 c 527 g 270 t 2864 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-U--G-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UU-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Cequis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. M2 ORS 020609. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. M2 ORS 020609. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74486 nat_host= Casuarina equisetifolia from Madagascar isolate_name= M2 BASE COUNT 55 a 64 c 95 g 53 t 4109 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCC 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGN---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spN14a 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. AcN14a. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. AcN14a. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Johnson,D.A. and Prud'homme,M. TITLE Analysis of a rRNA operon from Frankia strain AcN14a JOURNAL ThesisBiology, University of Ottawa (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M88466 isolate_name= AcN14a BASE COUNT 331 a 388 c 523 g 267 t 2867 others ORIGIN 1 .......... .......... .......... ...UUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C GC-U--A-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spArI4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. ArI4. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. ArI4. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11307 isolate_name= ArI4 BASE COUNT 316 a 364 c 505 g 250 t 2941 others ORIGIN 1 .......... .......... .......... ..NUUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGN- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AC-U--G-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGN-- AUG---G-|- C-CGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 G-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-ACC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G GC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-A--C -G-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-GA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -G-------- -------GCC -UCC-G-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC N|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GC-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GGC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-NCCC -GAA-G-C-G 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spACoN 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. ACoN24d. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. ACoN24d. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40610|g710507 legacy_attribute= Alnus infective; in tree designation FA-ACoN24d isolate_name= ACoN24d BASE COUNT 323 a 376 c 507 g 256 t 2914 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AC-U--G-C- ---UGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCNCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAG....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.alni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia alni str. ArI3 HFP 013003. ACCESSION No information KEYWORDS No information. SOURCE Frankia alni str. ArI3 HFP 013003. ORGANISM Frankia alni. REFERENCE 1 AUTHORS Nazaret,S., Cournoyer,B., Normand,P. and Simonet,P. TITLE Phylogenetic relationships among Frankia genomic species determined by use of amplified 16S rDNA sequences JOURNAL J. Bacteriol. 173, 4072-4078 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M74475 nat_host= Alnus rubra from Oregon isolate_name= ArI3 NB: Frankia alni str. AcoN24d, Frankia alni str. Ar24O2, Frankia alni str. Ar24H3, Frankia alni str. ArgN22d, Frankia alni str. ACN1(AG), Frankia sp. str. Ar24H5, Frankia sp. str. Mg602(AG), Frankia sp. str. TN18b(AC), Frankia sp. str. AgN24IIh, Frankia sp. str. AcoI5, Frankia sp. str. AcoI8, Frankia sp. str. AcoI9 all have the same sequence as Fra.alni BASE COUNT 57 a 62 c 94 g 55 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A U......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.myrica 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia "myricanod".. ACCESSION No information KEYWORDS No information. SOURCE Frankia "myricanod". ORGANISM Frankia "myricanod". REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40622|g710515 geog_source= Lawjinrew, Meghalaya, India BASE COUNT 326 a 379 c 505 g 254 t 2912 others ORIGIN 1 .......... .......... .......... .......... ....CU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-GC (--UU----- ---------- ---------- 241 --------CG -)GC-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -AAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AUG---- ---------- -------A-C AU-C--A-C- ---UGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-AA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GUC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spCori 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Nick,G., Paget,E., Simonet,P., Moiroud,A. and Normand,P. TITLE The nodular endophytes of Coriaria spp. form a distinct lineage within the genus Frankia JOURNAL Mol. Ecol. 1 (3), 175-181 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70679|g546732 BASE COUNT 53 a 58 c 81 g 50 t 4134 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........U UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-N---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --G.(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Dcanna 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE Phylogenetic studies on uncultured Frankia populations in nodules of Datisca cannabina JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D.L. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18979 legacy_attribute= biovar:endophyte in Datisca cannabina root nodules BASE COUNT 206 a 229 c 329 g 163 t 3449 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCG---A -GCUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUNG--- ---------- -------A-C AU-U--G-C- ---CGG-(-- --------GC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-ACG|U CGG---CUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GCG- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCNAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NA A-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CGUG |U...(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spDrya 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. Dryas. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. Dryas. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40616|g710511 geog_source= Gaspe, Canada biol_source= Dryas drummondii isolate_name= Dryas BASE COUNT 322 a 366 c 498 g 261 t 2929 others ORIGIN 1 .......... .......... .......... .......... .AAGCU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---A -GCUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-U--A-C- ---UGG-(-- --------AC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-ACG|U CGG---CUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GCG- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -UU--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.Cnepal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp.. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Mirza,M.S., Hahn,D., Dobritsa,S.V. and Akkermans,A.D.L. TITLE Phylogenetic studies on uncultured Frankia populations in nodules of Datisca cannabina JOURNAL Can. J. Microbiol. 40, 313-318 (1994) STANDARD No information REFERENCE 2 AUTHORS Mirza,S., Hahn,D. and Akkermans,A.D. TITLE Isolation and characterization of Frankia strains from Coriaria nepalensis JOURNAL Syst. Appl. Microbiol. 15, 289-295 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L18981 legacy_attribute= biovar:endophyte in Coriaria nepalensis root nodules BASE COUNT 208 a 229 c 327 g 164 t 3448 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .AA--CCU-G C-CCCG---A -GCUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUNG--- ---------- -------A-C AC-U--A-C- ---UGG-(-- --------AC 541 AU-------- -)-CUG---- GU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---CUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GCG- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUC-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GCUAGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUA AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---GGGA--- -AA----UCU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NA A-)------- GG-------- ---------| GCU-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.verru2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura verrucosospora. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura verrucosospora. ORGANISM Actinomadura verrucosospora. REFERENCE 1 AUTHORS Itoh,T., Kudo,T., Oyaizu,H. and Seino,A. TITLE A. glomerata sp. nov., and A. longicatena sp. nov. JOURNAL Actinomycetol. 9, 164-177 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50667|g1208404 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 294 a 317 c 453 g 247 t 3065 others ORIGIN 1 -......... .......... .......... .......... .....UU(UG A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CN -)GN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--N AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -NAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C SA-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAU---C GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUNNN-- ---)------ ---------| --------Y- N--GUU---- 661 ----GGGG-- AUG---G-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCNCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NAC- G-CC-GC--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UN|-G- ---------C ---CGGA--- -AA----AC- 1981 -AUN-A--(- GAGA-)-UGG -U-GGGUC-- ---------- ---CU----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UN--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUN 3001 GC-AGAN(NC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7 STREPTOSPORANGIUM_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7 STREPTOSPORANGIUM_AND_RELATIVES. ORGANISM 2.16.1.7 STREPTOSPORANGIUM_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.1 AMD.MADURAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.1 AMD.MADURAE_SUBGROUP. ORGANISM 2.16.1.7.1 AMD.MADURAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.coerul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura coerulea. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura coerulea. ORGANISM Actinomadura coerulea. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49002 BASE COUNT 306 a 353 c 490 g 260 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAU---C GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UC 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UC-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.citrea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura citrea. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura citrea. ORGANISM Actinomadura citrea. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49001 BASE COUNT 307 a 351 c 489 g 263 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-GUA---- ---------- -------A-C CA-C--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---C GG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAA-UA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|-G- ---------C ---CGGA--- -AA----ACC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---C(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.macra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura macra. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura macra. ORGANISM Actinomadura macra. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49009 BASE COUNT 299 a 345 c 492 g 267 t 2973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------U- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------AG- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UG-C--G-U- ---CAC-(-- --------GC 541 AU-------- -)-GUG---- GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA G)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-G) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAG)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|-G- ---------C ---CGGA--- -AA----CCA 1981 --GC-A--(- GAGA-)-UGU ---UGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.verruc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura verrucosospora. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura verrucosospora. ORGANISM Actinomadura verrucosospora. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49011 BASE COUNT 305 a 353 c 491 g 262 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAU---C GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC GAGA-C-UCC -(UACG)--G GAG-GC-AGG C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-UGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----CAU 1981 ---C-A--(- GAGA-)-UGU -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CACC--- ---------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.lutflu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura luteofluorescens. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura luteofluorescens. ORGANISM Actinomadura luteofluorescens. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49008 BASE COUNT 304 a 351 c 492 g 262 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUA---- ---------- -------A-C CA-C--U-G- ---GUC-(-- --------UC 541 AU-------- -)-GAU---C GG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG GG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----CAU 1981 ---C-A--(- GAGA-)-UGU -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AGCGAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUG----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.rugato 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura rugatobispora. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura rugatobispora. ORGANISM Actinomadura rugatobispora. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49010 BASE COUNT 301 a 353 c 492 g 260 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CC-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---G UG-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GGGUUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CCG---UCGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CUG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GCA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGAA--- -AA----CU- 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCGU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-GCG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.fulves 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura fulvescens str. IFO 14347 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinomadura fulvescens str. IFO 14347 (T). ORGANISM Actinomadura fulvescens. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49005 isolate_name= IFO 14347 (T) BASE COUNT 309 a 352 c 492 g 262 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--U-C- ---AAG-(-- --------GC 541 AU-------- -)-CUU---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CUG---UCGU G-AAA-GC-- CA-CAG-C(- UU-A)A-CUG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----A-- 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAA-CAC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GUGGUUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CAG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- --UGUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.atramn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura atramentaria. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura atramentaria. ORGANISM Actinomadura atramentaria. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49000 BASE COUNT 305 a 357 c 492 g 255 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----C--CC (--UU----- ---------- ---------- 241 --------CG -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-GCG---- ---------- -------A-C CA-C--U-G- ---CAG-(-- --------GC 541 AU-A------ -)-CUG---U UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CA-CAG-C(- UU-A)A-CUG -UG-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GGCUA-GA GGC-----AG C-UA-GGGGA GCA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCUCUG-- ---------- ---------- ---------G 1501 GGC--UG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCC 1981 --UC-A--(- GAGA-)-UGG -G-GGU---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGC-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.madur2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura madurae. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura madurae. ORGANISM Actinomadura madurae. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97889|g1666544 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 313 a 361 c 500 g 271 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-C GC-A--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|-G- ---------C ---CGGA--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.madura 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura madurae. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura madurae. ORGANISM Actinomadura madurae. REFERENCE 1 AUTHORS Itoh,T., Kudo,T., Oyaizu,H. and Seino,A. TITLE A. glomerata sp. nov., and A. longicatena sp. nov. JOURNAL Actinomycetol. 9, 164-177 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50668|g1208405 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 291 a 318 c 460 g 253 t 3054 others ORIGIN 1 .......... .......... .......... .......... .....U(Y-G A)U-CCU|-G 61 GCNCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CN -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-C GC-A--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUNNU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----NAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|-G- ---------C ---CGGA--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGUC-- ---------- ---CU----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UN--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-NAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUNG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGAN(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.kijan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura kijaniata. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura kijaniata. ORGANISM Actinomadura kijaniata. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97890|g1666543 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 318 a 371 c 499 g 260 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---G UG-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CUCA|-GCGA CACC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GCA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGG -GUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUCC- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.kijani 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura kijaniata. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura kijaniata. ORGANISM Actinomadura kijaniata. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49006 BASE COUNT 304 a 357 c 495 g 253 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---G UG-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-- CA-CGG-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GCA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGG -GUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC----(- GAGA-)-UGU -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAC-- ---------- ---------- -----(---- --CGUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.cremea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura cremea subsp. rifamycini IFO 14183 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinomadura cremea subsp. rifamycini IFO 14183 (T). ORGANISM Actinomadura cremea. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49003 BASE COUNT 312 a 353 c 485 g 260 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GG UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -CAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-U CC-A--U-C- --UCUC-(-- --------UC 541 CU-------- -)-GUGA--U GA-UG----G -U-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG -G)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-GA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-G--C CA-CGC-C(- UU-A)A-CCG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-CGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCC 1981 -AUC-A--(- GAGA-)-UGG -U-GGGU--- C--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----G---| -CC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGU|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.globos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura glomerata str. I-226 JCM 9376. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura glomerata str. I-226 JCM 9376. ORGANISM Actinomadura glomerata. REFERENCE 1 AUTHORS Itoh,T., Kudo,T., Oyaizu,H. and Seino,A. TITLE A. glomerata sp. nov., and A. longicatena sp. nov. JOURNAL Actinomycetol. 9, 164-177 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 9376 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50660|g1208407 isolate_name= I-226 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 293 a 335 c 457 g 252 t 3039 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CN -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--N NGCG-GCGA- 361 -A-CG-GG-U NAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-C--C-G- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-AU----- ---------( ------CU-- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---ACGU G-AAA-GC-U CA-CGG-C(- UU-A)A-CCG -UG-A-GUC- 1321 -UGCG-UUCG A-UAC-GGGC A-GGCUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUNAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAA-CAC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GUGGUUGG|G 2701 G--A-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGAN(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- SCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.libano 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura libanotica. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura libanotica. ORGANISM Actinomadura libanotica. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49007 BASE COUNT 315 a 360 c 485 g 244 t 2972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-A--C--- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-AG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GGGG-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-AA----- ---------( ------ACA- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U CG-AGG-C(- UU-A)A-CCU -CG-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G--A-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CAG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura aurantiaca. ORGANISM Actinomadura aurantiaca. REFERENCE 1 AUTHORS Itoh,T., Kudo,T., Oyaizu,H. and Seino,A. TITLE A. glomerata sp. nov., and A. longicatena sp. nov. JOURNAL Actinomycetol. 9, 164-177 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50669|g1208406 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 296 a 326 c 446 g 242 t 3066 others ORIGIN 1 .......... .......... .......... .......... ..NGUU(U-G A)U-CCU|-G 61 GCUNAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 N--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CN -)G------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--N AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -NAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--C-C- ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUCUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CNACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAC-- GA-AU----- ---------( ------CAA- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U CR-AGG-C(- UU-A)A-CCU -CG-N-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GACUA-GA GGC-----AG G-UA-GNGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCNG- -UUCNNNG-- ---------- ---------- ---------G 1501 GCC--UG-UA CUGACG-CNG AG-G------ -------AG- C-GAAA-GC- GU-NNN-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----YAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ANNCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UN-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--NGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCNA -UGAAGU-CG -GAGU-NGC- -UAGUA-AUN 3001 GC-AGAN(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- NCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tmms.curva 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermomonospora curvata. ACCESSION No information KEYWORDS No information. SOURCE Thermomonospora curvata. ORGANISM Thermomonospora curvata. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97893|g1666674 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 311 a 369 c 510 g 269 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUUC--- ---------- -------A-C CU-C---CU- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GUUC--- ----CC---- 601 --(------- --UCUUUUU- ---)------ -----GG--| ---GGG--UU CG-GUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-CA 1021 --CC-GAC-- GA-AG-U--- ---------( ------UUG- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-GGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-GUUU 1321 -GCGG-UGGA U-ACG-GGCA G-G-CUA-GA GGC-----AG G-UA-GGGGA GCA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-UC---- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------A ---CCCG--- AAA----ACC 1981 -UGC-A--(- GAGA-)-UGC -A-GGGU--- ---------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GGG------- ---------| CGG-GU--GA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-AA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amd.echino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomadura echinospora. ACCESSION No information KEYWORDS No information. SOURCE Actinomadura echinospora. ORGANISM Actinomadura echinospora. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49004 BASE COUNT 300 a 351 c 494 g 256 t 2975 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C---UU- ---ACG-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CC-GAC-- GA-A------ ---------( ------UCU- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-GGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CCG---UCGU G-AAA-G--C CA-CGG-C(- UC-A)A-CCG -UG-G-GUUG 1321 -GCGG-UGGA U-ACG-GGCA G-G-CUA-GA GGC-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-UC---- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------A ---CCCA--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- GG-------- ---------| CGG-GU--GA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.2 NRP.DASSONVILLEI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.2 NRP.DASSONVILLEI_SUBGROUP. ORGANISM 2.16.1.7.2 NRP.DASSONVILLEI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.albrub 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis alborubida. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis alborubida. ORGANISM Nocardiopsis alborubida. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97882|g1666653 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 359 c 501 g 282 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-C-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ----UUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CC --CGG-AG-( -----UUCU- ---------) -CUU-CG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACU 1981 -CGC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.antarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis antarctica. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis antarctica. ORGANISM Nocardiopsis antarctica. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97885|g1666656 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 356 c 500 g 285 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ----UUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CU --CGA-AG-( -----UUUU- ---------) -CUU-CG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACU 1981 -CGC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.dasson 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis dassonvillei. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis dassonvillei. ORGANISM Nocardiopsis dassonvillei. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97886|g1666657 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 357 c 500 g 284 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ----UUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CU --UCC-AG-( -----UUCU- ---------) -CUG-GA-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACU 1981 -CGC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.lucent 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis lucentensis. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis lucentensis. ORGANISM Nocardiopsis lucentensis. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97888|g1666659 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 318 a 360 c 501 g 282 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-C-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-A--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ----UUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CU --CCG-GG-( -----UUCU- ---------) -CCC-GG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GU G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.alba1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis alba. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis alba. ORGANISM Nocardiopsis alba. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97883|g1666654 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 357 c 501 g 286 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-U--C-C- ---GCC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CU --CCG-GG-( -----UUCU- ---------) -CUC-GG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACC 1981 -UGU-A--(- GAGA-)-UAC -A-GGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUCG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.lister 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis listeri. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis listeri. ORGANISM Nocardiopsis listeri. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97887|g1666658 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 321 a 357 c 499 g 286 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------GC-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G UG-CG----A GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CU-AAC-- GC-AG-G-CU --CCA-CG-( -----UUCU- ---------) -CGU-GG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-CGCUA-GA GGU-----AG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CU---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACC 1981 -UGU-A--(- GAGA-)-UAC -A-GGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-GAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GGGAGG-G-A A-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nrp.alba2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardiopsis alba. ACCESSION No information KEYWORDS No information. SOURCE Nocardiopsis alba. ORGANISM Nocardiopsis alba. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97884|g1666655 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 324 a 356 c 496 g 285 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-C-GG 421 -GAU-AA-GC G--------- ------GU-- G(-GAAA-)C -GCCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---G -G-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUAU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UUA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AC-CA 1021 --CC-AAC-- GC-AG-G-CU --CCA-CG-( -----UUCU- ---------) -CGU-GG-GG 1081 ---------- -------U-- U-GA-CG-GU A-GGU-G-GG G-AA--UAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-AU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG A-UAC-GGGC A-UGCUA-GA GGU-----AG G-UA-GGGGA AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGU--- -GG----ACC 1981 -UGU-A--(- GAGA-)-UAC -A-GGGU--- ---------- ---CA----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- UG-------- ---------| GUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGCGU-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-A-CUU 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUCG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-UG-AG-UG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.3 STS.NONDIASTATICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.3 STS.NONDIASTATICUM_SUBGROUP. ORGANISM 2.16.1.7.3 STS.NONDIASTATICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.roseu5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium roseum. ORGANISM Streptosporangium roseum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48996 BASE COUNT 307 a 349 c 489 g 268 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UCG-- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--G-U- ---UCC-(-- --------CG 541 AU-------- -)-GGG---A UG-GG---UG GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--UUU---- 661 ----GGGG-- AUG---G-|A CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C C--CGGA--- -AA-----CA 1981 -CU--A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU C--------- ---------- ----(---CU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --UUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-GGA G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.roseum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium roseum. ORGANISM Streptosporangium roseum. REFERENCE 1 AUTHORS Kemmerling,C., Guertler,H., Kroppenstedt,R., Toalster,R. and Stackebrandt,E. TITLE Evidence for the phylogenetic heterogeneity of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 16, 369-372 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70425|g535079 BASE COUNT 291 a 325 c 451 g 249 t 3060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-A...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .G-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--UUU---- 661 ----GGGG-- AUG---G-|A CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AN-N--- ---------( ---------- ---------) ---------- 1081 ---------- -------N-- G-AC-GUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AA...... ........(. ..-.)..... .......... 1321 .UGCA-UUCG A-UAC-GGGC U-GGC-A-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUN-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-NU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.nondia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium nondiastaticum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium nondiastaticum. ORGANISM Streptosporangium nondiastaticum. REFERENCE 1 AUTHORS Kemmerling,C., Guertler,H., Kroppenstedt,R., Toalster,R. and Stackebrandt,E. TITLE Evidence for the phylogenetic heterogeneity of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 16, 369-372 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70426|g535103 BASE COUNT 290 a 335 c 459 g 250 t 3042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GNGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GNC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-A...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ....G----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UCUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AN-N--- ---------( ---------- ---------) ---------- 1081 ---------- -------N-- G-AC-GUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCN-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-CUCG A-UAC-GGGC U-GGC-A-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-NCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GA-G(-AUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UGGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.4 STS.PSEUDOVULGARE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.4 STS.PSEUDOVULGARE_SUBGROUP. ORGANISM 2.16.1.7.4 STS.PSEUDOVULGARE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.pvulgr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium pseudovulgare.. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium pseudovulgare. ORGANISM Streptosporangium pseudovulgare. REFERENCE 1 AUTHORS Kemmerling,C., Guertler,H., Kroppenstedt,R., Toalster,R. and Stackebrandt,E. TITLE Evidence for the phylogenetic heterogeneity of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 16, 369-372 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70428 BASE COUNT 291 a 338 c 458 g 249 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UCG-- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-A...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ...CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AN-N--- ---------( ------NGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAC |-GGCN-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-CUCG A-UAC-GGGC U-GGC-A-GA GGN-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-NCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------- CC-CGGA--- -AA-----GC 1981 -UCU-G--(- GAGA-)-CAG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UGGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.nondi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium nondiastaticum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium nondiastaticum. ORGANISM Streptosporangium nondiastaticum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89945 BASE COUNT 311 a 365 c 495 g 271 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUAC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGG---A UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UCUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GA--- ------C--- ---------( -----GAAG- ---------) ---------- 1081 ---------- -------U-- U-GA-CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UCU-G--(- GAGA-)-CAG -A-GC-C--- ---------- ---CU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGNGGG-G-A G-CN-GU-CG A-AGGU-UGG GGU-UG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.viral2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium viridialbum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium viridialbum. ORGANISM Streptosporangium viridialbum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89954 BASE COUNT 310 a 366 c 499 g 269 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGG---A UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGGA-- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --UUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-- G-C--GGCCG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.pvulg2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium pseudovulgare. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium pseudovulgare. ORGANISM Streptosporangium pseudovulgare. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89946 BASE COUNT 310 a 366 c 499 g 269 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGG---A UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- AAA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --UUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-- G-C--GGCCG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.pvulg3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium pseudovulgare. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium pseudovulgare. ORGANISM Streptosporangium pseudovulgare. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48995 BASE COUNT 303 a 357 c 490 g 262 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--G-U- ---UCC-(-- --------CG 541 AU-------- -)-GGG---A UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAC |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-CUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- AAA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UGGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.nondi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium nondiastaticum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium nondiastaticum. ORGANISM Streptosporangium nondiastaticum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48994 BASE COUNT 304 a 354 c 490 g 262 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--G-U- ---UCC-(-- --------CG 541 AU-------- -)-GGG---A UC-GU----- GU-GGAAA-- ---G------ ---------- 601 --(------- ---UCUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGC--C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-CUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- AAA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GA-G(-AUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UGGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.fragil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium fragile. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium fragile. ORGANISM Streptosporangium fragile. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89942 BASE COUNT 309 a 370 c 505 g 265 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-C--C-C- ---CCC-(-- --------GC 541 AU-------- -)-GGG---G GG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-A--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- AAA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.fragi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium fragile. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium fragile. ORGANISM Streptosporangium fragile. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48992 BASE COUNT 301 a 363 c 490 g 258 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-C--C-C- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- ---------U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-A--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- AAA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGUGGUUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C U-GGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.5 STS.ROSEUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.5 STS.ROSEUM_SUBGROUP. ORGANISM 2.16.1.7.5 STS.ROSEUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.43137 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium sp.. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium sp. ORGANISM Streptosporangium sp. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89958 BASE COUNT 315 a 359 c 497 g 276 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.brasil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium "brasiliense". ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium "brasiliense". ORGANISM Streptosporangium "brasiliense". REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89937 BASE COUNT 316 a 358 c 497 g 277 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.rubrum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium "rubrum". ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium "rubrum". ORGANISM Streptosporangium "rubrum". REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89950 BASE COUNT 318 a 358 c 494 g 276 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-A- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.album 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium album. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium album. ORGANISM Streptosporangium album. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89934 BASE COUNT 316 a 358 c 496 g 277 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.korean 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium "koreanum". ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium "koreanum". ORGANISM Streptosporangium "koreanum". REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89943 BASE COUNT 316 a 360 c 497 g 277 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.roseu4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium roseum subsp. "incarnatum" DSM 44111. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium roseum subsp. "incarnatum" DSM 44111. ORGANISM Streptosporangium roseum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89949 BASE COUNT 316 a 360 c 497 g 277 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.roseu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium roseum. ORGANISM Streptosporangium roseum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89948 BASE COUNT 316 a 360 c 497 g 277 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.vulgar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium vulgare. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium vulgare. ORGANISM Streptosporangium vulgare. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89955 BASE COUNT 316 a 359 c 497 g 278 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.roseu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium roseum. ORGANISM Streptosporangium roseum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89947 BASE COUNT 316 a 359 c 497 g 278 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.vulga2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium vulgare subsp. "antibioticum" DSM 44112. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium vulgare subsp. "antibioticum" DSM 44112. ORGANISM Streptosporangium vulgare. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89957 DSM 44112 = ATCC 21906 BASE COUNT 314 a 359 c 498 g 279 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--U-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CU-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.vulga4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium vulgare. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium vulgare. ORGANISM Streptosporangium vulgare. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48999 BASE COUNT 307 a 352 c 488 g 271 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--U-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C U-GGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.ameth2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium amethystogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium amethystogenes. ORGANISM Streptosporangium amethystogenes. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89936 BASE COUNT 314 a 359 c 498 g 278 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--U-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.amethy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium amethystogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium amethystogenes. ORGANISM Streptosporangium amethystogenes. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89935 BASE COUNT 314 a 360 c 498 g 277 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--U-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.vulga3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium vulgare. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium vulgare. ORGANISM Streptosporangium vulgare. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89956 BASE COUNT 315 a 360 c 497 g 278 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-C--U-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.longsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium longisporum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium longisporum. ORGANISM Streptosporangium longisporum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89944 BASE COUNT 319 a 357 c 495 g 279 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--U-G- ---UCG-(-- --------GC 541 AU-------- -)-CGA---U GG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAA-CAU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.longs2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium longisporum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium longisporum. ORGANISM Streptosporangium longisporum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48993 BASE COUNT 311 a 349 c 485 g 273 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--U-G- ---UCG-(-- --------GC 541 AU-------- -)-CGA---U GG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAA- 2281 UG--UUGC-C AG-CAA-CAU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGUGGUUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C U-GGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.6 STS.VIOLACEOCHROMOGENES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.6 STS.VIOLACEOCHROMOGENES_SUBGROUP. ORGANISM 2.16.1.7.6 STS.VIOLACEOCHROMOGENES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.viola2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium violaceochromogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium violaceochromogenes. ORGANISM Streptosporangium violaceochromogenes. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89952 BASE COUNT 305 a 365 c 512 g 274 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--G--AA-A -----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------ACU- --C|--G--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-C AC-G--U-C- ---CCC-(-- --------GC 541 AU-------- -)-GGG---G UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----GUGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-G- ---------C C--CGGA--- -AA----GCU 1981 -UCG-G--(- AGAC-)-GGA -G-CCCU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAU-GCC CUC------- ---------- ----(---UU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --------GG GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GGC-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGGC- ---------- ---------- -----(---- --AUCU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GC CGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.violac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium violaceochromogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium violaceochromogenes. ORGANISM Streptosporangium violaceochromogenes. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89951 BASE COUNT 304 a 364 c 512 g 276 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--G--AA-A -----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------ACU- --C|--G--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---G UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----GUGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-CG- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-G- ---------C C--CGGA--- -AA----GCU 1981 -UCG-G--(- AGAC-)-GGA -G-CCCU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC UUC------- ---------- ----(---UU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --------GG GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGCC- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GG UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.viola3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium violaceochromogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium violaceochromogenes. ORGANISM Streptosporangium violaceochromogenes. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48997 BASE COUNT 298 a 353 c 500 g 272 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---G UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-G--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-CG- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GUGGGG -GA-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GUUUUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC U--------- ---------- ---U(---CU ---UUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- --------GG GGUGGUUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGCC- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GG UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.carneu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium carneum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium carneum. ORGANISM Streptosporangium carneum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89938 BASE COUNT 313 a 362 c 499 g 276 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-G--C-U- ---UUC-(-- --------GC 541 AU-------- -)-GGA--AU CG-CG----C GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UUC-A--(- GAGA-)-UGG -A-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pms.paront 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planomonospora parontospora. ACCESSION No information KEYWORDS No information. SOURCE Planomonospora parontospora. ORGANISM Planomonospora parontospora. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85495|g2326307 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 323 a 379 c 521 g 283 t 2870 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GN-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--C-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---C UC-CG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-U UG-GGG-C(- UU-A)A-CUC -CA-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -G-GCCC--- ---------- ---UC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --UUCG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.viral3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium viridialbum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium viridialbum. ORGANISM Streptosporangium viridialbum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48998 BASE COUNT 298 a 354 c 495 g 269 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-G--C-C- ---UUG-(-- --------GC 541 AU-------- -)-CGG---G UG-CU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGG---GUGU G-AAA-GC-C CA-UGG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-UUCG A-UAC-GGGC U-GGCUA-GA GGC-----UG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UC---- CU-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUU -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAG-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGGA-- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(---UU ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.viralb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium viridialbum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium viridialbum. ORGANISM Streptosporangium viridialbum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89953 BASE COUNT 308 a 360 c 503 g 276 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-G--C-C- ---UUG-(-- --------GC 541 AU-------- -)-CGG---G UG-CU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CA-UGG-C(- UU-A)A-CUG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGGA-- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(----U ---UUG--)- 2341 ---------- ---------- ---------- --------GG GUG------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.cinnab 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium "cinnabarium". ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium "cinnabarium". ORGANISM Streptosporangium "cinnabarium". REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89939 BASE COUNT 308 a 362 c 504 g 274 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--CGU- ---GUG-(-- --------UC 541 AU-------- -)-CGC---- GC-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CA-UGG-C(- UU-A)A-CUG -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGG -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pbs.longsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planobispora longispora. ACCESSION No information KEYWORDS No information. SOURCE Planobispora longispora. ORGANISM Planobispora longispora. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85494|g2281011 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 332 a 376 c 511 g 276 t 2881 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC--- (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUC---A -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CA-C--C-G- ---GUG-(-- --------GC 541 AU-------- -)-CGC---C UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AA-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C UG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- KK-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GGU -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|-A- ---------C ---CCGG--- -AA----ACC 1981 -UCU-A--(- GAGA-)-URG -A-GGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAA-ACA C--------- ---------- ----(----Y ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUU|G 2701 GGGA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- CA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACC~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.7 MTT.SALMONEA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.7 MTT.SALMONEA_SUBGROUP. ORGANISM 2.16.1.7.7 MTT.SALMONEA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.spiral 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora spiralis. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora spiralis. ORGANISM Microtetraspora spiralis. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48983|g2251228 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 300 a 355 c 500 g 254 t 2967 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--C--- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(G-A A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-G--- CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------GG- C-GAAAGGC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAU)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-CCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GG -GUUCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -AA----GCU 1981 -CUG-G--(- AGAC-)-AGA -G-CCC---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.helvat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora helvata. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora helvata. ORGANISM Microtetraspora helvata. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48975|g2251221 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 298 a 353 c 500 g 260 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CG-C--C-C- ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-G--C GC-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGC-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UCUCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -AA----GCU 1981 -CCA-G--(- AGAU-)-GGG -G-CCC---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.pusill 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora pusilla. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora pusilla. ORGANISM Microtetraspora pusilla. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48978|g2251224 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 306 a 352 c 493 g 263 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-C- ---CAG-(-- --------GC 541 AU-------- -)-CUG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---AACUU-- ---)------ ---------| --------U- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U UA-GGG-C(- UU-A)A-CCC -UA-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-CA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAC -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -AA----GCU 1981 -CUG-G--(- AGAC-)-AGA -G-CCC---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CACGCUC C--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.angios 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora angiospora. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora angiospora. ORGANISM Microtetraspora angiospora. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48843 BASE COUNT 300 a 352 c 500 g 259 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -ACGGUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--C--- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUAGC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GG-G-A-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-G--C CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -AA----GCC 1981 -CUG-G--(- AGAC-)-AGA -G-CCC---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-AGGG-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora salmonea. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora salmonea. ORGANISM Microtetraspora salmonea. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97892|g1666652 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 310 a 367 c 504 g 268 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--CU-- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GA) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -CUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -CA----GCU 1981 -GCA-G--(- AGAU-)-GUG -G-CCU---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAA-CAC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGUGGUUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.salmo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora salmonea. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora salmonea. ORGANISM Microtetraspora salmonea. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48982|g2251227 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 299 a 355 c 498 g 261 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--U--- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-G--C CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UUCCG-UGC 1741 CG--GA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGC--- -AA----GCU 1981 -CUG-G--(- AGAG-)-AGU -G-CCU---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAA-CAC C--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGUGGUUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.plychr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora polychroma. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora polychroma. ORGANISM Microtetraspora polychroma. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48977|g2251223 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 297 a 353 c 499 g 264 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GGGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CG-U--U--- ---UCG-(-- --------GC 541 AU-------- -)-CGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-G CC-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-CA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -UUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UCUCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -CA----CU- 1981 -CCC-A--(- GAGA-)-UGG -G-GGCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CACGCCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.fastid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora fastidiosa. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora fastidiosa. ORGANISM Microtetraspora fastidiosa. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48844 BASE COUNT 298 a 350 c 494 g 270 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UC-C--G--- ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUUU ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-- -G-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC C-GGCUA-GA GGU-----AG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UCUCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--A 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -CC----GG- 1981 -UCU-A--(- GAGA-)-UAG -A-UCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGG------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAA-CCU C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GAGGGUUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.africa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora africana. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora africana. ORGANISM Microtetraspora africana. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48842 BASE COUNT 298 a 356 c 498 g 261 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--C--- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UCUCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.roseol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora roseola. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora roseola. ORGANISM Microtetraspora roseola. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48980|g2251226 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 298 a 355 c 498 g 263 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--C-C- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) GC-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-GC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GUC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCAU G-AAA-GC-U -G-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAG-GGC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -CGUGCUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUCCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.rectic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora recticatena. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora recticatena. ORGANISM Microtetraspora recticatena. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48979|g2251225 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 297 a 356 c 497 g 263 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GGGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--C--- ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAG A)--CC-UGC GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U CG-CAG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC U-GGCUA-GA GGU-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- --------GA -UUCCG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CCA- 2281 UG--UUGC-C AG-CAGGGCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -CGUGCUG|G 2701 G-GA-CU-C- A-UGG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.8 STS.CORRUGATUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.8 STS.CORRUGATUM_SUBGROUP. ORGANISM 2.16.1.7.8 STS.CORRUGATUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.corrug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium corrugatum.. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium corrugatum. ORGANISM Streptosporangium corrugatum. REFERENCE 1 AUTHORS Kemmerling,C., Guertler,H., Kroppenstedt,R., Toalster,R. and Stackebrandt,E. TITLE Evidence for the phylogenetic heterogeneity of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 16, 369-372 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70427|g535013 BASE COUNT 288 a 333 c 462 g 258 t 3035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A.. ..-....... .......(-- ------.... 541 ......---- -)........ .......... GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-A...... .........( .......... ......---) .......... 1081 .......... .......... U-AC-GUGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GCAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUU -UCCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---CGGA--- -AA-----CG 1981 -UGC-A--(- GAGA-)-UGU -G-CG-CC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.corru3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium corrugatum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium corrugatum. ORGANISM Streptosporangium corrugatum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48991 BASE COUNT 300 a 353 c 495 g 269 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-C--G-U- ---UCC-(-- --------CG 541 AU-------- -)-GGG--AU GC-GU----- GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( -----UGAC- ---------) ---------- 1081 ---------- -------G-- U--A-CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GCAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-AC---- CU-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUU -UCCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---C-GG--- AAA-----CG 1981 -UGC-A--(- GAGA-)-UGU -G-CGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.corru2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium corrugatum. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium corrugatum. ORGANISM Streptosporangium corrugatum. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89941 BASE COUNT 308 a 360 c 505 g 276 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--C-G- ---AUG-(-- --------GC 541 AU-------- -)-CGU---C UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUG -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-AC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUU -UCCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---C-GG--- AAA-----CG 1981 -UGC-A--(- GAGA-)-UGU -G-CGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCU CC-------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sts.clavif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptosporangium claviforme. ACCESSION No information KEYWORDS No information. SOURCE Streptosporangium claviforme. ORGANISM Streptosporangium claviforme. REFERENCE 1 AUTHORS Ward-Rainey,N., Rainey,F.A. and Stackebrandt,E. TITLE The phylogenetic structure of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 19, 50-55 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89940 BASE COUNT 315 a 357 c 497 g 275 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--C-G- ---AUG-(-- --------GC 541 AU-------- -)-CGU---C UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CA-UGG-C(- UU-A)A-CUA -UG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-AC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUU -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UC|AC- ---------C ---C-GG--- AAA-----CG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAG-CGC C--------- ---------- ----(----U ---UCG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGUGGCUG|G 2701 G-GA-CU-C- A-UGG-NA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CUC--- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.9 MTT.GLAUCA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.9 MTT.GLAUCA_SUBGROUP. ORGANISM 2.16.1.7.9 MTT.GLAUCA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.fusca1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora fusca. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora fusca. ORGANISM Microtetraspora fusca. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48973|g2251219 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 301 a 344 c 492 g 276 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--U-U- ---CG--(-- --------GC 541 AU-------- -)-CCG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U UA-GGG-C(- UU-A)A-CCC -UA-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCC 1981 -UCA----(- GAGA-)--UG -G-GGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.nivalb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora niveoalba. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora niveoalba. ORGANISM Microtetraspora niveoalba. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48976|g2251222 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 301 a 346 c 495 g 274 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--U-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U UA-GGG-C(- UU-A)A-CCC -UA-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------G|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUC AGA-UA|CA- ---------C ---CGGA--- -AA-----CC 1981 -UUC-A--(- GAGA-)-UGG -A-GGCCU-- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CGACGCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.glauc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora glauca. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora glauca. ORGANISM Microtetraspora glauca. REFERENCE 1 AUTHORS Wang,Y. TITLE Phylogenetic analysis of Microtetraspora species JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46 (3), 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48974|g2251220 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 304 a 345 c 493 g 274 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U UA-GGG-C(- UU-A)A-CCC -UA-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAG -ACCCG-UGC 1741 CG--CUA--- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCU 1981 -UCA----(- GAGA-)--UG -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mtt.glauca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microtetraspora glauca. ACCESSION No information KEYWORDS No information. SOURCE Microtetraspora glauca. ORGANISM Microtetraspora glauca. REFERENCE 1 AUTHORS Rainey,F.A., Ward-Rainey,N., Kroppenstedt,R.M. and Stackebrandt,E. TITLE The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1088-1092 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97891|g1666645 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 312 a 354 c 500 g 283 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--U-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-U UA-GGG-C(- UU-A)A-CCC -UA-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCU 1981 -UCA----(- GAGA-)--UG -G-AGCCC-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC C--------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C C-GGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.7.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.7.10 MICROBISPORA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.7.10 MICROBISPORA_SUBGROUP. ORGANISM 2.16.1.7.10 MICROBISPORA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.parva 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora parva. ACCESSION No information KEYWORDS No information. SOURCE Microbispora parva. ORGANISM Microbispora parva. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48985 BASE COUNT 300 a 344 c 495 g 275 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----G-C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-U--CCU- ---CCG-(-- --------CA 541 UG-------- -)-GUG---U GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----UUGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UU-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UC---- -U-------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|GGCCU- G-GGGAGUAC 1801 GGC-----(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-CGG -G-UGCCU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.thdia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora thermodiastatica. ACCESSION No information KEYWORDS No information. SOURCE Microbispora thermodiastatica. ORGANISM Microbispora thermodiastatica. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48986 BASE COUNT 298 a 342 c 497 g 280 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----G-C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--UGG- ---CCG-(-- --------CA 541 UG-------- -)-GUC---U GU-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----UUGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UU-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- -G-------- -------GUU -C-CUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -CCC-A--(- GAGA-)-UGG -G-UGCC--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(----G ---UUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -UUUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.aerat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora aerata. ACCESSION No information KEYWORDS No information. SOURCE Microbispora aerata. ORGANISM Microbispora aerata. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48984 BASE COUNT 299 a 345 c 495 g 276 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-A--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA-----CG 1981 -CCC-A--(- GAGA-)-UGG -G-UGCCU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ---C(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --UUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.thros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora thermorosea. ACCESSION No information KEYWORDS No information. SOURCE Microbispora thermorosea. ORGANISM Microbispora thermorosea. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48987 BASE COUNT 300 a 343 c 493 g 278 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-A--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CG--C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGUCUU- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ---C(---GU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- --CGUUU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.ameth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora amethystogenes. ACCESSION No information KEYWORDS No information. SOURCE Microbispora amethystogenes. ORGANISM Microbispora amethystogenes. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48988 BASE COUNT 302 a 342 c 492 g 277 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--UUU- ---CUC-(-- --------GC 541 AU-------- -)-GUG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G GAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 --A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AGCCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA-----CA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCCU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-UCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.chrom 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora chromogenes. ACCESSION No information KEYWORDS No information. SOURCE Microbispora chromogenes. ORGANISM Microbispora chromogenes. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48989 BASE COUNT 300 a 346 c 495 g 273 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---ACC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-G---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbsp.diast 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbispora diastatica. ACCESSION No information KEYWORDS No information. SOURCE Microbispora diastatica. ORGANISM Microbispora diastatica. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE Phylogenetic analysis reveals new relationships among members of the genera Microtetraspora and Microbispora JOURNAL Int. J. Syst. Bacteriol. 46, 658-663 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U48990 BASE COUNT 302 a 343 c 492 g 276 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GGA---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UU-GCG|U CUG---CCGU G-AAA-GC-C CG-UGG-C(- UU-A)A-CUA -CG-G-GUC- 1321 -UGCG-GUGG A-UAC-GGGC A-GGCUA-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UCC-AC)- ---------- ---------- ---------- -------GAU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGCAA-C G)--UGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UA|CA- ---------C ---CGGA--- -AA----GCU 1981 -CUG----(- GAGA-)--CA -G-AGCCC-- ---------- ---UC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| ACU-GGUGUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCA--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bispor.A 4376 bp RNA RNA 30-JUN-1997 DEFINITION Microbispora bispora.; . ACCESSION U83909 KEYWORDS . SOURCE Microbispora bispora. ORGANISM Microbispora bispora. REFERENCE 1 (bases 1 to 5153) AUTHORS Wang,Y., Zhang,Z. and Ramanan,N. TITLE types of transcriptionally active 16S rRNA genes The actinomycete Thermobispora bispora contains two distinct JOURNAL J. Bacteriol. 179 (10), 3270-3276 (1997) STANDARD No information REFERENCE 2 (bases 1 to 5153) AUTHORS Wang,Y. TITLE Heterogeneity of rRNA genes in T. bispora JOURNAL Thesis (1997) Institute of Molecular and Cell Biology, National University of Singapore STANDARD No information REFERENCE 3 (bases 1 to 5153) AUTHORS Wang,Y. TITLE Direct Submission JOURNAL Submitted (07-JAN-1997) Institute of Molecular and Cell Biology, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U83909 BASE COUNT 323 a 414 c 543 g 272 t 2824 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~GGAA CCUCGACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-GA-C -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----G-CACC (--UU----- ---------- ---------- 241 --------CG -)GGUGUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-CC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -GCAC-C-GG 421 -GAU-Ag-cc c--------- ------CG-- G(-GAAA-)C -UGGGAU--- UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---Gg----- ------uucc 601 cc(------- ---cuugu-- ---)gggguu ---------| -----c--c- g--gcc---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-GC-C CA-CGG-C(- UUcA)A-CCG -UG-G-AAU- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GGG-----CG G-CA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCC--GU-CC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UUU-GU)- ---------- ---------- ---------- -------GAU -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAC UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GG-CUU GAC-AU|-G- ---------C ---UGGG--- -AA----AUC 1981 -CCGCA--(- GAGA-)-UGC -G-GGGU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------U- C-)------- GG-------- ---------| GCGUCCAGCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CC--CUA- 2281 UG--UUGC-C AG-CGG-GUU ---------- ---------- ----(----- --------)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --AUGCCG|G 2701 G-CA-CU-C- A-UGG-GG-A A-CU-GCCCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U C-ccc-aAAG -CC-G-GUC- CCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCC-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- ---Cc(---- -uuuuuu--- 3181 ---------- ---------- ---------- -------)gg ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|Uaa~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bispor.C 4376 bp RNA RNA 30-JUN-1997 DEFINITION Microbispora bispora.; . ACCESSION U83911 KEYWORDS . SOURCE Microbispora bispora. ORGANISM Microbispora bispora. REFERENCE 1 (bases 1 to 5487) AUTHORS Wang,Y., Zhang,Z. and Ramanan,N. TITLE The actinomycete Thermobispora bispora contains two distinct types of transcriptionally active 16S rRNA genes JOURNAL J. Bacteriol. 179 (10), 3270-3276 (1997) STANDARD No information REFERENCE 2 (bases 1 to 5487) AUTHORS Wang,Y. TITLE Heterogeneity of rRNA genes in T. bispora JOURNAL Thesis (1997) Institute of Molecular and Cell Biology, National University of Singapore STANDARD No information REFERENCE 3 (bases 1 to 5487) AUTHORS Wang,Y. TITLE Direct Submission JOURNAL Submitted (07-JAN-1997) Institute of Molecular and Cell Biology, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U83911 BASE COUNT 323 a 414 c 542 g 273 t 2824 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~GGAA CCUCGACUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-GA-C -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----G-CACC (--UU----- ---------- ---------- 241 --------CG -)GGUGUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-CC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCCU---G -GCAC-C-GG 421 -GAU-Ag-cc c--------- ------CG-- G(-GAAA-)C -UGGGAU--- UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----G GU-GGAAA-- ---Gg----- ------uucc 601 cc(------- ---cuugu-- ---)gggguu ---------| -----c--c- g--gcc---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAGUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-GC-C CA-CGG-C(- UUcA)A-CCG -UG-G-AAU- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GGG-----CG G-CA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-GGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 GCC--GU-CC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(UUU-GU)- ---------- ---------- ---------- -------GAU -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAC UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-G--CUU GAC-AU|-G- ---------C ---UGGG--- -AA----AUC 1981 -CCGCA--(- GAGA-)-UGC -G-GGGU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------U- C-)------- GG-------- ---------| GCGUCCAGCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CC-A |-CC--CUA- 2281 UG--UUGC-C AG-CGG-GUU ---------- ---------- ----(----- --------)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --AUGCCG|G 2701 G-CA-CU-C- A-UGG-GG-A A-CU-GCCCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U C-ccc-aAAG -CC-G-GUC- CCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCC-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- ---Cc(---- -uuuuuu--- 3181 ---------- ---------- ---------- -------)gg ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|Uaag~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bispor.D 4376 bp RNA RNA 30-JUN-1997 DEFINITION Microbispora bispora.; . ACCESSION U83912 KEYWORDS . SOURCE Microbispora bispora. ORGANISM Microbispora bispora. REFERENCE 1 (bases 1 to 5386) AUTHORS Wang,Y., Zhang,Z. and Ramanan,N. TITLE types of transcriptionally active 16S rRNA genes The actinomycete Thermobispora bispora contains two distinct JOURNAL J. Bacteriol. 179 (10), 3270-3276 (1997) STANDARD No information REFERENCE 2 (bases 1 to 5386) AUTHORS Wang,Y. TITLE Heterogeneity of rRNA genes in T. bispora JOURNAL Thesis (1997) Institute of Molecular and Cell Biology, National University of Singapore STANDARD No information REFERENCE 3 (bases 1 to 5386) AUTHORS Wang,Y. TITLE Direct Submission JOURNAL Submitted (07-JAN-1997) Institute of Molecular and Cell Biology, National University of Singapore, 10 Kent Ridge Crescent, Singapore 119260, Singapore STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U83912 BASE COUNT 312 a 400 c 551 g 289 t 2824 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~guu uaucg-gUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-GA-C -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----G-CACu (-cuu----- ---------- ---------- 241 -------uuG -)GGUGUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AG|-CC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -GCUC-U-GG 421 -GAU-Ag-cc c--------- ------UG-- G(-GAAA-)C -CGGGAU--- UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CG-C--U-G- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- UG-GU----G GU-GGAAA-- ---Gg----- ------uucc 601 cc(------- ---cuugu-- ---)gggguu ---------| -----c--c- g--gcc---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA GCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- -----CGUGU A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUCA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-CC-GCG|U CUG---CCGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GUC- 1321 -UGCG-GCGG A-UAC-GGGC G-GGCUU-GA GGC-----UG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--AG-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------G|G -GU-GU-GGG -GG-CUU--- ---------- 1681 -(UCA-CC)- ---------- ---------- ---------- -------GGU -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-UGC -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-G--UUU GAC-AU|-G- ---------C ---CGGG--- -AA----AU- 1981 -CCGCA--(- GAGA-)-UGC -G-GGGU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------U- C-)------- GG-------- ---------| GCGCCUGGCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CC-A |-UC--CUG- 2281 UG--UUGC-C AG-CAC-GCC ---------- ---------- --CC(---UU --GUGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -UU--GGGC- 2821 U-GCA-AA-C AUG--CUACA AUGGU-C-GG -UA--CAACG GGU-C-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- GA-GCCAA-U CCUUAGAAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCC-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA--cc--- ---------- ---------- -----(---- ccuug----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GUC-GG-UG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|Uaag~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8 STREPTOMYCES_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8 STREPTOMYCES_AND_RELATIVES. ORGANISM 2.16.1.8 STREPTOMYCES_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.1 STM.SCABIES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.1 STM.SCABIES_SUBGROUP. ORGANISM 2.16.1.8.1 STM.SCABIES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.acidsc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces acidiscabies. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces acidiscabies. ORGANISM Streptomyces acidiscabies. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63865|g971130 BASE COUNT 344 a 386 c 516 g 284 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUC---- ---------- -------A-C UC-C--U-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- CG-GG----G GU-CGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGACG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAAG AGC-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sp5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sp. str. 91-Sy-13. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sp. str. 91-Sy-13. ORGANISM Streptomyces sp. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S ribosomal RNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63866|g971131 isolate_name= 91-Sy-13 BASE COUNT 344 a 382 c 514 g 290 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-C CU-U--C-C- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GG-UG----G GU-UCAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUACG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.neygaw 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces neyagawaensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces neyagawaensis. ORGANISM Streptomyces neyagawaensis. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63869|g971134 BASE COUNT 345 a 384 c 517 g 285 t 2845 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-G--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---- AUGUG----C GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----ACA 1981 -CCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.diast2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces diastatochromogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces diastatochromogenes. ORGANISM Streptomyces diastatochromogenes. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63867|g971132 BASE COUNT 348 a 382 c 514 g 287 t 2845 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CA-C--U-A- ---GGG-(-- --------GC 541 AU-------- -)-CUCU--- UG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.scabie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces scabies. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces scabies. ORGANISM Streptomyces scabies. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63862|g971124 BASE COUNT 350 a 381 c 513 g 286 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-U--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---- AUGAG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.scabi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces scabies str. SNS-26. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces scabies str. SNS-26. ORGANISM Streptomyces scabies. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63864|g971129 isolate_name= SNS-26 BASE COUNT 350 a 382 c 513 g 285 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-U--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---- AUGAG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.scabi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces scabies. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces scabies. ORGANISM Streptomyces scabies. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63863|g971128 BASE COUNT 350 a 382 c 513 g 285 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-U--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---- AUGAG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.bottre 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces bottropensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces bottropensis. ORGANISM Streptomyces bottropensis. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63868|g971133 BASE COUNT 348 a 383 c 513 g 287 t 2845 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C AC-U--C-U- ---CGG-(-- --------GC 541 AU-------- -)-CCG---- AUGAG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|-G- ---------C ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.galbus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces galbus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces galbus. ORGANISM Streptomyces galbus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79325|g488844 BASE COUNT 347 a 373 c 505 g 292 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--C-U- ---UGG-(-- --------GC 541 AU-------- -)-CCU---- UG-AU----G GU-GUAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-AG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.lincln 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces lincolnensis.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces lincolnensis. ORGANISM Streptomyces lincolnensis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79854|g509055 BASE COUNT 345 a 380 c 509 g 285 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACC---- ---------- -------A-C CA-C--C-A- ---UGG-(-- --------GC 541 AU-------- -)-CUG---- UG-GU----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAA-CUC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GAGGUUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.hyscop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces hygroscopicus.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces hygroscopicus. ORGANISM Streptomyces hygroscopicus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79853|g509121 BASE COUNT 346 a 378 c 507 g 286 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACC---- ---------- -------A-C UC-U--C-G- ---CAG-(-- --------GC 541 AU-------- -)-CUG---- UG-AG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CCU-G--(- GAGA-)-CAG -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-AG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.galbu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces galbus.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces galbus. ORGANISM Streptomyces galbus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79852|g509208 BASE COUNT 345 a 378 c 508 g 286 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUC---- ---------- -------A-C UC-U--U-G- ---CAG-(-- --------GC 541 AU-------- -)-CUG---- UG-AG----G GU-CGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-AG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.lutver 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces luteoverticillatus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces luteoverticillatus. ORGANISM Streptomyces luteoverticillatus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53172 Former RDP Sids: Stv.luteor DPDU 0081 = ATCC 27446 = ISP 5509 NB: former name Streptoverticillium luteoreticuli BASE COUNT 271 a 281 c 395 g 228 t 3201 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UA-C--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GUAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-N 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU AAA--CCNN| UUUC-NG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCNGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......CG|U CGG---UUGU G-AAA-GC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGNA GAU-C|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UNG-GU-NUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAUG AGC-U-G-C- GA-AAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUN-CGGUN- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.mobara 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces mobaraensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces mobaraensis. ORGANISM Streptomyces mobaraensis. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for olionucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53167 Former RDP Sids: Stv.ladaka DSM 40587 (T) = CBS 777.72 = IFO 13476 = ATCC 27441 = ISP 5587 NB: former name Streptoverticillium ladakanum subsp. ladakanum BASE COUNT 265 a 290 c 398 g 229 t 3194 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUC---C -ACUC-C-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUC---- ---------- -------A-C UU-C----A- ---CCC-(-- --------UC 541 CU-------- -)-GGG---- UG-GG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-NG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......CG|U CGG---AUGU G-AAA-GC-C NN-NGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -GCU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--CUA- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ---U(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K1.. ACCESSION No information KEYWORDS No information. SOURCE clone K1. ORGANISM clone K1. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91516|g987791 BASE COUNT 76 a 77 c 123 g 68 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-AG-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CM---- -----(KAA- ---C)G-CA- UUAA-GUUCC C|-|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.purpur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces purpureus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces purpureus. ORGANISM Streptomyces purpureus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53170 NB: DSM 43360 ? which = ATCC 21405; NRRL B-5737 DSM 43362 is the type strain though BASE COUNT 270 a 288 c 402 g 225 t 3191 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-G--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGG---- GG-CU----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUN---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 .....ACG|U CGG---AUGU G-AAA-GC-C NN-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -GCU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UAG-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.phosal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces phosalacineus str. KA-338 DSM 43860. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces phosalacineus str. KA-338 DSM 43860. ORGANISM Streptomyces phosalacineus. REFERENCE 1 AUTHORS Warwick,S., Stackebrandt,E., Kroppenstedt,R. and Embley,M.T . TITLE The phylogeny of Kitasatosporia: Unification of Kitasatosporia and Streptomyces in an emmended genus Streptomyces JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43860 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55223 Former RDP Sids: Kit.phosal DSM 43860 = JCM 2574 = IFO 14372 = JCM 3340 isolate_name= KA-338 NB: former name Kitasatosporia phosalacinea BASE COUNT 326 a 359 c 484 g 265 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UUCACGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC--C (--UU----- ---------- ---------- 241 --------CG -)GG-GNNG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- GAA--UCU-G C-CCUU---A -ACUC-U-GG 421 -GAC-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-U--Y-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- GG-UC----G GU-NGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----CAGG-- AUG---A-|U CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UNUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUN-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-N-NNC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUN-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- C-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----ACG 1981 -UCU-A--(- GAGA-)-UAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- CG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUG- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC--(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAGU-NGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACNGGNC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -UA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGAG-G-A G-CC-GU-UG A-AGGU-GGG ACC-AG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.grislo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces griseolosporeus str. AM-9660 DSM 43859. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces griseolosporeus str. AM-9660 DSM 43859. ORGANISM Streptomyces griseolosporeus. REFERENCE 1 AUTHORS Warwick,S., Stackebrandt,E., Kroppenstedt,R. and Embley,M.T . TITLE The phylogeny of Kitasatosporia: Unification of Kitasatosporia and Streptomyces in an emmended genus Streptomyces JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43859 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55221 Former RDP Sids: Kit.griseo DSM 43859 = IFO 14371 = JCM 3339 isolate_name= AM-9660 NB: former name Kitasatosporia griseola BASE COUNT 330 a 356 c 480 g 261 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UUCACGG AGAGUN(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC--C (--UU----- ---------- ---------- 241 --------CG -)GG-GUNG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- AAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-N--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- AG-CG----G GU-NGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|U CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-N-NNC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUN-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UNAA-GUUCC C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -NGU-A--(- GAGA-)-UAG -C-AGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- CG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--CUG- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAGU-NGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-YC UUGUA----C 3061 ACACYGGNC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGAG-G-A G-CC-GU-NG A-AGGU-GGG ACC-AG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.setae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces setae. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces setae. ORGANISM Streptomyces setae. REFERENCE 1 AUTHORS Warwick,S., Stackebrandt,E., Kroppenstedt,R. and Embley,M.T. TITLE The phylogeny of Kitasatosporia: Unification of Kitasatosporia and Streptomyces in an emmended genus Streptomyces JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55220 Former RDP Sids: Kit.setae DSM 43861 = IFO 14216 (T) = JCM 3304 = ATCC 33774 NB: former name Kitasatosporia setae BASE COUNT 330 a 359 c 491 g 262 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..AUUCACGG AGAGUN(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC--C (--UU----- ---------- ---------- 241 --------CG -)GG-GUNG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- GAA--UCU-G C-CCUN---A -ACUC-U-GG 421 -GAC-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- GG-GU----G GU-NGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----CAGG-- AUG---A-|U CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUN-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUN-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UNG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -GGU-A--(- GAGA-)-UAU -C-AGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- CG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UN--NUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ---U(---NU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CURRU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC--(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-NG -GAGU-NGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACUGG-C- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGAG-G-A G-CC-GU-CG A-AGGU-GGG ACC-AG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.subrut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces subrutilus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces subrutilus. ORGANISM Streptomyces subrutilus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80825|g587558 BASE COUNT 348 a 375 c 506 g 287 t 2860 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACC---- ---------- -------A-C UC-C--U-G- ---UCU-(-- --------GC 541 AU-------- -)-GGG---- CA-GG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.lavend 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces lavendulae subsp. lavendulae DSM 2014 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces lavendulae subsp. lavendulae DSM 2014 (T). ORGANISM Streptomyces lavendulae. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53173 DSM 2014 (T) = ATCC 8664 = ISP 5069 BASE COUNT 266 a 291 c 400 g 226 t 3193 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACC---- ---------- -------A-C UC-C--U-CG ---CCC-(-- --------GC 541 AU-------- -)-GGG---C GG-GG----G UU--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--N- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -G........ .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .CG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-ACAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GCU ---------- ---------- ----(---UC ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-A.. 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.griseu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces griseus subsp. griseus KCTC 9080 [gene=rrnE gene]. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces griseus subsp. griseus KCTC 9080 [gene=rrnE gene]. ORGANISM Streptomyces griseus. REFERENCE 1 AUTHORS .-H. Kim,E., Kim,H., Hong,S.-P., Kang,K.H., Kho,Y.H. and Park,Y TITLE gene cluster from Streptomyces griseus subsp. griseus Gene organization and primary structure of a ribosomal RNA JOURNAL Gene 132, 21-31 (1993) STANDARD No information REFERENCE 2 AUTHORS Kim,E., Kim,H., Kang,K.H., Kho,Y.H. and Park,Y.H. TITLE Complete nucleotide sequence of a 16S ribosomal RNA gene from Streptomyces griseus subsp. griseus JOURNAL Nucleic Acids Res. 19, 1149-1149 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61478 legacy_attribute= sequence contained in M76388 is an exact duplicate of X61478 operon= rrnE gene BASE COUNT 346 a 379 c 511 g 292 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG----G GU-UAAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC--(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.ornatu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces ornatus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces ornatus. ORGANISM Streptomyces ornatus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79326|g488846 BASE COUNT 345 a 374 c 510 g 288 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG---GG GU-UAAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAAUGCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(--U-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGG-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.setoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces setonii. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces setonii. ORGANISM Streptomyces setonii. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63872|g971126 BASE COUNT 347 a 382 c 511 g 292 t 2844 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGCCGC (--UU----- ---------- ---------- 241 --------CG -)GUGGUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG----G GU-UAAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sp773 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sp. str. GP 773. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sp. str. GP 773. ORGANISM Streptomyces sp. REFERENCE 1 AUTHORS Manfio,G.P., Zakrzewska-Czerwinska,J. and Goodfellow,M. JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Manfio,G.P. TITLE Towards minimal standards for the description of Streptomyces species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22973|g733431 isolate_name= GP 773; isolate E. Atalan A81319 BASE COUNT 334 a 364 c 506 g 277 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUUUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGG-C AG-CAU-GCC C--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G GUU-GGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sp770 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sp. str. GP 770. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sp. str. GP 770. ORGANISM Streptomyces sp. REFERENCE 1 AUTHORS Manfio,G.P., Zakrzewska-Czerwinska,J. and Goodfellow,M. JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Manfio,G.P. TITLE Towards minimal standards for the description of Streptomyces species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22974|g733432 isolate_name= GP 770; isolate E. Atalan A46R51 BASE COUNT 334 a 368 c 502 g 275 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GNG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUG-----UN G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGG-C AG-CAU-GCC C--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGCC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG ACC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sp772 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sp. str. GP 772. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sp. str. GP 772. ORGANISM Streptomyces sp. REFERENCE 1 AUTHORS Manfio,G.P., Zakrzewska-Czerwinska,J. and Goodfellow,M. JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Manfio,G.P. TITLE Towards minimal standards for the description of Streptomyces species JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22972|g733430 isolate_name= GP 772; isolate E. Atalan A46R47 BASE COUNT 335 a 367 c 503 g 276 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UC-U--G-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AC-GG----G GU-UGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-AUGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-AUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGG-C AG-CAU-GCC C--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGCC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.2 STM.CINNAMONEUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.2 STM.CINNAMONEUS_SUBGROUP. ORGANISM 2.16.1.8.2 STM.CINNAMONEUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.bikini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces bikiniensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces bikiniensis. ORGANISM Streptomyces bikiniensis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79851|g509104 BASE COUNT 342 a 383 c 512 g 280 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-G--G-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-CG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UCCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-UGC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE10 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T., Suga,Y. and Matsuguchi,T. TITLE Molecular phylogenetic analysis of a soil microbial community in a soybean field JOURNAL Eur. J. Soil Sci. 46, 415-421 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26262|g498380 library_source= unidentified soil bacterium from soybean field BASE COUNT 61 a 69 c 86 g 63 t 4097 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CGC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CC-C- U-GCG-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U UUCAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.cincin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces cinnamoneus subsp. cinnamoneus DPDU 0093 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces cinnamoneus subsp. cinnamoneus DPDU 0093 (T). ORGANISM Streptomyces cinnamoneus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53171 Former RDP Sids: Stv.cinn93 DPDU 0093 (T) = ISP 5005 NB: former name Streptoverticillium cinnamoneum subsp. cinnamoneum BASE COUNT 276 a 300 c 414 g 224 t 3162 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C-C- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GG-CG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGN- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... ..AAA-GC-N NN-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCNG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU.... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G......... .......... .A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GNGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.olivor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces olivoreticuli subsp. cellulophilus DPDU 0278 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces olivoreticuli subsp. cellulophilus DPDU 0278 (T). ORGANISM Streptomyces olivoreticuli. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53166 Former RDP Sids: Stv.olivor NB: former name Streptoverticillium olivoreticuli subsp. cellulophilum BASE COUNT 268 a 293 c 415 g 233 t 3167 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C-C- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- GG-CG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .AAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-N NN-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CNCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.cinaza 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces cinnamoneus subsp. azacolutus DPDU 0074 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces cinnamoneus subsp. azacolutus DPDU 0074 (T). ORGANISM Streptomyces cinnamoneus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53165 Former RDP Sids: Stv.cinn74 NB: former name Streptoverticillium cinnamoneum subsp. azacolutum BASE COUNT 259 a 285 c 404 g 227 t 3201 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GC-A- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C-C- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GG-UG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(- -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCG- CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGN- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-A---GAAG ---------C 1141 -GCCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .CG-UAG-GC -G|-GC-UU- 1261 G-UN-N-G|U CGG---AUGU G-AAA-GC-C NG-GGG-C(- CU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAA-)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)--CU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 CCG-C---(A AGG)---C.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)..CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG A-A-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -G-)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G......... .......... ...AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GU-- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G C......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.baldac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces baldaccii. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces baldaccii. ORGANISM Streptomyces baldaccii. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53164 Former RDP Sids: Stv.baldac NB: ATCC says that IPV 174 is type strain and that IPV 174 doesn't belong with DPDU 0819 (T) former name Streptoverticillium baldacii BASE COUNT 260 a 276 c 387 g 221 t 3232 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C-C- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GG-UG----G GU-GGAAA.. .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|....CC U--AUCA-G- CUN-N---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGN ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......CG|U CGG---AUGU G-AAA-GC-N NN-NGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCN- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUN- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-NGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.3 STM.SALMONIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.3 STM.SALMONIS_SUBGROUP. ORGANISM 2.16.1.8.3 STM.SALMONIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces salmonis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces salmonis. ORGANISM Streptomyces salmonis. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53169 Former RDP Sids: Stv.salmon NB: former name Streptoverticillium salmonis BASE COUNT 256 a 273 c 380 g 222 t 3245 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CG-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-AU----G GU-GUAAA-- ---....... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 GG-NG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 N-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .CG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C UG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-UGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)..CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UNG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-C..... .......... 2761 .......... .......... .A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.abikon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces abikoensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces abikoensis. ORGANISM Streptomyces abikoensis. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53168 Former RDP Sids: Stv.abikon DSM 40831 (T) = RIA 497 = NRRL B-1518 = CBS 487.62 = ATCC 12766 NB: former name Streptoverticillium abikoense BASE COUNT 264 a 279 c 396 g 222 t 3215 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CG-C--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---....... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... .GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- NGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU AAA--CCUC| UUUC-NG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A A........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......CG|U CGG---AUGU G-AAA-GC-C NN-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCU-A--(- GAGA-)-UGG -U-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-NUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GN)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUN- 2281 UG--UUGC-C AG-CAU-GC- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --GUNAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUN- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.orien2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis orientalis subsp. lurida DSM 43187. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis orientalis subsp. lurida DSM 43187. ORGANISM Amycolatopsis orientalis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81573|g550303 DSM 43187 = NCIMB 9378 BASE COUNT 341 a 382 c 511 g 281 t 2861 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---C UC-CG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GC--- CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.rimosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces rimosus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces rimosus. ORGANISM Streptomyces rimosus. REFERENCE 1 AUTHORS Pujic,P., Plohl,M., Durajlyas,S. and Gamulin,V. TITLE Sequence analysis of rrnF operon from S.rimosus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62884|g509401 (bases 130 to 1658) operon= rrnF gene BASE COUNT 340 a 390 c 515 g 284 t 2847 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -GCUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--C-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UU-AG-( GU-AAU-G-) -C-CUACC-A A|-GGC-GAG CGAG------ -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-UUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UGCACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UCU-G--(- GAGA-)-CAG -G-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-GC--UC-- 2281 UG--UUGC-C AG-CAU-GCC U--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACC--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.4 STM.MACROSPORUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.4 STM.MACROSPORUS_SUBGROUP. ORGANISM 2.16.1.8.4 STM.MACROSPORUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.macspr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces macrosporus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces macrosporus. ORGANISM Streptomyces macrosporus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68099|g1071701 BASE COUNT 327 a 378 c 515 g 262 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--C-G- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- CG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GGAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -GGCA-UUCG A-UAC-GGGC A-GGCUG-GA GUU-----CG G-NA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -CCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---U|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CGU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGACG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-NGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- --GUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A A-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.megspr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces megasporus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces megasporus. ORGANISM Streptomyces megasporus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68100|g1072422 BASE COUNT 317 a 391 c 525 g 255 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-CCG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCCUCG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGGGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-U--C-G- ---GGG-(-- --------GC 541 AU-------- -)-CCU---- CG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-GN-( GU-GAC-GG) -N-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -GGCA-UUCG A-UAC-GGGC A-GGCUG-GA GUU-----CG G-CA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AC----ACG 1981 -CCC-G--(- GAGA-)-CGG -G-UGCU--- ---------- ---CC----- --(CC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- GG-------- --------G| CCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CCG- 2281 UG--UUGC-C AG-CAC-GCC CU-------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------G GGGUGGUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-GGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thline 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermolineatus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermolineatus. ORGANISM Streptomyces thermolineatus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68097|g1071776 BASE COUNT 330 a 377 c 507 g 267 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-CC C--------- ------GG-- G(-GAAA-)C -CCGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-U--C-C- ---AGG-(-- --------GC 541 AU-------- -)-CUU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCG-GUCG A-UAC-GGAC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG AGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -GGC-A--(- GAGA-)-UGU -C-AGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAU-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CUC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.mashue 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces mashuensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces mashuensis. ORGANISM Streptomyces mashuensis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology 141 (Pt 9), 2139-2147 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79323|g525282 DSM 40221 (T) = RIA 1165 = ISP 5221 = IMET 42941 = IFO 12888 = CBS 918.68 = ATCC 23934 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 345 a 382 c 510 g 281 t 2858 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--C-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---C CG-CG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -CUC-A--(- GAGA-)-UG- -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUG- 2281 UG--UUGC-C AG-CAA-UCG C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGAUG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.5 THERMOPHILIC_STREPTOMYCES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.5 THERMOPHILIC_STREPTOMYCES. ORGANISM 2.16.1.8.5 THERMOPHILIC_STREPTOMYCES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thdias 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermodiastaticus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermodiastaticus. ORGANISM Streptomyces thermodiastaticus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68101|g1072423 BASE COUNT 332 a 377 c 505 g 269 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--C--U ---GAG-(-- --------GC 541 AU-------- -)-CUC---A UG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-G A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-CUC- 1321 -UGCA-GUCG A-UAC-GGAC A-GUCUA-GA GUC-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thvio2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP 5443 DSM 40443 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermoviolaceus subsp. thermoviolaceus str. ISP 5443 DSM 40443 (T). ORGANISM Streptomyces thermoviolaceus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 40443 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68096|g1071780 isolate_name= ISP 5443 BASE COUNT 332 a 377 c 507 g 267 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-A--G-G- ---GAG-(-- --------GC 541 AU-------- -)-CUC---C UC-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thviol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermoviolaceus subsp. apingens DSM 41392 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermoviolaceus subsp. apingens DSM 41392 (T). ORGANISM Streptomyces thermoviolaceus. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68095|g1071778 BASE COUNT 331 a 377 c 508 g 267 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-A--G-GA ---CCG-(-- --------CA 541 UG-------- -)-GUC---U CU-GG----G UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thvulg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermovulgaris str. ISP 5444 DSM 40444 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermovulgaris str. ISP 5444 DSM 40444 (T). ORGANISM Streptomyces thermovulgaris. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 40444 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68094|g1071779 isolate_name= ISP 5444 BASE COUNT 328 a 377 c 513 g 268 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---C -ACAC-U-GG 421 -GAU-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AU----- ---------- -------G-A CU-C--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UU-GG----G UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C-U- ---------( -----CUUG- ---------) ---------A 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.thnitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces thermonitrificans str. ISP 5579 DSM 40579 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces thermonitrificans str. ISP 5579 DSM 40579 (T). ORGANISM Streptomyces thermonitrificans. REFERENCE 1 AUTHORS Kim,D., Chun,J., Sahin,N., Hah,Y.C. and Goodfellow,M. TITLE Analysis of thermophilic clades within the genus Streptomyces by 16S ribosomal DNA sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 46, 581-587 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 40579 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z68098|g1071777 isolate_name= ISP 5579 BASE COUNT 327 a 377 c 514 g 268 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCG---C -ACAC-U-GG 421 -GAU-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AU----- ---------- -------G-A CU-C--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UU-GG----G UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C-U- ---------( -----CUUG- ---------) ---------A 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAG-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.6 STM.ALBIDOFLAVUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.6 STM.ALBIDOFLAVUS_SUBGROUP. ORGANISM 2.16.1.8.6 STM.ALBIDOFLAVUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.albflv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces albidoflavus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces albidoflavus. ORGANISM Streptomyces albidoflavus. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76676|g2052194 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.canesc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces canescens. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces canescens. ORGANISM Streptomyces canescens. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76684|g2052221 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.odorif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces odorifer. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces odorifer. ORGANISM Streptomyces odorifer. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76682|g2052242 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.samps2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sampsonii. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sampsonii. ORGANISM Streptomyces sampsonii. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76680|g2052273 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.limosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces limosus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces limosus. ORGANISM Streptomyces limosus. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76679|g2052241 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.felleu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces felleus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces felleus. ORGANISM Streptomyces felleus. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76681|g2052237 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.coeli4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces coelicolor. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces coelicolor. ORGANISM Streptomyces coelicolor. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76678|g2052220 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 371 c 504 g 269 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sampsn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sampsonii. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sampsonii. ORGANISM Streptomyces sampsonii. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63871|g971125 BASE COUNT 340 a 387 c 519 g 285 t 2845 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCG-CU (--UU----- ---------- ---------- 241 --------CG -)GG-CGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAGA-)-CAG -G-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.8.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.8.7 STM.ALBUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.8.7 STM.ALBUS_SUBGROUP. ORGANISM 2.16.1.8.7 STM.ALBUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.diasta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces diastaticus subsp. diastaticus DSM 40496 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces diastaticus subsp. diastaticus DSM 40496 (T). ORGANISM Streptomyces diastaticus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53161 DSM 40496 (T) = IFO 13412 = ATCC 3315 = ISP 5496 BASE COUNT 265 a 297 c 405 g 222 t 3187 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CG-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-AU----G GU-GUAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACU......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. ......UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCNG|G 2701 G-GA-CU-C- A-CGG-N--G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CAUCA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.rutger 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces rutgersensis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces rutgersensis. ORGANISM Streptomyces rutgersensis. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76688|g2052250 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 333 a 371 c 503 g 269 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CC-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.gouger 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces gougerotii. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces gougerotii. ORGANISM Streptomyces gougerotii. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76687|g2052238 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 333 a 372 c 503 g 268 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CC-G--U-CC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.intmed 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces intermedius. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces intermedius. ORGANISM Streptomyces intermedius. REFERENCE 1 AUTHORS Hain,T., Ward-Rainey,N., Kroppenstedt,R.M., Stackebrandt,E. and Rainey,F.A. TITLE Discrimination of Streptomyces albidoflavus strains based on the size and number of 16S-23S ribosomal DNA intergenic spacers JOURNAL Int. J. Syst. Bacteriol. 47 (1), 202-206 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z76686|g2052240 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 334 a 371 c 501 g 268 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--U-CC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G GA-UG----G UG--UAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.euryth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces eurythermus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces eurythermus. ORGANISM Streptomyces eurythermus. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63870|g971135 BASE COUNT 346 a 385 c 514 g 286 t 2845 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- ---------A GC-C--U-CC ---AAG-(-- --------GC 541 AU-------- -)-CUU---G GA-GG----U UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.bluens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces bluensis.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces bluensis. ORGANISM Streptomyces bluensis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79324|g488842 BASE COUNT 340 a 381 c 516 g 283 t 2856 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GGCGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CA-C--U--A ---CAG-(-- --------GC 541 AU-------- -)-CUG---U GG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---GUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-UUCG A-UAC-GGGC U-AGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.brasil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces brasiliensis str. CCIB 71 DSM 43159 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces brasiliensis str. CCIB 71 DSM 43159 (T). ORGANISM Streptomyces brasiliensis. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 43159 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53162 DSM 43159 (T) = IFO 12596 = ATCC 23727 isolate_name= CCIB 71 BASE COUNT 274 a 310 c 425 g 229 t 3138 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CA-C----UA ---CAG-(-- --------GC 541 AU-------- -)-CUG---U GG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... .UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----AAC 1981 -CCU-G--(- GAGA-)-CAG -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG--N-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.sp3890 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces sp.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces sp. ORGANISM Streptomyces sp. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U.F. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81574|g550432 BASE COUNT 337 a 400 c 523 g 263 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--CU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AC----- ---------- -------G-A CG-C--G-CU ---CGG-(-- --------GC 541 AU-------- -)-CCG-A-U GC-GC----G UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|-----C U--AUCA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG CGCAAGAAGC 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----ACA 1981 -CCC-A--(- GAGA-)-UGG -U-G-CC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCACU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CCCUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG -AUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.espino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces espinosus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces espinosus. ORGANISM Streptomyces espinosus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80826|g587544 BASE COUNT 333 a 401 c 520 g 264 t 2858 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--CU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AC----- ---------- -------G-A CA-C--C-GG ---GAG-(-- --------GC 541 AU-------- -)-CUC-C-U CG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-CU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CCGG--- -AA----ACA 1981 -CCC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCACU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CCCUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.glauce 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces glaucescens.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces glaucescens. ORGANISM Streptomyces glaucescens. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. TITLE Nucleotide sequences of streptomycete 16S ribosomal DNA: towards a specific identification system for streptomycetes using PCR JOURNAL Microbiology in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79322|g488843 BASE COUNT 343 a 384 c 510 g 282 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A UU-G--U-CU ---UGG-(-- --------GC 541 AU-------- -)-CCU---U GA-UG----A UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCU-GAA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCU-A--(- GAGA-)-UAG GU-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.psgris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces pseudogriseolus. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces pseudogriseolus. ORGANISM Streptomyces pseudogriseolus. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80827|g587549 BASE COUNT 342 a 383 c 511 g 280 t 2860 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A UC-A--U-CU ---UAG-(-- --------GC 541 AU-------- -)-CUU---G GA-UG----A UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--C-UC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG -AUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.ambofa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces ambofaciens.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces ambofaciens. ORGANISM Streptomyces ambofaciens. REFERENCE 1 AUTHORS Guerineau,M. Pernodet,J.-L., Boccard,F., Alegre,M.-T., Gagnat,J. and TITLE ribosomal RNA gene cluster from Streptomyces ambofaciens Organization and nucleotide sequence analysis of a JOURNAL Gene 79, 33-46 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M27245|g341664 (bases 738 to 2265) BASE COUNT 342 a 388 c 515 g 283 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A UC-C--G-CU ---UGG-(-- --------GC 541 AU-------- -)-CCA---G GC-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUU-A--(- GAGA-)-UAG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.caeles 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces caelestis. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces caelestis. ORGANISM Streptomyces caelestis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80824|g587528 BASE COUNT 341 a 385 c 513 g 279 t 2858 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-A--U-CU ---UGG-(-- --------GC 541 AU-------- -)-CCA---A GG-UG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CCU-G--(- GAGA-)-CAG -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.tnedae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces tendae. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces tendae. ORGANISM Streptomyces tendae. REFERENCE 1 AUTHORS Takeuchi,T., Sawada,H., Tanaka,F. and Matsuda,I. TITLE Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 46, 476-479 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63873|g971127 BASE COUNT 344 a 391 c 513 g 282 t 2846 others ORIGIN 1 .......... .......... .......... .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-C--U-CG ---CAG-(-- --------GC 541 AU-------- -)-CUG---C GA-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAUG- GG--C-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAG-GCC ---------- ---------- ----(---CU ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGCUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.coelic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces coelicolor str. A3(2). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces coelicolor str. A3(2). ORGANISM Streptomyces coelicolor. REFERENCE 1 AUTHORS Baylis,H.A. and Bibb,M.J. TITLE Transcriptional analysis of the 16S rRNA gene of the rrnD gene set of Streptomyces coelicolor JOURNAL Mol. Microbiol. 2, 569-579 (1988) STANDARD No information REFERENCE 2 AUTHORS Baylis,H.A. and Bibb,M.J. TITLE The nucleotide sequence of a 16S rRNA gene from Streptomyces coelicolor A3(2) JOURNAL Nucleic Acids Res. 15, 7176-7176 (1987) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y00411 isolate_name= A3(2) NB: strain 1147 A3(2)? BASE COUNT 346 a 390 c 510 g 282 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. .CAUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-C--U-CG ---CAG-(-- --------GC 541 AU-------- -)-CUG---C GA-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUGUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-C-CAC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GN- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --G-(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.livida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces lividans str. TK21 [gene=rrnB gene]. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces lividans str. TK21 [gene=rrnB gene]. ORGANISM Streptomyces lividans. REFERENCE 1 AUTHORS Suzuki,Y. and Yamada,T. TITLE lividans TK21 The nucleotide sequence of 16S rRNA gene from Strepomyces JOURNAL Nucleic Acids Res. 16, 370-370 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y00484 operon= rrnB gene isolate_name= TK21 BASE COUNT 346 a 388 c 513 g 284 t 2845 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..AUUCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-C--U-CG ---CAG-(-- --------GC 541 AU-------- -)-CUG---C GA-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAUG- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.livi64 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces lividans str. TK64. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces lividans str. TK64. ORGANISM Streptomyces lividans. REFERENCE 1 AUTHORS Chang,S.C., Yang,W.C. and Wu Lee,Y.H. TITLE The 16S rRNA gene of Streptomyces lividans TK64 contains internal promoters JOURNAL Biochim. Biophys. Acta 1129, 219-222 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63847 isolate_name= TK64 BASE COUNT 143 a 163 c 203 g 123 t 3744 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)...G- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-CG- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUGC C|C|C-GCC- U-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-C-G- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.coeli3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces coelicolor.. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces coelicolor. ORGANISM Streptomyces coelicolor. REFERENCE 1 AUTHORS Van Wezel,G.P., Vijgenboom,E. and Bosch,L. TITLE A comparative study of the ribosomal RNA operons of Streptomyces coelicolor A3(2) and sequence analysis of rrnA JOURNAL Nucleic Acids Res. 19, 4399-4403 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60514 BASE COUNT 346 a 389 c 512 g 281 t 2848 others ORIGIN 1 .......... .......... .......... ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-C--U-CG ---CAG-(-- --------GC 541 AU-------- -)-CUG---C GA-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- CU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAA-GCC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-AAG--GC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U..~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.coeli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces coelicolor str. M145. ACCESSION No information KEYWORDS No information. SOURCE Streptomyces coelicolor str. M145. ORGANISM Streptomyces coelicolor. REFERENCE 1 AUTHORS Van Wezel,G.P., Vijgenboom,E. and Bosch,L. TITLE A comparative study of the ribosomal RNA operons of Streptomyces coelicolor A3(2) and sequence analysis of rrnA JOURNAL Nucleic Acids Res. 19, 4399-4403 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60514 isolate_name= M145; A3(2) BASE COUNT 347 a 387 c 513 g 281 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACU---- ---------- -------G-A CC-C--U-CG ---CAG-(-- --------GC 541 AU-------- -)-CUG---C GA-GG----U UC--GAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-ACG|U CGG---UUGU G-AAA-GC-G CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAU-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- CU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -CA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GG-AGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CC--G 1861 C-A--CA-AG CG-CGG-AGC A-U-GU-GGC -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -AUC-A--(- GAGA-)-UGG -U-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AGGCAA-GCG C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGGUGUUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CC-G-CCA --GG(-GGUC AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-AAG--GC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAUG-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stm.albus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptomyces albus subsp. albus DSM 40313 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptomyces albus subsp. albus DSM 40313 (T). ORGANISM Streptomyces albus. REFERENCE 1 AUTHORS Stackebrandt,E., Witt,D., Kemmerling,C., Kroppenstedt,R. and Liesack,W. TITLE Designation of Streptomycete 16S and 23S rRNA-based target regions for oligonucleotide probes JOURNAL Appl. Environ. Microbiol. 57, 1468-1477 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53163 DSM 40313 (T) = IFO 13014 = ATCC 3004 = ISP 5313 BASE COUNT 270 a 307 c 426 g 237 t 3136 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....UCACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAC-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-G--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---C UC-CG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -NCCGGC... .........( .......... .........) .......... |......... 1201 ..G-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---AUGU G-AAA-GC-C CG-GUG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-CA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -CG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -GUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAACUCC U--------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -GGAGGUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-GCA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9 ARTHROBACTER_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9 ARTHROBACTER_AND_RELATIVES. ORGANISM 2.16.1.9 ARTHROBACTER_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9.1 MICROBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9.1 MICROBACTERIUM_GROUP. ORGANISM 2.16.1.9.1 MICROBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.lig428 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. e428122. str. e428122. ACCESSION No information KEYWORDS No information. SOURCE str. e428122. str. e428122. ORGANISM str. e428122. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58343|g1718219 biol_source= lignin enrichment culture isolate_name= e428122 BASE COUNT 74 a 67 c 92 g 72 t 4071 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... ..U-GC-GGA -UUAGUU-CG -(AUGCAA-C G)--CGAAGN 1921 ANCCUUA-CC AAG-GG-UUG ACA-UA|-N- ---------A ---CGAG--- -AA----CGC 1981 -UGC-A--(- GAAA-)-UGU -A-GAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGN-C-GG -UA--CAAAG GGN-U-G... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.levfor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium laevaniformans. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium laevaniformans. ORGANISM Microbacterium laevaniformans. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21344|g577717 IFO 14471 (T) = IMET 10713 = DSM 20140 = ATCC 15953 = NCIMB 9659 NB: missing data presumed between 83-194r BASE COUNT 335 a 327 c 442 g 274 t 2998 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCGG-AA (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---C-GCUG- 361 -A-CG----- ---------- ---------- ---------G C-UCUG---U -ACU-----G 421 -GAU--A-C- ---------- ---------- -(-GAAA-)- ---------- ---------- 481 ---------- ---------- -------U-C CG-U-----G ---GAG-(-- --------GC 541 AU-------- -)-CUU---C AACGUC---G GU--GAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--UG G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUC AU-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-AUGA U--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -UGC-A--(- GAAA-)-UGU -A-GAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.dexlyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium dextranolyticum str. M-73 IFO 14592 (T). ACCESSION No information KEYWORDS No information. SOURCE Microbacterium dextranolyticum str. M-73 IFO 14592 (T). ORGANISM Microbacterium dextranolyticum. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21341|g577714 IFO 14592 (T) = DSM 8607 isolate_name= M-73 NB: missing data presumed between 83-194r BASE COUNT 327 a 320 c 433 g 264 t 3032 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -(------)- ---------- ---------- 481 ---------- ---------- -------A-A AC-G--A--C ---AAC-(-- ------CGGC 541 AU-------- -)-GUU---C AA-CG----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--UG G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUA CU-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGC 1981 -UGC-A--(- GAAA-)-UGU -A-GAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.aurum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium aurum. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium aurum. ORGANISM Microbacterium aurum. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21340|g577713 NB: missing data presumed between 83-194r BASE COUNT 326 a 319 c 436 g 259 t 3036 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAAG------ (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -(------)- ---------- ---------- 481 ---------- ---------- ---------- ---------G ---GAG-(-- --------CC 541 AU-------- -)-CUU---C AG-CAC---G UG--GAAA-- ---GA----- ---------- 601 --(------- ----ACU--- ---)------ ---------| -----U--CG GG-GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U GG-AGG-C(- UC-A)A-CCU -CC-A-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUC AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(GAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CA--UUG- 2281 UG--UUCC-A UG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.lactic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium lacticum. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium lacticum. ORGANISM Microbacterium lacticum. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21343|g577716 IFO 14135 (T) = NCFB 747 = DSM 20172 = ATCC 8180 = NCIMB 8540 = DSM 20427 (T) NB: missing data presumed between 83-194r BASE COUNT 338 a 335 c 451 g 270 t 2982 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGGCGG-AG (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- --CGG-G-GG 421 -GAC-AA-CC A--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-C CU-C--C--- ---ACG-(-- --------GC 541 AU-------- -)-------A A--UC----G GU--GAAA-- ---------- ---------- 601 --(------- -GUUUUUUUG ---)------ ---------| ---------- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GGU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-AA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-CG-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.lacti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium lacticum. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium lacticum. ORGANISM Microbacterium lacticum. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77441|g515779 DSM 20427 (T) = NCFB 747 = DSM 20172 = ATCC 8180 = NCIMB 8540 = IFO 14135 (T) BASE COUNT 366 a 355 c 472 g 280 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGGCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGCU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-G CU-G--C--G ---AAG-(-- --------GC 541 AU-------- -)-CUU---C AG-CA----G CU-GGAAA-- ---GA----- ---------- 601 --(------- ----ACU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UN-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-CC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GAGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)ACAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-AA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.imperi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium imperiale. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium imperiale. ORGANISM Microbacterium imperiale. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21342|g577715 IFO 12610 (T) = DSM 20530 = IAM 1654 = ATCC 8365 = NCIMB 9888 NB: missing data presumed between 83-194r BASE COUNT 326 a 318 c 439 g 261 t 3032 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAG-AG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -(------)- ---------- ---------- 481 ---------- ---------- ---------- ---------G ---UAC-(-- ---------- 541 ---------- -)-GGU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--CG GG-GUC---- 661 ----AGGG-- AUG---G-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -AA-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUC AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---GAGG--- -AA----ACG 1981 -GCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CA--UUG- 2281 UG--UUCC-A UG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-CG-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.arbors 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium arborescens. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium arborescens. ORGANISM Microbacterium arborescens. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 124, 11-16 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21339|g577712 IFO 3750 = DSM 20754 (T) = NCIMB 8185 = ATCC 4358 NB: missing data presumed between 83-194r BASE COUNT 321 a 317 c 437 g 259 t 3042 others ORIGIN 1 .......... .......... .......... .........A AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAG-AG-AG (---U----- ---------- ---------- 241 --------UG -)CU-CUGGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---------- ---------- -(------)- ---------- ---------- 481 ---------- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--CG GG-GUC---- 661 ----AGGG-- AUG---G-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUC AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---GAGG--- -AA----ACG 1981 -UCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CA--UUG- 2281 UG--UUCC-A UG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.arbor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium arborescens. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium arborescens. ORGANISM Microbacterium arborescens. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77443|g515842 DSM 20754 (T) = NCIMB 8185 = ATCC 4358 = IFO 3750 BASE COUNT 359 a 353 c 475 g 281 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G CU-G--C--G ---ACC-(-- --------GC 541 AU-------- -)-GGU---C AG-UA----G CU-GGAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---GAGG--- -AA----ACG 1981 -UCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GA...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mbm.imper2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microbacterium imperiale. ACCESSION No information KEYWORDS No information. SOURCE Microbacterium imperiale. ORGANISM Microbacterium imperiale. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77442|g516143 DSM 20530 = IFO 12610 (T) = IAM 1654 = ATCC 8365 = NCIMB 9888 BASE COUNT 359 a 351 c 479 g 281 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G CU-G--C--G ---AUC-(-- --------GC 541 AU-------- -)-GGU---C AG-UA----G CU-GGAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--GA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---GAGG--- -AA----ACG 1981 -GCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aub.testac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aureobacterium testaceum. ACCESSION No information KEYWORDS No information. SOURCE Aureobacterium testaceum. ORGANISM Aureobacterium testaceum. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77445|g516261 DSM 20166 (T) = IMET 10361 = IFO 12675 = ATCC 15829 = NCIMB 11430 BASE COUNT 354 a 345 c 478 g 292 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-G AC-G--U--G ---AUC-(-- --------GC 541 AU-------- -)-GGU---C GU-GU----U UG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GA-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aub.Mainz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aureobacterium sp. str. Mainz. ACCESSION No information KEYWORDS No information. SOURCE Aureobacterium sp. str. Mainz. ORGANISM Aureobacterium sp. REFERENCE 1 AUTHORS Husmann,M. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93589|g1103523 isolate_name= Mainz BASE COUNT 357 a 356 c 467 g 304 t 2892 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACACGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-G AC-G--U--G ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-CG----U UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UCUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- RUK---N-|N YUCNC----- -GN|----CC U--AUCA-G- CUU-G---UU 721 GK-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GNC-KU- CGA------- -----CG-GN 781 U-AG-C-CS| -G-SCU--(G -AGN)-GGGU ----GA-C-- CGR-C|C-AC -ACUGG-G-W 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UNCG)--G KMG-GC-AG- CCA---GN-G 901 GGGNAAUNUU G-CACAAU-- NG-GCC(GAN A)-GCC-UGA UGCA|-RNAA CNCC-GC-GU 961 G-A-GG-G-A U-GAU--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AN-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCGNC CGCGGUA-A) U-A-C-GUAG |-GNCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UACA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-UA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--N 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C N)--CGANGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)UCCCGC AA-------- CGAGNC--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-NN A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)ACUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-N-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CN-C AUG--CNACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (USCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.UW103 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. UW str. UW 103/A31. ACCESSION No information KEYWORDS No information. SOURCE str. UW str. UW 103/A31. ORGANISM str. UW. REFERENCE 1 AUTHORS Liesack,W., Soeller,R., Stewart,T., Haas,H., Giovannoni,S. and Stackebrandt,E. TITLE The influence of tachytelically (rapidly) evolving sequences on the topology of phylogenetic trees- intrafamily relationships and phylogenetic position of Planctomycetaceae as revealed by comparative analysis of 16S ribosomal RNA sequences JOURNAL Syst. Appl. Microbiol. 15, 357-362 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62913|g535119 isolate_name= UW 103/A31 BASE COUNT 347 a 348 c 471 g 290 t 2920 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GUCGG-U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUCGG-A- (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-G AC-G--U--G ---AUC-(-- --------GC 541 AU-------- -)-GGU---C UG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- C--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)CG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AA-G ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C GG-AGG-C(- UC-A)A-CCU -CC-G-GCC- 1321 -UGGA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-UGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUAUCAGGA GGAACACCGA UGGCGAAGGC AGAUCUCUGG 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-G.. .......... 1561 .......... ...(...... ....)..... ......UA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- --------AA ACGCGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A--U-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGC--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGUUGGG AUUCGG--G. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aub.liqfac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aureobacterium liquefaciens. ACCESSION No information KEYWORDS No information. SOURCE Aureobacterium liquefaciens. ORGANISM Aureobacterium liquefaciens. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77444|g515840 DSM 20638 (T) = ATCC 43647 BASE COUNT 357 a 351 c 478 g 288 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACACGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-G AC-G--U--G ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C GG-AGG-C(- UC-A)A-CCU -CC-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-UC(-G AA-G)ACAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-ACA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.marinoty 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium marinotypicum. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium marinotypicum. ORGANISM Flavobacterium marinotypicum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS NB: The genus name should have brackets around it this is incorrectly named BASE COUNT 346 a 340 c 472 g 289 t 2929 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACACGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-G AC-G--U--G ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCN-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C GG-AGG-C(- UC-A)A-CCU -CC-N-NNC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G G-)------- AC-------- -----A---| CUC-GU-AAA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pY3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone py3.. ACCESSION No information KEYWORDS No information. SOURCE clone py3. ORGANISM clone py3. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27861|g903932 BASE COUNT 91 a 97 c 120 g 84 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .GAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CUGC- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGGA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-UA- AUU-AGGA-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aub.estaro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aureobacterium esteraromaticum. ACCESSION No information KEYWORDS No information. SOURCE Aureobacterium esteraromaticum. ORGANISM Aureobacterium esteraromaticum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Former RDP Sids: Aub.sp8091 ATCC 8091 (T) = IFO 3751 = DSM 8609 NB: former name Aureobacterium sp. basonym Flavobacterium esteraromaticum BASE COUNT 343 a 339 c 478 g 296 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------U-C CC-G--U--C ---ACC-(-- --------GC 541 AU-------- -)-GGU---G UG-CG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCNC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -NCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UU-C CG-AGG-C(- UC-A)A-CCU -CG-G-NCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GU-CC---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-GAA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- AA-UAC-C(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5411 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5411.. ACCESSION No information KEYWORDS No information. SOURCE clone 5411. ORGANISM clone 5411. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89327 BASE COUNT 55 a 48 c 69 g 31 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .GA------- -----CG-CG 781 UCAA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGN-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCAA CGCC-GN-GU 961 G-A-GG-G-A U-GAGACGCG CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -UA....... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aub.barker 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aureobacterium barkeri. ACCESSION No information KEYWORDS No information. SOURCE Aureobacterium barkeri. ORGANISM Aureobacterium barkeri. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77446|g515020 DSM 20145 (T) = JCM 1343 = IAM 12585 = ATCC 15954 = NCIMB 9658 BASE COUNT 344 a 349 c 480 g 295 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-CA G--------- ------CC-- G(-GAAA-)C -GGUU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------C-A UC-A--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----G UG-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GG- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- C-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -UU-GU-GGG -GG-CC---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCCG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-CUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.succi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces succinolyticus str. CNF 201. ACCESSION No information KEYWORDS No information. SOURCE Agromyces succinolyticus str. CNF 201. ORGANISM Agromyces succinolyticus. REFERENCE 1 AUTHORS Suzuki,K. and Sasaki,J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45055|g939791 isolate_name= CNF 201 BASE COUNT 351 a 355 c 471 g 291 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCGGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACA)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-CCAC CCCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGCCU-A ACUAC-GUG( CCA--GCACC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUG-GA GUG-----CG G-UA-GGGGA GAU-U|GAAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CCC 1981 -CGC-A--(- GAAA-)-UGU -G-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-AU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.fuco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces fucosus subsp. hippuratus JCM 9086. ACCESSION No information KEYWORDS No information. SOURCE Agromyces fucosus subsp. hippuratus JCM 9086. ORGANISM Agromyces fucosus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45061|g939788 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist JCM 9086 = VKM Ac-1352 (T) BASE COUNT 349 a 352 c 464 g 297 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGNC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-UCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)---CCC -AGA-C-UCC -(UACG)--G GAG-AC-AC- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UACA|-CCAC CGCC-GA-GU 961 G-U-GG-G-A U-GUC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--NCANC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUC---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UCCA-GUGG G-UAC-GGGC A-GACUG-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-UC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCU C|C|G-CCU- --GGGAGUAC 1801 GGC-C---(C CCA)---A-G GC-UAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.ramos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces ramosus. ACCESSION No information KEYWORDS No information. SOURCE Agromyces ramosus. ORGANISM Agromyces ramosus. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77447|g516314 DSM 43045 (T) = IFO 13899 = NCIMB 10801 = ATCC 25173 BASE COUNT 346 a 352 c 490 g 294 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUCUGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCUGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUG-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-A- ---------C ---CGAG--- -AA----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GG-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.cerin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces cerinus subsp. cerinus DSM 8595 (T). ACCESSION No information KEYWORDS No information. SOURCE Agromyces cerinus subsp. cerinus DSM 8595 (T). ORGANISM Agromyces cerinus. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77448|g515019 BASE COUNT 351 a 349 c 488 g 294 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUG-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.ceri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces cerinus subsp. cerinus JCM 9083 (T). ACCESSION No information KEYWORDS No information. SOURCE Agromyces cerinus subsp. cerinus JCM 9083 (T). ORGANISM Agromyces cerinus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45060|g939787 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist JCM 9083 (T) = VKM Ac-1340 NB: bases after 1134r presumed erroneous duplication BASE COUNT 353 a 345 c 488 g 299 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|C CUG---CUGU G-AAG-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUG-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-AU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-UCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G AU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGU A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -CUC-A--(- GAUA-)-UGU -G-GAAC--- ---------- ---UC----- --(UG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGA-C AG-CAC---- -GUAUGUUGG CAGCAC---- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-AACC CGAA-GGCCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.medio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces mediolanus. ACCESSION No information KEYWORDS No information. SOURCE Agromyces mediolanus. ORGANISM Agromyces mediolanus. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77449|g515023 Former RDP Sids: Cor.mediol DSM 20152 = JCM 3346 = NCTC 7206 = NCIMB 7206 = ATCC 14004 NB: seq after pos 579 removed; appear extraneous (UAGCGUUUGUCGCGUCUGCUGUGAAAACUAGAGGCUCAACCUCUA) former name "Corynebacterium mediolanum" BASE COUNT 343 a 347 c 488 g 294 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GG----G GUGGGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U AG-AGG-C(- UC-A)A-CCU -C....GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUU-GA GUG-----GU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--CU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(-GA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.medi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces mediolanus. ACCESSION No information KEYWORDS No information. SOURCE Agromyces mediolanus. ORGANISM Agromyces mediolanus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45052|g939786 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist BASE COUNT 345 a 352 c 484 g 303 t 2892 others ORIGIN 1 .......... .......... .......... .........U AGAGUU(U-G A)U-CCU|-G 61 UCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-CCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAGUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-A-UAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUU---CUGU G-AAA-AC-U AG-AGG-C(- UC-A)A-CCU -CU-A-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUU-GA GUG-----GU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--CU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG--A- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U--C-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-C-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAGG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.medi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces mediolanus str. CNF 186. ACCESSION No information KEYWORDS No information. SOURCE Agromyces mediolanus str. CNF 186. ORGANISM Agromyces mediolanus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45054|g939790 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist isolate_name= CNF 186; K. Aoki AN-15 BASE COUNT 337 a 347 c 469 g 292 t 2931 others ORIGIN 1 .......... .......... .......... .........U AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-NCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-N C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-CCAA CCCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-AC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U AG-AGG-C(- UC-A)A-CCU -CU-A-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUU-GA GUG-----GU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--CU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAA)CCCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 U-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-A....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.medi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces mediolanus str. CNF 208 JCM 9633. ACCESSION No information KEYWORDS No information. SOURCE Agromyces mediolanus str. CNF 208 JCM 9633. ORGANISM Agromyces mediolanus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Organism information Culture collection: JCM 9633 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45056|g939792 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist isolate_name= CNF 208 BASE COUNT 343 a 349 c 473 g 300 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGUC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-NCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-CCAA CCCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAAC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUC---CUGU G-UAA-AC-U AG-AGG-C(- UC-A)A-CCU -CU-A-UCC- 1321 -UCCG-GUGG G-UAC-GGGC A-GACUU-GA GUG-----GU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-UCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-UC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--CU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUU-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Agmy.medi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agromyces mediolanus str. CNF 183. ACCESSION No information KEYWORDS No information. SOURCE Agromyces mediolanus str. CNF 183. ORGANISM Agromyces mediolanus. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45053|g939789 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist isolate_name= CNF 183; K. Aoki AN-9 BASE COUNT 350 a 371 c 474 g 315 t 2866 others ORIGIN 1 .......... .......... .......... .......... .UAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-UCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UACA|CCCAC CGCC-GC-GU 961 G-C-GG-G-A U-GUC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--CCANC CACGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-AC -G|-GU-UU- 1261 G-UC-GCG|U CUC---CUGU G-AAA-UC-U AG-AGG-C(- UC-A)A-CCU -CU-A-UCC- 1321 -UCCA-GUGG G-UAC-GGGC A-GACUU-GA GUG-----GU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-UCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-NC(-G AA-G)NCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--CU-UA CUGACN-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CC)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|C-CCU- G-GGGAGUAC 1801 GCC-C---(C CAA)---G-A CU-AAAACUC -ACA-GGAAU UG-UCGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGCGG-AGC A-U-AC-GGA -UUAAUU-CG -(AUACAA-C G)--CGCAGA 1921 A-CCUUA-CC ACG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AG----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GUGAUA |---C|A--G 2161 GU-GG-UGCU UG|N-UUG-- UCG-UCA|-G C-U---CG-U |CU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-NCCNC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-AAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-C-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-A-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UAA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-C-C- GA-UGU-C(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAC-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGAC-GUAC C(GGA-A)GG UGCGGG--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Whippl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Whipple's disease-associated. ACCESSION No information KEYWORDS No information. SOURCE Whipple's disease-associated. ORGANISM Whipple's disease-associated. REFERENCE 1 AUTHORS Wilson,K.H., Blitchington,R.B., Frothingham,R. and Wilson,J .A. TITLE Phylogeny of the Whipple's disease-associated organism JOURNAL Lancet 338, 474-475 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M77832 BASE COUNT 163 a 171 c 203 g 143 t 3696 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(AUUA-G AUAC)-CCU- ----DGUA-G UC----CNC- N-CC-NN--A 1621 NAC-G-UNNG G--CN-NN-- -------N|N -CN-NN-NNG -GG-UGG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------CGC -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-N NU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGN A-U-GC-GGA -UUAAUU-CA -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG AUA-UA|-U- ---------A ---CCGG--- -AA----AGG 1981 -CGU-A--(- GAGA-)-UAC -GUCCC---- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUG- 2281 UG--UUGC-N NN-NNC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G. .......... 2761 ......GG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C -UUCG-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- AA-UAU-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UNN-UGAA A--GC-UGG- UA-AC-ACCC .GAA-G-CCG 3121 G-UGA-C-UU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CC-GA-UG A-AGGU-GGG AUU-GG--U- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tph.whippl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tropheryma whippelii str. patient 1. ACCESSION No information KEYWORDS No information. SOURCE Tropheryma whippelii str. patient 1. ORGANISM Tropheryma whippelii. REFERENCE 1 AUTHORS Relman,D.A., Schmidt,T.M., MacDermott,R.P. and Falkow,S. TITLE Identification of the uncultured bacillus of Whipple's disease JOURNAL N. Engl. J. Med. 327, 293-301 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M87484 isolate_name= patient 1 BASE COUNT 312 a 319 c 443 g 247 t 3055 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---A -ACUU-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-AA 481 AU-ACG---- ---------- -------A-C CC-A--U--G ---AGG-(-- --------GC 541 AU-------- -)-CCU---C UG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AU-C CG-AGG-C(- UC-A)A-CCU -CG-G-ACC- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG A-UA-GGGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCUCUG-- ---------- ---------- ---------G 1501 GUC--GC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AC-GU-GGG -GG-UGG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------CGC -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CA -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG AUA-UA|-U- ---------A ---CCGG--- -AA----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUCG-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- AA-UAU-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.aquati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "aquaticum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "aquaticum". ORGANISM Corynebacterium "aquaticum". REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77450|g515021 DSM 20146 = NCIMB 9460 = ATCC 14665 = JCM 1368 BASE COUNT 369 a 355 c 471 g 278 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CC-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-A CU-G--C--G ---AAG-(-- --------GC 541 AU-------- -)-CUU---C AG-CA----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---ACU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-NC(-G AA-G)ACAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GCA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCNCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCU-A--(- GAAA-)-UAG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.aquat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "aquaticum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "aquaticum". ORGANISM Corynebacterium "aquaticum". REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45057|g939825 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist JCM 1368 = NCIMB 9460 = ATCC 14665 = DSM 20146 BASE COUNT 366 a 348 c 470 g 282 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CC-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-A CU-G--C--G ---AAG-(-- --------GC 541 AU-------- -)-CUU---C AG-CA----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---ACU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCU-A--(- GAAA-)-UAG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGN-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-UGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC GAAA-G-CCG 3121 GGUGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A GCCC-GU-CG A-AGGU-GGU AUC-GG-UG- AUU-AGGA-C 3301 U---A-GUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.xyli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter xyli subsp. cynodontis str. Cxc. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter xyli subsp. cynodontis str. Cxc. ORGANISM Clavibacter xyli. REFERENCE 1 AUTHORS Sathyamoorthy,M., Alcorn,S.C., Lohnas,G.L., Anderson,J.J. and Uratani,B.B. TITLE Identification and characterization of the ribosomal RNA-encoding genes in Clavibacter xyli subsp. Cynodontis JOURNAL Gene 108, 47-53 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60935 isolate_name= Cxc BASE COUNT 371 a 370 c 492 g 291 t 2852 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACCAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGG GA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CC-- G(-GAAA-)C -GGAA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-A CC-G--C--G ---GAG-(-- --------GC 541 AU-------- -)-CUC---U AG-CG----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---ACU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-G-) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AA----CGG 1981 -GCC-A--(- GAAA-)-UGG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-GAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lbc.komaga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leucobacter komagatae. ACCESSION No information KEYWORDS No information. SOURCE Leucobacter komagatae. ORGANISM Leucobacter komagatae. REFERENCE 1 AUTHORS Takeuchi,M., Weiss,N. and Yokota,A. TITLE Leucobacter komagatae gen. nov., sp. nov., a new aerobic, gram-positive, non-sporing rod with LL-diaminobutyric acid in the cell wall JOURNAL Unpublished (1993) STANDARD No information REFERENCE 2 AUTHORS Takeuchi,M., Weiss,N., Schumann,P. and Yokota,A. TITLE Leucobacter komagatae gen. nov., sp. nov., a new aerobic gram-positive, nonsporulating rod with 2, 4-diaminobutyric acid in the cell wall JOURNAL Int. J. Syst. Bacteriol. 46 (4), 967-971 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D17751|g1772310 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 320 c 434 g 266 t 3036 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUCU C......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ....U----G CC-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----CUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUA-G---AU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A U|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCUC -GGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-UC-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-CUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUC--UG-UA AUGACG-CUC AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-AGG -GC-CUG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCUG-UGU 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUU-C C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGG 1981 -GCG-A--(- GAGA-)-UCG -U-CAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --UG(-GU-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAC-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GA -UA--CAAAG GGC-U-G-G- CA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG A-C....... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S10 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S10. str. S10. ACCESSION No information KEYWORDS No information. SOURCE str. S10. str. S10. ORGANISM str. S10. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31489|g1143131 isolate_name= S10 BASE COUNT 210 a 203 c 274 g 177 t 3512 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-NGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUANUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -ACU-G--(- GAGA-)-CAG -U-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -----C--A| CUC-GU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGA-C-GG -UA--CAAUG GGC-U-G-C- AA-UAC-C(G 2881 -GAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-AC UNGUA----C 3061 ACACC-CCC. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.16a 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 16a.. ACCESSION No information KEYWORDS No information. SOURCE clone 16a. ORGANISM clone 16a. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89278 BASE COUNT 54 a 47 c 69 g 32 t 4174 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 U-AA-G-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -ACUGG-GCA 841 (CUGA-GA-C ACG)--GCC- -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-UCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 UACCGGG... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ac.jenensi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Agrococcus jenensis. ACCESSION No information KEYWORDS No information. SOURCE Agrococcus jenensis. ORGANISM Agrococcus jenensis. REFERENCE 1 AUTHORS Groth,I., Schumann,P., Weiss,N., Martin,K. and Rainey,F.A. TITLE Agrococcus jenensis gen. nov., sp. nov., a new genus of actinomycetes with diaminobutyric acid in the cell wall JOURNAL Int. J. Syst. Bacteriol. 46 (1), 234-239 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92492|g1222631 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 367 a 349 c 472 g 285 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUCC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- CAA--UGU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GA-C--C--G ---GAG-(-- --------GC 541 AU-------- -)-CUC---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---ACU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUC---A-|G CUCAC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CGAG--- -AA----CGC 1981 -ACU-G--(- GAGA-)-CAG -U-GAAC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GA-------- -------CA| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5011 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5011.. ACCESSION No information KEYWORDS No information. SOURCE clone 5011. ORGANISM clone 5011. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89323 BASE COUNT 51 a 46 c 71 g 29 t 4179 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|.....NNN NNA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AUG)AGGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA--A-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG-GAAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCAA CGCC-GN-GU 961 G-G-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GG-CA 1021 --GG-GAA-- GA-AG-N--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.5111 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone 5111.. ACCESSION No information KEYWORDS No information. SOURCE clone 5111. ORGANISM clone 5111. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89324 BASE COUNT 52 a 46 c 72 g 29 t 4177 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|..AC-G-- GGA------- -----CG-GG 781 U--G-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-NA-C NCG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCAA CGCC-GN-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GAA-- GA-AG-N--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9.2 CLAVIBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9.2 CLAVIBACTER_GROUP. ORGANISM 2.16.1.9.2 CLAVIBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1031 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1031. str. SBR1031. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1031. str. SBR1031. ORGANISM str. SBR1031. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84474|g871595 isolate_name= SBR1031 BASE COUNT 92 a 93 c 135 g 66 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGUG-GCGA- 361 -C-CG-GG-U GCGU---AAC -AC-GUAGC- UGA--CCU-G C-CCUU---C -AGCG-G-GG 421 -GAU-AA-CG A--------- ------GC-- C(-GAAA-)G -GUUC-G--C UAAUACC-GC 481 AUGGAC---- ---------- -------U-C UG-A--G-CG ---A-U-(-- ---------U 541 AG-------- -)-AAG---- GC-UU----A GA-GGAAA-- ---CU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--G- G--CUG---- 661 ----AAGG-- AGG---G-|G GCUGC----- -GG|----CC C--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AGA-AG) -C-UCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-G-GG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CCC-C|C-AC -ACUGG-G-A 841 (CUGA-CA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 AGG-GAUAUU G-GUCAAU-- GG-GC-(GCA A)-GCC-UGA ACCA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A U-GAC--G-G NC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.mich11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. sepedonicus. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. sepedonicus. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Mirza,M.S., Rademaker,J.L.W., Janse,J.D. and Akkermans,A.D.L . TITLE Specific 16S ribosomal RNA targeted oligonucleotide probe against Clavibacter michiganensis subsp. sepedonicus JOURNAL Can. J. Microbiol. 39 (11), 1029-1034 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S70780|g545240 (bases 1 to 200) BASE COUNT 98 a 95 c 130 g 77 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ..CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---U CU-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CG--C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.AA- ---C)G-CA- UUAA-GUUCC -|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -UGC-A--(- GAGA-)-UGU -G-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. nebraskensis LMG 5627. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. nebraskensis LMG 5627. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria JOURNAL Can. J. Microbiol. 41, 925-929 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09764|g836878 BASE COUNT 351 a 343 c 470 g 286 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .UAAC-GN-- UGGN-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -UGC-A--(- GAGA-)-UGU -G-CGCC--- ---------- ---CC----- --(CC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GC-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-AG-G-A G-CU-NU-CG A-AGGU-GG. .......... .......... 3301 .......... .......... ........AC A(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. michiganensis LMG 7333. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. michiganensis LMG 7333. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria JOURNAL Can. J. Microbiol. 41, 925-929 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09761|g836875 BASE COUNT 356 a 346 c 475 g 292 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGGAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UNCC--- ---------- ---CC----- --(CC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-AG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGNGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. insidiosus JCM 1369. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. insidiosus JCM 1369. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45051|g939823 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist JCM 1369 = ATCC 10253 BASE COUNT 355 a 335 c 470 g 292 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-U GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUU-- ---------- ---------- ---------U 1501 UNC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GN--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GN-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-NCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NU-AAAACUC -AAA-GGAAU UG-ACGGN-G -G-C-CC--G 1861 C-A--CA-CG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGN-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 N-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-U- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GAUCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.mich10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis.. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE A procedure combining in situ hybridization and immunofluorescence for detection of Clabibacter michiganensis subsp. sepedonicus JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U30254|g927278 BASE COUNT 360 a 352 c 484 g 294 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-C--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.mich12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis.. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE A procedure combining in situ hybridization and immunofluorescence for detection of Clabibacter michiganensis subsp. sepedonicus JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L43096|g871786 BASE COUNT 360 a 352 c 484 g 294 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-C--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michgn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77434|g516309 BASE COUNT 359 a 344 c 481 g 287 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-C--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. sepedonicus LMG 2889. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. sepedonicus LMG 2889. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria JOURNAL Can. J. Microbiol. 41, 925-929 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09763|g836877 BASE COUNT 356 a 347 c 479 g 295 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-C--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAC ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGNGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. michiganensis JCM 3345. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. michiganensis JCM 3345. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Suzuki,K.-I., Sasaki,J., Uramoto,M., Nakase,T. and Komagata ,K. TITLE Agromyces mediolanus sp. nov., nov. rev., comb. nov., a species for "Corynebacterium mediolanum" Mamoli 1939 and for some aniline-assimilating bacteria which contain 2 ,4-diaminobutyric acid in the cell wall peptidoglycan JOURNAL Int. J. Syst. Bacteriol. 46, 88-93 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45059|g939824 Ref 1: ATCC cat# published as ATCC 14465 which doesn't exist JCM 3345 = NCPPB 170 BASE COUNT 363 a 342 c 479 g 298 t 2894 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G NC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGN-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CUGG--- -AA----ACA 1981 -UGC-A--(- GAAA-)-UGU -GUUGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCGGUCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)NCCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUU- 2281 UUG-UUGN-C AGGAAC---- ---------- ---------- ---G(---UU ---AAU--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAN-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-C CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --GCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77435|g515024 BASE COUNT 362 a 343 c 479 g 287 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CGCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAAA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clv.michg7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clavibacter michiganensis subsp. insidiosus LMG 3663. ACCESSION No information KEYWORDS No information. SOURCE Clavibacter michiganensis subsp. insidiosus LMG 3663. ORGANISM Clavibacter michiganensis. REFERENCE 1 AUTHORS Li,X. and De Boer,S.H. TITLE Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria JOURNAL Can. J. Microbiol. 41, 925-929 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09762|g836876 BASE COUNT 363 a 348 c 480 g 294 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUCAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGC GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-CU G--------- ------CU-- A(-GAAA-)U -GGUA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C GA-U--U--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----C GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- GUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (C-GA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCANC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -UGC-A--(- GAAA-)-UGU -G-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG NNNGGN--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.RS28 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RS28. str. RS28. ACCESSION No information KEYWORDS No information. SOURCE str. RS28. str. RS28. ORGANISM str. RS28. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31485|g1143129 isolate_name= RS28 BASE COUNT 211 a 211 c 275 g 176 t 3503 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-GGUG---- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--NA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---GAGG--- -AA----ACG 1981 -GCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UCCG |-UC--CUAU 2281 UGU-UUGCCC AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CUUCA A-UGG-GA-U A-CUUGCCCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cub.psychp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Curtobacterium psychrophilum. ACCESSION No information KEYWORDS No information. SOURCE Curtobacterium psychrophilum. ORGANISM Curtobacterium psychrophilum. REFERENCE 1 AUTHORS Suzuki,K. and Sasaki,J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45058|g939826 BASE COUNT 364 a 362 c 458 g 304 t 2888 others ORIGIN 1 .......... .......... .......... .........U AGAGNU(U-G A)U-CCU|-G 61 UCUCAG-GAC -GAAC-NC-- UGUC-GGC-G -UGC-UU--A ACAC-AUACA A-GNC-GCGC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-NCGA- 361 -N-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-C C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGUA-N--C UAAUACC-GG 481 AU-ACG---- ---------- -------N-C CU-U----GG ---AAG-(-- --------NC 541 AU-------- -)-CUU---U CU--U----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--U- G--NUC---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-AC-AC- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|CCCAC CNCC-NC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-U-GA ---CU-GGG( -----UUUU- ---------) CCUG-G--AA 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAAC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAC-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CUC---CUGU G-UAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UCCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-UCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- CG-------- -------GUN -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GCC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -GCU-G--(- GAAA-)-CAG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-U A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA UUGAAAGUCG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rtb.tritic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rathayibacter tritici. ACCESSION No information KEYWORDS No information. SOURCE Rathayibacter tritici. ORGANISM Rathayibacter tritici. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77438|g515048 BASE COUNT 350 a 353 c 483 g 285 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C--C ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-CG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -UCC-A--(- GAAA-)-UGG -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rtb.ratha2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rathayibacter rathayi. ACCESSION No information KEYWORDS No information. SOURCE Rathayibacter rathayi. ORGANISM Rathayibacter rathayi. REFERENCE 1 AUTHORS Suzuki,K. and Sasaki,J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D45062|g939852 BASE COUNT 350 a 351 c 467 g 293 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-UCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C--C ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-UG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UACA|CCAAC CNCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-UAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UCCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-UCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-NC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 NCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 G-C-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACU 1981 -UCC-A--(- GAAA-)-UGG -U-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rtb.rathay 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rathayibacter rathayi. ACCESSION No information KEYWORDS No information. SOURCE Rathayibacter rathayi. ORGANISM Rathayibacter rathayi. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77439|g515047 BASE COUNT 352 a 349 c 482 g 291 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C--C ---CCG-(-- --------GC 541 AU-------- -)-CGG---G UG-UG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CCCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-G-GC ---------( -----UUCG- ---------) --------GC 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -AU-GU-GGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACU 1981 -UCC-A--(- GAAA-)-UGG -U-UGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.helvol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium "helvolum". ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium "helvolum". ORGANISM Brevibacterium "helvolum". REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77440|g516325 BASE COUNT 355 a 341 c 468 g 298 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CGU-G C-CCAU---A -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CC-- G(-GAAA-)C -GGUG-G--C UAAUACU-GG 481 AU-AUC---- ---------- -------U-A AC-A--U--G ---AUC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----U UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GUU---- 661 ----AUGG-- AUC---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA C-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACG 1981 -UUC-A--(- GAAA-)-UGU -U-CGCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAUG GGC-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-UCCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cub.luteum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Curtobacterium luteum. ACCESSION No information KEYWORDS No information. SOURCE Curtobacterium luteum. ORGANISM Curtobacterium luteum. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77437|g515852 DSM 20542 (T) = IFO 12676 = IAM 1632 = NCIMB 11029 = ATCC 15830 BASE COUNT 347 a 343 c 486 g 294 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------UU-- G(-GAAA-)C -GACG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C UA-C--U--G ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- ANNA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-AGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCUG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-CGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cub.citreu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Curtobacterium citreum. ACCESSION No information KEYWORDS No information. SOURCE Curtobacterium citreum. ORGANISM Curtobacterium citreum. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77436|g516344 DSM 20528 (T) = IFO 12677 = IAM 1614 = ATCC 15828 = NCIMB 10702 BASE COUNT 345 a 345 c 487 g 295 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC G--------- ------UU-- G(-GAAA-)C -GACG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C UG-C--C--G ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--AAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -AUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -AU-GU-AGG -GA-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCUG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -GCC-A--(- GAGA-)-UGG -U-UGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9.3 CLLM.FLAVIGENA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9.3 CLLM.FLAVIGENA_GROUP. ORGANISM 2.16.1.9.3 CLLM.FLAVIGENA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.cllul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas cellulans.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas cellulans. ORGANISM Cellulomonas cellulans. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83809|g1051128 BASE COUNT 333 a 353 c 490 g 276 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUU-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-A--C--C ---UUC-(-- --------GC 541 AU-------- -)-GGG---G -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-UC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-UCGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CGGG--- -AA----GCC 1981 -ACC-A--(- GAGA-)-UGG -U-GGUC--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- ---------- ----GA-CA| CUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prm.citrea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Promicromonospora citrea.. ACCESSION No information KEYWORDS No information. SOURCE Promicromonospora citrea. ORGANISM Promicromonospora citrea. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83808|g1051166 BASE COUNT 330 a 349 c 491 g 282 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CA-C--C--U ---GCU-(-- --------GC 541 AU-------- -)-GGU---G -G-GU----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-UC-C CA-UGG-C(- UC-A)A-CUA -UG-G-GCU- 1321 -UGCA-UCGG G-UAC-GGGC A-GACUA-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CAG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------UGG -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------A ---CGAG--- -AA----AGC 1981 -CCC-A--(- GAGA-)-UGG -G-GUUC--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- ---------- ----GA-CA| CUC-GU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CUC 3121 A-CGG-N-CC -AA-CC---- ---------- ---------- -----(---- CCUUGUG--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prm.entphl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Promicromonospora enterophila.. ACCESSION No information KEYWORDS No information. SOURCE Promicromonospora enterophila. ORGANISM Promicromonospora enterophila. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83807 BASE COUNT 343 a 350 c 481 g 276 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUCG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-G AU-G--C--C ---CCU-(-- --------GC 541 AU-------- -)-GGG---G AG-UG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-AC-U CA-AGG-C(- UC-A)A-CCU -NG-A-GCU- 1321 -UGCA-UCGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -UCC-A--(- GAGA-)-UGG -U-UGCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.turba 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas turbata.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas turbata. ORGANISM Cellulomonas turbata. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83806|g1051133 BASE COUNT 343 a 352 c 482 g 274 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -ACUC-C-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-G AU-G--C--C ---CCU-(-- --------GC 541 AU-------- -)-GGG---G AG-UG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-AC-U CA-AGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -UCC-A--(- GAGA-)-UGG -U-UGCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.homin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas hominis str. DMMZ CE40 (CDC group A-3) DSM 9581 (T). ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas hominis str. DMMZ CE40 (CDC group A-3) DSM 9581 (T). ORGANISM Cellulomonas hominis. REFERENCE 1 AUTHORS Funke,G., Pascual Ramos,C. and Collins,M.D. TITLE Identification of some clinical strains of CDC Coryneform group A-3 and group A-4 bacteria are Cellulomonas species and proposal of Cellulomonas hominis for some group A-3 strains JOURNAL J. Clin. Microbiol. 33, 2091-2097 (1995) STANDARD No information COMMENTS Organism information Culture collection: CDC group A-3, DSM 9581 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82598|g806543 Former RDP Sids: Cllm.CE40 isolate_name= DMMZ CE40 (CDC group A-3) NB: former name Cellulomonas sp. BASE COUNT 328 a 358 c 464 g 255 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AACCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-G CC-G--C--U ---CGG-(-- --------GC 541 AU-------- -)-CCG---A UG-CG----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACU 1981 -UCC-A--(- GAGA-)-UGG -U-UGCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGUCCGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CUC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.uda 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas uda.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas uda. ORGANISM Cellulomonas uda. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83801|g1051134 BASE COUNT 345 a 363 c 510 g 282 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AU-U--C--C ---UGC-(-- --------GC 541 AU-------- -)-GUG---G -G-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UA- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUCC--- CC-------- ---------- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUCG U(CGA-A)GG UGGGAC--UG GCGAUUGGGA 3361 CUAA|GUCGU AACAAGGUAG CCGU...... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.gelid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas gelida.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas gelida. ORGANISM Cellulomonas gelida. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83800|g1051132 BASE COUNT 347 a 362 c 510 g 281 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AU-C--C--U ---CAU-(-- --------GC 541 AU-------- -)-GUG---G -G-GG----U GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CA- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-UCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUCG U(CGA-A)GG UGGGAC--UG GCGAUUGGGA 3361 CUAA|GUCGU AACAAGGUAG CCGU...... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.flavi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas flavigena.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas flavigena. ORGANISM Cellulomonas flavigena. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83799|g1051129 BASE COUNT 354 a 366 c 508 g 272 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGGUC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GACCG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G AC-G--C--A ---CGG-(-- --------GC 541 AU-------- -)-CUG---U AG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGU|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C UC-AGG-C(- UC-A)A-CCU -GG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GC--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACG 1981 -UGC-A--(- GAGA-)-UGU -G-CGCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- GCAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUA-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUCG U(CGA-A)GG UGGGAC--UG GCGAUAGGGA 3361 CUAA|GUCGU AACAAGGUAG CCGU...... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.fimi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas fimi.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas fimi. ORGANISM Cellulomonas fimi. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83803|g1051130 BASE COUNT 336 a 358 c 486 g 271 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGACAG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-CG A--------- ------CC-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G AC-G--U--A ---CAG-(-- --------GC 541 AU-------- -)-CUG---U UG-CG----U CU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUNG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C UC-AGG-C(- UC-A)A-CCU -GG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -CUCUG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUCC--- CC-------- ---------- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.biazo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas biazotea.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas biazotea. ORGANISM Cellulomonas biazotea. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83802|g1051126 BASE COUNT 340 a 357 c 485 g 270 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGACAG-GG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-CG A--------- ------CC-- G(-GAAA-)C -GGUC-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G AC-G--U--A ---CAG-(-- --------GC 541 AU-------- -)-CUG---U AA-CG----U CU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C UC-AGG-C(- UC-A)A-CCU -GG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCUG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUCC--- CC-------- ---------- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.clsea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas cellasea.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas cellasea. ORGANISM Cellulomonas cellasea. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83804|g1051127 BASE COUNT 341 a 356 c 486 g 270 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGACGG-GG (--CU----- ---------- ---------- 241 --------UG -)CC-CUGUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CC G--------- ------CG-- G(-GAAA-)C -GGCG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G AC-G--U--A ---CAG-(-- --------GC 541 AU-------- -)-CUG---U UG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C UG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cllm.fermn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Cellulomonas fermentans.. ACCESSION No information KEYWORDS No information. SOURCE Cellulomonas fermentans. ORGANISM Cellulomonas fermentans. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83805 BASE COUNT 345 a 357 c 486 g 265 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUCC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G AC-G--C--A ---CGG-(-- --------GC 541 AU-------- -)-CUG---U AG-CG----U CU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GC-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CCGA--- -AA----ACU 1981 -CGU-G--(- GAGA-)-CAC -G-GGGU--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| GCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.mediev 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Altenburger,P., Kaempfer,P., Makristathis,A., Lubitz,W. and Busse,H.J. TITLE Classification of bacteria isolated from a medieval wall painting JOURNAL J. Biotechnol. 47, 39-52 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94155|g1129122 legacy_attribute= biovar:unnamed bacterium isolated from medieval wall painting BASE COUNT 201 a 219 c 298 g 178 t 3480 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......UUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-G CG-AGG-C(- UU-A)A-CCU -CG---GCC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACA 1981 -UCC-A--(- GAGA-)-UGG -G-UGCC--- CC-------- ---------- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- ---------- ----GG---| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UYG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UY--CUG- 2281 UG--UUGC-C AG-CKG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UY -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCU--- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CY_44 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09057 biol_source= anaerobic waste treatment reactor BASE COUNT 111 a 126 c 158 g 103 t 3878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... ....AAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-G--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCUG--- -AC----GCA 1981 -GCC-A--(- GAGA-)-UGG -U-UGUU--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| CGG-GY-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GCUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGAC-C-GG -UA--CAGAG GGU-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sgb.suarez 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sanguibacter suarezii str. ST26. ACCESSION No information KEYWORDS No information. SOURCE Sanguibacter suarezii str. ST26. ORGANISM Sanguibacter suarezii. REFERENCE 1 AUTHORS Fernandez-Garayzabal,J.F., Dominguez,L., Pascual,C., Jones,D. and Collins,M.D. TITLE Phenotypic and phylogenetic characterization of some unknown coryneform bacteria isolated from bovine blood and milk: description of Sanguibacter gen.nov. JOURNAL Lett. Appl. Microbiol. 20 (2), 69-75 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79452|g1420877 Former RDP Sids: Sgb.inulin isolate_name= ST26 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 349 a 355 c 490 g 297 t 2885 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G AU-G--C--G ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-UG----U CU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUC---- 661 ----AAGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-AC-U CA-AGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--AC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-CGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----UCA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCG--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK143 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK143.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK143. ORGANISM clone SMK143. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78634|g509476 BASE COUNT 92 a 88 c 131 g 78 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .........A UCUUGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGG GUG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--G-A- ---GCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-CUC C(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK5 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK5.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK5. ORGANISM clone SMK5. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78650|g509491 BASE COUNT 89 a 86 c 132 g 78 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ...GU----G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UCUUGAG-AG (--CU----- ---------- ---------- 241 --------UG -)NU-CUUGG GUG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --U|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--G-A- ---GCC-(-- --------GC 541 AU-------- -)-GGU---U UC-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUCUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----G.... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trb.tumesn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Terrabacter tumescens. ACCESSION No information KEYWORDS No information. SOURCE Terrabacter tumescens. ORGANISM Terrabacter tumescens. REFERENCE 1 AUTHORS Collins,M.D., Dorsch,M. and Stackebrandt,E. TITLE Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov JOURNAL Int. J. Syst. Bacteriol. 39, 1-6 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53215 NCIMB 8914 (T) = NCTC 4216 = ATCC 6947 BASE COUNT 322 a 334 c 459 g 258 t 3003 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ..GUC-GAAC 121 GGUGA-C--- -GAU------ ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU C--|------ UGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--NCU-G C-CCCA---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-C--A-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---C AU-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-NG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -NU-GGGC|G UAAA-GAGC- UNG-NAG-GU -G|-GU-UN- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-C CG-AGG-C(- UC-A)A-CCU -CG-G-ACU- 1321 -NGCN-GUGG G-UAC-GGGC A-GACUN-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--AU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -UC-UNA--- ---------- 1681 -(UUC-CN)- ---------- ---------- -C-------- -------GAG -AUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UNG ACN-UA|-C- ---------A ---CCGG--- -AA----UCA 1981 -CUC-A--(- GAGA-)-UGG -G-UNCG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- N-UNG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Trb.tumes2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Terrabacter tumescens.. ACCESSION No information KEYWORDS No information. SOURCE Terrabacter tumescens. ORGANISM Terrabacter tumescens. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83812|g1051168 BASE COUNT 346 a 352 c 481 g 282 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GGUGA-C--- -GAU------ ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------GU CUG|AUC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-C--A-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---C AU-GG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-C CG-AGG-C(- UC-A)A-CCU -CG-G-ACU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -UC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -AUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----UCA 1981 -CUC-A--(- GAGA-)-UGG -G-UGCG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9.4 ARTHROBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9.4 ARTHROBACTER_GROUP. ORGANISM 2.16.1.9.4 ARTHROBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.plychr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter polychromogenes str. 2568 DSM 20136 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter polychromogenes str. 2568 DSM 20136 (T). ORGANISM Arthrobacter polychromogenes. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20136 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80741|g639808 DSM 20136 (T) = NCIMB 10267 = ATCC 15216 isolate_name= 2568 BASE COUNT 342 a 344 c 489 g 297 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-G G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----U--G- U--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AUA 1981 -CCU-G--(- GAGA-)-CAG -G-UGCC--- CC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GC-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0686 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0686. str. B0686. ACCESSION No information KEYWORDS No information. SOURCE str. B0686. str. B0686. ORGANISM str. B0686. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12225|g529304 geog_source= Savannah R. near Aiken,SC, 259 m deep biol_source= Middendorf aquifer isolate_name= B0686 BASE COUNT 196 a 195 c 270 g 175 t 3540 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... CGCGGUA-A) U-A-C-GUAG |-GGCN-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GANC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AUA 1981 -CCU-G--(- GAGA-)-CAG -G-UGCC--- CC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GC-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-N-CCG --GG(-NU-C AA)-CUC-G- -GAGG-A-NG 2761 G-UG-GGG-N CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 N-UCA-CG-C AUN--CNACA AUGAC-C-GG -UA--CANAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U NCCAA-ANAA -CC-G-GUC- UCAGNUNGGA 2941 U-UGGGNUC- (UGCNAC-U- C)-GACCCCA -UGAAUU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ANCGAC)-A CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.oxydan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter oxydans. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter oxydans. ORGANISM Arthrobacter oxydans. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83408|g1051106 Former RDP Sids: Arb.oxidan DSM 20119 (T) = NCIMB 9333 = IMET 10684 = ATCC 14358 NB: former name Arthrobacter oxydans BASE COUNT 344 a 348 c 495 g 299 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----U--G- U-GGUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AUA 1981 -CCU-G--(- GAGA-)-CAG -GGUGCC--- CC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GC-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.RS4 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RS4. str. RS4. ACCESSION No information KEYWORDS No information. SOURCE str. RS4. str. RS4. ORGANISM str. RS4. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31487|g1143130 isolate_name= RS4 BASE COUNT 203 a 206 c 276 g 181 t 3510 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 CAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 N-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGA 1981 -CCU-A--(- GAAA-)-UAG -G-UGCC--- CC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GC-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- CUU-AA.... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0672 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0672. str. B0672. ACCESSION No information KEYWORDS No information. SOURCE str. B0672. str. B0672. ORGANISM str. B0672. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12224|g529303 geog_source= Savannah R. near Aiken,SC, 259 m deep biol_source= Middendorf aquifer isolate_name= B0672 BASE COUNT 196 a 198 c 273 g 176 t 3533 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UNCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|N-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGA 1981 -UCU-G--(- GAAA-)-CAG -G-UCCC--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUUC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCCC-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UNCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0620 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0620. str. B0620. ACCESSION No information KEYWORDS No information. SOURCE str. B0620. str. B0620. ORGANISM str. B0620. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12221|g529300 geog_source= Savannah R. near near Aiken,SC, 244 m deep biol_source= Middendorf aquifer isolate_name= B0620 BASE COUNT 199 a 200 c 277 g 175 t 3525 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ..CGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUN---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UNCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UCCC--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| CCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0603 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0603. str. B0603. ACCESSION No information KEYWORDS No information. SOURCE str. B0603. str. B0603. ORGANISM str. B0603. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12219|g529298 geog_source= Savannah R. near near Aiken,SC, 244 m deep biol_source= Middendorf aquifer isolate_name= B0603 BASE COUNT 194 a 200 c 272 g 175 t 3535 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ..CGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUN---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UNCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 NC-GNA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 NAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CNC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UCCCC-- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| CCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUUC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UNCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0612 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0612. str. B0612. ACCESSION No information KEYWORDS No information. SOURCE str. B0612. str. B0612. ORGANISM str. B0612. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12220|g529299 geog_source= Savannah R. near near Aiken,SC, 244 m deep biol_source= Middendorf aquifer isolate_name= B0612 BASE COUNT 195 a 199 c 277 g 177 t 3528 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UNCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UCCC--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| CCG-GN-UUA |---C|A--G 2161 GU-GG-UGCA UG|N-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-NCCNC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CNA- 2281 UG--UUUC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCCC-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGNAAC)-G UUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ren.salmo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Renibacterium salmoninarum str. K272/88 (Icelandic isolate). ACCESSION No information KEYWORDS No information. SOURCE Renibacterium salmoninarum str. K272/88 (Icelandic isolate). ORGANISM Renibacterium salmoninarum. REFERENCE 1 AUTHORS Fridjonsson,O.H. TITLE A nested RT-PCR assay for Renibacterium salmonarium,the causative agent of bacterial kidney disease in salmonid fish JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76977|g440577 isolate_name= K272/88 (Icelandic isolate) BASE COUNT 247 a 243 c 336 g 227 t 3323 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- CA-AG-A-CA --UCA-U--( -----UUUU- ---------) --GU-GG-UG 1081 ---------- -------U-- U-GA-GGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -UAG-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-UAAACUC -AAA-GNAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---UUAG--- -AA----AA- 1981 ---C-A--(- GAAA-)-UGU -A-CUCC--- ---------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- -----G---| UUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-C------ -CG------- ---------- ---U(---UA ---UGG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAGGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUCCAAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A A-CC-GU-CG A-AGGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ren.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Renibacterium salmoninarum str. Les-1-74 ATCC 33209 (T). ACCESSION No information KEYWORDS No information. SOURCE Renibacterium salmoninarum str. Les-1-74 ATCC 33209 (T). ORGANISM Renibacterium salmoninarum. REFERENCE 1 AUTHORS Gutenberger,S.K., Giovannoni,S.J., Field,K.G., Fryer,J.L. and Rohovec,J.S. TITLE A phylogenetic comparison of the 16SrRNA sequence of the fish pathogen, Renibacterium salmoninarum, to Gram-positive bacteria JOURNAL FEMS Microbiol. Lett. 77, 151-156 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33209 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X51601 ATCC 33209 (T) = NCIMB 2235 isolate_name= Les-1-74 BASE COUNT 337 a 322 c 477 g 315 t 2925 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUUUACGG AGAGUU(U-N A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCGG-UC (--GU----- ---------- ---------- 241 --------UG -)CG-CCGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CU-A--U--C ---ACC-(-- --------GC 541 AU-------- -)-GGU---G UG-UA----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UAACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- CA-AG-A-CA --UCA-U--( -----UUUU- ---------) --GU-GG-UG 1081 ---------- -------U-- U-GA-GGGU- N-CUU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC GGCGGUA-A) U-G-C-GUAG |-GGUG-C-- 1201 AAG-CGUUAU NC-GGAAUUA -UU-GGGC|G UAAN-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-HAAACUC -AAA-GNAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---UUAG--- -AA----AAG 1981 -UGC-A--(- GAAA-)-UGU -A-CUCC--- ---------- ---CC----- --(MU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- -----G---| UUG-GU-UCA |---C|A--G 2161 GU-GG-HGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-US-G |-UU--CUA- 2281 UG--UUGC-C AG-C------ -CG------- ---------- ---U(---UA ---UGG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-N-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGYADC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-HNG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -WUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAWG-G-G A-AC-GU-CG A-UGGU-NGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B686 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B686. str. B686. ACCESSION No information KEYWORDS No information. SOURCE str. B686. str. B686. ORGANISM str. B686. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13137|g495621 isolate_name= B686 BASE COUNT 150 a 156 c 195 g 127 t 3748 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .AANNA-AG- C-A---GU-G 901 GAA-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G U-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-UG-UU 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-N CCUCC-GUG( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... ...UCAGAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUNN 1801 GGG-C---(G CNA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- NA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCCCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGNAGG-G-A G-CU-GU-CG A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B755 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B755. str. B755. ACCESSION No information KEYWORDS No information. SOURCE str. B755. str. B755. ORGANISM str. B755. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13145|g495624 isolate_name= B755 BASE COUNT 154 a 165 c 216 g 135 t 3706 others ORIGIN 1 ---------- ---------- ---------- ---------- ------(--- -)-----|-- 61 ---------- ---------- ---------- ---------- ---------- ---------- 121 ---------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---------- 361 ---------- ---------- ---------- ---------- ---------- ---------- 421 ---------- ---AUAGAGA GAGCAGUG-- U(-GAAA-)A -GGCG-G--- ---UUUC-GG 481 CU-------- ---------- ---------- ---------- ---GUC-(-- --------AC 541 UA-------- -)-CAG---- ---------- ---GAUAG-- ---GC----- ---------- 601 --(------- --CCGCG--- ---)------ ---------| -----G-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .AA-AC-NG- C-N---GU-G 901 GGN-NAUNUU G-CACUAU-- GG-GC-(GGA A)-GCC-UUA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UU 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-N CCUAC-GUG( U......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... ......CGG- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... ........UC -A-AAUC-AU CAU---CC-C CUUAU-G-UC -UU--GG-C- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCCCCC- GUC-AAG--- --NCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-A-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGNAGG-G-A G-CU-GU-CG A-AGGGUGGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0723 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0723. str. B0723. ACCESSION No information KEYWORDS No information. SOURCE str. B0723. str. B0723. ORGANISM str. B0723. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12228|g529307 geog_source= Savannah R. near Aiken,SC, 265 m deep biol_source= Middendorf aquifer isolate_name= B0723 BASE COUNT 196 a 196 c 269 g 180 t 3535 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ....GUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUN---CCGU G-AAA-GU-C CG-GGG-C(- UU-A)A-CUC -CG-G-AUC- 1321 -UNCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG--A- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|N-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCAG--- -AC----CGG 1981 -GCU-G--(- GAAA-)-CAG -U-UCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ----GG---| UUG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|N-UUG-- UCG-UCA|-N C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-NCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUUC-C AA-CGG---- ---------- ---------- ---G(---UA ---GUN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAC-AAAN -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.globif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter globiformis str. 168 DSM 20124 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter globiformis str. 168 DSM 20124 (T). ORGANISM Arthrobacter globiformis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 20124 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23411 DSM 20124 (T) = NCIMB 8907 = ATCC 8010 isolate_name= 168 BASE COUNT 347 a 364 c 509 g 311 t 2845 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GUUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.globi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter globiformis str. 168 DSM 20124 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter globiformis str. 168 DSM 20124 (T). ORGANISM Arthrobacter globiformis. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20124 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80736|g639803 DSM 20124 (T) = NCIMB 8907 = ATCC 8010 isolate_name= 168 BASE COUNT 332 a 349 c 491 g 292 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GUUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.H61 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. H61. str. H61. ACCESSION No information KEYWORDS No information. SOURCE str. H61. str. H61. ORGANISM str. H61. REFERENCE 1 AUTHORS Hattori,T. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D28793|g469497 isolate_name= H61 BASE COUNT 97 a 89 c 123 g 81 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .UG|GAU--U AGUG-CCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GCA---- ---------- 601 --(------- ---UUAU--- ---)------ ---------| ----UG--U- G--GAU---- 661 ----UUGG-- AUG---G-|A CUCAC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--ACCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUC--G-U CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CA-GAA-- GU-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.pascns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter pascens str. B89 DSM 20545 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter pascens str. B89 DSM 20545 (T). ORGANISM Arthrobacter pascens. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20545 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80740|g639807 DSM 20545 (T) = NCIMB 8910 = CCM 1653 = ATCC 13346 isolate_name= B89 BASE COUNT 337 a 351 c 492 g 294 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.ramosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter ramosus str. I Gm 25 DSM 20546 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter ramosus str. I Gm 25 DSM 20546 (T). ORGANISM Arthrobacter ramosus. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20546 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80742|g639809 DSM 20546 (T) = NCIMB 9066 = CCM 1646 = ATCC 13727 isolate_name= I Gm 25 BASE COUNT 337 a 351 c 492 g 293 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S7. str. S7. ACCESSION No information KEYWORDS No information. SOURCE str. S7. str. S7. ORGANISM str. S7. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31484|g1143128 isolate_name= S7 BASE COUNT 200 a 204 c 292 g 185 t 3495 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......UNAG |-GGCG---- 1201 AAN-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UC-A)A-CCC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGNC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GN--A 1621 AAC-G-UUGG N--CA-CU-- -------A|G -AU-GU-GGG -GG-UUG--- ---------- 1681 -(GGA-A-)C UAGAUGUGGG GGACAUUCCA -C-------- -------GUU -UUCCG-CGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------G ---CCGG--- -AU----CGC 1981 -CGC-A--(- GAAA-)-UGU -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGNC- 2821 U-UCA-CG-C AUG--CUACA AUGGN-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-UGGUG- AAUAC-GUU- CCC-GGG-NC UAGUA----C 3061 ACANCGCC.. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.agilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter agilis str. W.O. 219 DSM 20550 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter agilis str. W.O. 219 DSM 20550 (T). ORGANISM Arthrobacter agilis. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20550 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80748|g639977 Former RDP Sids: Mic.agilis DSM 20550 (T) = NCTC 7509 = NCDO 983 = CCM 2390 = ATCC 966 isolate_name= W.O. 219 NB: former name Micrococcus agilis BASE COUNT 337 a 347 c 495 g 303 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CA (--CU----- ---------- ---------- 241 --------UG -)UG-GGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CU-U--C--U ---GGC-(-- --------GC 541 AU-------- -)-GCC---A UG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C-CU --GUC-U--( ------UUU- ---------) --GG-GU-GG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UU-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----UGA 1981 -UGC-A--(- GAGA-)-UGU -G-UCAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| CCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.citrus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter citreus str. C7 DSM 20133 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter citreus str. C7 DSM 20133 (T). ORGANISM Arthrobacter citreus. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20133 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80737|g639801 DSM 20133 (T) = NCIMB 8915 = ATCC 11624 isolate_name= C7 BASE COUNT 349 a 355 c 486 g 285 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACUUUUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAAAA UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GG-A--C-C- ---ACC-(-- --------GC 541 AU-------- -)-GGC---- GG-UC----C GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUGAU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GGUUG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGG 1981 -CCU-G--(- GAAA-)-CAG -G-UCCC--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GU-------- ----GG---| CCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGU-- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.ureafc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter ureafaciens str. NC DSM 20126 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter ureafaciens str. NC DSM 20126 (T). ORGANISM Arthrobacter ureafaciens. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20126 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80744|g639810 (bases 1 to 1470) DSM 20126 (T) = NCIMB 7811 = CCM 1644 = ATCC 7562 isolate_name= NC BASE COUNT 330 a 351 c 490 g 295 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-UC-- UGAC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CG-CCGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-N C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GN) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C-CC --UC-----( ------UUU- ---------) -----GG-GG 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG N--GA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UGCC--- CC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GC-------- ----GG---| CCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)NCUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAC--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-G C-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.nicvor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter nicotinovorans. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter nicotinovorans. ORGANISM Arthrobacter nicotinovorans. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80743|g639805 DSM 420 (T) = JCM 3874 BASE COUNT 336 a 350 c 490 g 291 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAAN-CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UGCC--- CC-------- ---G------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- -C-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-G C-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.hstdnl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter histidinolovorans. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter histidinolovorans. ORGANISM Arthrobacter histidinolovorans. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83406|g1051104 BASE COUNT 338 a 356 c 491 g 293 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GANC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-AG (--CU----- ---------- ---------- 241 --------UN -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GAU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UC-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUU---CUGU G-AAA-GA-C CG-GGG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -UCCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCCA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UGCC--- CC-------- ---G------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- -C-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-G C-C--GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp3466 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. 3466.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. 3466.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS isolate_name= 3466.Rhizobium isolate BASE COUNT 65 a 66 c 95 g 62 t 4088 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- ---------A CU-G--A-UC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GU-UG----G U--GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UAC.)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.ilicis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter ilicis. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter ilicis. ORGANISM Arthrobacter ilicis. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83407|g1051105 BASE COUNT 340 a 357 c 495 g 294 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GAU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-U--C-U- ---GGC-(-- --------GC 541 AU-------- -)-GUC---A UG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----GUAA- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G CGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCCA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -UA----AUA 1981 -CCU-G--(- GAAA-)-CAG -G-UGCC--- CC-------- ---G------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- -U-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-G C-C--GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.auresc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter aurescens. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter aurescens. ORGANISM Arthrobacter aurescens. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83405|g1051103 BASE COUNT 342 a 351 c 492 g 295 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|GAU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--C-U- ---GGC-(-- --------GC 541 AU-------- -)-GUC---A UG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUU---CUGU G-AAA-GA-C CG-GGG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-A- ---------A ---CCGG--- -AA----AGA 1981 -CCU-G--(- GAAA-)-CAG -G-UGCC--- CC-------- ---G------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- -C-------- ----GG---| UCG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-A-G C-C--GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.spS2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter sp. str. S2. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter sp. str. S2. ORGANISM Arthrobacter sp. REFERENCE 1 AUTHORS Carter,J.P., Richardson,D.J., Spiro,S. and Hsiao,Y. TITLE The enumeration and characterisation of bacteria from three soils and a freshwater sediment that are capable of aerobic nitrate respiration JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48283|g853717 isolate_name= S2 BASE COUNT 69 a 71 c 110 g 49 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... ...GCC-(-- --------GC 541 AU-------- -)-GGC--CA GG-UG----G UG-GCAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- C--GGU---- 661 ---BGGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGG.... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.spH1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter sp. str. H1. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter sp. str. H1. ORGANISM Arthrobacter sp. REFERENCE 1 AUTHORS Weller,R. and Mitchell,J. TITLE Intrageneric structure of Streptococcus JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z11494 isolate_name= H1 BASE COUNT 204 a 202 c 280 g 184 t 3506 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-NCGA CGCN-GN-NN 961 G-A-GG-G-A U-GAC--N-G -C(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-N--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUC-A) U-G-N-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GU-C CG-GGG-C(- UU-A)A-CCC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-CG- AU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- N-GGGAGUAC 1801 NGC-C---(G CAA)---S-S -U-AAAACUC -AAA-NNAAU UG-AC..... ......C--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CUCG--- -AU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UURC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUN-N- -NNNN-A-AG 2761 G-UN-AGG-A CN-ACN--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--NNNC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-M-C- MA-UGA-C(C 2881 -UGU)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mic.luteus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micrococcus luteus str. Hucker S66 ATCC 381. ACCESSION No information KEYWORDS No information. SOURCE Micrococcus luteus str. Hucker S66 ATCC 381. ORGANISM Micrococcus luteus. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 381 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M38242 isolate_name= Hucker S66 BASE COUNT 344 a 355 c 488 g 305 t 2884 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUUUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGNN G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CG-U--C-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CUG---UCGU G-AAA-GU-Y CG-GGG-C(- UU-A)A-CCC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-NGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-NU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CUCG--- -AU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUU--- CC-------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GN---| CGG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GN(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-NGG ACC-AG-CG- AUU-GGGA-C 3301 U---AAG... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S25 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S25. str. S25. ACCESSION No information KEYWORDS No information. SOURCE str. S25. str. S25. ORGANISM str. S25. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31483|g1143127 isolate_name= S25 BASE COUNT 179 a 185 c 264 g 179 t 3569 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 ....CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GU-C CG-GGG-C(- UN-A)A-CCC -CG-G-AUC- 1321 -UGCN-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UA G-UA-GNGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCNG-CGC 1741 CG--GA---- --GA-(UAA- ---C)G-CA- UUAN-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -ANA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUACUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC ANG-GUGUUG ACA-UG|-U- ---------U ---CCCG--- -AU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-AUUU--- CC-------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| CGG-NU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUN A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 C-GA-CU-C- A-UGG-UA-G A-NU-G-CCG --AG(-GU-C AA)-CUC-G- -GGGG-A-AG 2761 G-UG-AGG-A CG-ACG--UN -A-ACUC-AN CAU-G-CC-C CUUUU-G-UC -UU--GNAN- 2821 U-NCA-NG-N AUA--NUACA NUGGA-C-AU -UA--NANUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUN- ---------- GA-GCUAA-U CCCAA-NAGG -CN-N-AUC- UCNGUUCGGN 2941 U-UGNGGUN- (UUNANC-N- C)-GAUCCCA -UGNGGN-CG -GANU-CGU- -UAGUA-AUC 3001 NC-AGA-(UC -AGCAGC)-G GUG-NGNAG- NNUCC-GUC- CCC-GGG-AC UAG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mic.lylae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micrococcus lylae str. JL 178 DSM 20315 (T). ACCESSION No information KEYWORDS No information. SOURCE Micrococcus lylae str. JL 178 DSM 20315 (T). ORGANISM Micrococcus lylae. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20315 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80750|g639988 DSM 20315 (T) = CCM 2693 = ATCC 27566 isolate_name= JL 178 BASE COUNT 335 a 348 c 492 g 297 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CA-U--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---AUU---- ---)------ ---------| -----U--C- G--GUC---- 661 ----UUGG-- A---UGG-|A CUCGC----- -GG|----CC C--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-GGG-C(- UU-A)A-CUC -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUUG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CUCG--- -UU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUU--- CC-------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S23 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S23. str. S23. ACCESSION No information KEYWORDS No information. SOURCE str. S23. str. S23. ORGANISM str. S23. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31496|g1143133 isolate_name= S23 BASE COUNT 196 a 194 c 271 g 183 t 3532 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......UNAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CUU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGNC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GNAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAN- N-CC-GU--A 1621 AAC-G-UUGG G--NA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CUAG--- -AU----CGC 1981 -CAU-A--(- GAAA-)-UAU -G-GUUUC-- CC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- GG-------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GNG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GA(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GNG-A CG-ACG--UC -A-ANUC-AU CAU-G-CC-C CUUNU-G-UC -UU--GGNC- 2821 U-UCA-CG-C AUN--CUACA NUGGN-C-AG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-CAAG -CC-G-NUC- UCAGUUCGGA 2941 U-UGNGGUC- (UGCAAC-U- C)-GACCCCA -UGANGU-CG -GAGU-CGC- -UAGUA-AUC 3001 NC-AGA-(UC -AGNAGC)-G GUG-UGGUG- AAUAC-GUU- CCC-NGG-NC UAGAA----C 3061 ACA....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S36 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S36. str. S36. ACCESSION No information KEYWORDS No information. SOURCE str. S36. str. S36. ORGANISM str. S36. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31499|g1143134 isolate_name= S36 BASE COUNT 199 a 199 c 271 g 185 t 3522 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CUU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGNC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GNAG- -GUCUCUG-- ---------- ---------- ---------G 1501 NCA--UC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GA--A 1621 AAC-G-UUGG A--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CUAG--- -AU----CGC 1981 -CAU-A--(- GAAA-)-UAU -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- U-)------- GG-------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GCG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GN(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GNG-A CG-ACG--UC -A-ANUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGAC- 2821 U-UCA-CG-C AUN--CUACA NUGGN-C-NG -UA--CANUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-CAAG -CC-G-NUC- UCAGUUCGGA 2941 U-UGNGGUC- (UNCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGAAGC)-G GUG-UGGUG- AAUAC-GUU- CCC-GGG-UC UAGNA----C 3061 ACACCGAC.. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.sulfur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter sulfureus. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter sulfureus. ORGANISM Arthrobacter sulfureus. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83409|g1051107 BASE COUNT 344 a 351 c 486 g 296 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAGAU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUGC--- ---------- -------A-C CG-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GUC---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---UCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CCU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCAG--- -AC----CGC 1981 -CGU-G--(- GAAA-)-CAC -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- -----G---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G AUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.uratox 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter uratoxydans. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter uratoxydans. ORGANISM Arthrobacter uratoxydans. REFERENCE 1 AUTHORS Koch,C., Schumann,P. and Stackebrandt,E. TITLE Reclassification of Micrococcus agilis (Ali-Cohen 1889) to the genus Arthrobacter as Arthrobacter agilis comb. nov. and emendation of the genus Arthrobacter JOURNAL Int. J. Syst. Bacteriol. 45, 837-839 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83410|g1051110 BASE COUNT 347 a 354 c 485 g 297 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 AAUCAG-GAU -GAAC-GC-- UGAC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCUAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-NCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-C-U 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CCU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CCAG--- -AC----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGAACGGA 2941 U-UGGGGUC- (UGCAAC-A- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCAC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.nicnae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter nicotianae str. 94 DSM 20123 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter nicotianae str. 94 DSM 20123 (T). ORGANISM Arthrobacter nicotianae. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20123 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80739|g639804 DSM 20123 (T) = NCIMB 9548 = CCM 1648 = ATCC 15236 isolate_name= 94 BASE COUNT 336 a 351 c 492 g 292 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CCU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGNC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCAG--- -AC----CGC 1981 -UCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.protph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter protophormiae str. M-570 DSM 20168 (T). ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter protophormiae str. M-570 DSM 20168 (T). ORGANISM Arthrobacter protophormiae. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20168 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80745|g639806 DSM 20168 (T) = CCEB 282 = ATCC 19271 isolate_name= M-570 BASE COUNT 335 a 349 c 491 g 298 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-G- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CCU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----AU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CCAG--- -AC----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C --)------- GG-------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -CCUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pX1 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pX1.. ACCESSION No information KEYWORDS No information. SOURCE clone pX1. ORGANISM clone pX1. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27860|g903931 BASE COUNT 86 a 100 c 124 g 84 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .GAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAN)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -CCUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGGG-GGA G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON14 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON14.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON14. ORGANISM clone pCON14. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27844|g903915 BASE COUNT 104 a 107 c 146 g 101 t 3918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGCG-C-- 1201 AAS-SGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---UCGU G-AAA-GU-C CG-AGG-C(- UC-A)A-CCU -CG-G-AUC- 1321 -UGCG-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCS(-G UGAAA)-UGC -GC-AGAU-A UC--GGAGG- AACA-CCGA- 1441 -U-U-GC(-G AA-G)GCAG- -GUCUCU... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)G-UG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -GA-CCA--- ---------- ---------- -----(---- -CCUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGNNN-G-A G-UC-GU-CS A-AGGU-GGN ACU-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.pCON17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone pCON17.. ACCESSION No information KEYWORDS No information. SOURCE clone pCON17. ORGANISM clone pCON17. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S .M., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27845|g903916 BASE COUNT 73 a 79 c 97 g 68 t 4059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-C- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -CCUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGAGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Nk.halobia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nesterenkonia halobia str. 28-3 DSM 20541 (T). ACCESSION No information KEYWORDS No information. SOURCE Nesterenkonia halobia str. 28-3 DSM 20541 (T). ORGANISM Nesterenkonia halobia. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20541 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80747|g639979 Former RDP Sids: Mic.halobi DSM 20541 (T) = CCM 2591 = ATCC 21727 isolate_name= 28-3 NB: former name Micrococcus halobius BASE COUNT 322 a 343 c 484 g 302 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UGCCGGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUGG CGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AUC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-G--U--C ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UG-CU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUUA-- ---)------ ---------| -----U--C- G--GUC---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----UUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 G-CC-ACG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUG- 1321 -UGCA-GUGG G-UAC-GGGU A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C --)------- GG-------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CUC 3121 A-CGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-G-- G-UU-GU-CG A-AGGU-GGG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.atcyan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter atrocyaneus. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter atrocyaneus. ORGANISM Arthrobacter atrocyaneus. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80746|g639799 DSM 20127 (T) = NCIMB 9220 = CCM 1645 = ATCC 13752 BASE COUNT 317 a 368 c 509 g 278 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --CUUGU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----UUGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GG-CA 1021 --GG-GAA-- CA-AG-C-CC ---------( -----CUUG- ---------) --------GG 1081 ---------- -------G-- U-GA-GGGU- A-CCU-G-CG G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUG-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AC----CGU 1981 -CCC-A--(- GAGA-)-UGG -G-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C --)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B0629 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B0629. str. B0629. ACCESSION No information KEYWORDS No information. SOURCE str. B0629. str. B0629. ORGANISM str. B0629. REFERENCE 1 AUTHORS Reeves,R.H., Reeves,J.Y. and Balkwill,D.L. TITLE Strategies for phylogenetic characterization of subsurface bacteria JOURNAL J. Microbiol. Methods 21, 235-251 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12223|g529302 geog_source= Savannah R. near near Aiken,SC, 244 m deep biol_source= Middendorf aquifer isolate_name= B0629 BASE COUNT 185 a 207 c 278 g 166 t 3540 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ....GUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UNCA-GUGG G-UAC-GGGC A-GGCUG-GA GUU-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AC----CGU 1981 -CCC-A--(- GAGA-)-UGG -G-GCUU--- C--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- ----GG---| CCG-GU-NCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-N C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GN)-CCCGC AN-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUNC-C AG-CAC---- ---------- ---------- ----(---AU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-N-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUN--CUACA AUGGC-C-GG -NA--CAAAG GGU-U-N-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UNCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Arb.crystl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arthrobacter crystallopoietes. ACCESSION No information KEYWORDS No information. SOURCE Arthrobacter crystallopoietes. ORGANISM Arthrobacter crystallopoietes. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80738|g639802 DSM 20117 (T) = NCIMB 9499 = CCM 2386 = ATCC 15481 BASE COUNT 337 a 354 c 490 g 289 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUCCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GUU---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----CGC 1981 -CGC-A--(- GAAA-)-UGC -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C --)------- GG-------- ----GG---| CUG-GU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stt.muclag 4376 bp RNA RNA 02-JUL-1998 DEFINITION Stomatococcus mucilaginosus. ACCESSION No information KEYWORDS No information. SOURCE Stomatococcus mucilaginosus. ORGANISM Stomatococcus mucilaginosus. REFERENCE 1 AUTHORS Stackebrandt,E., Koch,C., Gvozdiak,O. and Schumann,P. TITLE Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend . JOURNAL Int. J. Syst. Bacteriol. 45, 682-692 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87758 DSM 20746 (T) = NCTC 10663 = CCM 2417 = ATCC 25296 BASE COUNT 342 a 341 c 483 g 301 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AACCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-A C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--U--C ---UCC-(-- --------GC 541 AU-------- -)-GGG---G UG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- -GUUAUGUA- ---)------ ---------| -----G--U- G--GUU---- 661 ----AUAG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UGUU-AG-CA 1021 --GG-GAA-- GA-AG-A--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-CA G-AG--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GG-C CG-GGG-C(- UU-A)A-CCC -CG-UGUAU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CUGG--- -AC----CGC 1981 -AUC-A--(- GAGA-)-UGG -U-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CCU--- ---------- ---------- -----(---- -CUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rot.dentoc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rothia dentocariosa. ACCESSION No information KEYWORDS No information. SOURCE Rothia dentocariosa. ORGANISM Rothia dentocariosa. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59055 BASE COUNT 336 a 329 c 497 g 306 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUGUAACGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UGA--CCU-A C-CUUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--U--C ---UCC-(-- --------GC 541 AU-------- -)-GGG---G UG-UU----G NU-GGAAA-- ---GC----- ---------- 601 --(------- -GUUAUGGA- ---)------ ---------| -----G--U- G--GUU---- 661 ----UUAG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----NG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|Y-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UGUU-AG-CA 1021 --UC-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-CA G-AG--AAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GG-C UG-GGG-C(- UU-A)A-CCC -UG-G-UUU- 1321 -UGCA-GUGG G-UAC-GGGC U-AACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-U- ---------A ---CUGG--- -AC----UGC 1981 -GUC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CUG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGN-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUGGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-NG- AUN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kc.rosea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kocuria rosea. ACCESSION No information KEYWORDS No information. SOURCE Kocuria rosea. ORGANISM Kocuria rosea. REFERENCE 1 AUTHORS Stackebrandt,E., Koch,C., Gvozdiak,O. and Schumann,P. TITLE Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend. JOURNAL Int. J. Syst. Bacteriol. 45, 682-692 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87756|g1051162 Former RDP Sids: Mic.roseus DSM 20447 (T) = NCTC 7523 = IMET 11363 = CCM 679 = ATCC 186 NB: former name Microccus roseus BASE COUNT 334 a 351 c 497 g 299 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGCG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-ACU---- ---------- -------A-C CU-C--U-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- --GUUUUA-- ---)------ ---------| -----C--U- G--GUU---- 661 ----UUGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|-C- ---------A ---CCGG--- -AC----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C --)------- GG-------- ----GG---| CUG-GU-GGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kc.varians 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kocuria varians. ACCESSION No information KEYWORDS No information. SOURCE Kocuria varians. ORGANISM Kocuria varians. REFERENCE 1 AUTHORS Stackebrandt,E., Koch,C., Gvozdiak,O. and Schumann,P. TITLE Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend . JOURNAL Int. J. Syst. Bacteriol. 45, 682-692 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87754|g1051165 Former RDP Sids: Mic.varian DSM 20033 (T) = NCTC 7564 = NCDO 777 = IMET 11364 = CCM 884 = ATCC 15306 NB: former name Micrococcus varians BASE COUNT 338 a 349 c 495 g 299 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-- 61 ---------- ------GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AACUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGGG UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCUU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C AU-G--U-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GG-CG----U GU-GGAAA-- ---GG----- ---------- 601 --(------- --GUUUUA-- ---)------ ---------| -----C--U- G--GUU---- 661 ----UUGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GA) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUU---CUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCC -CG-G-GUG- 1321 -UACA-GUGG G-UAC-GGGC A-GACUU-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AC----CGG 1981 -UCC-A--(- GAGA-)-UGG ----AUC--- UU-------- -CCCC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ----GG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGUGGUC- (UGCAAC-U- C)-GACCACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kc.kristin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kocuria kristinae str. PM 129 DSM 20032 (T). ACCESSION No information KEYWORDS No information. SOURCE Kocuria kristinae str. PM 129 DSM 20032 (T). ORGANISM Kocuria kristinae. REFERENCE 1 AUTHORS Koch,C., Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA studies on members of Arthrobacter and Micrococcus: an aid for their taxonomic restructuring JOURNAL FEMS Microbiol. Lett. 123, 167-172 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20032 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80749|g639987 Former RDP Sids: Mic.kristn DSM 20032 (T) = CCM 2690 = ATCC 27570 isolate_name= PM 129 NB: former name Micrococcus kristinae BASE COUNT 332 a 347 c 496 g 300 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AGCCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGG UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UGA--CCU-G C-CUUU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-GCG---- ---------- -------A-C UA-C--U-G- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- C---U----G GU-GGAAA-- ---GG----- ---------- 601 --(------- -GUUAUGUA- ---)------ ---------| -----C--U- G--GUC---- 661 ----UUAG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 C-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GGAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GUG- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CA G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGU 1981 -UCC-A--(- GAGA-)-UGG ----UUC--- UU-------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- UG-------- ----GG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGAGGG-G-U --UG-UG-C- A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.GH443 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. GH443. str. GH443. ACCESSION No information KEYWORDS No information. SOURCE str. GH443. str. GH443. ORGANISM str. GH443. REFERENCE 1 AUTHORS Podbielski,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76703|g840723 isolate_name= GH443 BASE COUNT 334 a 339 c 457 g 292 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-- 61 GCUCAG-GAC -GAAC-GC-- UGGC-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CU-G--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CCCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUUU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUU---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-ACG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AU- C-GCAA-UC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AGUA-G AUAC)-CCU- ----GGUA-A UC----CAU- G-CC-GU--A 1621 AACGG-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU GCUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AAC A-U-GC-GGA -UUAAUU-CG -(AUUCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGG 1981 -CUU-G--(- GAAA-)-CAG -A-UCUU--- C--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCCC AA-------- CGAG-C--GC AACCU-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-A-G-C- GA-ACC-C(G 2881 -UGA)GGGU- ---------- CA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCAG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C U......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.linens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium linens. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium linens. ORGANISM Brevibacterium linens. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter JOURNAL Int. J. Syst. Bacteriol. 44, 583-585 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76566|g515331 NCDO 739 (T) = DSM 20426 = ATCC 9175 = NCIMB 8546 NB: both Brb.linen* seq to be released; many differences BASE COUNT 341 a 344 c 486 g 298 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-UGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------AA NCCCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C-GGG GUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -ACUU-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--C-A- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- UG-AU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C-CN ---------( -----NUNG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUG---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGU 1981 -UCU-G--(- GAAA-)-CAG ---UUC---- CU-------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------U UA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G G-CC-GU-CU A-AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.casei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium casei. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium casei. ORGANISM Brevibacterium casei. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter JOURNAL Int. J. Syst. Bacteriol. 44, 583-585 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76564|g516258 NCDO 2048 (T) = DSM 20657 = ATCC 35513 = CMD 1 biol_source= cheese BASE COUNT 335 a 338 c 481 g 290 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 N--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AGCCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C-GGG UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C NG-N--C-G- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUG---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGU 1981 -CCU-G--(- GAAA-)-CAG -G-UCCU--- CU-------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GA-------- ----AG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-G-G-C- GA-ACC-C(G 2881 -UGA)GGGC- ---------- AA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ANG--- --UCA-CGAN A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGN---CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-CC-GU-CU A-AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.epider 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium epidermidis. ORGANISM Brevibacterium epidermidis. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter JOURNAL Int. J. Syst. Bacteriol. 44, 583-585 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76565|g515330 NCDO 2286 (T) = DSM 20660 = ATCC 35514 = NCTC 11083 biol_source= skin BASE COUNT 344 a 344 c 489 g 302 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AGCCGAC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUUGG UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -AUUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--C-U- ---GAC-(-- --------GC 541 AU-------- -)-GUU---- GN-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--AUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUG---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AC----CGU 1981 -UCU-G--(- GAAA-)-CAG ---UUC---- UU-------- ---CU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----AG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-G-G-C- GA-ACC-C(G 2881 -UGA)GGGU- ---------- AA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGU-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-CC-GU-CU A-AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG-C--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.iodini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium iodinum. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium iodinum. ORGANISM Brevibacterium iodinum. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter JOURNAL Int. J. Syst. Bacteriol. 44, 583-585 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76567|g516215 NCDO 613 (T) = DSM 20626 BASE COUNT 335 a 332 c 475 g 291 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ..CCAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUGG UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ANUU-C-NG 421 -GAU-AA-GC C--------- ------NG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--C-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--AUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUG---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AC----CGU 1981 -UCU-G--(- GAAA-)-CAG ---UUC---- UU-------- ---CU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----AG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-G-G-C- GA-ACC-C(G 2881 -UGA)GGGU- ---------- AA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGU-C-CC -AA-CCCC-- ---------- ---------- -----(---- -UUUUUU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-G G-NN-GU-CU A-AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.linen2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium linens.. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium linens. ORGANISM Brevibacterium linens. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N., Prauser,H. and Stackebrandt,E. TITLE Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidoglycan JOURNAL FEMS Microbiol. Lett. 118, 135-140 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77451|g515022 NB: both Brb.linen* seq to be released; many differences BASE COUNT 341 a 350 c 485 g 295 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GAA- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCA-GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---G -AUUU-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--AUC---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----CGUAA ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-C-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GN-UG- 1261 C-UC-ACG|U CUG---CUGU G-GAA-AC-G CG-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-NC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AC----CGU 1981 -UCU-G--(- GAAA-)-CAG ---UUCU--- CU-------- ---------- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----AG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-G-G-C- GA-ACC-C(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGU-C-CC -AA-CCC--- ---------- ---------- -----(---- -CCUUUGU-- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-C--GU-CU --AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.iodin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium iodinum.. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium iodinum. ORGANISM Brevibacterium iodinum. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83813|g1051123 BASE COUNT 347 a 351 c 487 g 300 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A AGCCAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUG- UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -AUUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--C-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--AUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------U 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 G-UC-ACG|U CUG---CUGU G-GAA-AC-G CA-ACG-C(- UU-A)A-CGU -UG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC U-GACUA-GA GUG-----CA G-UA-GGGGA GUC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GACUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AC----CGU 1981 -UCU-G--(- GAAA-)-CAG ---UUC---- UU-------- ---CU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----AG---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-G-G-C- GA-ACC-C(G 2881 -UGA)GGGU- ---------- AA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAU-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGU-C-CC -AA-CCC--- ---------- ---------- -----(---- -CCUUUUU-- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-G G-C--GU-CU --AGGU-GGG ACU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.9.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.9.5 DERMATOPHILUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.9.5 DERMATOPHILUS_GROUP. ORGANISM 2.16.1.9.5 DERMATOPHILUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.faecim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium faecium.. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium faecium. ORGANISM Brachybacterium faecium. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83810|g1051122 BASE COUNT 344 a 352 c 492 g 292 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGGUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGCC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---C -ACUU-C-GG 421 -GAU-AA-CC U--------- ------CG-- G(-GAAA-)U -CGAG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-U--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-GC----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-AAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.faeci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium faecium. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium faecium. ORGANISM Brachybacterium faecium. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91032|g1359505 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 348 a 359 c 503 g 301 t 2865 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGGUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGCC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUU-C-GG 421 -GAU-AA-CC U--------- ------CG-- G(-GAAA-)U -CGAG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-U--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AC----GGU 1981 -CGC-A--(- GAGA-)-UGU -G-GC----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-AAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.conglm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium conglomeratum. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium conglomeratum. ORGANISM Brachybacterium conglomeratum. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91030|g1359502 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 348 a 354 c 501 g 307 t 2866 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGGUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGCC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUU-C-GG 421 -GAU-AA-CC U--------- ------CG-- G(-GAAA-)U -CGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CA-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G UU-GGAAA-- ---NA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-GAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-U-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GU-UUG ACA-UG|-C- ---------A ---CUGG--- -AC----GGC 1981 -UGC-A--(- GAGA-)-UGU -G-GC----- U--------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-A(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-AAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CU A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.tyfrmn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium tyrofermentans. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium tyrofermentans. ORGANISM Brachybacterium tyrofermentans. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91657|g1359532 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 354 c 490 g 313 t 2866 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGACCG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CGGUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUU-C-GG 421 -GAU-AA-CC U--------- ------CG-- A(-GAAA-)U -UGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CU-U--C-C- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCA-GC-GU 961 G-G-GG-G-A U-GAC--U-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GUAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -AU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----GGC 1981 -UGC-A--(- GAAA-)-UGU -G-GC----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-AAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CU A-AGGU-GGG AUU-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.alimnt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium alimentarium. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium alimentarium. ORGANISM Brachybacterium alimentarium. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91031|g1359498 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 349 a 357 c 497 g 307 t 2866 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGACCG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CGGUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---C -ACUU-C-GG 421 -GAU-AA-CU U--------- ------CG-- A(-GAAA-)U -CGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CU-U--C-C- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-UG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AC----GGC 1981 -UGC-A--(- AAAA-)-UGU -G-GC----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-AAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUAA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bcb.nester 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brachybacterium nesterenkovii. ACCESSION No information KEYWORDS No information. SOURCE Brachybacterium nesterenkovii. ORGANISM Brachybacterium nesterenkovii. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91033|g1359512 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 347 a 366 c 499 g 299 t 2865 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--NU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ACGAUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAUC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CG-- G(-GAAA-)U -CGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G UU-U--C-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----U CU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----AGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C CG-AGG-C(- UC-A)A-CCU -CG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AC----AGC 1981 -CCC-A--(- GAGA-)-UGG -G-GU----- C--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AU-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drb.homin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermabacter hominis. ACCESSION No information KEYWORDS No information. SOURCE Dermabacter hominis. ORGANISM Dermabacter hominis. REFERENCE 1 AUTHORS Schubert,K., Ludwig,W., Springer,N., Kroppenstedt,R.M., Accolas,J.P. and Fiedler,F. TITLE Two coryneform bacteria isolated from the surface of French Gruyere and Beaufort cheeses are new species of the genus Brachybacterium: Brachybacterium alimentarium sp. nov. and Brachybacterium tyrofermentans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (1), 81-87 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91034|g1359603 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 335 a 349 c 509 g 316 t 2867 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAG 121 C--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGG-G--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CU-U--G-G- ---CCC-(-- --------GC 541 AU-------- -)-GG----U UU-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GC-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACCCU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGA|G UAAA-GGGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-U CG-AGG-C(- UU-A)A-CCU -UG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUGC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GU----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- GAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CC -AA-GC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCGGG-G-A G-UC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drb.homini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermabacter hominis. ACCESSION No information KEYWORDS No information. SOURCE Dermabacter hominis. ORGANISM Dermabacter hominis. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Phylogenetic analysis of species of the meso-diaminopimelic acid-containing genera Brevibacterium and Dermabacter JOURNAL Int. J. Syst. Bacteriol. 44, 583-585 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76728|g515777 NCFB 2769 = ATCC 49369 BASE COUNT 334 a 341 c 493 g 309 t 2899 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGG-G--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CU-U--G-G- ---CCC-(-- --------GC 541 AU-U------ -)-GGG---- UU-UU----G GU-NGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --AG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-AGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-U CG-AGG-C(- UU-A)A-CCU -UG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GU----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CNN- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CC -AA-GC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCGGG-G-A G-UC-GU-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAANG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drb.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermabacter sp. str. CDC group 5, 8. ACCESSION No information KEYWORDS No information. SOURCE Dermabacter sp. str. CDC group 5, 8. ORGANISM Dermabacter sp. REFERENCE 1 AUTHORS Funke,G., Stubbs,S., Pfyffer,G.E., Marchiani,M. and Collins,M.D . TITLE Characteristics of CDC group 3 and group 5 coryneform bacteria isolated from clinical specimens and assignment to the genus Dermabacter JOURNAL J. Clin. Microbiol. 32, 1223-1228 (1994) STANDARD No information COMMENTS Organism information Culture collection: CDC group 5 Sequence information (bases 1 to 4376) Corresponding GenBank entry: S71384|g639936 isolate_name= CDC group 5, 8 BASE COUNT 335 a 338 c 491 g 299 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AANCUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGG-G--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C UA-U--G-G- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --AG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-AGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUN---CCGU G-AAA-AC-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GU----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CC -AA-GC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCNGG-G-A G-UC-GU-CG A-AGGU-GGG AUC-GG-UG- ANU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Drb.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermabacter sp. str. CDC group 3, 427. ACCESSION No information KEYWORDS No information. SOURCE Dermabacter sp. str. CDC group 3, 427. ORGANISM Dermabacter sp. REFERENCE 1 AUTHORS Funke,G., Stubbs,S. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: CDC group 3 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76733|g599728 Former RDP Sids: Drb.sp isolate_name= CDC group 3, 427 BASE COUNT 335 a 338 c 491 g 299 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AANCUG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGG-G--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C UA-U--G-G- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --AG-GAA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-AGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CUN---CCGU G-AAA-AC-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GU----- U--------- ---UU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----A---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C GUG--CUACA AUGGU-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCUA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CC -AA-GC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCNGG-G-A G-UC-GU-CG A-AGGU-GGG AUC-GG-UG- ANU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dc.nishino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermacoccus nishinomiyaensis. ACCESSION No information KEYWORDS No information. SOURCE Dermacoccus nishinomiyaensis. ORGANISM Dermacoccus nishinomiyaensis. REFERENCE 1 AUTHORS Stackebrandt,E., Koch,C., Gvozdiak,O. and Schumann,P. TITLE Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend . JOURNAL Int. J. Syst. Bacteriol. 45, 682-692 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87757|g1051161 Former RDP Sids: Mic.nishmy DSM 20448 (T) = IMET 11365 = CCM 2140 = ATCC 29093 NB: former name Micrococcus nishinomyaensis BASE COUNT 337 a 349 c 487 g 290 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CG-A--U-U- ---UCC-(-- --------GC 541 AU-------- -)-GGA---G UG-UU----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UAAC- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-UUC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----UCA 1981 -UGC-A--(- GAGA-)-UGU -G-UGCG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ky.sedntrs 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kytococcus sedentarius. ACCESSION No information KEYWORDS No information. SOURCE Kytococcus sedentarius. ORGANISM Kytococcus sedentarius. REFERENCE 1 AUTHORS Stackebrandt,E., Koch,C., Gvozdiak,O. and Schumann,P. TITLE Taxonomic dissection of the genus Micrococcus: Kocuria gen. nov., Nesterenkonia gen. nov., Kytococcus gen. nov., Dermacoccus gen. nov., and Micrococcus Cohn 1872 gen. emend . JOURNAL Int. J. Syst. Bacteriol. 45, 682-692 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87755 Former RDP Sids: Mic.sedntr DSM 20547 (T) = CCM 314 = ATCC 14392 NB: former name Micrococcus sedentarius BASE COUNT 342 a 350 c 492 g 295 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GNUCAG-GGC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---C -ACUC-U-GG 421 -GAU-AA-GC G--------- ------CU-- G(-GAAA-)C -GGCG-U--C UAAUACU-GG 481 AU-ACG---- ---------- -------A-C CG-A--C--C ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UG-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----GUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-U CA-GGG-C(- UU-A)A-CCC -UG-G-ACG- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUA-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GC-GU-GGG -UC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -AUCCG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- CC-------- ----C----- --(U------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- ---------- ---GGG---| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-ACG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- CUUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGU-GGG ACC-GG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Der.congo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermatophilus congolensis. ACCESSION No information KEYWORDS No information. SOURCE Dermatophilus congolensis. ORGANISM Dermatophilus congolensis. REFERENCE 1 AUTHORS Normand,P., Orso,S., Cournoyer,B., Jeannin,P., Chapelon,C., Dawson,J., Evtushenko,L. and Misra,A.K. TITLE Molecular phylogeny of the genus Frankia and related genera and emendation of the family Frankiaceae JOURNAL Int. J. Syst. Bacteriol. 46, 1-9 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L40615|g710506 biol_source= scab from infected cattle BASE COUNT 333 a 341 c 481 g 297 t 2924 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU--GGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-A C-CCCU---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CC-- G(-GAAA-)C -GGG--U--C UAAUACU-GA 481 AU-AUG---- ---------- -------A-C CU-U--U--C ---CUC-(-- --------GC 541 AU-------- -)-GAG---G -U-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GGA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-C CA-GGG-C(- UU-A)A-CCC -UG-G-ACG- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-CG- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------G|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-G GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -A-CUCCC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 --UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG UGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CACUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Der.congol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dermatophilus congolensis. ACCESSION No information KEYWORDS No information. SOURCE Dermatophilus congolensis. ORGANISM Dermatophilus congolensis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59057 biol_source= scab from infected cattle BASE COUNT 335 a 336 c 489 g 304 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCUUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-A C-CCCU---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CC-- G(-GAAA-)C -GGGG-U--C UAAUACU-GA 481 AU-AUG---- ---------- -------A-C CU-U--U--C ---CUC-(-- --------GC 541 AU-------- -)-GAG---G -U-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GGA-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-C CA-GGG-C(- UU-A)A-CCC -UG-G-ACG- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----UG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------G|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAG 1981 -UGC-A--(- GAGA-)-UGU -A-CUCCC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG UGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CACUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.10 ACTINOMYCES_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.10 ACTINOMYCES_AND_RELATIVES. ORGANISM 2.16.1.10 ACTINOMYCES_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.A.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.10.1 ACTINOMYCES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.10.1 ACTINOMYCES_GROUP. ORGANISM 2.16.1.10.1 ACTINOMYCES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.naeslu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces naeslundii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces naeslundii. ORGANISM Actinomyces naeslundii. REFERENCE 1 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information REFERENCE 2 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53226 DSM 43013 = NCTC 10301 (T) = ATCC 12104 BASE COUNT 265 a 323 c 480 g 280 t 3028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ....GUGAG- UAA--CCU-G --CCCC---U -UCUU-C-UG 421 -GAU-AA-CC G--------- ------CA-- U(-GAAA-)G -UGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GG-CC----U GG--GAAA-- ---GA---UU --GGCGCC-- 601 --(------- --UUUUUU-- ---)------ ----GGUGU| ---UUU--U- G--GUG---- 661 ----GGGG-- AUG---G-|N CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AN-G-CC --UGC-CU-( ----CGUUUG U--------) -GGG-UC-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GC-UN- 1261 G-UN-GCG|U CUN---UCGU G-AAA-UC-C UC-UNG-C(- UN-A)A-CUN -GG-G-UCU- 1321 -UNCG-GUGG N-NAC-GGGC C-GGCUN-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(AUU-CC)- ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCCG--- -UC----UNC 1981 -UCC-G--(- GAGA-)-CGG -G-GNAGC-- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG U-)------- GG-------- ----GG---| CUG-GU-NCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UNG-C-N- ---------- ---------- ---------- -----(---- -NCGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----G-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.naesl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces naeslundii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces naeslundii. ORGANISM Actinomyces naeslundii. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M33911 DSM 43013 = NCTC 10301 (T) = ATCC 12104 BASE COUNT 266 a 333 c 466 g 281 t 3030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ....GUCAG- UAA--CCU-G --CCCC---U -UCUU-C-UG 421 -GAU-AA-CC G--------- ------CA-- U(-GAAA-)G -UGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-CGU---G GG-CC----U GG--GAAA-- ---GA---UU --GGCGCC-- 601 --(------- --UUUUUU-- ---)------ ----GGUGU| ---UUU--U- G--GUG---- 661 ----GGGG-- AUC---G-|N CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GC-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AN-G-CC --UGC-CU-( ----CGUUUG U--------) -GGG-UC-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG --------CC 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-AAGC- NGG-UAG-GC -G|-CC-UN- 1261 G-UN-GCG|U CUN---UCGU G-AAA-UC-C UC-UNG-C(- UN-A)A-CUN -GG-G-UCU- 1321 -UNCG-GUGG N-NAC-GGGC C-GGCUN-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUC-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(AUU-CC)- ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCNG--- -UC----UNC 1981 -UCC-G--(- GAGA-)-CGG -G-GNNUC-- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG U-)------- GG-------- ----GG---| CUG-GU-NCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UCG- 2281 UG--UUGC-C AG-CAAC--- ---------- ---------- ---G(---UN ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UC-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUCGC-C-GG -UA--CAGAG GGC-U-C-C- GA-UAC-C(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCC -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UNG-C-N- ---------- ---------- ---------- -----(---- -NCGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----G-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.naesl3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces naeslundii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces naeslundii. ORGANISM Actinomyces naeslundii. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81062|g1838946 NCTC 10301 (T) = ATCC 12104 = DSM 43013 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 284 a 347 c 509 g 310 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 ACUCAG-GAC -GAAC-GC-- UGCC-GGC-G -UAC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GGGGCCU-GC (--UU----- ---------- ---------- 241 --------UU -)GU-GGGUC CU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-UG 421 -GAU-AA-CC G--------- ------CA-- U(-GAAA-)G -UGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GG-CC----U GG--GAAA-- ---GA---UU --GCGCCU-- 601 --(------- ---UUUUU-- ---)------ ----GGUGU| ---UUU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --UGC-CU-( ----CGUUUG U--------) -GGG-UG-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(UUU-CC)- ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -UC----UGC 1981 -UCC-G--(- GAGA-)-CGG -G-GUUUC-- CU-------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GGG------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-U....... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.visco3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces viscosus. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces viscosus. ORGANISM Actinomyces viscosus. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82453|g1838951 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 281 a 340 c 501 g 295 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUUC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-UG 421 -GAU-AA-CC G--------- ------CA-- U(-GAAA-)G -UGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GG-CC----U GG--GAAA-- ---GG----- ---------- 601 --(------- --UUUGUU-- ---)------ ---------| -----C--C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --UGC-UC-( -----CUUGU ---------) -GGG-UG-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(UUU-CC)- ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AU----GGU 1981 -CCU-G--(- GAGA-)-CGG -G-GUUUC-- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -UA-UGG... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.visco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces viscosus. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces viscosus. ORGANISM Actinomyces viscosus. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M33908 BASE COUNT 265 a 316 c 468 g 264 t 3063 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAN-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC----- 121 G--GU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGCC-AG (--CU..... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG..... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-.GAAA-- ---GG----- ---------- 601 --(------- --UUUGNU-- ---)------ ---------| -----C--C- G--GUG---- 661 ----GGGG-- AUN---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA -)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --UGC-UC-( -----CUUGU ---------) -G-G-UN-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GC-UN- 1261 G-UN-GCG|U CUC---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-UCN- 1321 -NNCG-GUGG G-UAC-GGGC C-GGCUN-GA GUG-----NG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-- UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(AUU-CA)C ---------- ---------- GC-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UNG ACA-UA|-U- ---------G ---CCGG--- -GU----NGU 1981 -CCU-N--(- GAGA-)-NGG -G-GNUUN-- CU-------- ---NC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----GG---| CUN-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---CUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CU-CA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UGC-U(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCN 3121 G-UNG-C-CC ----A----- ---------- ---------- -----(---- -NNNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UGGG-G-A G-CC-GU-CG A-AGGU-NGG GCU-NG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.viscos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces viscosus. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces viscosus. ORGANISM Actinomyces viscosus. REFERENCE 1 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information REFERENCE 2 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53225 NB: DSM 43027 needs to be checked; DSM 43327 (T)?; ATCC 15987 BASE COUNT 288 a 334 c 506 g 289 t 2959 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ........GG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAN-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC----- 121 G--GU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAGCC-AG (--CU..... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-UG 421 -GAU-AA-CC G--------- ------CA-- U(-GAAA-)G -UGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GG-CC----U GG--GAAA-- ---GG----- ---------- 601 --(------- --UUUGNU-- ---)------ ---------| -----C--C- G--GUG---- 661 ----GGGG-- AUN---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --UGC-UC-( -----CUUGU ---------) -GGG-UN-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GC-UN- 1261 G-UN-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-UCN- 1321 -NNCG-GUGG G-UAC-GGGC C-GGCUN-GA GUG-----NG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(AUU-CA)C ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UNG ACA-UA|-U- ---------G ---CCGG--- -AU----NGU 1981 -CCU-N--(- GAGA-)-NGG -G-GNUUN-- CU-------- ---NC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ----GG---| CUN-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UGC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCN 3121 G-UNG-C-CC ----A----- ---------- ---------- -----(---- -NNNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UGGG-G-A G-CG-GU-CG A-AGGU-NGG GCU-NG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.slacki 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces slackii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces slackii. ORGANISM Actinomyces slackii. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82452|g1838949 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 241 a 308 c 443 g 249 t 3135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... ...UUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-A-CC --GCC-UC-( -----CUGUG U--------) -GGG-GU-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UC-A)A-CUG -GG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GNA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(UUU-CC)- ---------- ---------- GG-------- -------GUC -UUCCG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------C ---AGCG--- -CU----GGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUCUC-- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ----GG---| CGC-UG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-G-CC -UA-CGG... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.dentic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces denticolens. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces denticolens. ORGANISM Actinomyces denticolens. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80412|g1838938 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 271 a 339 c 511 g 299 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- UGCCCUG-GC (--UU----- ---------- ---------- 241 --------UU -)GU-UGGGG UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-UG 421 -GAU-AC-CG C--------- ------CA-- C(-GAAA-)G -UGGU-G--U UAAUACG-GG 481 AU-AUU---- ---------- -------C-U GG-C--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GG-GU----U GG--GAAA-- ---GG----- ---------- 601 --(------- -UCUUUUGU- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-G|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --CGC-UC-( ----CUUUUG GU-------) -GGG-CG-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU GAAAA-UC-C UU-CGG-C(- UU-A)A-CCG -GG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GCCU-- ---------- 1681 -(-UU-CC)- ---------- ---------- GG-------- -------GUU -GUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AU----GGU 1981 -CUC-G--(- GAGA-)-CGG -G-GCUU--- CC-------- --UCA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- UGG------- ----GG---| UCG-GUUNCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GG-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-N-CU -UA-CGGGG. .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces bovis. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces bovis. ORGANISM Actinomyces bovis. REFERENCE 1 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information REFERENCE 2 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53224|g38653 DSM 43014 = ATCC 13683 (T) BASE COUNT 267 a 318 c 469 g 287 t 3035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCN---N -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- U(-GAAA-)G -GGUN-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------U-U GG-C--C-UG ---CUC-(-- --------GC 541 AU-------- -)-GGG---U GG-GU----U UG--GAAA-- ---GG----- ---------- 601 --(------- -UUCUUUUU- ---)------ ---------| -----C--U- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --GCC-UC-( -----UUUGU ---------) -GGG-GU-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GC-UN- 1261 G-UC-GCG|U CUN---UCGU G-AAA-UC-C UC-UNG-C(- UN-A)A-CUG -GA-G-GCU- 1321 -UNCG-GUGG G-UAC-GGGC C-GGCUN-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GG-GGG -CU-CUU--- ---------- 1681 -(-UC-CG)- ---------- ---------- -G-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---GGUG--- -UU----GAU 1981 -CAC-G--(- GAGA-)-CGU -G-GUUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G---| CGC-CU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--NCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-N NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UGU-C(G 2881 -UNA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-NG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- CUC-ACG--- --NNA-UNAA A--GC-UGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CU ---------- ---------- ---------- -----(---- -UAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---GGG-G-A G-CG-GU-CG A-AGGU-NGG GCU-NG-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.bovis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces bovis. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces bovis. ORGANISM Actinomyces bovis. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81061|g1838937 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 287 a 338 c 498 g 310 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGCC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--NU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- ---|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- U(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 AU-AUU---- ---------- -------U-U GG-C--C-UG ---CUC-(-- --------GC 541 AU-------- -)-GGG---U GG-GU----U UG--GAAA-- ---GG----- ---------- 601 --(------- -UUCUUUUU- ---)------ ---------| -----C--U- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GC-AG-G-CC --GCC-UU-( -----CUUUG U--------) -GGG-GU-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GA-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CUCU-- ---------- 1681 -(-UU-CC)- ---------- ---------- GG-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---GGUG--- -UU----GAU 1981 -CAC-G--(- GAGA-)-CGU -G-GUUU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AG---| CGC-CU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UGU-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GC-UGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-UU -AU....... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.howell 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces howellii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces howellii. ORGANISM Actinomyces howellii. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80411|g1838941 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 274 a 342 c 507 g 291 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----C UG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CGCCUG-CC (--CU----- ---------- ---------- 241 -------UGU -)GG-UGGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUC-C-UG 421 -GAU-AA-CC G--------- ------CU-- U(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 GU-GUU---- ---------- -------C-U GG-U--C-CU ---GCU-(-- --------GC 541 AU-------- -)-GGU---G GG-GU----U GG--GAAA-- ---GA---U- --GCACU--- 601 --(------- ---GUUAG-- ---)------ ----GGUGU| ---UUU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAA-- GA-AG-G-CG --CUC-CU-( -----CGUUG U--------) -GGG-GG-UG 1081 ---------- -------U-- U-GA-CGGU- A-GCU-G-GA U-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC C-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CUCU-- ---------- 1681 -(-UU-CC)- ---------- ---------- GG-------- -------GGU -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------U ---CCGG--- -UC----GCC 1981 -CGC-G--(- GAGA-)-CGU -G-GGUUC-- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ----GG---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGU-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.israe5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces israelii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces israelii. ORGANISM Actinomyces israelii. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82450|g1838944 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 255 a 337 c 534 g 313 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-AUGCA A-GUC-GAAC 121 G--GG----U CU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCCUU-GU (--UU----- ---------- ---------- 241 -------UUU -)GC-GGGGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GGG|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---C -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- U(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 GU-GUU---- ---------- -------C-U GG-C--U-GU ---GCC-(-- --------GC 541 AU-------- -)-GGU---G UG-GC----U GG--GAAA-- ---GA---UU ---CAC---- 601 --(------- ---UUUU--- ---)------ -----GUGG| UGUU-U--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GGUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGUC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-AG-G-UC --CUG-CU-( -----CUUUG U--------) -GGU-GG-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCCGG-GU U-AU--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UC-A)G-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-CGCUU-GA GUG-----CG G-UA-GGGGA GGC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUCU-- ---------- 1681 -(-UU-CC)- ---------- ---------- GG-------- -------GUC -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GNC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-G- ---------G ---CCGG--- -CU----GCU 1981 -CCU-G--(- GAGA-)-CGG -G-GGCCU-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- -----G---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-U--G |-UC--CCG- 2281 UG--UUGC-C AG-CGU---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- GA-UGU-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GC-CGG- CG-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC ---------- ---------- ---------- -----(---- -UGUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-UG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.israe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces israelii.. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces israelii. ORGANISM Actinomyces israelii. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M33912 BASE COUNT 203 a 253 c 390 g 220 t 3310 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCN---N -ACNU-C-UG 421 -GAU-AA-CC G--------- ------CU-- N(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 NU-NUU---- ---------- -------C-U GG-C--U-NU ---GCC-(-- --------GC 541 AU-------- -)-GGU---G UG-GC----U GG--GAAA-- ---GA---UU ---CAC---- 601 --(------- ---UUUU--- ---)------ -----GUGG| UGUUUU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUNGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UN- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- NGG-N|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC .......... .(....)... .......... .......... 901 ....AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGUN-GC-GU 961 G-A-GG-G-N U-NGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CG 1021 --GU-GAA-- GA-AG-G-UC --CNN-UN-( -----NUNNG U--------) -GGU-GG-GN 1081 ---------- -------N-- N-NA-CGGU- A-GCC-G-GN N-AU--GAAG ---------N 1141 -GCCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......CGU G-AAA-UC-C UC-N....(. ..-.)..... .......... 1321 .......... ...AC-GGGC U-NGCUN-NA GUG----CCG U-AG-GGNNG GGC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUCU-- ---------- 1681 -(-NU-CC)- ---------- ---------- GG-------- -------GUC -CUCCG-CGC 1741 CG--UA---- --GC-(UNA- ---C)G-CU- NUAA-GUGCC C|C|G-CCUG G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G N--NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UNNAUU-CG -(AUGNNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-G- ---------G ---CCGG--- -CU----GCU 1981 -CCU-G--(- GAGA-)-CGG -G-GGCCU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NANA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-U |-UC--CGG- 2281 UG--UUGN-C AGGUNUG--- ---------- ---------- ----(----- ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- C-NGN-AA-G A-NU-G-CCG --GG(-NN-N NA)-CNC-G- -GAGG-A-NG 2761 G-UG-GNN-N NG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNNU-G-UC -UU--GGGC- 2821 U-NCA-CG-C AUG--CUNCA AUGGC-C-GG -UA--CAGAG GGN-N-N-C- GA-UGU-C(G 2881 -UNA)GGCG- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGC-UG -GAGU-CGC- -UNGUN-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.geren3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces gerencseriae. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces gerencseriae. ORGANISM Actinomyces gerencseriae. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80414|g1838939 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 259 a 327 c 516 g 312 t 2962 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UC-GAAC 121 G--GG----C UU-------- ---------- ---------- ---------- ---------- 181 ---------- -----CUGGG GUUCUGG-CU (--UU----- ---------- ---------- 241 -------UUU -)GG-UUGGG GUUCUGG--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GGG|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---C -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- U(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 AU-GUUU--- ---------- -------C-U GG-G--U-CU ---GUC-(-- --------GC 541 AU-------- -)-GGC---G GG-UU----C GG--GAAA-- ---GA---U- -GGCACU--- 601 --(------- ---GUUU--- ---)------ ----GGUGU| U---UU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGUC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAG-- GA-AG-G-CC --UUG-CC-( -----CGUGU ---------) -GGU-GG-GG 1081 ---------- -------U-- U-GA-CGGU- A-GCUGG-GU U-AAUUGAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UC-A)G-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-GGCUU-GA GUG-----CG G-UA-GGGGA GGC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUCU-- ---------- 1681 -(-UU-CC)- ---------- ---------- GG-------- -------GUC -CUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- UUG----UCC 1981 -UUC-G--(- GAGA-)-CGG -A-GGGUC-- CU-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG C-)------- GGG------- ----GG---| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- GA-UGU-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGUGUC- (UGCAAC-U- C)-GACACCG -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGC)-G CUG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GC-UGG- CA-AC-ACCN -GAA-G-CCC 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.gerenc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces gerencseriae str. WVU 307 DSM 43322. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces gerencseriae str. WVU 307 DSM 43322. ORGANISM Actinomyces gerencseriae. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii- specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43322 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67456 (bases 1 to 95) Former RDP Sids: Act.israe4 DSM 43322 = CDC W1011 = ATCC 29332 isolate_name= WVU 307 NB: former name Actinomyces israelii BASE COUNT 123 a 154 c 256 g 147 t 3696 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCN---N -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- N(-GAAAA)G -GGUG-G--C UAAUACG-GG 481 AU-NUUU--- ---------- -------C-U GG-G--U-NU ---NUC-(-- --------GC 541 AU-------- -)-GGC---G GG-UN----N GG--NNAA-- ---GA---U- -GGCACU--- 601 --(------- ---GUUU--- ---)------ ----GGUGU| U---UU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUNGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UN- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- NGG-N|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -H........ .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... ....A--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAG-- GA-AG-G-CC --NUG-CC-( -----CNUNU ---------) -GGU-GG-NN 1081 ---------- -------U-- N-NA-CGGU- A-GCUGG-GN N-NAUUGAAG ---------N 1141 -GCCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-N)NNNN- -NUCUCUN-- ---------- ---------- ---------G 1501 GCC--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUCU-- ---------- 1681 -(-NU-CC)- ---------- ---------- GG-------- -------GUC -CUCCG-CGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UNAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CN-NAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UNNAUU-CG -(A....... .)........ 1921 .......... .......... ......|... .........G ---CCGG--- --C----UGC 1981 -UUC-G--(- GAGA-)-CGG -G-GGGUC-- CU-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GGG------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(U... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.geren2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces gerencseriae str. WVU 307 DSM 43322. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces gerencseriae str. WVU 307 DSM 43322. ORGANISM Actinomyces gerencseriae. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43322 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M33913 Former RDP Sids: Act.israe3 DSM 43322 = CDC W1011 = ATCC 29332 isolate_name= WVU 307 NB: former name Actinomyces israelii BASE COUNT 127 a 159 c 258 g 150 t 3682 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCN---N -ACUU-C-UG 421 -GAU-AA-CC G--------- ------CU-- N(-GAAA-)G -GGUG-G--C UAAUACG-GG 481 AU-NUUU--- ---------- -------C-U GG-G--U-NU ---NUC-(-- --------GC 541 AU-------- -)-GGC---G GG-UN----N GG--NNAA-- ---GA---U- -GGCACU--- 601 --(------- ---GUUU--- ---)------ ----GGUGU| U---UU--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUNGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UN- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- NGG-N|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... ....A--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CA 1021 --GU-GAG-- GA-AG-G-CC --NUG-CC-( -----CNUNU ---------) -GGU-GG-NN 1081 ---------- -------U-- N-NA-CGGU- A-GCUGG-GN N-NAUUGAAG ---------N 1141 -GCCGGCU-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGACG- AACA-CCGG- 1441 -U-G-GC(-G AA--)----- --UCUCUN-- ---------- ---------- ---------G 1501 GCC--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-GUCU-- ---------- 1681 -(-NU-CC)- ---------- ---------- GG-------- -------GUC -CUCCG-CGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UNAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CN-NAAACUC -AAA-GGAAU UG-GCGGG-N -N-C-CN--- 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UNNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUGC-C. .......... ......|... .......... .....GG--- --C----UGC 1981 -UUC-G--(- GAGA-)-CGG -G-GG-UC-- CU-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GGG------- ----GG---| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UU.. ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.neuii3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces neuii subsp. anitratus str. 50/90. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces neuii subsp. anitratus str. 50/90. ORGANISM Actinomyces neuii. REFERENCE 1 AUTHORS Funke,G., Stubbs,S., von Graevenitz,A. and Collins,M.D. TITLE Assignment of CDC group 1 and CDC group 1-like bacteria to the genus Actinomyces as Actinomyces neuii subsp. neuii sp. nov. subsp. nov. and Actinomyces neuii subsp. anitratus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 167-171 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71862|g433525 Former RDP Sids: Act.anitra isolate_name= 50/90 NB: former name Actinomyces anitratus BASE COUNT 301 a 318 c 522 g 347 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAUC ---------- ---------- ---------- ---------- 181 ---------- ---------- CAUUAGC-GC (--UU----- ---------- ---------- 241 --------UU -)GU-GUUUU UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GUGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---U -UCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-GUU---- ---------- -------C-C GN-C--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UU-GU----U GG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GAU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AC-(GGA A)-GUC-UGA UGCA|-CCGA CGUC-GU-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CC 1021 --GC-GGA-- AA-AG-G-CA --GGG----( -----UUUUG G--------) ---C-CU-UG 1081 ---------- -------U-- U-GA-UGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-C ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---GCGU U-UAA-GG-C UC-GGG-C(- UU-A)A-CCC -GG-G--UU- 1321 -UGCG-UUGG G-UAC-GGGC A-GGCUU-GA GUG-----CG G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CUG--- ---------- 1681 -(-GU-UU)- ---------- ---------- CA-------- -------UGG -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGC--- -GA----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-U-(U-AA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-G-CC-C CAUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA GUGGU-G-UC -UA--CAGAG GGU-U-G-C- UA-UUC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CUCUU-AAAG -GG-C-AUC- UUGGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UG -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCU 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UG-GU-CG A-AGGU-GGG GCU-AG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.neuii2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces neuii subsp. neuii str. 97/90. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces neuii subsp. neuii str. 97/90. ORGANISM Actinomyces neuii. REFERENCE 1 AUTHORS Funke,G., Stubbs,S., von Graevenitz,A. and Collins,M.D. TITLE Assignment of CDC group 1 and CDC group 1-like bacteria to the genus Actinomyces as Actinomyces neuii subsp. neuii sp. nov. subsp. nov. and Actinomyces neuii subsp. anitratus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 167-171 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71861|g433527 Former RDP Sids: Act.multif isolate_name= 97/90 NB: former name Actinomyces multifermentans BASE COUNT 300 a 319 c 522 g 345 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAUC CAUU------ ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------UUU GGUGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---U -UCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-GUU---- ---------- -------C-C GN-C--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UU-GU----U GG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GAU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGCA|-CCGA CGUC-GU-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CU 1021 --GC-GGA-- AA-AG-G-CA --GGG----( -----UUUUG G--------) ---C-CU-UG 1081 ---------- -------U-- U-GA-UGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-C ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---GCGU U-UAA-GG-C UC-GGG-C(- UU-A)A-CCC -GG-G--UU- 1321 -UGCG-UUGG G-UAC-GGGC A-GGCUU-GA GUG-----CG G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CUG--- ---------- 1681 -(-GU-UU)- ---------- ---------- CA-------- -------UGG -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGC--- -GA----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-U-(U-AA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-G-CC-C CAUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA GUGGU-G-UC -UA--CAGAG GGU-U-G-C- UA-UUC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CUCUU-AAAG -GG-C-AUC- UUGGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UG -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCU 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UG-GU-CG A-AGGU-GGG GCU-AG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.sp0960 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus sp. str. 0960. ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus sp. str. 0960. ORGANISM Mobiluncus sp. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82608|g886880 isolate_name= 0960 BASE COUNT 69 a 78 c 124 g 97 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UG|-C- ---------A ---CUGG--- -AC----CGA 1981 -UCC-A--(- GAGA-)-UGG -G-UUUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| CUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUANA UUGGC-G-UC -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GG-GCGAA-U CUCUU-AAAG -GG-C-GUC- UUGGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GGCCCCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UN -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.14331 4376 bp RNA RNA 02-JUL-1998 DEFINITION unnamed organism.. ACCESSION No information KEYWORDS No information. SOURCE unnamed organism. ORGANISM unnamed organism. REFERENCE 1 AUTHORS Van Esbroeck,M., Vandamme,P., Falsen,E., Vancanneyt,M., Moore ,E., Pot,B., Gavini,F., Kersters,K. and Goossens,H. TITLE Polyphasic approach to the classification of Gardnerella vaginalis and unidentified Gardnerella vaginalis-like coryneforms present in bacterial vaginosis JOURNAL Int. J. Syst. Bacteriol. 46, 675-682 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87133|g971310 LMG 14331 = CCUG 32390 = ITG 137 BASE COUNT 304 a 322 c 516 g 331 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGCUCC-AG (--CU----- ---------- ---------- 241 -------UUG -)UU-GGGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---U -UCUU-U-GG 421 -GAU-AA-CG G--------- ------UC-- G(-GAAA-)C -GGCU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CU-C--A-UU ---GGC-(-- --------GC 541 AU-------- -)-GUU---G GU-GG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-W ACG)--GCCC -ARA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAG-C--( -----UUUGG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-CC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGU U-GACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCCU--- -GA----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GUGG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-U-GG -UA--CAGAG UGU-U-G-C- GA-UAU-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CACUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CUC 3121 A-UGG-N-CU -AA-CCGG-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-UG-GGUCG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.turcns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces turicensis str. APL10 DSM 9168 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinomyces turicensis str. APL10 DSM 9168 (T). ORGANISM Actinomyces turicensis. REFERENCE 1 AUTHORS Wust,J., Stubbs,S., Weiss,N., Funke,G. and Collins,M.D. TITLE Assignment of Actinomyces pyogenes-like (CDC coryneform group E) bacteria to the genus Actinomyces as Actinomyces radingae sp. nov. and Actinomyces turicensis sp. nov. JOURNAL Lett. Appl. Microbiol. 20, 76-81 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9168 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78720|g642970 Former RDP Sids: Act.APL10 DSM 9168 (T) = CCUG 32401 legacy_attribute= APL2, APL6 isolate_name= APL10 BASE COUNT 297 a 321 c 506 g 327 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGCUCC-AA (--CU----- ---------- ---------- 241 -------UUG -)UU-GGGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---U -UCUU-U-GG 421 -GAU-AA-CG G--------- ------UC-- G(-GAAA-)C -GNCU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CU-C--A-UU ---GGC-(-- --------GC 541 AU-------- -)-GUU---G GU-GG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAG-C--( -----UUUGG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-CC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGU U-GACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 NCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCCU--- -GA----CGC 1981 -UGC-A--(- GAGA-)-UGU -G-GUGG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-U-GG -UA--CAGAG UGU-U-G-C- GA-UAU-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CACUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CUC 3121 A-UGG-C-CU -AA-CCGG-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUU-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.radnga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces radingae str. APL1 DSM 9169 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinomyces radingae str. APL1 DSM 9169 (T). ORGANISM Actinomyces radingae. REFERENCE 1 AUTHORS Wust,J., Stubbs,S., Weiss,N., Funke,G. and Collins,M.D. TITLE Assignment of Actinomyces pyogenes-like (CDC coryneform group E) bacteria to the genus Actinomyces as Actinomyces radingae sp. nov. and Actinomyces turicensis sp. nov. JOURNAL Lett. Appl. Microbiol. 20, 76-81 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9169 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78719|g642969 Former RDP Sids: Act.spAPL1 DSM 9169 (T) = CCUG 32394 isolate_name= APL1 BASE COUNT 276 a 305 c 508 g 331 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAUC ---------- ---------- ---------- ---------- 181 ---------- ---------- UGCGUGG-CC (--NN----- ---------- ---------- 241 -------UGU -)GG-UUGUG UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GUGAG---- ---|------ ANUG-NCGA- 361 -A-CG-GN-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUU---U -UCUU-U-GG 421 -GAU-AA-CG C--------- ------UC-- A(-GAAA-)U -GGGU-G--C UAAUACU-GG 481 AU-GUU---- ---------- -------C-U GC-G--C-AG ---UUC-(-- --------GC 541 AU-------- -)-GGG---G GA-UG----U GG--GAAA-- ---GGGG-CC ---------- 601 --(------- ---UUUGU-- ---)------ ---------| GGUUUC--U- G--GAG---- 661 ----GGAG-- AUG---G-|G CUCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-G-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GGA A)-CCU-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --GU-GUG-- CA-AG-C-CG --CUA-U--( ------UUGG ---------) --GU-AG-UG 1081 ---------- -------G-- U-GA-GUGU- A-GCG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|C CUG---UCGU G-UAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GUG- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUU-GA GUG-----CG G-UA-GGGGA GAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 NCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GCG UU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GN-CCG--- ---------- 1681 -(-CC-CU)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------G ---CCCU--- -GA----GCG 1981 --CC-A--(- GAGA-)-UAG -G-UGUG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-A-GG -UA--CAGAG GGU-U-G-C- GA-UGC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUU-AAAG -CU-U-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCUCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CUU 3121 G-UGG-C-UU -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.hyovag 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces hyovaginalis. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces hyovaginalis. ORGANISM Actinomyces hyovaginalis. REFERENCE 1 AUTHORS Collins,M.D., Stubbs,S., Hommez,J. and Devriese,L.A. TITLE Molecular taxonomic studies on some Actinomyces-like bacteria isolated from purulent lesions in pigs and description of Actinomyces hyovaginalis sp.nov JOURNAL Int. J. Syst. Bacteriol. 43, 471-473 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69616 NB: former name Actinomyces hydrovaginalis (typo) BASE COUNT 303 a 331 c 526 g 329 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CA----C -----GG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCUUGG-GG (--UU----- ---------- ---------- 241 --------UU -)CC-UUGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UUG- --G|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-N C-CCUC---U -UCUU-U-GG 421 -GAU-AA-CG G--------- ------UC-- G(-GAAA-)C -GGNU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CA-C--A-UU ---GUC-(-- --------GC 541 AU-------- -)-GGU---G GU-GU----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-AC-(GGA A)-GUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAG-C--( -----UUUGG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAN-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-UU-GCG|U CUG---CCGU GAAAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGCC U-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- N-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- UG-------- -------GUU -UCCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUNCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCCA--- -GA----GCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGUG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(U-AA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UGC-U(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGCAAC-U- C)-GACUUCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CNC 3121 A-UGG-C-CU -AA-CCGG-- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGN-G-A G-UG-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.georgi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces georgiae. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces georgiae. ORGANISM Actinomyces georgiae. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80413|g1838940 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 279 a 337 c 511 g 295 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGAC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCCUG-GC (--UU----- ---------- ---------- 241 -------UGU -)GU-UGGGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GGAUG AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---U -UCUU-C-GG 421 -GAU-AA-CG G--------- ------UC-- U(-GAAA-)G -GGCU-G--C UAAUACC-GG 481 GU-AUU---- ---------- -------C-A CU-G--G-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---G GU-UG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-CC 1021 --GU-GGU-- CA-AG-C-CG --CAA-C--( -----UGUGG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GC-UG- 1261 G-UC-GCG|U CUG---CCGU GAAAA-UC-C UC-UGG-C(- UC-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-GGCUU-GA GUG-----CG G-UA-GGGGA GGC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------G ---CCCC--- -GG----GCG 1981 -CGC-G--(- GAGA-)-CGC -G-CGCG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGCG- ---------- GG-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-GCCC -GAA-G-CCC 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.meyeri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces meyeri. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces meyeri. ORGANISM Actinomyces meyeri. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82451|g1838945 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 287 a 329 c 509 g 316 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GGAUG AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUC---U -UCUU-U-GG 421 -GAU-AA-CG C--------- ------CC-- G(-GAAA-)U -GGGU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CU-G--G-UC ---UUC-(-- --------GC 541 AU-------- -)-GGG---G GU-UG----G UG--GAAA-- ---GGG---- ---------- 601 --(------- ---UUUU--- ---)------ ---------| ----UC--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAA-C--( -----UGUGG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------G ---CCCU--- -GG----GCG 1981 -UGC-G--(- GAGA-)-CGU -G-CGUG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-U-GG -UA--CAGAG GGU-U-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCCGGU ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -------GCU .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces sp.. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces sp. ORGANISM Actinomyces sp. REFERENCE 1 AUTHORS Tiveljung,A.M. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82611|g886836 BASE COUNT 69 a 79 c 127 g 92 t 4009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UG|-C- ---------U ---CCCU--- -GG-----GC 1981 -UGC-G--(- GAGA-)-CGU -G-CGUG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UNG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-U-GG -UA--CAGAG GGU-U-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GN-AGA-(UN -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.APL11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces sp. str. APL11. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces sp. str. APL11. ORGANISM Actinomyces sp. REFERENCE 1 AUTHORS Funke,G., Stubbs,S. and Collins,M.D. JOURNAL Lett. Appl. Microbiol. 20, 76-81 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78721|g642971 isolate_name= APL11 BASE COUNT 286 a 313 c 490 g 297 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GN-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-U-GG 421 -GAU-AA-CG C--------- ------CC-- G(-GAAA-)C -GGGU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CU-G--G-UC ---UUC-(-- --------GC 541 AU-------- -)-GGG---G GU-UG----G UG--GAAA-- ---GG----- ---------- 601 --(------- ---GUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAA-C--( ------AAUG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUN( NCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UG- 1261 G-UC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-GACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 CCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GN-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CGGC--- -GG----CAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUGG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UAG U-)------- UG-------- ---------| GUC-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-U-GG -UA--CAGAG GGU-U-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGA-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCGG-- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AAU-GG-CG- AUU-GGGA-C 3301 G---AGU... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.odont2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces odontolyticus.. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces odontolyticus. ORGANISM Actinomyces odontolyticus. REFERENCE 1 AUTHORS Stubbs,L.J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80504|g853707 BASE COUNT 287 a 321 c 483 g 297 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...CGGGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU----- -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GGAUG AGUG-CCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-U-GG 421 -GAU-AA-CG C--------- ------CC-- G(-GAAA-)C -GGGU-G--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-A CU-G--A-UC ---UUC-(-- --------GC 541 AU-------- -)-GGG---G GU-UG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAA-C--( -----UCAAG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-GGGU- A-GUG-G-GU N-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UN- 1261 G-UC-GCG|U CUG---CCGU G-AAA-UC-C UC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-NACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(-CC-CG)- ---------- ---------- -U-------- -------GGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC NAG-GC-UUG ACA-UG|-C- ---------A ---CGGC--- -GG----CAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUGG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UAG U-)------- UG-------- ---------| GUC-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.odonto 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces odontolyticus. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces odontolyticus. ORGANISM Actinomyces odontolyticus. REFERENCE 1 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information REFERENCE 2 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53227 DSM 43331 = NCTC 9931 = ATCC 17982 NB: X53227 updates the sequence contained in M33910 BASE COUNT 282 a 308 c 466 g 278 t 3042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.GN--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-U-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -GGGU-G--C UAAUACN-GG 481 AU-AUU---- ---------- -------C-A CU-G--A-UC ---UUC-(-- --------GC 541 AU-------- -)-NGG---G GU-UG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAA-C--( -----UCAAG ---------) --GU-UG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-GU N-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UNN-UAG-GC -G|-GU-UN- 1261 G-UC-GCG|U CUN---CCGU G-AAA-UC-C UN-UNG-C(- UN-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-NACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-NU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GG-GGG -CN------- -A-------- 1681 -(CCC-GU)A C--------- ---------- ---------- ---------U -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ----)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UN-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUNA-CC UAG-GC-UUN ACA-UG|-C- ---------A ---CGGC--- -GG----CAG 1981 -UGC-A--(- GAGA-)-UGU -N-GUGG--- CA-------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- U-)------- AG-------- ----UU--N| GUC-GU-NUN |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UNG-GG-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNNU-G-UC -UA--GGGC- 2821 U-NCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGN-N-G-C- GA-UNC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CN-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CGC--- ---------- ---------- -----(---- -UNNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCNGGG-G-G A-GN-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.odont3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces odontolyticus. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces odontolyticus. ORGANISM Actinomyces odontolyticus. REFERENCE 1 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M33910|g173689 DSM 43331 = NCTC 9931 = ATCC 17982 BASE COUNT 278 a 310 c 459 g 270 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-GG 421 -GAU-AA-CC G--------- ------CG-- G(-GAAA-)C -GGGU-G--C UAAUACN-GG 481 AU-AUU---- ---------- -------C-A CU-G--A-UC ---UUC-(-- --------GC 541 AU-------- -)-NGG---G GU-UG----G UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GG--UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GUA--G-G CC(--UU-CG --)GG-UUGU GAA--CCUC| UUUC-GC-UC 1021 --AU-GGU-- CA-AG-C-CG --CAA-C--( -----UCAAG ---------) --GU-UG--G 1081 ---------- -------G-- U-GA-CGGU- A-GUG-C-GU N-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UNN-UAG-GC -G|-GU-UN- 1261 G-UC-GCG|U CUN---CCGU G-AAA-UC-C UN-UNG-C(- UN-A)A-CUG -GG-G-GCG- 1321 -UGCG-GUGG G-UAC-GGGC U-NACUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 CU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GG-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-NU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GG-GGG -CN------- -A-------- 1681 -(CC--GU)A C--------- ---------- ---------- ---------U -UUCCG-CGC 1741 CG--UA---- --GC-(UAA- ----)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UN-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUNA-CC UAG-GCUUUG ACA-UG|-C- ---------A ---CGGC--- -GG----CAC 1981 -UGC-A--(- GAGA-)-UGU -N-GUGG--- CA-------- ---UN----- --(N------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- AG-------- ----UN--N| GUC-GU-NUN |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-CC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UNG-GG-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNNU-G-UC -UA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGN-N-G-C- GA-UNC-U(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CN-A-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CGC--- ---------- ---------- -----(---- -UNNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCNGGG-G-G A-GN-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.mulie3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ORGANISM Mobiluncus mulieris. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35243 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82602|g886888 isolate_name= SV 17J BASE COUNT 73 a 82 c 123 g 91 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----CAU 1981 -GCC-A--(- GAGA-)-UGG -U-GUGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.mulie2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ORGANISM Mobiluncus mulieris. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35243 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86004|g1004278 isolate_name= SV 17J BASE COUNT 71 a 68 c 125 g 67 t 4045 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UC- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C AG-CAG-C(- UU-A)A-CUG -UU-G-GUC- 1321 -UGCG-GUGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--A...... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.curti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus curtisii subsp. holmesii ATCC 35242 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus curtisii subsp. holmesii ATCC 35242 (T). ORGANISM Mobiluncus curtisii. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86006|g1004277 BASE COUNT 72 a 68 c 124 g 67 t 4045 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UC- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C AG-CAG-C(- UU-A)A-CUG -UU-G-GUC- 1321 -UGCG-GUGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--A...... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.curtis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ORGANISM Mobiluncus curtisii. REFERENCE 1 AUTHORS Lassnig,C., Dorsch,M., Wolters,J., Schaber,E., Stoeffler,G. and Stackebrandt,E. TITLE Phylogenetic evidence for the relationship between the genera Mobiluncus and Actinomyces JOURNAL FEMS Microbiol. Lett. 65, 17-22 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35241 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53186 isolate_name= BV 345-16 BASE COUNT 277 a 293 c 440 g 308 t 3058 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...NUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGCCGC-AG (---U----- ---------- ---------- 241 --------UG -)CU-GUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G U-CCUU---U -UCUU-U-GG 421 -GAU-AA-CG G--------- ------CU-- G(-GAAA-)C -GGCUUG--C UAAUACN-GG 481 AU-AUUC--- ---------- -------A-A GG-G--U-C- ---ACC-(-- --------GC 541 AA-U------ -)-GGU---- GG-UG----U UU-GGAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GGA---- 661 ----UUGG-U UGG---G-|N UCNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-U|C-GC -ACUGG-G-A 841 (CUGA-GA.. ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..).G-UUGU GAA--CUCC| UUUU-UC-UC 1021 --GC-GAA-- AA-AG-G--- ---------( -----CACAG ---------) ---------- 1081 ---------- -------U-- U----UCGG- A-----U-NN N-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UC- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C AG-CAG-C(- UU-A)A-CUG -UU-N-GUC- 1321 -UGCG-GUGG G-UAC-GGNC N-NNCUU-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -GA-UGC--- ---------- 1681 -(UAU-CC)U ---------- ---------- -G-------- -------UGU -CUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUG.... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .....U-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)---UGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CC-|G 2701 G-GA-CU-C- G-UGA-G--G A-CU-G-CCG --GG(-GU-U AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CUGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-UU -AA-CUC--- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGGGG-G-A G-CG-GU-CG A-AGGU-GGG AUU-GG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.curti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ORGANISM Mobiluncus curtisii. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35241 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86005|g1004276 isolate_name= BV 345-16 BASE COUNT 72 a 68 c 124 g 67 t 4045 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UC- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C AG-CAG-C(- UU-A)A-CUG -UU-G-GUC- 1321 -UGCG-GUGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--A...... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.mulier 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus mulieris str. SV 17J ATCC 35243 (T). ORGANISM Mobiluncus mulieris. REFERENCE 1 AUTHORS Lassnig,C., Dorsch,M., Wolters,J., Schaber,E., Stoeffler,G. and Stackebrandt,E. TITLE Phylogenetic evidence for the relationship between the genera Mobiluncus and Actinomyces JOURNAL FEMS Microbiol. Lett. 65, 17-22 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35243 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53187 isolate_name= SV 17J BASE COUNT 191 a 189 c 281 g 211 t 3504 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...NUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAG 121 C--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAGCCUC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGGU GGA....... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .....AUAUU G-CACAAU-- GG-AC-(GGA A)-GUU-UAA UGCA|-GCGA CGCU-GC-GU 961 G-G-AA-G-G U-GUC--A-G GC(--CU-CG -G)GG-UUGU GAA--CUCC| UUUU-UC-UC 1021 --GU-GAA-- AA-AG-G--- ---------( -----CAUG- ---------) ---------- 1081 ---------- -------C-- U-UUCGGGU. .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .....GUUGN CC-GGAUUUA -UU-GGGC|G UAAA-GACG- CNG-UAG-GU -G|-GU-UC- 1261 G-UC-GCG|U CUG---UCGU G-AAA-GC-C AG-CAG-C(- UU-A)A-CUG -UU-G-GUC- 1321 -UGCG-GUGG G-UAC-GGUC N-NUCUU-GA GUG-----CG G-UA-GGGGU GGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACA-CUG AC-C------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----UGUN-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -GA-UGC--- ---------- 1681 -(UAU-CC)U ---------- ---------- -G-------- -------UGU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUG.... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .....U-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U....... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.curti4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus curtisii subsp. holmesii ATCC 35242 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus curtisii subsp. holmesii ATCC 35242 (T). ORGANISM Mobiluncus curtisii. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82604|g886882 BASE COUNT 71 a 85 c 124 g 89 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----UGG 1981 UUCC-A--(- GAGA-)-UGG -G-CCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.curti5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus curtisii subsp. curtisii str. BV 345-16 ATCC 35241 (T). ORGANISM Mobiluncus curtisii. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35241 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82603|g886883 isolate_name= BV 345-16 BASE COUNT 71 a 85 c 124 g 89 t 4007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----UGG 1981 UUCC-A--(- GAGA-)-UGG -G-CCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.spA294 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus sp. str. A294. ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus sp. str. A294. ORGANISM Mobiluncus sp. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82605|g886897 isolate_name= A294 BASE COUNT 70 a 84 c 123 g 89 t 4010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----UGG 1981 UUCC-A--(- GAGA-)-UGG -G-CCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGN-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GNCCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ANA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.spA543 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus sp. str. A543. ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus sp. str. A543. ORGANISM Mobiluncus sp. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82607|g886896 isolate_name= A543 BASE COUNT 71 a 84 c 124 g 89 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----UGG 1981 UUCC-A--(- GAGA-)-UGG -G-CCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGN-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mob.spA345 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mobiluncus sp. str. A345. ACCESSION No information KEYWORDS No information. SOURCE Mobiluncus sp. str. A345. ORGANISM Mobiluncus sp. REFERENCE 1 AUTHORS Tiveljung,A.M., Forsum,U. and Monstein,H.-J. TITLE Classification of the genus Mobiluncus based on comparative partial 16S rRNA gene analysis JOURNAL Int. J. Syst. Bacteriol. 46, 332-336 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82606|g886881 isolate_name= A345 BASE COUNT 71 a 84 c 124 g 89 t 4008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ........UG ACA-UA|-C- ---------A ---CUGC--- -GA----UGG 1981 UUCC-A--(- GAGA-)-UGG -G-CCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GG-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-GG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGN-C-AG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCGGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.hordvl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces hordeovulneris. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces hordeovulneris. ORGANISM Actinomyces hordeovulneris. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82448|g1838943 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 306 a 323 c 476 g 321 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-----GG-A U--------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUGCCGG-GC (--UU----- ---------- ---------- 241 --------UU -)GU-UUGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GU|-GA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U UCUCU-U-GG 421 -GAU-AA-CG U--------- ------CC-- A(-GAAA-)U -GGGU-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------U-A CG-C--U-UC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GG-GU----G UG--GAAA-- ---GG----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GCAGG-C-CU --CAG-U--( -----UUUU- ---------) --GU-UG-GG 1081 ---------- -------G-- UUGA-CUUU- A-CUU-A-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-AC-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -AC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-AUGU-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------GUU -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---UCCA--- -GA----GCG 1981 -UGC-A--(- GAGA-)-UGU -G-CGUG--- ---------- ---CA----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 -------UGG U-)------- UG-------- ---------| GGG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GGAG-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGU-U-G-C- GA-UAU-C(G 2881 -UGA)GGUU- ---------- GA-GCUAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CUC 3121 A-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG....... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Abc.phocae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcanobacterium phocae str. M2546/94/1 DSM 10004. ACCESSION No information KEYWORDS No information. SOURCE Arcanobacterium phocae str. M2546/94/1 DSM 10004. ORGANISM Arcanobacterium phocae. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Organism information Culture collection: DSM 10004 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X97049|g1838948 biol_source= lung of common seal isolate_name= M2546/94/1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 311 a 321 c 475 g 304 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAGCCCU-AN (--CU----- ---------- ---------- 241 --------UN -)CU-GGGGU GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCNU-U-GG 421 -GAU-AA-NC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACU-GG 481 AU-AUU---- ---------- -------C-U GC-U--U-CU ---GCC-(-- --------GC 541 AU-------- -)-GGU---G GG-GG----U UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGCA|-GCGA CNCCGGC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-AG-CA 1021 --CU-GAA-- CA-AG-G-CG --AAA----( -----GUUGA G--------) ---G-GU-AG 1081 ---------- -------G-U G-UU-GAAU- A-AGC-G-CC G-GC--UAA- ---------- 1141 ---------- -CUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-GGC- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CUA--- -U-------- 1681 -(UUC-CA)- ---------- ---------- -U-------- -------GGG -UUCUG-UAC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGC--- -GA----CAU 1981 -GCU-A--(- GAGA-)-UAG -U-GUGC--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Abc.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697. ACCESSION No information KEYWORDS No information. SOURCE Arcanobacterium haemolyticum str. 53/W/1 NCTC 9697. ORGANISM Arcanobacterium haemolyticum. REFERENCE 1 AUTHORS Stubbs,S. and Collins,M. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: NCTC 9697 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73952|g437738 Former RDP Sids: Arca.haemo isolate_name= 53/W/1 BASE COUNT 330 a 333 c 505 g 319 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GA AGGCUCC-UG (--CU----- ---------- ---------- 241 --------UG -)CG-GGG-U UGGA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--A C-U--GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---C -UC-U-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACU-AG 481 AU-AUU---- ---------- -------C-U GC-U--U-CU ---GCC-(-- --------GC 541 AU-------- -)-GGN---G GG-GG----U UG--GAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GGA A)-GUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UUUU-AA-CA 1021 --CU-GAA-- CA-AG-G-CG --AAA----( -----GUUGA G--------) ---G-GU-AG 1081 ---------- -------G-U U-GU-GAAU- A-AGC-G-CC G-GC--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUC -CG-G-GGC- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGU AAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CUU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -U-------- -------GGG -UUCUG-UAC 1741 CC--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -GA----UUA 1981 -UGC-A--(- GAGA-)-UGU -G-UGAG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-GCU-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAA)CG CUG-CGGUG- AAUAC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CU -AA-CUC--- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGGGG-G-A G-CG-GA-CG A-AGGU-GGG AUU-AG-CC- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.suis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces suis. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces suis. ORGANISM Actinomyces suis. REFERENCE 1 AUTHORS Ludwig,W., Kirchhof,G., Weizenegger,M. and Weiss,N. TITLE Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 161-165 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S83623 Former RDP Sids: Eub.suis DSM 20639 (T) = ATCC 33144 NB: former name Eubacterium suis BASE COUNT 308 a 328 c 529 g 359 t 2852 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG.... .......... ...C-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAAGGCU-UC (--UUUCU-- ---------- ---------- 241 -----UUUUU -)GA-UUGGA GUGCU----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGGG- UAA--CCU-G C-CCUC---A -ACUG-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GC 481 AU-AUU---- ---------- -------C-U UC-U--G-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---G GU-GG----U UG--GAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GC-(GGA A)-GCU-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUUC| UUUU-GG-UG 1021 --CA-GAA-- CA-AG-G-CU --CGC-A--( -----CUUGG ---------) --GG-UG-GG 1081 ---------- -------U-- U-GA-GGGU- A-UGU-G-CU G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|C CUG---CUGU G-AAA-AC-G CG-GGG-C(- UU-A)A-CUU -CG-C-GCG- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUU-GA GUG-----UG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-UGGAGG- AAUA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--AA-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UUU-CC)- ---------- ---------- -G-------- -------GGG -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---UUGC--- -GA----UAU 1981 -UCC-A--(- GAGA-)-UGG -G-GUAG--- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- UG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---U(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCUCG -UGAAGU-GG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- CG-AC-ACCC -GAA-G-CUC 3121 G-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CG-GU-CG A-AGGU-GGG GUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGC UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.bernrd 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces bernardiae str. LCDC 89-0504 DSM 9152 (T). ACCESSION No information KEYWORDS No information. SOURCE Actinomyces bernardiae str. LCDC 89-0504 DSM 9152 (T). ORGANISM Actinomyces bernardiae. REFERENCE 1 AUTHORS Funke,G., Pascual Ramos,C., Fernandez-Grayzabal,J.F., Weiss ,N. and Collins,M.D. TITLE Description of human-derived Centers for Disease Control Coryneform group 2 bacteria as Actinomyces bernardiae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 57-60 (1995) STANDARD No information COMMENTS Organism information Culture collection: CDC 89-0504 DSM 9152 (T), DSM 9152 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79224|g639800 Former RDP Sids: Act.birnad DSM 9152 (T) = CCUG 33419 isolate_name= LCDC 89-0504 BASE COUNT 303 a 313 c 465 g 301 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--A--U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AAGCUAC-AG (--CU----- ---------- ---------- 241 --------UC -)CU-GUGGU GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCUU---G -UCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-U GC-U--U-UC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GG-GG----U UG--GAAA-- ---GG----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----C--U- G--GAU---- 661 ----AGGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AG-UA 1021 --CA-GAA-- CA-AG-G-CC ---------( -----UUUUU ---------) --------GG 1081 ---------- -------U-- U-GA-GGGU- A-UGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|C CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUU -CG-G-GGU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGU AAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--AC-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CUU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGC--- -GA----UGU 1981 -GCC-A--(- GAGA-)-UGG -U-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.pyogen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces pyogenes. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces pyogenes. ORGANISM Actinomyces pyogenes. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29552 BASE COUNT 286 a 286 c 457 g 308 t 3039 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UUUGUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--A--U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GA AGCCGGG-KC (--NNU---- ---------- ---------- 241 --------UU -)GU-UUUGG UGGA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAW -AC-GUGAG- UAA--CCU-G C-CCUU---G -UCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-U GC-U--U-UU ---GCC-(-- --------GC 541 AU-------- -)-GGU---G GG-GG----U UG--GNAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GAU---- 661 ----GGGN-- NUG---G-|N CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AG-UA 1021 --CA-GAA-- GA-AG---CA ---------( -----UUUU- ---------) --------UG 1081 ---------- ---------- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 UAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|C CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUU -CG-G-NGU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGNNN NAU-U|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GNNG- -NNUACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CU---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGG -UUCUG-CGC 1741 CG--UA---- --SS-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGC--- -GA----UGU 1981 -GCC-A--(- GAGA-)-UGG -U-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -KAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CCCUU-AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGNAGN-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.pyoge3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces pyogenes. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces pyogenes. ORGANISM Actinomyces pyogenes. REFERENCE 1 AUTHORS Ramos,C.P., Foster,G. and Collins,M.D. TITLE Phylogenetic analysis of the genus Actinomyces based on 16S rRNA gene sequences: description of Arcanobacterium phocae sp. nov., Arcanobacterium bernardiae comb. nov., and Arcanobacterium pyogenes comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 46-53 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79225|g1838947 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 285 a 281 c 452 g 300 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--A--U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GA AGCCGGG-GC (--UUU---- ---------- ---------- 241 --------UU -)GU-UUUGG UGGA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-GUGAG- UAA--CCU-G C-CCUU---G -UCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-U GC-U--U-UU ---GCC-(-- --------GC 541 AU-------- -)-GGU---G GG-GG----U UG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--U- G--GAU---- 661 ----GGGG-- AUG---G-|G CUCAC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AG-UA 1021 --CA-GAA-- GA-AG---CA ---------( -----UUUU- ---------) --------UG 1081 ---------- ---------- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|C CUG---CUGU G-AAA-GA-C CG-GGG-C(- UU-A)A-CUU -CG-G-GGU- 1321 -UGCA-GUGG G-UAC-GGGC A-GACUA-GA GUG-----UG G-UA-GGGGU AAU-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GC-CU---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGG -UUCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------A ---CUGC--- -GA----UGU 1981 -GCC-A--(- GAGA-)-UGG -U-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CCCUU-AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGNAGN-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Jns.denitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Jonesia denitrificans.. ACCESSION No information KEYWORDS No information. SOURCE Jonesia denitrificans. ORGANISM Jonesia denitrificans. REFERENCE 1 AUTHORS Rainey,F.A., Weiss,N. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Cellulomonas, Promicromonospora, and Jonesia and proposal to exclude the genus Jonesia from the family Cellulomonadaceae JOURNAL Int. J. Syst. Bacteriol. 45, 649-652 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83811|g1051152 BASE COUNT 312 a 325 c 475 g 308 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UGACCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGGU UGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---U -UCUU-C-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 GU-AUG---- ---------- -------A-C AU-C--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GG----U GU-GGAAA-- ---GG----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----C--U- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UA 1021 --AG-GAA-- CA-AG-G-CC A-UGA-U--( -----UGUU- ---------) --GU-UGUGG 1081 ---------- -------U-- U-GA-GGGU- A-CUU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---UCGU G-AAA-UC-C CG-AUG-C(- UU-A)A-CGU -CG-G-GCU- 1321 -UGCG-GUGG G-UAC-GGGC A-GGCUG-GA GUG-----CG G-UA-GGGGU GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCACUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-UUG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAU -UCCUG-UAC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|-C- ---------G ---CUAG--- -AU----CGC 1981 -UCC-A--(- GAGA-)-UGG -G-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- U-)------- GG-------- -----A---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-CGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGAG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.A.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.10.2 BIFIDOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.10.2 BIFIDOBACTERIUM_GROUP. ORGANISM 2.16.1.10.2 BIFIDOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.astero 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium asteroides. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium asteroides. ORGANISM Bifidobacterium asteroides. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58730 NB: ATCC number needs to be checked BASE COUNT 299 a 357 c 491 g 267 t 2962 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CC-GGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCCUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCCA---U -GCUU-C-GG 421 -AAU-AG-CU C--------- ------CU-- U(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GCU---- ---------- -------C-C GC-A--C-C- ---GUC-(-- --------GC 541 AU-N------ -)-NAU---- GG-UG----U GG--GAAA-- ---GG----- ---------- 601 --(------- ---GUUUA-- ---)------ ---------| -----C--C- G--GCA---- 661 ----UGGN-- NUG---G-|N GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-GAU-GG) -C-CUGCC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CN| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| NUUU-GA-UU 1021 --GG-GAG-- CA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GN-UC- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -GGCG-CCGG G-UAC-GGGC G-GACUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCNGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--NN-NA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UN-CU-- -------G|G -AU-GU-GGG -GN-NNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-N -N-C-CN--N 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-AUG ACA-UG|-U- ---------G ---CCGG--- -AC----NNN 1981 -CGC-G--(- GAGA-)-CGC -G-NCNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-N A-CC-G-CCG --GG(-GU-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C NUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-N-NCC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUN- AAUGC-GUU- CCC-NGG-CC NNGUA----C 3061 ACACCGCCC- GNC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UNG-C-CN -NA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CC-GU-CU A-AGGN-NAG GUC-CG-CN- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.thphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium thermophilum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium thermophilum. ORGANISM Bifidobacterium thermophilum. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10151|g498636 biol_source= pig feces BASE COUNT 293 a 346 c 500 g 276 t 2961 others ORIGIN 1 .......... .......... .......... ...UUUGUGA GGGGUU(C-G A)U-UCU|-G 61 GCUCAG-NAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CAGGC-AG (--CU----- ---------- ---------- 241 --------NG -)CU-GCCUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCNA---U -GCUC-C-GG 421 -AAU-AG-CU N--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GUG---- ---------- -------C-C GG-G--C-N- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UC----C GG--NAAA-- ---GCU---- ---------- 601 --(------- ----UU---- ---)------ ---------| ----GG--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUNA-A- CUU-G---UU 721 GG-CG-GG-( GU-UAG-GG) -C-CNACC-A A|-GGC-UU- NGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGNN|-GCGA CGNN-GN-NU 961 G-C-GG-G-A U-GGA--G-G CU(--UN--G --)GG-UUGU AAA--CCGN| NUUU-GU-UU 1021 --GG-GAG-- UC-AA-C-C- ---------( -----UNGG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCN-U-NU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-N-GUAG |-GGUG-C-- 1201 CAG-CGUUAU NC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-U-AUN- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCNGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UCCCG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N NAA)---C-G N--AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CG--G 1861 C-A--CA-AG CG-CGG-AG- A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GGC-G--(- NAGA-)-CAN -U-UUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-CGG-GG-A A-CC-G-CCG --GG(-GU-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UUA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-C-G 3121 G-UGG-C-CU -GA-CCA--- ---------- ---------- -----(---- -GUUCU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCUGGG-G-A G-CC-GU-CU A-AGGU-GAG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.coryne 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium coryneforme. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium coryneforme. ORGANISM Bifidobacterium coryneforme. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58733 BASE COUNT 303 a 359 c 502 g 284 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGGGUU(U-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUCUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCCA---U -ACUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 GU-GUU---- ---------- -------C-C GC-A--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- GG-UG----U GG--GAAA-- ---GG----- ---------- 601 --(------- ---GUUUA-- ---)------ ---------| -----C--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| NUUU-GA-UU 1021 --GG-GAG-- CA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GACUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCNGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CCG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-NUG ACA-UG|-U- ---------G ---CCGG--- -AC----GAC 1981 -CGC-G--(- GAGA-)-CGU -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCG- 2281 UG--UUGC-N AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|N 2701 N-AA-CU-C- A-CGG-GG-N A-CC-G-CCG --GG(-GU-U AA)-CCC-N- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGNC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUU-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUN- AAUGC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -NA-CCC--- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CC-GU-CU A-AGGU-GAG GUC-CG-CG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.minimm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium minimum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium minimum. ORGANISM Bifidobacterium minimum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58741 BASE COUNT 318 a 348 c 499 g 289 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUCUAUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -NCGUUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGCC G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CNNA---U -UCUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GCU---- ---------- -------C-C AC-A--U-G- ---ACC-(-- --------UC 541 AU-------- -)-GGG---- AU-UG----U GG--GAAA-- ---GG----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----C--U- G--GAA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACU-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GA-UU 1021 --GG-GAG-- CA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC A-GGCUG-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AC----GGU 1981 -CCC-G--(- GAGA-)-CGG -G-NCCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCG- 2281 UG--UUGC-N AG-CGG---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGA-GN-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C NUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGGGG-G-A G-CC-GU-CU A-AGGU-GAG ACU-CG-UG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gar.vagina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gardnerella vaginalis. ACCESSION No information KEYWORDS No information. SOURCE Gardnerella vaginalis. ORGANISM Gardnerella vaginalis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58744 ATCC 14018 = NCTC 10287 (T) BASE COUNT 309 a 343 c 500 g 313 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUCGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCN A-GUC-GAAC 121 G--------- -----GG--- ---------- ---------- ---------- ---------- 181 ---------- ---------A UCUGACC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGUUG G-U------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCCA---U -GCUC-C-AG 421 -AAU-AG-CU C--------- ------UU-- G(-GAAA-)C -GGGU-G--G UAAUGCU-GG 481 AU-GCU---- ---------- -------C-C AA-C--U-U- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----U GG--GAAA-- ---GU----- ---------- 601 --(------- ---GUUUA-- ---)------ ---------| -----G--U- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGNC-GC-GU 961 G-C-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GA-UU 1021 --GG-GAG-- CA-AG-C-CU ---------( ------UUU- ---------) --------GG 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GC-C CA-UCG-C(- UU-A)A-CGG -UG-G-GNU- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUA-GA GUG-----CA G-UA-GGGGA GAC-U|GGAA 1381 UU-CUCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--CG-CU-- -------G|G -AU-GU-GGG -GC-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCUG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------G ---CCUG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- C--------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-U AC)-CNC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAACG GGU-U-G-C- UU-CAU-G(G 2881 -UGA)CAUG- ---------- GU-GCUAA-U CCCUU-AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.caten2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium catenulatum str. B669 ATCC 27539 (T). ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium catenulatum str. B669 ATCC 27539 (T). ORGANISM Bifidobacterium catenulatum. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27539 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84784 Former RDP Sids: Bif.infan4 isolate_name= B669 NB: former name Bifidobacterium infantis BASE COUNT 138 a 176 c 207 g 121 t 3734 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.catenu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium catenulatum str. B669 ATCC 27539 (T). ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium catenulatum str. B669 ATCC 27539 (T). ORGANISM Bifidobacterium catenulatum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27539 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58732 isolate_name= B669 BASE COUNT 293 a 352 c 495 g 270 t 2966 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUUGUGA GNGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CAGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCCUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N NAGU---AAU -GC-GUGAC- CNA--CCU-G C-CNNA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GCU---- ---------- -------C-C GA-C--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GU-GU----C GG--NAAA-- ---GAU---- ---------- 601 --(------- ----UUC--- ---)------ ---------| ----AU--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- GUA-G---UC 721 GG-CG-GG-( GU-AAC-GG) -C-NNNCC-G A|-GCC-UN- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-CAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-NN-GU 961 G-C-GG-G-N U-GAC--G-G CC(--UN-CG --)GG-UUGU AAA--CCNC| NUUU-GA-UC 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCN-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGN GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCNG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-NNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|N|G-CCU- G-GGGNGUNC 1801 GGC-N---(G CAA)---G-G CN-NNNNCNC -AAA-GAAAU UG-ANGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GC-GGA -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GNCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GN-NCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C GA-CAC---- ---------- ---------- ---G(---UC ---AU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUN|G 2701 G-NA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -NA-CCC--- ---------- ---------- -----(---- -NUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG ACU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.pcaten 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium pseudocatenulatum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium pseudocatenulatum. ORGANISM Bifidobacterium pseudocatenulatum. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84785 BASE COUNT 137 a 176 c 207 g 121 t 3735 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----AGC 1981 -CGU-A--(- GAGA-)-UAU -G-GCCU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAC-G(G 2881 -CGA)CGUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-G-A G-CC-GU-CU A-AGGU-GAG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.dentim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium dentium. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium dentium. ORGANISM Bifidobacterium dentium. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58735 BASE COUNT 301 a 353 c 494 g 270 t 2958 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUCGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCCGGG-GG (--UU----- ---------- ---------- 241 --------CG -)CC-UCCGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCNA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GCU---- ---------- -------C-C GG-U--U-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-UC----C GG--NAAA-- ---GGU---- ---------- 601 --(------- ----UCC--- ---)------ ---------| ----AU--C- G--GUA---- 661 ----UGGG-- AUG---G-|N NUCGN----- -GU|----CC U--AUCA-G- CUU-G---AU 721 GG-NG-GG-( NU-AAC-GG) -C-NNACC-A U|-GGC-UU- CGA------- -----CG-GG 781 N-NG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-NN-NU 961 G-C-GG-N-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| NUUU-GA-UC 1021 --GG-GAG-- CA-AG-C-CC ---------( -----UUCG- ---------) --------GG 1081 ---------- -------G-- U-GA-GUGU- A-CCC-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -N|-NN-UC- 1261 G-UC-GNN|U CCG---GUGU G-AAA-GC-C CA-UCG-C(- UU-A)A-CGG -UG-G-NNC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GNAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GN---G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------NGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-NUG ACA-UG|-U- ---------U ---CCNG--- -AC----GGC 1981 -CGU-A--(- GAGA-)-UAC -G-GNN---- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CGG-GN-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUN- AAUGC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- GUC-AAG--- --NCA-UGAA A--GU-GGG- NA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCN-- ---------- ---------- -----(---- -UCUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.adoles 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium adolescentis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium adolescentis. ORGANISM Bifidobacterium adolescentis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58729 BASE COUNT 301 a 364 c 490 g 282 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNNUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -NAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CGGCUNG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCGGC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GCU---- ---------- -------C-C AG-U--U-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-UC----U GG--GAAA-- ---GAU---- ---------- 601 --(------- ----UCU--- ---)------ ---------| ----AU--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CCNCC-A U|-GGC-UU- CGA------- -----CG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UAA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GA-CU 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCGG ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-NUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GNCUU-GA GUG-----CG G-UA-GGGNA GAC-U|GGAA 1381 UU-CCNGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCCG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-N -N-C-CN--N 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- ACA----GGC 1981 -CCC-A--(- GAGA-)-UGG -G-NNN---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----N---| CGG-GN-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 N-AA-CU-C- A-CGG-GN-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CCU-C(G 2881 -UGA)GGGG- ---------- GA-GCGGA-U CCCUU-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUN- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -NA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU A-AGGU-GAG NCU-CG-UG- AUN-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.angula 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium angulatum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium angulatum. ORGANISM Bifidobacterium angulatum. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84775 BASE COUNT 140 a 175 c 204 g 118 t 3739 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......A--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----AGC 1981 -CCC-A--(- GAGA-)-UGG -G-GCCU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-C- C)-GACUCCA -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUN-AAG--- --UNA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGNNNG-G-A G-CC-GU-CU N-AGGU-GAG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.bifid5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium bifidum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium bifidum. ORGANISM Bifidobacterium bifidum. REFERENCE 1 AUTHORS Yoon,J.-H., Kim,W.Y., Kang,K.H., Lee,S.T. and Park,Y.-H. TITLE Sequence analysis of 16S rRNA genes from two ribosomal RNA operons of Bifidobacterium bifidum JOURNAL Nucleic Acids Res. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25952|g808106 BASE COUNT 311 a 369 c 517 g 291 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -GCUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GUG---- AU-UG----U GG--GAAA-- ---GAU---- ---------- 601 --(------- ----UCU--- ---)------ ---------| ----AU--C- G--GCG---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UU 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--CG-CU-- -------G|G -AU-GU-GGG -GC-ACG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GCC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.bifid4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium bifidum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium bifidum. ORGANISM Bifidobacterium bifidum. REFERENCE 1 AUTHORS Yoon,J.-H., Kim,W.Y., Kang,K.H., Lee,S.T. and Park,Y.-H. TITLE Sequence analysis of 16S rRNA genes from two ribosomal RNA operons of Bifidobacterium bifidum JOURNAL Nucleic Acids Res. in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U25951|g808105 (bases 1 to 1448) BASE COUNT 301 a 360 c 503 g 284 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -GCUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GUG---- AU-UG----U GG--GAAA-- ---GAU---- ---------- 601 --(------- ----UCU--- ---)------ ---------| ----AU--C- G--GCG---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UU 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--CG-CU-- -------G|G -AU-GU-GGG -GC-ACG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GCC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.bifidu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium bifidum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium bifidum. ORGANISM Bifidobacterium bifidum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M38018 ATCC 29521 (T) = DSM 20456 BASE COUNT 314 a 369 c 515 g 303 t 2875 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -GCUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GUG---- AU-UG----U GG--GAAA-- ---GAU---- ---------- 601 --(------- ----UCU--- ---)------ ---------| ----AU--C- G--GCG---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UU 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGNN-N-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-CA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--CG-CU-- -------G|G -AU-GU-GGG -GC-ACG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AACNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GCC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U AA)-CNC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- NUU-GGGA-C 3301 U---AAG... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.bifid3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium bifidum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium bifidum. ORGANISM Bifidobacterium bifidum. REFERENCE 1 AUTHORS Ludwig,W., Kirchhof,G., Weizenegger,M. and Weiss,N. TITLE Phylogenetic evidence for the transfer of Eubacterium suis to the genus Actinomyces as Actinomyces suis comb. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 161-165 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S83624 DSM 20456 = ATCC 29521 (T) BASE COUNT 317 a 377 c 525 g 304 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GUGAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAUG--- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---G -ACUC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GUG---- AU-UG----U GG--GAAA-- ---GAU---- ---------- 601 --(------- ----UCU--- ---)------ ---------| ----AU--C- G--GCG---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UU 1021 --GG-GAG-- CA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GC-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--CG-CU-- -------G|G -AU-GU-GGG -GC-ACG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GCC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAGC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.bifid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium bifidum.. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium bifidum. ORGANISM Bifidobacterium bifidum. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84777 BASE COUNT 132 a 177 c 210 g 120 t 3737 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCNUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAC 1981 -GCC-A--(- GAGA-)-UGG -C-GUUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-U-G-C- GA-CAU-G(G 2881 -CGA)CAUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGAGCC- (UGCAAC-C- C)-GGCUCCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UNA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU N-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.lactis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium lactis.. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium lactis. ORGANISM Bifidobacterium lactis. REFERENCE 1 AUTHORS Meile,L., Rueger,U., Gut,C., Dasen,M. and Tueber,M. TITLE tolerant species isolated from commercially fermented milk Bifidobacterium lactis sp. nov., a new relatively oxygen JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89513|g899222 (bases 1 to 1518) BASE COUNT 307 a 378 c 538 g 295 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCCUGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GUCGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCUG---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUACC-GG 481 AU-GCU---- ---------- -------C-C AU-C------ -------(-- --------GC 541 AU-------- -)-GGU---- GG-GG----U GG--GAAAU- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GCA---U 661 GGGAUGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-GAU-GG) -C-CCACC-A A|-GGC-GU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GC-C-- CGG-C|C-AC -AUU-G-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-UC 1021 --AA-GGG-- CA-AG-G-CA --CGG-U--( -----UUCG- ---------) --GC-CG-UG 1081 ---------- -------U-- U-GA-GUGG- A-UUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- CU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-G|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-CG- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CC---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGG -UCCCG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-CGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AU----CGC 1981 -CGU-G--(- GAGA-)-CAC -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--GCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-UGU-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU ----G-CC-C CUCAC-G--C -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAGC CGU-G-G-C- GA-CAC-G(G 2881 -UGA)CGUG- ---------- GG-GCGGA-U CGCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CG -AC-CC---- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU A-AGGU-GAG ACU-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG-C--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium sp. ORGANISM Bifidobacterium sp. REFERENCE 1 AUTHORS Kok,R.G., de Waal,A., Weenk,G. and Hellingwerf,K.J. TITLE Specific detection of a Bifidobacterium strain in infant faeces JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89111|g895745 (bases 1 to 1528) BASE COUNT 309 a 378 c 540 g 300 t 2849 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCCUGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU--UCGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCUG---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUACC-GG 481 AU-GCU---- ---------- -------C-C GC-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----U GG--GAAAU- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-GAU-GG) -C-CCACC-A A|-GGC-GU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUU-GU-UC 1021 --AA-GGG-- CA-AG-G-CA --CGG-U--( -----UUCG- ---------) --GC-CG-UG 1081 ---------- -------U-- U-GA-GUGG- A-UUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- CU-A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-C--GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CC---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGG -UCCCG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CG--N 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AU----CGC 1981 -CGU-G--(- GAGA-)-CAC -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--GCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-UGU-GG-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG CGG-U-G-C- GA-CAC-G(G 2881 -UGA)CGUG- ---------- GG-GCGGA-U CGCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- UA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -GA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU A-AGGU-GAG ACU-CG-UG- AUU-GGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.animal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium animalis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium animalis. ORGANISM Bifidobacterium animalis. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70971|g287930 biol_source= rat feces BASE COUNT 249 a 350 c 496 g 270 t 3011 others ORIGIN 1 .......... .......... .......... .......... ..GGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GNAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -NCUGGN-NG (-CCU----- ---------- ---------- 241 --------NN -)CU-GCCNG GN-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAU -GC-GUGAC- CAA--CCU-G C-CCUG---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GNGU-G--G UAAUACC-NN 481 AU--CU---- ---------- -------C-C NC-C--N--- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-NN----U GG--GAAAU- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|N GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-GAU-GG) -C-CCACC-A A|-GGC-GU- UGA------- -----CG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-N---NU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU NAA--CCGC| NUUU-GU-UC 1021 --NA-GGG-- CN-AG-G-CA --CGG-C--( -----UUCGG ---------) --GC-CG-NG 1081 ---------- -------U-- U-GA-GUGG- A-UUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUN -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- U--A)A-CGG -UG-G-AUC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUN-G AUNC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CN---- -U-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGG -UCCUG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUN -NNA-GNNAU UG-ACGGG-N -G-C-C---G 1861 C-A--CN-AG CGGNNG-AGC A-U-GC-GGA -UUNAUU-CG -(AUGNNN-C G)--CGAAGN 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------G ---CCGG--- -AU----CGC 1981 -CCC-G--(- GAAA-)-CGG -G-NNGU--- G--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGNG-C--GC NACCC-UC-G |-CC--GCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UN ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- A-UGU-GG-G A-CC-G-CCG --GG(-GU-C NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUNC-G-UC -CA--GGGC- 2821 U-UCN-CG-C AUG--CUNCN AUGGC-C-GG -UA--CAACG CGA-U-G-C- GA-CAC-G(G 2881 -UGA)CGUG- ---------- GG-GCGGA-U CGCUG-AAAA -CC-N-GNC- UCNGUUCGGA 2941 U-CGCAGUC- (UGCNAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCNC- NUN-NAG--- --NNN-UNAA A--GU-GGG- UA-GC-NCCC -GNA-G-CCG 3121 G-UGG-C-CC -NA-CC---- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU N-AGGU-GAG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.plongl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium pseudolongum subsp. globosum ATCC 25865 (T). ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium pseudolongum subsp. globosum ATCC 25865 (T). ORGANISM Bifidobacterium pseudolongum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58736 Former RDP Sids: Bif.globos ATCC 25865 (T) = RU 224 = DSM 20092 NB: former name Bifidobacterium globosum BASE COUNT 297 a 358 c 506 g 285 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCCUGGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCCGG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-NN 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AGC-(-- --------GC 541 AU-------- -)-GCG---- AG-UG----U GG--GAAAG- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGN-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-NNA UGCA|-GCGA CGNC-GC-NU 961 G-C-GG-C-A U-GGA--G-G CC(--NU-CG --)GG-UUGU AAA--CCGC| NUUU-GU-UC 1021 --AA-GGG-- CA-AG-G-CA --CGG-U--( -----UUCG- ---------) --GC-CG-UG 1081 ---------- -------U-- U-GA-GUGG- A-UUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -N|-NN-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CN---- -U-------- 1681 -(UUU-UC)C ---------- ---------- ---------- -------GGG -UCCUG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-AUG ACA-UG|-U- ---------G ---CCGG--- -AC----GCC 1981 -CNC-G--(- GAGA-)-CGU -G-GNNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--GCG- 2281 UG--UUGC-C AG-CNN---- ---------- ---------- ---N(---CC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGU-GG-G A-CC-G-CCG --GG(-NN-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGG-U-G-C- GA-CAC-G(G 2881 -UGA)CGUG- ---------- GG-GCGGA-U CCCUG-AAAA -CC-N-NNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUG- AAUGC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-ACG 3121 G-UGG-C-CN -AA-CC---- ---------- ---------- -----(---- -UUNUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.cunicu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium cuniculi. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium cuniculi. ORGANISM Bifidobacterium cuniculi. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58734 Former RDP Sids: Bif.cunnic NB: former name Bifidobacterium cunniculi BASE COUNT 300 a 356 c 504 g 288 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCGGCCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGCU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CNCA---U -GCAC-C-GG 421 -NAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUACC-GN 481 AU-GUU---- ---------- -------C-C AC-A--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GUG---- AU-UG----U GG--GAAAG- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-C-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UCGU AAA--CCGC| NUUU-GU-UC 1021 --AC-GAG-- CA-AG-G-CA --UCC-U--( -----UUCG- ---------) --GG-GG-UG 1081 ---------- -------U-- U-GA-GUGU- A-GUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GC-C CA-UCG-C(- UU-A)A-CGG -UG-G-GNC- 1321 -UGCG-CCGG G-UAC-GGGC G-GGCUG-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCNGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--NN-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GU-CC---- -U-------- 1681 -(UUU-UC)C ---------- ---------- ---------- -------GGG -UCCCG-UGU 1741 CG--GA---- --GC-(CAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GNA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-NUG ACA-UG|-U- ---------G ---CCGG--- -AC----GCC 1981 -NGU-G--(- GAAA-)-CGC -G-NNNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GN-UCA |---C|A--G 2161 GU-GG-CGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--NCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGU-GG-G A-CC-G-CCG --GN(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG CGA-U-G-C- GA-CAC-C(G 2881 -UGA)GGUG- ---------- GG-GCGGA-U CGCUG-AAAA -CC-G-NNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CN -AA-CCC--- ---------- ---------- -----(---- -GCAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGCG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.magnum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium magnum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium magnum. ORGANISM Bifidobacterium magnum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58740 BASE COUNT 294 a 344 c 489 g 300 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- URGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------A AGNGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCG---U -GCUU-G-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGN-G--G UAAUGCC-NN 481 AU-GCU---- ---------- -------C-C NN-N--N-N- ---GCC-(-- --------UC 541 AU-------- -)-GGC---- CN-GU----C GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----CGGN-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 N-AG-C-CN| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-NN-NU 961 G-C-GG-N-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| NUUU-GU-UC 1021 --AC-GAG-- CA-AG-G-CA --UUC----( -----UUUUU ---------) ---G-GG-UG 1081 ---------- -------U-- U-GA-GUGU- A-GUG-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CUG---GUGU G-AAA-GU-G NN-NCG-C(- UU-A)A-CGG -CG-U-UUU- 1321 -UGCG-CUGG A-UAC-GGGC G-GGCUU-GA GUG-----UG G-UN-GGGGA GAA-C|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGNAG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCN--AU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CN---- -U-------- 1681 -(UUU-UC)C ---------- ---------- ---------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCGG--- -AU----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-NNNNU-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CCG-GN-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-UC-G |-CN--GCG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-CGU-GG-G A-CC-G-CCN --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAC-C(G 2881 -CGA)GGUG- ---------- GG-GCGGA-U CCCUG-AAAA -CC-N-NNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CCG-CGGUN- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCN- NUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AU-CC---- ---------- ---------- -----(---- -UUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.breve8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70973|g499053 CIP 6469 (T) = ATCC 15700 = ATCC 15697 (T) biol_source= human infant feces NB: GenBank entry features table annotation presumed incorrect BASE COUNT 300 a 349 c 495 g 283 t 2949 others ORIGIN 1 .......... .......... .......... ...UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCAUC-GG (--UU----- ---------- ---------- 241 --------GC -)UU-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCCA---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GCU---- ---------- -------C-C AU-C--A-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----U GG--GAAA-- ---GC----- ---------- 601 --(------- ---CUUU--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UN 1021 --GG-GAG-- CA-AG-G-CN --C------( ------UUU- ---------) ------G-UG 1081 ---------- -------U-- U-GA-GUGU- A-CCN-U-UC G-AA--UAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -NG-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GCAUC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACNC -AAA-GAAAU UG-ANGGG-G -G-C-CN--N 1861 C-A--CA-AG CGGNGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-NUNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAG-U(G 2881 -CGA)GCUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCAC- GUC-AAG--- --NCA-UNAA A--GU-GGG- CA-GC-ACCC -NAA-N-CCG 3121 G-UGG-C-CN -NN-NNC--- ---------- ---------- -----(---- -NUUGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.breve7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium breve. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium breve. ORGANISM Bifidobacterium breve. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70972 biol_source= human infant feces NB: GenBank entry features table annotation presumed incorrect BASE COUNT 299 a 355 c 499 g 278 t 2945 others ORIGIN 1 .......... .......... .......... ...UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N GAGU---AAU -GC-GUGAC- CAA--CCU-G C-CCCA---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GCU---- ---------- -------C-C AU-C--A-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----U GG--GAAA-- ---GC----- ---------- 601 --(------- ---CUUU--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CUGCC-A U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-U---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| NUUU-GU-UC 1021 --GG-GAG-- CA-AG-G-CA --C------( ------UUU- ---------) ------G-UG 1081 ---------- -------U-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGCA GAC-U|GGAA 1381 UU-CCCNGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GG-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --CG-(UAA- ---C)G-CG- UUAA-GCAUC C|C|N-CCU- G-GGGAGUAC 1801 GGC-C---(G CAN)---G-G CU-AAAACUC -NAA-GAAAU UG-ACGGG-G -G-C-CN--N 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGGAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-AUG ACA-UG|-U- ---------G ---CCGG--- -AC----NAU 1981 -CGC-N--(- GAGA-)-CGC -G-NUNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GG-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C NUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACN AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAG-C(G 2881 -CGA)GCUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNN- NUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CN -NA-CCC--- ---------- ---------- -----(---- --NCAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-GGA GGC-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.breve 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58731 ATCC 15700 = CIP 6469 (T) = ATCC 15697 (T) biol_source= human infant feces BASE COUNT 316 a 365 c 514 g 305 t 2876 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -GCAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GCU---- ---------- -------C-C AU-C--A-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----U GG--GAAA-- ---GC----- ---------- 601 --(------- ---CUUU--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A U|-GGC-UU- CGA------- -----CG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-GU-UA 1021 --GG-GAG-- CA-AG-G-CA --C------( ------UUU- ---------) ------G-UG 1081 ---------- -------U-- U-GA-GUGU- A-CCU-U-UC G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GU-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| NGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CNN- 2281 UG--UUGC-N AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-NN-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAG-U(G 2881 -CGA)GCUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 U---AAG... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.breve2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium breve.. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium breve. ORGANISM Bifidobacterium breve. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84776 BASE COUNT 134 a 175 c 210 g 120 t 3737 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CAG-U(G 2881 -CGA)GCUG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-NCC--- ---------- ---------- -----(---- -CUUGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANG-G-A G-CC-GU-CU N-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84782 BASE COUNT 134 a 177 c 211 g 120 t 3734 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58738 ATCC 15697 (T) = ATCC 15700 = CIP 6469 (T) biol_source= human infant feces BASE COUNT 277 a 356 c 498 g 284 t 2961 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACNC-NUGCN A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N GAGU---NAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--GAAA-- ---CG----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-U NCG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGN-NAUAUU G-CACNAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUU-NU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCC-N-UU G-AA--UNAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-N-AUC- 1321 -CGCG-CCGN G-UAC-GGGC G-NGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACN-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -N-NNN---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----N---| CGG-GN-UCA |---C|N--G 2161 GU-GG-CGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACNGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANG-G-A G-CC-GU-CU N-AGGU-GAG GCU-CG-UG- ANN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infan6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Bourget,N. and Decaris,B. TITLE Phylogenetic analysis of bifidobacterium strains JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70974 (bases 1407 to 1458) CIP 6469 (T) = ATCC 15700 = ATCC 15697 (T) biol_source= human infant feces NB: updates Bif.infan5 BASE COUNT 150 a 178 c 276 g 159 t 3613 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--GAAA-- ----C----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUNUU G-CACNAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-NU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----NUNA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUN- A-CCC-N-UU G-AA--UNAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUNAU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-C.. .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......CCC -GAA-G-CCG 3121 G-UGG-C-CN -AA-CCC--- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUN-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infan5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Bourget,N. and Decaris,B. TITLE Phylogenetic relationships within the genus bifidobacterium using 16S rDNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70974 ATCC 15697 (T) = ATCC 15700 = CIP 6469 (T) biol_source= human infant feces NB: updated by Bif.infan6 BASE COUNT 131 a 160 c 257 g 151 t 3677 others ORIGIN 1 .......... .......... .......... ...UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAN-GC-- UGGC-GGC-G -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-NUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--GAAA-- ----N----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUNN-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-U NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUNUU G-CACNAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-NU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----NUNA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUN- A-CCC-N-UU G-AA--UNAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUNAU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UN-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-NGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GNNG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-UA CUGACG-C.. .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.indicm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium indicum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium indicum. ORGANISM Bifidobacterium indicum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58737 BASE COUNT 296 a 351 c 491 g 285 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U NAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-NGU---- CU-UC----U GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-UG-GG-( GU-AAC-GG) -N-NNNCC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-NG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UN-CG --)GG-UUGU AAA--CCUN| UUUU-AU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCC-G-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-NGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCN--NN-NA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CCG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUNAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-NNNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----N---| CNG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UN|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-AA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C YUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-N-NNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCNN- NUC-AAG--- --NCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -NUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infan7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70974 ATCC 15697 (T) = ATCC 15700 = CIP 6469 (T) biol_source= human infant feces NB: GenBank entry features table annotation presumed incorrect BASE COUNT 256 a 322 c 456 g 252 t 3090 others ORIGIN 1 .......... .......... .......... ...UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- CCAUCGG-GC (--UU----- ---------- ---------- 241 ---------U -)GC-UUGGU GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--GAAA-- ----C----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-G 901 GGG-AAUNUU G-CACNAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-NU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----NUNA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUN- A-CCC-N-UU G-AA--UNAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUNAU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUU AG-G------ -------AG- C-UAAA-GC- GU-UGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AN-GN-GGG -NN-NNN--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -NNCCG-UGU 1741 CG--GA---- ---C-(GAA- ---C)G-CG- UUAA-GCAUC C|N|G-CCU- N-GGGAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)....AAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGG-)-GG. .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ GG-------- -----G---| NNG-GU-NNA |---C|A--G 2161 GU-GG-NGCA NG|G-UCG-- UCG-UCA|-G C-N---NG-U |GN-C(-GNG .)........ 2221 .....(...A -GU)-CCCGC AA-------- CGAG-C--GC AACNC-UC-G |-CC--CNG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---N(---UN ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C NUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-N-GNC- UCNGUUCGGA 2941 U-CGCAGUC- (UGCNAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -NGCNGC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCN- NUC-AAG--- --UCA-UNAA A--GU-GGG- CA-GC-NCCC -GAA-G-CCG 3121 G-UGG-C-CN -AA-CCC--- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUN-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.infan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium infantis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium infantis. ORGANISM Bifidobacterium infantis. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84783 ATCC 15697 (T) = ATCC 15700 = CIP 6469 (T) biol_source= human infant feces BASE COUNT 134 a 177 c 211 g 120 t 3734 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GAU 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- C--------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.suis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium suis. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium suis. ORGANISM Bifidobacterium suis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58743 BASE COUNT 299 a 356 c 506 g 285 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-NG-GG-( GU-AAC-GG) -C-NNNCC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-NAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCC-G-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GN-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CCG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CNG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- A-CGG-GN-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-N-NNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUGC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.longu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium longum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium longum. ORGANISM Bifidobacterium longum. REFERENCE 1 AUTHORS Frothingham,R., Duncan,A.J. and Wilson,K.H. TITLE Ribosomal DNA sequence of bifidobacteria: implications for sequence-based identification of the human colonic flora JOURNAL Micro. Ecol. Health Dis. 6, 23-27 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M84781 BASE COUNT 133 a 177 c 210 g 119 t 3737 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... ......G--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GA-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGNNG-G-A G-CC-GU-CU N-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.longu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium longum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium longum. ORGANISM Bifidobacterium longum. REFERENCE 1 AUTHORS Leblond-Bourget,N., Philippe,H., Mangin,I. and Decaris,B. TITLE 16S rRNA and 16S to 23S internal transcribed spacer sequence analyses reveal inter- and intraspecific Bifidobacterium phylogeny JOURNAL Int. J. Syst. Bacteriol. 46, 102-111 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U10152|g498637 biol_source= human infant feces BASE COUNT 297 a 352 c 492 g 283 t 2952 others ORIGIN 1 .......... .......... .......... ...UUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAN-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GCAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCG-GG (--CNU---- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-N GAGU---AAU -GC-GUGAC- CNA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GN 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 NU-------- -)-NGU---- CU-UC----U GG--GAAA-- ----C----- ---------- 601 --(------- ----UUU--- ---)------ ---------| ----CG--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCN-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-CNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 GGN-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUN| UUUU-NU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GUNA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCN-N-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-N-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCNG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GCG -GC-CGG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G NAA)-----C GN-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-CGN-AN- A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCUN--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CGG-GG-G A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GNC-AAG--- --UCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-C-G 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU A-AGGU-GAG GC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.pseudo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium pseudolongum subsp. pseudolongum str. PNC-2-9G ATCC 25526 (T). ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium pseudolongum subsp. pseudolongum str. PNC-2-9G ATCC 25526 (T). ORGANISM Bifidobacterium pseudolongum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25526 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58742 ATCC 25526 (T) = DSM 20099 isolate_name= PNC-2-9G BASE COUNT 297 a 350 c 501 g 285 t 2943 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-NU--A ACNC-NUGCN A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCNA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG--NAAA-- ---GC----- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGN----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-CG-GG-( GU-AAC-GG) -C-NNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGN ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCC-N-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCN--GU-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCN- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ANGGG-G -G-N-NN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- A-CNG-GN-C A-CC-G-CCG --GG(-GU-U NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-G-GNC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCN- NUC-AAG--- --NCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -NA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAUG-G-A G-CC-GU-CU N-AGGU-GAG GCU-CG-UG- AUU-GGGU-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bif.longum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bifidobacterium longum. ACCESSION No information KEYWORDS No information. SOURCE Bifidobacterium longum. ORGANISM Bifidobacterium longum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some bifidobacterial species JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58739 BASE COUNT 306 a 359 c 505 g 287 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUGUGG AGGGUU(C-G A)U-UCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CCAUCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -GC-GUGAC- CGA--CCU-G C-CCCA---U -ACAC-C-GG 421 -AAU-AG-CU C--------- ------CU-- G(-GAAA-)C -GGGU-G--G UAAUGCC-GG 481 AU-GUU---- ---------- -------C-C AG-U--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- CU-UC----U GG-NGAAA-- ---GCN---- ---------- 601 --(------- ----UUU--- ---)------ ---------| ----CG--C- G--GUA---- 661 ----UGGG-- AUG---G-|G GUCGC----- -GU|----CC U--AUCA-G- CUU-G---AC 721 GG-NG-GG-( GU-AAC-GG) -C-NNACC-G U|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AU-CG 1021 --GG-GAG-- CA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-GUUU- A-CCC-G-UU G-AA--UAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CCG---GUGU G-AAA-GU-C CA-UCG-C(- UU-A)A-CGG -UG-G-AUC- 1321 -CGCG-CCGG G-UAC-GGGC G-GGCUU-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCCGGU- GUA-ACG(-G UGGAA)-UGU -GU-AGAU-A UC-GGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG A--UG-CU-- -------G|G -AU-GU-GGG -GC-CNG--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGU 1741 CG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------U ---CCCG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCNU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CGG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-AA-CU-C- A-CGG-GN-N A-CC-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAACG GGA-U-G-C- GA-CGC-G(G 2881 -CGA)CGCG- ---------- GA-GCGGA-U CCCUG-AAAA -CC-N-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGG-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUGC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-GGG- CA-GC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANG-G-A G-CC-GU-CU A-AGGU-GAG GCU-CG-UG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.B 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.11 KINEOCOCCUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.11 KINEOCOCCUS_ASSEMBLAGE. ORGANISM 2.16.1.11 KINEOCOCCUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Th.municip 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermocrispum municipale str. MKD 19. ACCESSION No information KEYWORDS No information. SOURCE Thermocrispum municipale str. MKD 19. ORGANISM Thermocrispum municipale. REFERENCE 1 AUTHORS Korn-Wendisch,F., Rainey,F., Kroppenstedt,R.M., Kempf,A., Majazza,A., Kutzner,H.J. and Stackebrandt,E. TITLE Thermocrispum gen.nov. a new genus of the order Actinomycetales and description of Thermocrispum municipale sp. nov. and Thermocrispum agrestse sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 67-77 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79185|g640016 isolate_name= MKD 19 BASE COUNT 310 a 360 c 499 g 284 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGG-UC (--UU----- ---------- ---------- 241 --------U- -)GA-CUGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AG--G AGUG-GCGA- 361 -N-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G U-CCCG---U -ACUG-U-GG 421 -GAU-AA-GC C--------- ------CU-- G(-GGAN-)C -GGGG-U--C UAAUCCC-AC 481 AU-AGG---- ---------- -------A-C AC-U--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----U GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----C--C- G--GUA---- 661 ----UGGG-- GUG---G-|G CCCGC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GCC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGN-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CC 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-G ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -UG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUCCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AC----CGC 1981 -NCC-A--(- GAGA-)-UGG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |A--C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 CG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GNA-G-CCC 3121 A-UGG-N-CU -AA-CCCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UC-GU-CG A-NGGU-GGU ACU-GG-NG- AUU-GGCA-C 3301 G---AAGUC- GUAA-CANNG UAGUC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Th.munici2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermocrispum municipale str. MKD 35 DSM 44069 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermocrispum municipale str. MKD 35 DSM 44069 (T). ORGANISM Thermocrispum municipale. REFERENCE 1 AUTHORS Korn-Wendisch,F., Rainey,F., Kroppenstedt,R.M., Kempf,A., Majazza,A., Kutzner,H.J. and Stackebrandt,E. TITLE Thermocrispum gen.nov. a new genus of the order Actinomycetales and description of Thermocrispum municipale sp. nov. and Thermocrispum agrestse sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 67-77 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44069 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79184|g640017 isolate_name= MKD 35 BASE COUNT 284 a 319 c 462 g 263 t 3048 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGG-UC (--UU----- ---------- ---------- 241 --------U- -)GA-CUGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AG--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G U-CCCG---U -ACUG-U-GG 421 -GAU-AA-GC C--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GC 481 AU-AGG---- ---------- -------A-C AC-U--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----U GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----C--C- G--GUA---- 661 ----UGGG-- GUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AN-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CC 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-G ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCC- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -UG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AC----CGC 1981 -UCC-A--(- GAGA-)-UGG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 CG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -A.....).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Th.agreste 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermocrispum agreste str. CHB77 DSM 44070 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermocrispum agreste str. CHB77 DSM 44070 (T). ORGANISM Thermocrispum agreste. REFERENCE 1 AUTHORS Majazza,A., Kutzner,H.J. and Stackebrandt,E. Korn-Wendisch,F., Rainey,F., Kroppenstedt,R.M., Kempf,A., TITLE Actinomycetales and description of Thermocrispum municipale sp. nov. and Thermocrispum agrestse sp. nov Thermocrispum gen.nov., a new genus of the order JOURNAL Int. J. Syst. Bacteriol. 45, 67-77 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44070 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79183|g640011 isolate_name= CHB77 BASE COUNT 318 a 370 c 522 g 302 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGG-UC (--UU----- ---------- ---------- 241 --------UU -)GN-CUGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUC---A -UCUC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GGG---- ---------- 601 --(------- ---UUUU--- ---)------ ---------| ----UC--C- G--GAU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-CC 1021 --CU-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CUC -UC-G-GCU- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--NC-UA CUGACN-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -UG-GCG--- ---------- 1681 -(-UU-UU)- ---------- ---------- -U-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)U-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AC----CGC 1981 -UCC-A--(- GAGA-)-UGG -G-GCUU--- ---------- ---CC----- --(CUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-N-CU -AA-CCCC-- ---------- ---------- -----(---- -UUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGU GCU-GG-NG- AUU-GGCA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUNC C(GGA-A)GG UGUGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Knc.aurnat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kineococcus aurantiacus. ACCESSION No information KEYWORDS No information. SOURCE Kineococcus aurantiacus. ORGANISM Kineococcus aurantiacus. REFERENCE 1 AUTHORS Takeuchi,M. and Yokota,A. TITLE rRNA gene sequence Phylogenetic analysis of Kineococcus aurantiacus on 16S JOURNAL FEMS Microbiol. Lett. 116, 7-11 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D17527|g473538 BASE COUNT 320 a 335 c 469 g 270 t 2982 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... AAUUCGGGAG AGCAGGGGAC 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .....AA-CC A--------- ------CU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-C CU----C-C- ---ACG-(-- --------GC 541 AU-------- -)-CAU---C GG-UG----A AA--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------CG G--GCU---- 661 ----GGGGG- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC- --GA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CUC -UG-A-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-CACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCCG- -GUCUCUG-- ---------- ---------- ---------G 1501 CAG--UU-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG ---CG-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC C|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUG-AC AUG-CC-UUG ACA-UG|-C- ---------G ---CGGU--- -GG----AAU 1981 -CCC-A--(- GAGA-)-UGG -G-GAUG--- UC-------- ---AU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- UU-------- -----G---| GUC-GA-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---U(---U- ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-CG -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGUG-C-CA -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CU-GU-CG A-AGGU-UGG ACU-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Knc.aurna2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kineococcus aurantiacus. ACCESSION No information KEYWORDS No information. SOURCE Kineococcus aurantiacus. ORGANISM Kineococcus aurantiacus. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77958|g609073 BASE COUNT 316 a 348 c 483 g 266 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AACC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCCU---G -GCUC-U-GG 421 -GAC-AA-CC A--------- ------CU-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--C-C- ---UCG-(-- --------GC 541 AU-------- -)-CGA---G UG-CG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UUGGGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CUC -UG-A-GCU- 1321 -UGCA-GUGG G-UAC-GGGC A-CACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-C- ---------G ---CGGU--- -GG----AAU 1981 -CCC-A--(- GAGA-)-UGG -G-GN-G--- UC-------- ---AU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- UU-------- -----G---| GUC-GC-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UG ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GG--CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GG-G-A N-NN-GU-CG A-AGGU-GGG ACGUGG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ks.auranti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kineosporia aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Kineosporia aurantiaca. ORGANISM Kineosporia aurantiaca. REFERENCE 1 AUTHORS Radajewski,S.M. JOURNAL Thesis, University of Sydney, NSW, Australia (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87110|g1418976 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 349 a 358 c 513 g 280 t 2876 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CUCU---G -ACUC-U-GG 421 -GAU-AA-CC A--------- ------CG-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AU-A--U-G- ---GCC-(-- --------GA 541 GU-------- -)-GGU---C UG-UG----C GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----AGAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AC-C UA-GGG-C(- UU-A)A-CUC -UG-G-GCG- 1321 -UGCA-GUGG G-UAC-GGGC A-GGCUA-GA GUG-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|-G- ---------G ---AUGA--- -AA----ACU 1981 -CGU-A--(- GAGA-)-UAC -G-GGGU--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| GCG-UC-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-AG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 A-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-GGA G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-AGGA-C 3301 G---AAGUC- GNAAC-AAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCAC.... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.1075 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR1075. str. SBR1075. ACCESSION No information KEYWORDS No information. SOURCE str. SBR1075. str. SBR1075. ORGANISM str. SBR1075. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84507|g871628 isolate_name= SBR1075 BASE COUNT 91 a 98 c 137 g 69 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGG-UU--A ACAC-AUNCA A-GUC-GAAC 121 G--GU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AACCAG-AG (--GU----- ---------- ---------- 241 --------UG -)CU-CUGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCA---G -ACUC-U-GG 421 -GAU-AA-CC U--------- ------CG-- G(-GAAA-)C -CGAU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-C--U-U- ---CGG-(-- --------AC 541 AU-------- -)-CCG---A CG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-U-CG| -G-CCU--(G -AGA)-GGGC ----GA-U-- CGG-A|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12 DACTYLOSPORANGIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12 DACTYLOSPORANGIUM_GROUP. ORGANISM 2.16.1.12 DACTYLOSPORANGIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.1 PLM.TEREVASA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.1 PLM.TEREVASA_SUBGROUP. ORGANISM 2.16.1.12.1 PLM.TEREVASA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plm.anulat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pilimelia anulata. ACCESSION No information KEYWORDS No information. SOURCE Pilimelia anulata. ORGANISM Pilimelia anulata. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93189|g1747411 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 327 a 363 c 505 g 273 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUU---G -AGUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ----UUUU-- ---)------ ---------| -----G--U- G--AUC---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C UG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA AUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA UUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GCC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CGGA--- -AA----UCC 1981 -UGU-A--(- GAGA-)-UAC -A-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GA -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plm.terev2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pilimelia terevasa. ACCESSION No information KEYWORDS No information. SOURCE Pilimelia terevasa. ORGANISM Pilimelia terevasa. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93190|g1747412 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 329 a 363 c 511 g 275 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUU---C -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---U GU-GG----G UG--GAAA-- ---GC----- ---------- 601 --(------- ----UUUU-- ---)------ ---------| -----G--U- G--GUG---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GG-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C UG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GUCG A-UAC-GGAC A-GGCUA-GA AUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA UUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GCC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CGGA--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -A-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GA -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plm.tereva 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pilimelia terevasa. ACCESSION No information KEYWORDS No information. SOURCE Pilimelia terevasa. ORGANISM Pilimelia terevasa. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D86946|g1902976 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 332 a 365 c 514 g 280 t 2885 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---C -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UG-UG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ----UUUU-- ---)------ ---------| -----G--U- G--GUG---- 661 ----GGGN-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C UG-CAG-C(- UC-A)A-CUG -UG-G-GNN- 1321 -NGCA-GUCG A-UAC-GGGC A-GGCUA-GA AUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA UUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG--CC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GCC -UUCUG-UGC 1741 CG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CGGA--- -AA----UCC 1981 -UGC-A--(- GAGA-)-UGU -A-GGG---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GA -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.2 APL.PHILIPPINENSIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.2 APL.PHILIPPINENSIS_SUBGROUP. ORGANISM 2.16.1.12.2 APL.PHILIPPINENSIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.phlpp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes philippinensis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes philippinensis. ORGANISM Actinoplanes philippinensis. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93187|g1747341 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 316 a 361 c 496 g 269 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C AC-G--A-G- ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UU-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GGU -UUCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CAC-A--(- GAGA-)-UGU -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.phlpp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes philippinensis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes philippinensis. ORGANISM Actinoplanes philippinensis. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85474|g2326289 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 374 c 517 g 282 t 2872 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC--- (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C AC-G--A-G- ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UU-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GGU -UUCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -CAC-A--(- GAGA-)-UGU -G-GGG---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.phlppn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes philippinensis.. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes philippinensis. ORGANISM Actinoplanes philippinensis. REFERENCE 1 AUTHORS Tamura,T., Nakagaito,Y., Nishii,T., Hasegawa,T., Stackebrandt,E. and Yokota,A. TITLE A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov JOURNAL Int. J. Syst. Bacteriol. 44 (2), 193-203 (1994) STANDARD No information REFERENCE 2 AUTHORS Del Dot,T., Osawa,R. and Stackebrandt,E. TITLE Phascolarctobacterium faecium gen. nov., spec. nov., a novel taxon of the Spormusa group of bacteria JOURNAL Syst. Appl. Microbiol. 16, 380-384 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72864|g535060 BASE COUNT 287 a 314 c 429 g 235 t 3111 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ........GG -ACUU-U-GG 421 -GAU-AA-CC U--------- ------CN-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C AC-G--A-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- UU-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UNA UGCA|-GCGA CGCU-UU-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UN- 1261 G-UC-GCG|U CGA---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)UCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUC AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------N|G -GU-GU-GGG -GA-CCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GGU -NUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CAC-A--(- GAGA-)-UGU -N-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-U... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 ..GA-CU-C- A-NNN-NN-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A NG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GNN- UAAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --NCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.phlpp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes philippinensis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes philippinensis. ORGANISM Actinoplanes philippinensis. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 933-938 (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y. TITLE Phylogeny of Microbispora bispora JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58525|g1483639 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 310 a 354 c 486 g 261 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C AC-G--A-G- ---GUC-(-- --------GC 541 AU-------- -)-GGU---C UU-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GGU -UUCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GCCGGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGU -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes auranticolor. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes auranticolor. ORGANISM Actinoplanes auranticolor. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 933-938 (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y. TITLE Phylogeny of Microbispora bispora JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58526|g1483637 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 312 a 354 c 487 g 258 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C AC-A--C-G- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GUCUG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AG--GAGG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-UC-U CA-GGG-C(- UC-A)A-CUC -UG-A-CAU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GGU -UUCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GCCGGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.3 APL.CYANEUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.3 APL.CYANEUS_SUBGROUP. ORGANISM 2.16.1.12.3 APL.CYANEUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.cyaneu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes cyaneus. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes cyaneus. ORGANISM Actinoplanes cyaneus. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93186|g1747340 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 362 c 490 g 268 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C AU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-UC-U CA-GAG-C(- UC-A)A-CUC -UG-A-CAU- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGC -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CGA- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UCG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- --GNAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.reglar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes regularis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes regularis. ORGANISM Actinoplanes regularis. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93188|g1747342 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 362 c 496 g 264 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---A -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------A-C UU-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- GGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-U UG-GNG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGU -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- --GCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.utahns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes utahensis str. Bayer AG SE50/110 ATCC 31044. ORGANISM Actinoplanes utahensis. REFERENCE 1 AUTHORS Mehling,A., Wehmeier,U. and Piepersberg,W. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 31044 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80823|g587082 ATCC 31044 = CBS 674.73 isolate_name= Bayer AG SE50/110 BASE COUNT 332 a 378 c 520 g 278 t 2868 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-A--G-C- ---UUC-(-- --------GC 541 AU-------- -)-GGA---- GC-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-UC-C CG-AGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCU 1981 -CGC-A--(- GAGA-)-UGC -G-GGG---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 UUAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.4 CAT.JAPONICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.4 CAT.JAPONICUS_SUBGROUP. ORGANISM 2.16.1.12.4 CAT.JAPONICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cat.japon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catenuloplanes japonicus. ACCESSION No information KEYWORDS No information. SOURCE Catenuloplanes japonicus. ORGANISM Catenuloplanes japonicus. REFERENCE 1 AUTHORS Tamura,T., Nakagaito,Y., Nishii,T., Hasegawa,T., Stackebrandt,E. and Yokota,A. TITLE A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 193-203 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14642|g473917 IFO 14176 = ATCC 31637 = DSM 44102 (T) BASE COUNT 253 a 303 c 402 g 232 t 3186 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-C UU-C--CUU- ---CUC-(-- --------GC 541 AU-------- -)-GGG---A UG-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(-ACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-NA--GAAG ---------C 1141 -GCCGGCC-G ACUAC-GUG( CCA--GCAGC CGC......) .......... |......... 1201 ....CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-GCC- 1321 -UGCA-UCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUC -CUCUG-UGC 1741 CG--CA---- --C--(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUU -AAA-UGAAU U......... .......... 1861 .......... .......... .......... .......... .(........ .)....AAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---CGCA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUG- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACAC...... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cat.japon3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catenuloplanes japonicus str. RA330. ACCESSION No information KEYWORDS No information. SOURCE Catenuloplanes japonicus str. RA330. ORGANISM Catenuloplanes japonicus. REFERENCE 1 AUTHORS Tamura,T., Nakagaito,Y., Nishii,T., Hasegawa,T., Stackebrandt,E. and Yokota,A. TITLE A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 193-203 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14644|g473919 isolate_name= RA330 BASE COUNT 240 a 286 c 384 g 215 t 3251 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-C UU-C--UUC- ---CUC-(-- --------GC 541 AU-------- -)-GGG---G UG-GU----C GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(-ACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-G--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CG.......) .......... |......... 1201 .AC-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-GCC- 1321 -UGCA-UCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- N-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG--CC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUC -CUCUG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CN-AANACUA -AGA-UGG.. .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| ....GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cat.japon4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catenuloplanes japonicus str. N381-14. ACCESSION No information KEYWORDS No information. SOURCE Catenuloplanes japonicus str. N381-14. ORGANISM Catenuloplanes japonicus. REFERENCE 1 AUTHORS Tamura,T., Nakagaito,Y., Nishii,T., Hasegawa,T., Stackebrandt,E. and Yokota,A. TITLE A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 193-203 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14643|g473918 IFO 14177 = ATCC 31638 isolate_name= N381-14; N406-14 BASE COUNT 248 a 287 c 386 g 218 t 3237 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-U UN-A--G-G- ---NUC-(-- --------GC 541 AU-------- -)-GGN---- NU-CU----U CG-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCNC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -AUUGGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-UC-C CG-CGG-C(- UC-A)A-CCG -CG-G-GCC- 1321 -UGCA-UCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG--CC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUC -CUCUG-UGC 1741 CG--NC---- --AC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUU -AAA-UGAAU U......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .........A |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACAC...... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cat.japon1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catenuloplanes japonicus. ACCESSION No information KEYWORDS No information. SOURCE Catenuloplanes japonicus. ORGANISM Catenuloplanes japonicus. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93201|g1747351 DSM 44102 (T) = ATCC 31637 = IFO 14176 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 312 a 369 c 503 g 268 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-C UU-C--CUU- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- AU-GG---UC GG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---AUGU G-AAA-UC-C CG-UGG-C(- UC-A)A-CUG -CG-G-GUC- 1321 -UGCA-UUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---CGCA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UC--CUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK140 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK140.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK140. ORGANISM clone SMK140. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78631|g509473 BASE COUNT 55 a 45 c 62 g 49 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........A- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G C-CCCA---G -ACUC-U-GG 421 -GAU-AA-CA C--------- ------AA-- A(-GAAA-)U -UUGU-G--C UAAUACC-GG 481 AU-AU----- ---------- -------C-U CU-U--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GG-GUU---G AG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----UGGG-- AGG---G-|U CUNNC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 CC-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- ------C-GG 781 U-AG-C-UG| -G-UUU--(G -AGA)-GAAC ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK3 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK3.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK3. ORGANISM clone SMK3. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78647|g509490 BASE COUNT 40 a 44 c 78 g 53 t 4161 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...UGCC-AU (--UU----- ---------- ---------- 241 --------CG -)GU-GGUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---C -UCUU-U-GG 421 -GAU-AA-CG U--------- ------UC-- G(-GAAA-)C -GGAC-G--C UAAUACUGGG 481 AU-AUG---- ---------- -------A-C UG-C--G-C- ---UUC-(-- ---------N 541 AU-------- -)-GGG---- GU-GU----G GU-GG-AA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|G CUCGC----- -NG|-----C U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GN 781 U-AG-C-CG| -G-CCU--(G -AGA)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Apl.brasil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinoplanes brasiliensis. ACCESSION No information KEYWORDS No information. SOURCE Actinoplanes brasiliensis. ORGANISM Actinoplanes brasiliensis. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93185|g1747339 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 309 a 365 c 504 g 266 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-A--C-U- ---GAC-(-- --------GC 541 AU-------- -)-GUU---G UG-UG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUC-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --CUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cat.caurul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catenuloplanes caeruleus subsp. azureus DSM 44103. ACCESSION No information KEYWORDS No information. SOURCE Catenuloplanes caeruleus subsp. azureus DSM 44103. ORGANISM Catenuloplanes caeruleus. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93202|g1747347 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 312 a 370 c 510 g 262 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-G--CG-- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UG-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C CG-CGG-C(- UC-A)A-CCG -CG-G-GCC- 1321 -UGCA-GCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---UCGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ccp.caerul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Couchioplanes caeruleus subsp. caeruleus IFO 13939 (T). ACCESSION No information KEYWORDS No information. SOURCE Couchioplanes caeruleus subsp. caeruleus IFO 13939 (T). ORGANISM Couchioplanes caeruleus. REFERENCE 1 AUTHORS Tamura,T., Nakagaito,Y., Nishii,T., Hasegawa,T., Stackebrandt,E. and Yokota,A. TITLE A new genus of the order Actinomycetales, Couchioplanes gen. nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. azureus subsp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 193-203 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14645|g473920 Former RDP Sids: Cat.caerul IFO 13939 (T) = ATCC 33937 = IMET 9248 = DSM 43634 NB: former name Catenuloplanes caeruleus BASE COUNT 244 a 285 c 391 g 224 t 3232 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .........U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C AC-G--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GGG---G UG-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(-ACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGC......) .......... |......... 1201 ....CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU N-AAA-AA-C CG-CGG-C(- UC-A)A-CCG -CG-G-GCC- 1321 -UGCA-GCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-ACG(-G UUAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGUAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUU -AAA-UGNAU U......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... ...GGGU--- ---------- ---CC----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCG-GG-UNA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACAC...... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.5 MMS.ECHINOSPORA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.5 MMS.ECHINOSPORA_SUBGROUP. ORGANISM 2.16.1.12.5 MMS.ECHINOSPORA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.echns3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora echinospora subsp. ferruginea DSM 43141 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora echinospora subsp. ferruginea DSM 43141 (T). ORGANISM Micromonospora echinospora. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92597|g1359935 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 374 c 510 g 265 t 2910 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-U--C-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.rhodrn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora rhodorangea. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora rhodorangea. ORGANISM Micromonospora rhodorangea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92612|g1360070 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 374 c 510 g 265 t 2910 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-U--C-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.echnsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora echinospora subsp. echinospora DSM 43816. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora echinospora subsp. echinospora DSM 43816. ORGANISM Micromonospora echinospora. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92607|g1359933 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 318 a 375 c 507 g 265 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-C--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-U--C-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCAGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGU GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.echns2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora echinospora subsp. pallida DSM 43817 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora echinospora subsp. pallida DSM 43817 (T). ORGANISM Micromonospora echinospora. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92608|g1359934 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 373 c 512 g 266 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-G--C-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-G ACG)--ACCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CGG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.inosit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora inositola. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora inositola. ORGANISM Micromonospora inositola. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92610|g1359944 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 322 a 377 c 515 g 263 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGA---- ---------- -------A-C CU-G--G-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- UC-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-N ACG)--ACCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-ACGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.rosari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora rosaria. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora rosaria. ORGANISM Micromonospora rosaria. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92631|g1360071 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 379 c 514 g 265 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-G--A-C- ---UCC-(-- --------GC 541 AU-------- -)-GGG---- GU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CGG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -GUC-A--(- GAGA-)-UGG -C-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.chersi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora chersinia. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora chersinia. ORGANISM Micromonospora chersinia. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92628|g1359924 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 377 c 514 g 265 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-G--G-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GU-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGNC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.purpur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora purpurea. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora purpurea. ORGANISM Micromonospora purpurea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92595|g1360068 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 379 c 508 g 270 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GCC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAUC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCC-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-U C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -GUC-A--(- GAGA-)-UGG -C-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora aurantiaca. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora aurantiaca. ORGANISM Micromonospora aurantiaca. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92604|g1359920 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 375 c 513 g 268 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-C--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-A-CU UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -GUC-A--(- GAGA-)-UGG -C-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.halphy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora halophytica subsp. halophytica DSM 43026 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora halophytica subsp. halophytica DSM 43026 (T). ORGANISM Micromonospora halophytica. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92601|g1359942 NB: Added by Bergey's to RDP Release 6.0 tree DSM 43026 is Micromonospora chalcea acc. Bact-Nom-Uptodate Micromonospora halophytica subsp. halophytica is DSM 43171 BASE COUNT 320 a 378 c 511 g 267 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GCC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-C--C-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-A-CU UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGAA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.brnnea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora brunnea. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora brunnea. ORGANISM Micromonospora brunnea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92605|g1359922 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 324 a 379 c 505 g 267 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (C-UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AACG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-G--G-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GC-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-ACG|U CGA---CCGU G-AAA-A-CU UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -CAC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GAG A)-UAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.preoch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora purpureochromogenes. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora purpureochromogenes. ORGANISM Micromonospora purpureochromogenes. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92611|g1360069 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 375 c 513 g 265 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C UU-C--U-G- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-A-CU UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -CAC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.halph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora halophytica subsp. nigra DSM 43818 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora halophytica subsp. nigra DSM 43818 (T). ORGANISM Micromonospora halophytica. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92609|g1359943 DSM 43818 (T) = ATCC 33088 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 376 c 512 g 263 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (C-UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-UC-U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-AG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUCUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UUCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGC G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.coerul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora coerulea. ACCESSION No information KEYWORDS No information. SOURCE Micromonospora coerulea. ORGANISM Micromonospora coerulea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92598|g1359928 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 325 a 378 c 507 g 265 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GCC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -CCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C UG-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A-CC CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-ACC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -CAC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGNA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.spG48 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. G48. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. G48. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11306 isolate_name= G48 BASE COUNT 310 a 364 c 507 g 270 t 2925 others ORIGIN 1 .......... .......... .......... .NNUUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G---C (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C UU-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- CG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GGG-C-UCC -(UUCC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-A--C CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC U|U|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUCNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGU -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GGC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fra.sp.L27 4376 bp RNA RNA 02-JUL-1998 DEFINITION Frankia sp. str. L27. ACCESSION No information KEYWORDS No information. SOURCE Frankia sp. str. L27. ORGANISM Frankia sp. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59075 isolate_name= L27 BASE COUNT 312 a 358 c 483 g 263 t 2960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GN-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-NC C--------- ------UG-- G(-GAAA-)C -CGGN-N--C UAAUACC-GA 481 AU-AAG---- ---------- -------A-C UC-C--U-G- ---ANC-(-- --------GC 541 AU-------- -)-GGU---- CG-GG----A GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UNC -(UACN)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -N|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AN-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCNA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCNN- -NNNUCUN-- ---------- ---------- ---------G 1501 GCC--NA-UA CUGACG-CUG AG-G------ -------AG- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACU 1981 -GUC-A--(- GAGA-)-UGG -C-ANGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- A-UCG-AA-G A-CU-G-CCG --GN(-NU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-NNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-NGN-NC UUGUA----C 3061 ACACCGCNC- NUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.6 MICROMONOSPORA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.6 MICROMONOSPORA_ASSEMBLAGE. ORGANISM 2.16.1.12.6 MICROMONOSPORA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sp.yamansh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirilliplanes yamanashiensis str. YU127-1 IFO 15828. ACCESSION No information KEYWORDS No information. SOURCE Spirilliplanes yamanashiensis str. YU127-1 IFO 15828. ORGANISM Spirilliplanes yamanashiensis. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M., Nonomura,H., Yokota,A. and Hatano,K . TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47, 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63912|g971123 Ref 1: erratum Int. J Syst Bacteriol 1997 Jul;47(3):920 IFO 15828 = DSM 44325 (T) isolate_name= YU127-1 BASE COUNT 328 a 381 c 515 g 281 t 2871 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---U -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUUC--- ---------- -------A-C UA-C--A-G- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCG---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GC--UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C CG-CGG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GCG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AA-CCU--- ---------- 1681 -(-CU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UC-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---CGGA--- -AA----UCU 1981 -CAC-A--(- GAGA-)-UGU -G-GGG---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGUC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCGCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.olivas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora olivasterospora str. MK70 DSM 43868 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora olivasterospora str. MK70 DSM 43868 (T). ORGANISM Micromonospora olivasterospora. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 43868 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92613|g1360066 DSM 43868 (T) = ATCC 21819 isolate_name= MK70 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 318 a 378 c 517 g 265 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------A-C UG-C--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA-AC-C CG-CGG-C(- UC-A)A-CUG -CG-G-GCC- 1321 -UGCA-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-G- ---------C ---CGGA--- -AA----UCC 1981 -UCC-A--(- GAGA-)-UGG -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.carbo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora carbonacea subsp. aurantiaca str. DSM 43815 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora carbonacea subsp. aurantiaca str. DSM 43815 (T). ORGANISM Micromonospora carbonacea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 43815 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92606|g1359926 isolate_name= DSM 43815 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 314 a 371 c 511 g 263 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CU-U--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCG- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mms.carbon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Micromonospora carbonacea subsp. carbonacea DSM 43168 (T). ACCESSION No information KEYWORDS No information. SOURCE Micromonospora carbonacea subsp. carbonacea DSM 43168 (T). ORGANISM Micromonospora carbonacea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92599|g1359923 DSM 43168 (T) = NRRL 2972 = KCC A-0139 = JCM 3139 = ATCC 27114 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 377 c 514 g 266 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-ACA---- ---------- -------A-C CU-U--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGCA--- -AA----ACC 1981 -UCC-A--(- GAGA-)-UGG -G-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctl.ferrug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catellatospora ferruginea. ACCESSION No information KEYWORDS No information. SOURCE Catellatospora ferruginea. ORGANISM Catellatospora ferruginea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93199|g1747350 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 320 a 375 c 512 g 271 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUG---G -ACUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUC---- ---------- -------C-A CG-C--UUC- ---AUC-(-- --------GC 541 AU-------- -)-GGU---G GU-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGG---CUGU G-AAA-AC-C CG-UGG-C(- UC-A)A-CUG -CG-G-CAU- 1321 -UGCA-GCCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GCU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---CGCA--- -AA----ACU 1981 -UCC-A--(- GAGA-)-UGG -G-AGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.7 CTL.CITREA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.7 CTL.CITREA_SUBGROUP. ORGANISM 2.16.1.12.7 CTL.CITREA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctl.citre2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catellatospora citrea. ACCESSION No information KEYWORDS No information. SOURCE Catellatospora citrea. ORGANISM Catellatospora citrea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93198|g1747349 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 317 a 366 c 514 g 281 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-- C-CCCU---G -GCUU-U-GG 421 -GAU-AA-CC A--------- ------UC-- G(-GAAA-)C -GGUG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CU-U--UUU- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- UU-UU---GG UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CGU---CCGU G-AAA-AC-C UG-GGG-C(- UC-A)A-CUC -CA-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGUU--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctl.citre3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catellatospora citrea subsp. citrea IFO 14495. ACCESSION No information KEYWORDS No information. SOURCE Catellatospora citrea subsp. citrea IFO 14495. ORGANISM Catellatospora citrea. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85477|g2326292 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 325 a 368 c 519 g 284 t 2880 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)-G-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -GCUU-U-GG 421 -GAU-AA-CC A--------- ------UC-- G(-GAAA-)C -GGUG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CU-G--CGG- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CUGGUU---G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CGU---CCGU G-AAA-AC-C UG-GGG-C(- UC-A)A-CUC -CA-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGUU--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUG---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-U---CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-N-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGC--GUAC C(GGA-A)GG UGCGGC--UG GAUCACC... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctl.citrea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catellatospora citrea. ACCESSION No information KEYWORDS No information. SOURCE Catellatospora citrea. ORGANISM Catellatospora citrea. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93197|g1747348 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 318 a 368 c 514 g 278 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCU----G -GCUU-U-GG 421 -GAU-AA-CC A--------- ------UC-- G(-GAAA-)C -GGUG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CU-G--CGG- ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-UU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CGU---CCGU G-AAA-AC-C UG-GGG-C(- UC-A)A-CUC -CA-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUA-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-CGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------C ---CGUU--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GG-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ctl.tsuoen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catellatospora tsunoense. ACCESSION No information KEYWORDS No information. SOURCE Catellatospora tsunoense. ORGANISM Catellatospora tsunoense. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium, and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46 (3), 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93200|g1747352 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 309 a 362 c 507 g 274 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---G -CCUC-U-GG 421 -GAU-AA-CU G--------- ------UC-- G(-GAAA-)C -GAUG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A CU-U--GGG- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-UG---UG UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UC- 1261 A-UU-GCG|U CGU---CGGU G-AAA-AC-C CG-UGG-C(- UU-A)A-CUG -CG-G-GCU- 1321 -UGCC-GACG A-UAC-GGGU G-GGCUG-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|-A- ---------C ---UCGA--- -AA----ACU 1981 -CGC-A--(- GAGA-)-UGC -G-GGG---- ---------- --UCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- --GUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.C.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.12.8 DCT.AURANTIACUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.12.8 DCT.AURANTIACUM_SUBGROUP. ORGANISM 2.16.1.12.8 DCT.AURANTIACUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.vinac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium vinaceum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium vinaceum. ORGANISM Dactylosporangium vinaceum. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D86939|g1902970 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 323 a 368 c 521 g 277 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AAAG ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G---C (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-G--ACU- ---GCG-(-- --------GC 541 AU-------- -)-CGU---G GU-UU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------G ---CGCU--- -AA----AGC 1981 -CGU-G--(- GAGA-)-CAC -G-GUGU--- ---------- ---C------ --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC-UGG AUCACC~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.vinace 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium vinaceum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium vinaceum. ORGANISM Dactylosporangium vinaceum. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93196 BASE COUNT 318 a 371 c 511 g 276 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-G--A-C- ---UCC-(-- --------GC 541 AU-------- -)-CGU---G GU-UU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------G ---CGCU--- -AA----AGC 1981 -CGU-G--(- GAGA-)-CAC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.matsuz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium matsuzakiense. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium matsuzakiense. ORGANISM Dactylosporangium matsuzakiense. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93193 BASE COUNT 318 a 366 c 511 g 273 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UA-G--A-C- ---UGG-(-- --------GC 541 AU-------- -)-CGU---G GU-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------G ---CGCU--- -AA----AGC 1981 -CGU-G--(- GAGA-)-CAC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGN GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium "salmoneum". ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium "salmoneum". ORGANISM Dactylosporangium "salmoneum". REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93195 BASE COUNT 319 a 372 c 512 g 274 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-C--CUA- ---GCG-(-- --------GC 541 AU-------- -)-CGU---U GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------G ---CGCU--- -AA----AGC 1981 -CGC-G--(- GAGA-)-CAC -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUAGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.auran2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium aurantiacum str. D-748 DSM 43157 (T). ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium aurantiacum str. D-748 DSM 43157 (T). ORGANISM Dactylosporangium aurantiacum. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 43157 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93191 DSM 43157 (T) = KCC A-0083 = IFO 12592 = ATCC 23491 isolate_name= D-748 BASE COUNT 319 a 366 c 513 g 278 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-C--UCG- ---GCG-(-- --------GC 541 AU-------- -)-CGU---C GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGA CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------G ---CGCU--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.auran3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium aurantiacum str. D-748 IFO 12592. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium aurantiacum str. D-748 IFO 12592. ORGANISM Dactylosporangium aurantiacum. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85480|g2326295 IFO 12592 = KCC A-0083 = ATCC 23491 = DSM 43157 (T) isolate_name= D-748 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 323 a 372 c 520 g 282 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-NC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-C--UCG- ---GCG-(-- --------GC 541 AU-------- -)-CGU---C GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CN(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---UUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------G ---CGCU--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.auran4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium aurantiacum str. D-748 ATCC 23491. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium aurantiacum str. D-748 ATCC 23491. ORGANISM Dactylosporangium aurantiacum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 933-938 (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y. TITLE Phylogeny of Microbispora bispora JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23491 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58528|g1483640 ATCC 23491 = KCC A-0083 = IFO 12592 = DSM 43157 (T) isolate_name= D-748 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 301 a 350 c 493 g 266 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-C--UCG- ---GCG-(-- --------GC 541 AU-------- -)-CGU---C GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUUU- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GCCGGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------G ---CGCU--- -AA----AGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AUG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-C-G 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.thailn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium thailandense. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium thailandense. ORGANISM Dactylosporangium thailandense. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Intragenetic relationships of the actinomycete genus Micromonospora JOURNAL Int. J. Syst. Bacteriol. 46, 383-387 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92630|g1359615 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 319 a 368 c 507 g 275 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUCCA AAACC-GA-C 121 ---GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-U--UCC- ---GCG-(-- --------GC 541 AU-------- -)-CGU---G GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GC-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGAA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.thail2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium thailandense. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium thailandense. ORGANISM Dactylosporangium thailandense. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85481|g2326296 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 322 a 372 c 520 g 278 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC--- (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUN---- ---------- -------C-A UG-U--UCC- ---GCG-(-- --------GC 541 AU-------- -)-CGU---- GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium aurantiacum str. D-748 DSM 43157 (T). ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium aurantiacum str. D-748 DSM 43157 (T). ORGANISM Dactylosporangium aurantiacum. REFERENCE 1 AUTHORS Rainey,F.A. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 43157 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72779|g535086 DSM 43157 (T) = KCC A-0083 = IFO 12592 = ATCC 23491 isolate_name= D-748 NB: GB entry has 2 incorrect references associated with this seq. BASE COUNT 286 a 327 c 460 g 255 t 3048 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.UN-CU CGGG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-U--U-C- ---GCG-(-- --------GC 541 AU-------- -)-UGU---G GG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA UGCA|-GCGA CGCN-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUCC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UN- 1261 G-UU-GCG|U NAG---CUGU G-AAA-AC-C CG-CAG-C(- UU-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUN A-UAC-GGGC A-GGCUN-NA GUU-----CG G-UA-GGGGA GAC-A|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUU AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------N|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUN -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- U-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAN-C G)--CGAAGA 1921 A-CCUNA-CC UGG-GU-NUG ACA-UG|-U- ---------A ---CGGN--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -U-GGGU--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- UG-------- ---------| GCC-GUUGCA |---C|A--G 2161 GU-NG-NGCA UN|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--UGN- 2281 UG--UUGC-C NG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AU-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UNA)GGUN- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- AUAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GACCCCG -UGAAGU-AG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUN-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UNGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.fulvum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium fulvum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium fulvum. ORGANISM Dactylosporangium fulvum. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93192 BASE COUNT 317 a 367 c 512 g 279 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-- C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-U--CGU- ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGC- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------U ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(G....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.roseum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium roseum. ORGANISM Dactylosporangium roseum. REFERENCE 1 AUTHORS Koch,C., Kroppenstedt,R.M., Rainey,F.A. and Stackebrandt,E. TITLE 16S ribosomal DNA analysis of the genera Micromonospora, Actinoplanes, Catellatospora, Catenuloplanes, Couchioplanes, Dactylosporangium and Pilimelia and emendation of the family Micromonosporaceae JOURNAL Int. J. Syst. Bacteriol. 46, 765-768 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93194 BASE COUNT 316 a 364 c 513 g 279 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCGCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-C C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-U--CGU- ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------U ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GGC-GC-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.fulvu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium fulvum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium fulvum. ORGANISM Dactylosporangium fulvum. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D86942|g1902973 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 321 a 369 c 518 g 286 t 2882 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-NC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UG-U--CGU- ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG--CC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------U ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUCU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.roseu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium roseum. ORGANISM Dactylosporangium roseum. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D86941|g1902972 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 321 a 367 c 519 g 287 t 2882 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-A ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GN-GC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UG-U--CGU- ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG--CC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------U ---CGGU--- -AA----UCC 1981 -GNC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUC~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dct.roseu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dactylosporangium roseum. ACCESSION No information KEYWORDS No information. SOURCE Dactylosporangium roseum. ORGANISM Dactylosporangium roseum. REFERENCE 1 AUTHORS Wang,Y., Zhang,Z. and Ruan,J. TITLE A proposal to transfer Microbispora bispora (Lechevalier 1965) to a new genus, Thermobispora gen. nov., as Thermobispora bispora comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 933-938 (1996) STANDARD No information REFERENCE 2 AUTHORS Wang,Y. TITLE Phylogeny of Microbispora bispora JOURNAL Thesis, Institute of Molecular and Cell Biology, National University of Singapore (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58529|g1483641 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 298 a 351 c 493 g 269 t 2965 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GA-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G CCCCUA---G -GCUU-U-GG 421 -GAU-AA-CC C--------- ------UC-- G(-GAAA-)C -GGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UG-U--CGU- ---GUG-(-- --------GC 541 AU-------- -)-CAC---A UG-GU----G UG--GAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----UGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCC-A ACUAC-UUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UU-GCG|U CAG---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -UG-G-GCU- 1321 -UGCA-GCUG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-GCC--- ---------- 1681 -(UCU-CC)- ---------- ---------- -G-------- -------GUU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GCCGGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG UCA-UG|-U- ---------U ---CGGU--- -AA----UCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| GCC-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCA-UCA|-G C-U---CG-U |GU-C(-GUG G)-GAUGU-U 2221 GG-G-(UUAA -GC)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CGA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UCG-AA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13 PROPIONIBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13 PROPIONIBACTERIUM_GROUP. ORGANISM 2.16.1.13 PROPIONIBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13.1 PRP.ACIDIPROPIONICI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13.1 PRP.ACIDIPROPIONICI_SUBGROUP. ORGANISM 2.16.1.13.1 PRP.ACIDIPROPIONICI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.acidi1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium acidipropionici. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium acidipropionici. ORGANISM Propionibacterium acidipropionici. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53221 DSM 20272 = VPI 0402 = NCIMB 8070 = ATCC 4875 BASE COUNT 289 a 307 c 449 g 277 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... ...UAC---U -ACUU-C-GG 421 -GAU-AA-CG C--------- ------UA-- G(-GAAA-)C -UNGU-G--C UAAUACC-GG 481 AU-AUN---- ---------- -------A-G CU-U--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUN---- 661 ----GUNG-- AUG---G-|A CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-G-CA --UUC-U--( ------UUU- ---------) --AG-GG-UG 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UNG-UAG-GC -G|-GU-NG- 1261 --UC-GCG|U CGG---AAGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UN-CU-- -------N|G -GU-GU-GGG -GU-NCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UUGG--- -UA----ACG 1981 -GUC-A--(- GAGA-)-UGG -C-NNCC--- C--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-NG-UGCA UN|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CAC- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-G-G-C- GA-CAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UNAA A--GU-CGG- UA-AC-ACCC -GAA-C-CCG 3121 G-UGG-C-CC -AA-CACG-- ---------- ---------- -----(---- -UNCUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGUGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-UA- AUU-AGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.combes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium combesii. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium combesii. ORGANISM Eubacterium combesii. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34614|g762797 ATCC 25545 = VPI 0136 (T) BASE COUNT 321 a 333 c 487 g 305 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUUCAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- --C|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CNAC---U -UCUU-C-GG 421 -GAU-AA-CG C--------- ------UA-- G(-GAAA-)C -UGGU-G--C UAAUACC-GN 481 AU-AUG---- ---------- -------A-G CU-U--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GN----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---GUUU--- ---)------ ---------| -----G--U- G--GUG---- 661 ----GUGG-- AUG---G-|A CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACN-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGN-C|N-AC -AUUGG-N-A 841 (CUGA-GA-U ACG)--NCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AC-CA 1021 --GG-GGC-- GA-A-GG-CA --UYC-U--( -----UUU-- ---------) --GG-GG-UG 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC NGCGGUG-A) U-A-C-GUAG |-NGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UG- 1261 A-UC-GCG|U CGG---AAGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GNGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNN- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GU-CC---- -A-------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CN--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UUGG--- -UA----ACG 1981 -GUC-A--(- GAGA-)-UGG -C-CNNC--- C--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- -----G---| CCG-GU-UCA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GN)-CCNNC AA-------- CGAG-C--GC AACCC-UC-U |-UC--CAC- 2281 UG--UUGC-C AN-NA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-GUG-NA-G A-CC-G-CCG --GG(-GU-C NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-G-G-C- GA-CAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CACG-- ---------- ---------- -----(---- -UUCUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GUGGGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-UA- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.granul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium granulosum. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium granulosum. ORGANISM Propionibacterium granulosum. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02906|g455049 BASE COUNT 87 a 92 c 122 g 83 t 3992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.UC--CAC- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----KGG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAGUG AGU-U-G-C- GA-CAU-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACUC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CAC--- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GUGGGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.jense1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium jensenii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium jensenii. ORGANISM Propionibacterium jensenii. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53219 DSM 20535 = NCIMB 8071 (T) = ATCC 4868 BASE COUNT 290 a 309 c 453 g 279 t 3045 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UNA--CCU-G C-C-GU---C -ACUU-C-GG 421 -GAU-AA-CG C--------- ------UA-- G(-GAAA-)C -UNGU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--U-N- ---AUN-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UNUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----GUGG-- AU----G-|A CUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UGU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCN|-GNNA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CUGC| UUUC-NC-CA 1021 --GG-GAC-- GA-AG-U-GC --CU-----( -----NUCG- ---------) -----GG-GU 1081 ---------- -------G-- U-GA-CGGU- A-CCU---GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 --UC-NCG|U CGG---AAGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -UG-G-GCG- 1321 -UGCU-UUCG A-UCC-GGGU U-NACUU-GA GGA-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--NU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UN-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UUGG--- -UA----ACG 1981 -GUN-A--(- GAGA-)-UGG -C-UNCC--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------GA U-)------- GG-------- -----G---| CCG-AU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CAC- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UNGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UNAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CN -NA-CCU--- ---------- ---------- -----(---- -NUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-NG-UN- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.thoen1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium thoenii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium thoenii. ORGANISM Propionibacterium thoenii. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53220 DSM 20276 = VPI 0412 (T) = ATCC 4874 BASE COUNT 313 a 332 c 490 g 299 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ....CAUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGCNGN-NU (--UU----- ---------- ---------- 241 --------CG -)GG-G-GUN C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-C-AU---C -ACUU-C-GG 421 -GAU-AA-CG C--------- ------UG-- G(-GAAA-)C -UNGU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GCU-(-- --------GC 541 AU-------- -)NGGU---- -G-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----GUGG-- AU----G-|A CUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UGU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCN|-GCNA CGCC-GN-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-G-GC --CU-----( -----AUCG- ---------) -----GG-GU 1081 ---------- -------A-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUN-A) U-N-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 --UC-GCG|U CGG---AAGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -UG-G-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UN-CU-- -------A|G -GU-GU-GGG -NN-NNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UUGG--- -UA----ACG 1981 -GUC-A--(- GAGA-)-UGG -C-NNCC--- C--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- -----G---| CCG-AU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CAC- 2281 UG--UUGC-U AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CU-G-CCG --GG(-GU-A AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UU -A-AGUC-AU UAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUU-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -UU-CC---- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACN-GG-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.thoeni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium thoenii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium thoenii. ORGANISM Propionibacterium thoenii. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. JOURNAL Unpublished (1993) STANDARD No information COMMENTS DSM 20276 = VPI 0412 (T) = ATCC 4874 BASE COUNT 297 a 313 c 448 g 278 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-C-AU---C -ACUU-C-GG 421 -GAU-AA-CG C--------- ------UG-- G(-GAAA-)C -UNGU-G--C UAAUACC-GG 481 AU-AUC---- ---------- -------A-G CU-C--C-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----GUGG-- AU----G-|A CUCGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 UG-UG-AG-( GU-UGU-GG) -C-UCACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCN|-GCNA CGCC-GN-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-A--CA 1021 --GG-GAC-- GA-AG-G-GC --CU-----( -----AUCG- ---------) -----GG-GU 1081 ---------- -------A-- U-NA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCNGC CGCGGUN-A) U-N-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UG- 1261 A-UC-CCG|U CGG---AAGU C-AAA-AC-U UG-GGG-C(- UU-A)A-CUC -UG-G-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCCGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UN-CU-- -------A|G -GU-GU-GGG -NN-NNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCNG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UUGG--- -UA----ACG 1981 -GUC-A--(- GAGA-)-UGG -C-NNCCC-- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- G--------- ---------| CCG-AU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CAC- 2281 UG--UUGC-N AG-CAA---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CU-G-CCG --GG(-GU-A AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UU -A-AGUC-AU UAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUU-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -UU-CC---- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACN-GG-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.avidum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium avidum. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium avidum. ORGANISM Propionibacterium avidum. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02905|g455048 BASE COUNT 87 a 95 c 125 g 78 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |..U--CAC- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UGUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s13 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s13. str. s13. ACCESSION No information KEYWORDS No information. SOURCE str. s13. str. s13. ORGANISM str. s13. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69317|g1181099 isolate_name= s13 BASE COUNT 69 a 71 c 126 g 80 t 4030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UG- 1261 A-UC-GCG|U CGG---AAGU G-UAA-UC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-CGC 1741 CG--UA---- --S--(UAA- ---C)G-CU- UUAA-GUACC C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Act.israel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinomyces israelii. ACCESSION No information KEYWORDS No information. SOURCE Actinomyces israelii. ORGANISM Actinomyces israelii. REFERENCE 1 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information REFERENCE 2 AUTHORS Stackebrandt,E. and Charfreitag,O. TITLE Partial 16S rRNA primary structure of five Actinomyces species: Phylogenetic implications and development of an Actinomyces israelii-specific oligonucleotide probe JOURNAL J. Gen. Microbiol. 136, 37-43 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53228 NB: DSM 43020 wrong ? BASE COUNT 282 a 295 c 473 g 285 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... ..GGGU--N- NCU|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UNA--CCU-G C-CCUU---G -ACUU-U-GG 421 -GAU-AA-CU N--------- ------CA-- G(-GAAA-)C -UNGG-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CU-N--C-U- ---NCU-(-- --------GC 541 AU-------- -)-NGU---- NG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUN---G-|N CUNGC----- -GG|----CU U--AUCA-G- CUN-G---UU 721 NG-UG-GG-( GU-NGU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GC-CU 1021 --GU-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-AUG-G-GU G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UN- 1261 A-UC-GCG|U CGG---AAGU G-UAA-UC-U UN-GGG-C(- UN-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGNN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--NN-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -NN-NNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CU- NUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UCGG--- -GA----GUG 1981 -CUC-A--(- GAGA-)-UGG -G-UNUN--- CC-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- GG-------- -----G---| UNG-GU-UCA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UN--CAC- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU UAU-G-CC-C NUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGU-G-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCUNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 G-UNG-C-CN -NA-C----- ---------- ---------- -----(---- -CGUUGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGGG-N-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UN- AUU-AGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.acnes2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium acnes. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium acnes. ORGANISM Propionibacterium acnes. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02904|g455047 ATCC 6919 = VPI 0389 (T) = NCTC 737 = DSM 1897 BASE COUNT 86 a 91 c 130 g 80 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.......C- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGU-G-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCG--- ---------- ---------- -----(---- -UUG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG---A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.acnes1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium acnes. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium acnes. ORGANISM Propionibacterium acnes. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information REFERENCE 2 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53218 DSM 1897 = ATCC 6919 = VPI 0389 (T) = NCTC 737 BASE COUNT 277 a 300 c 468 g 284 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUU-U-GG 421 -GAU-AA-CU U--------- ------CA-- G(-GAAA-)C -UGGG-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CU-N--C-U- ---CCU-(-- --------GC 541 AU-------- -)-NGU---- NG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUN---G-|N CUCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 NG-UG-GG-( GU-UGU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GC-CU 1021 --GU-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- N-AUG-G-GU N-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UG- 1261 --UC-GCG|U CGG---AAGU G-UAA-UC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCCG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUACC C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NNG ACA-UG|-G- ---------A ---UCGG--- -GA----GUG 1981 -CUC-A--(- GAGA-)-UGG -G-UNUN--- CC-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U N-)------- GG-------- ----GG---| UNG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCNGC AA-------- CGAG-C--GC AACCC-UU-G |-UN--CAC- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGU-G-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- NA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UNGUA----C 3061 ACACCGCCC- GUC-NAG--- --NCN-UGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -AA-CCG--- ---------- ---------- -----(---- -UNG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.acnes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium acnes. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium acnes. ORGANISM Propionibacterium acnes. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61903 DSM 1897 = ATCC 6919 = VPI 0389 (T) = NCTC 737 BASE COUNT 321 a 337 c 526 g 329 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUCAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGCCCU-GC (--UU----- ---------- ---------- 241 --------UU -)GU-GGGGY GC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUU---G -ACUU-U-GG 421 -GAU-AA-CU U--------- ------CA-- G(-GAAA-)C -UGGG-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CU-C--C-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|A CUCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-UUACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GC-CU 1021 --GU-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-AUG-G-GU A-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UG- 1261 A-UC-GCG|U CGG---AAGU G-UAA-UC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCG- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AG G-UA-GGGGN GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCC--UU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---UCGG--- -GA----GUG 1981 -CUC-A--(- GAGA-)-UGG -G-UGUG--- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ----GG---| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CAC- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GUG-GA-G A-CC-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAGAG AGU-G-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCUCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCG--- ---------- ---------- -----(---- -UUG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AUU-AGGA-C 3301 U---AAGNN- GUAA-CAAGG NAGCN-GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13.2 PRP.FREUDENREICHII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13.2 PRP.FREUDENREICHII_SUBGROUP. ORGANISM 2.16.1.13.2 PRP.FREUDENREICHII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.lymphp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium lymphophilum. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium lymphophilum. ORGANISM Propionibacterium lymphophilum. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02907|g455050 BASE COUNT 92 a 93 c 121 g 82 t 3988 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .G--UUGC-C AG-CAA---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- G-UUA-GA-G A-CC-G-CCG --AG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-C-GG -UA--CAGUC AGU-U-G-C- GA-GCC-U(G 2881 -UAA)GGGU- ---------- UA-GCGAA-U CUGUA-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-UGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUGUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GA-UA- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.freud4 4376 bp RNA RNA 05-AUG-1998 DEFINITION Propionibacterium freudenreichii. subsp. shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium freudenreichii. subsp. shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus. ORGANISM Propionibacterium freudenreichii. REFERENCE 1 AUTHORS Dasen,G., Smutny,J., Teuber,M. and Meile,L. TITLE Classification and identification of propionibacteria based JOURNAL Syst. Appl. Microbiol. 21 (2), 251-259 (1998) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y10819 LOCUS PFY10819 5116 bp DNA BCT 05-AUG-1998 DEFINITION P. freudenreichii subsp. shermanii partial 16S rRNA, 23S rRNA and 5S rRNA genes plus ITS. ACCESSION Y10819 NID g2414571 KEYWORDS 16S ribosomal RNA; 16S rRNA; 23S ribosomal RNA; 23S rRNA; 5S ribosomal RNA; 5S rRNA gene; internal transcribed spacer; ITS. SOURCE Propionibacterium freudenreichii. ORGANISM Propionibacterium freudenreichii Eubacteria; Firmicutes; Actinomycetes; Propionibacteriaceae; Propionibacterium group; Propionibacterium. REFERENCE 1 (bases 1 to 5116) AUTHORS Dasen,G., Smutny,J., Teuber,M. and Meile,L. TITLE Classification and identification of propionibacteria based on ribosomal RNA genes and PCR JOURNAL Syst. Appl. Microbiol. 21 (2), 251-259 (1998) MEDLINE 98369734 REFERENCE 2 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (27-JAN-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND REMARK revised by [3] REFERENCE 3 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (02-JUN-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND REMARK revised by [4] REFERENCE 4 (bases 1 to 2137) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (16-JUL-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND REMARK revised by [5] REFERENCE 5 (bases 1 to 5116) AUTHORS Dasen,G. TITLE Direct Submission JOURNAL Submitted (18-SEP-1997) G. Dasen, ETH, Institute of Food Science, Laboratory of Food Microbiology, Schmelzbergstr. 9, LFO-G24.2, 8092 Zuerich, SWITZERLAND COMMENT On Sep 20, 1997 this sequence version replaced gi:2266739. FEATURES Location/Qualifiers source 1..5116 /organism="Propionibacterium freudenreichii" /strain="DSM 4902" /sub_species="shermanii" /db_xref="taxon:1744" rRNA <1..1510 /gene="16S rRNA" /product="16S ribosomal RNA" gene 1..1510 /gene="16S rRNA" misc_feature 1511..1849 /note="internal transcribed spacer" rRNA 1850..4984 /gene="23S rRNA" /product="23S ribosomal RNA" gene 1850..4984 /gene="23S rRNA" rRNA 4985..5116 /gene="partial 5S rRNA" /product="5S ribosomal RNA" gene 4985..5116 /gene="partial 5S rRNA" BASE COUNT 1118 a 1119 c 1708 g 1143 t 28 others BASE COUNT 336 a 357 c 509 g 308 t 2866 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGGCCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGGUA C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CGU-G C-CCUU---G -ACUU-C-GG 421 -UAU-AG-CU C--------- ------CA-- G(-GAAA-)C -UGGU-G--G UAAUCCC-GA 481 AU-AUG---- ---------- -------A-G CC-U--G-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- UU-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUC---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AU-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UG- 1261 A-UC-ACG|U CGG---AAGU G-AAA-UU-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AU G-UA-GGGGA GAA-U|GGAA 1381 CU-CUCGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CUGG--- -AA----GCG 1981 -UUC-A--(- GAGA-)-UGG -G-CGUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| CUG-GU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CAA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CC-G-CCG --GG(-GC-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.freud3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium freudenreichii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium freudenreichii. ORGANISM Propionibacterium freudenreichii. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53217 DSM 20271 = NCIMB 5959 (T) = NCTC 10470 = ATCC 6207 NB: DeWachter seq188 corrected by oligos (ATCC 6207) BASE COUNT 334 a 354 c 499 g 303 t 2886 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUCAACGG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGGUCC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGGCU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CGU-G C-CCUU---G -ACUU-C-GG 421 -GAU-AG-CU C--------- ------CA-- G(-GAAA-)C -UGGU-G--G UAAUCCC-GA 481 AU-AUG---- ---------- -------A-G CC-U--G-G- ---CCU-(-- --------GC 541 AU-------- -)-NGG---- UC-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- G--GUN---- 661 ----AGGG-- AUC---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-NGA UGCA|-GCNA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AU-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-NA-CGGU- A-GUN-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GU-UG- 1261 A-UC-ACG|U CGG---AAGU G-AAA-UU-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AU G-UA-GGGGA GAA-U|GGAA 1381 CU-CUCGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-NGG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---CUGG--- -AA----GCG 1981 -UUC-A--(- GAGA-)-UGG -G-CGUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| CUG-GU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CAA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CC-G-CNG --GG(-GC-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-N-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AUU-AGGA-C 3301 U---AAG... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.freud1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium freudenreichii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium freudenreichii. ORGANISM Propionibacterium freudenreichii. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Propionibacterium as determined by 16S rRNA sequences Inter- and intrageneric relationships of the genus JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information REFERENCE 2 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53217 DSM 20271 = NCIMB 5959 (T) = NCTC 10470 = ATCC 6207 BASE COUNT 318 a 337 c 488 g 293 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUCAACGG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGGCCU-UU (--NN----- ---------- ---------- 241 --------NN -)GG-GGGUN C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CGU-G C-CCUU---G -ACUU-C-GG 421 -GAU-AG-CU C--------- ------CA-- G(-GAAA-)C -UGGU-G--G UAAUCCC-GA 481 AU-AUG---- ---------- -------A-G CC-U--N-G- ---CCU-(-- --------GC 541 AU-------- -)-NGG---- UC-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- G--GUN---- 661 ----AGGG-- AUC---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-NGA UGCA|-GCNA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU GAA--CCGC| UUUC-AU-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-NA-CGGU- A-GUN-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GU-UG- 1261 --UC-ACG|U CGG---AAGU G-AAA-UU-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AU G-UA-GGGGA GAA-U|GGAA 1381 CU-CUCGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-NGG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CUGG--- -AA----GCG 1981 -UUC-A--(- GAGA-)-UGG -G-CGUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| CUG-GU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CAA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CC-G-CNG --GG(-GC-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UNUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.freude 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium freudenreichii. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium freudenreichii. ORGANISM Propionibacterium freudenreichii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS DSM 20271 = NCIMB 5959 (T) = NCTC 10470 = ATCC 6207 BASE COUNT 319 a 337 c 488 g 288 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. .....AACGG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GGAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGCC-UU (--UN----- ---------- ---------- 241 --------NG -)GG-GGUNC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CGU-G C-CCUU---G -ACUU-C-GG 421 -GAU-AG-CU C--------- ------CA-- G(-GAAA-)C -UGGU-G--G UAAUCCC-GA 481 AU-AUG---- ---------- -------A-G CC-U--G-G- ---CCU-(-- --------GC 541 AU-------- -)-NGG---- UC-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUAU-- ---)------ ---------| -----G--C- G--GUN---- 661 ----AGGG-- AUC---G-|U CUCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCNC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 NGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-NGA UGCA|-GCNA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU GAA--CCGC| UUUC-AU-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-NA-CGGU- A-GUN-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GU-UG- 1261 A-UC-ACG|U CGG---AAGU C-AAA-UU-C CA-GGG-C(- UU-A)A-CUC -UG-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGU U-GACUU-GA GGA-----AU G-UA-GGGGA GAA-U|GGAA 1381 CU-CUCGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-NGG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-G- ---------A ---CUGG--- -AA----GCG 1981 -UUC-A--(- GAGA-)-UGG -G-CGUG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- GG-------- ---------| CUG-GU-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CAA- 2281 UG--UUGC-C AG-CAG---- ---------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CC-G-CNG --GG(-GC-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AGG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CUCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UNUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prp.propio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propionibacterium propionicus. ACCESSION No information KEYWORDS No information. SOURCE Propionibacterium propionicus. ORGANISM Propionibacterium propionicus. REFERENCE 1 AUTHORS Charfreitag,O. and Stackebrandt,E. TITLE Inter- and intrageneric relationships of the genus Propionibacterium as determined by 16S rRNA sequences JOURNAL J. Gen. Microbiol. 135, 2065-2070 (1989) STANDARD No information REFERENCE 2 AUTHORS Charfreitag,O., Collins,M.D. and Stackebrandt,E. TITLE Reclassification of Arachnia propionica as Propionibacterium propionicus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 38, 354-357 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53216 DSM 43307 = IMET 10974 = ATCC 14157 (T) NB: former name Propionibacterium propionicum BASE COUNT 229 a 250 c 351 g 201 t 3345 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .U-AGU-GG) -C-UCACC-A A|-GGC-UN- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......C-- GA-AA-C--- ---------( ----CUUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GCA-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-G--UN- 1261 N-UC-GCG|U CGG---GAGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CCC -UG-A-GCU- 1321 -UGCU-UUCG A-UAC-GGGC N-NACUU-GA GGG-----AG G-UA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UN-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UN-CU-- -------A|G -GU-GU-GGG -GG-NCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -CUCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NNG ACA-UA|-U- ---------G ---CCGG--- -AA----GCG 1981 -UUC-A--(- GAGA-)-UGG -G-CGUG--- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NU U-)------- GG-------- ---------| UCG-GU-NUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CAA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UUG-GA-G A-CC-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU NAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG AGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- NA-GCGAA-U CUCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-NC UNGUA----C 3061 ACACCGCCC- GUC-AAG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-N-NNG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CNU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG....... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lut.japoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Luteococcus japonicus. ACCESSION No information KEYWORDS No information. SOURCE Luteococcus japonicus. ORGANISM Luteococcus japonicus. REFERENCE 1 AUTHORS Tamura,T., Takeuchi,M. and Yokota,A. TITLE Luteococcus japonicus gen. nov., sp. nov., a new gram-positive coccus with LL-diaminopimelic acid in the cell wall JOURNAL Int. J. Syst. Bacteriol. 44, 348-356 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D21245|g487912 BASE COUNT 285 a 283 c 389 g 250 t 3169 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G C......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ...GG----U GU-UGAAA-- ---C------ ---------- 601 --(------- ---UCCG--- ---)------ ---------| --------U- G--GUA---- 661 ----UUGG-- AUG---G-|C CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--G-CC -----C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA -)-GAC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AA-CG 1021 --CA-GAC-- GA-AG---C- ---------( -----GAAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-UGC-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--G.... .........) .........G |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CAG---AAGU G-AAA-UC-U CA-GUG-C(- UU-A)A-CAC -UG-A-GCG- 1321 -UGCU-UCUG A-UAC-GGGC A-GACUA-GA GGA-----AG U-UA-GGGGA GAC-C|GGAA 1381 UU-CCUGGU- GGA-CGU(-G AU...).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 ........A- -GG(CUUA-G AUAC)-CCU- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -AUCCG-UGC 1741 CG--CA---- --UA-(UAA- ---C)G-CA- UUAA-GUA-C C|C|G-CCU- G-GGGAGUAC 1801 GGG-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----ACA 1981 -UUC-A--(- GAGA-)-UGG -A-UGUUC-- A--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- -----U---| CCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- C-AG-C--GC AACCC-UU-- |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --GU(-GU-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-U(G 2881 -UAA)GGGU- ---------- GA-GCUAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAG A--GU-AGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Prf.innocu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Propioniferax innocua. ACCESSION No information KEYWORDS No information. SOURCE Propioniferax innocua. ORGANISM Propioniferax innocua. REFERENCE 1 AUTHORS Pitcher,D.G. and Collins,M.D. TITLE Phylogenetic analysis of some LL-diaminopimelic acid-containing coryneform bacteria from human skin: description of Propionibacterium innocuum sp. nov. JOURNAL FEMS Microbiol. Lett. 68, 295-300 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S93388 Former RDP Sids: Prp.innoc2 NCTC 11082 (T) = DSM 8251 NB: Yokota et al. IJSB 44(3): 579-582 renamed this to Propioniferax innocua former name Propionibacterium innocuum BASE COUNT 331 a 351 c 464 g 276 t 2954 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCN A-GUC-GAAC 121 G--GU-N--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGC--CU (--UU----- ---------- ---------- 241 --------CG -)GG--GUNC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-A C-CCCC---G -ACUU-U-GG 421 -AAU-AA-GG C--------- ------CC-- -(-GAAA-)G -GGNG-U--C UAAUACC-GA 481 AU-GGU---- ---------- -------U-C CA-C--A-G- ---UGG-(-- --------GC 541 AU-------- -)-NCA---- CU-GU----N GC-GAAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AU----G-|A CUNGC----- -GU|----CC U--AUCA-G- UUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCN|-GCNA CGCN-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-U-GU NAA--CCGC| UUUC-NG-CA 1021 --GG-GAC-- GA-AG----- --CU-----( -----NACG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGG---AAGU G-AAA-AC-U CA-GAG-C(- UU-A)A-CUC -UG-A-GCC- 1321 -UGCU-UCCG A-UAC-GGGC U-GACUA-GA GGA-----AG G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCNG- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----ACA 1981 -CCU-A--(- GAGA-)-UAG -G-UNCC--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GG-------- ---------| UCG-GU-NUA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UA-GGG-A UG-AGG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGU-C-GG -UA--CAAUG GGC-U-G-C- GA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CCCAC-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUN-AAG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CN -NA-CC---- ---------- ---------- -----(---- -UNUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-UA- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13.3 MCL.PHOSPHOVORUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13.3 MCL.PHOSPHOVORUS_SUBGROUP. ORGANISM 2.16.1.13.3 MCL.PHOSPHOVORUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tph.whipp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tropheryma whippelii.. ACCESSION No information KEYWORDS No information. SOURCE Tropheryma whippelii. ORGANISM Tropheryma whippelii. REFERENCE 1 AUTHORS Relman,D.A., Schmidt,T.M., MacDermott,R.P. and Falkow,S. TITLE Identification of the uncultured bacillus of Whipple's disease JOURNAL N. Engl. J. Med. 327 (5), 293-301 (1992) STANDARD No information REFERENCE 2 AUTHORS Wilson,K.H., Blitchington,R., Frothingham,R. and Wilson, J.A. TITLE Phylogeny of the Whipple's-disease-associated bacterium JOURNAL Lancet 338 (8765), 474-475 (1991) STANDARD No information REFERENCE 3 AUTHORS Harmsen,D., Heesemann,J., Brabletz,T., Kirchner,T. and Mueller-Hermelink,H.K. TITLE Heterogeneity among Whipple's-disease-associated bacteria JOURNAL Lancet 343, 1288-1288 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29531|g495236 BASE COUNT 46 a 53 c 75 g 51 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| ..G-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-U....(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Frd.antarc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Friedmanniella antarctica. ACCESSION No information KEYWORDS No information. SOURCE Friedmanniella antarctica. ORGANISM Friedmanniella antarctica. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78206|g2102661 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 344 a 369 c 491 g 269 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AU|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---G -ACUU-C-GG 421 -AAU-AC-CA G--------- ------CU-- G(-GAAA-)C -AGCU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CC-U--G-G- ---UCC-(-- --------UC 541 CU-------- -)-GGA---- CU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG---C- ---------( ----CACAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-CC- 1261 G-UC-GCG|U CAG---GAGU G-AAA-AC-U CG-GGG-C(- UU-A)A-CCC -CG-A-GCC- 1321 -UGCU-UUUG A-UAC-GGGC G-GACUA-GA GGG-----AU G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UC-AC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUU -CUCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CU A-AGGU-GGG ACU-GG-CG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcl.spY73 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microlunatus sp. str. Y-73. ACCESSION No information KEYWORDS No information. SOURCE Microlunatus sp. str. Y-73. ORGANISM Microlunatus sp. REFERENCE 1 AUTHORS Yoshimi,Y., Nakamura,K. and Hiraishi,A. TITLE A new gram-positive coccus Microlunatus confertus sp. nov. (temporary title) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50065|g769699 isolate_name= Y-73 BASE COUNT 348 a 367 c 482 g 265 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..GCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G GC---CCA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- NN-|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -ACCGUGAG- CAA--CCU-G C-CCUU---G -ACUC-U-GG 421 -AAU-AA-CA G--------- ------CU-- G(-GAAA-)C -AGCU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--G-A- ---GCG-(-- --------AC 541 AU-------- -)-CGC---C GC-GA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CU 1021 --UC-GAC-- GA-AG---C- ---------( -----GCAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---AAGU G-AAA-AC-U CA-GGG-C(- UU-A)A-CCC -UG-A-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-AACUA-GA GGG-----AU G-UA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-UC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UC CUGACG-CUG AG-A------ -------AGC G-CAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGAU)NNGU -ANGCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GUNAUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-UG-CG- CUU-AGGA-C 3301 U---AAGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcl.phpho2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microlunatus phosphovorus. ACCESSION No information KEYWORDS No information. SOURCE Microlunatus phosphovorus. ORGANISM Microlunatus phosphovorus. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78207|g2102670 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 352 a 362 c 479 g 275 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -AGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-C--G-G- ---CCG-(-- --------AC 541 AU-------- -)-CUG---- CU-GA----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG---C- ---------( -----GCAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGG---AAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-AACUA-GA GGA-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-AGGA-C 3301 U---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGCU... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcl.phpho3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microlunatus phosphovorus str. NM-1. ACCESSION No information KEYWORDS No information. SOURCE Microlunatus phosphovorus str. NM-1. ORGANISM Microlunatus phosphovorus. REFERENCE 1 AUTHORS Nakamura,K., Hiraishi,A., Yoshimi,Y., Kawaharasaki,M., Masuda,K. and Kamagata,Y. TITLE Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge JOURNAL Int. J. Syst. Bacteriol. 45, 17-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26169|g442469 isolate_name= NM-1 BASE COUNT 346 a 359 c 468 g 271 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -AGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-C--G-G- ---CCG-(-- --------AC 541 AU-------- -)-CUG---- CU-GA----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG---C- ---------( -----GCAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGG---AAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-AACUA-GA GGA-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-UCCUCG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-AGGA-C 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mcl.phphov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Microlunatus phosphovorus str. NM-2. ACCESSION No information KEYWORDS No information. SOURCE Microlunatus phosphovorus str. NM-2. ORGANISM Microlunatus phosphovorus. REFERENCE 1 AUTHORS Nakamura,K., Hiraishi,A., Yoshimi,Y., Kawaharasaki,M., Masuda,K. and Kamagata,Y. TITLE Microlunatus phosphovorus gen. nov., sp. nov., a new gram-positive polyphosphate-accumulating bacterium isolated from activated sludge JOURNAL Int. J. Syst. Bacteriol. 45, 17-22 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26170|g442470 isolate_name= NM-2 BASE COUNT 346 a 359 c 468 g 271 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-U--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUU---G -ACUC-U-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -AGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-C--G-G- ---CCG-(-- --------AC 541 AU-------- -)-CUG---- CU-GA----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG---C- ---------( -----GCAA- ---------) ---------G 1081 ---------- ---------- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUG-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGG---AAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-AACUA-GA GGA-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-UC CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(CUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-UCCUCG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAA-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-U-G-C- AA-UAC-C(G 2881 -CAA)GGUU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-AGGA-C 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13.4 ARMB.ERYTHREUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13.4 ARMB.ERYTHREUM_SUBGROUP. ORGANISM 2.16.1.13.4 ARMB.ERYTHREUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Armb.fasti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromicrobium fastidiosum. ACCESSION No information KEYWORDS No information. SOURCE Aeromicrobium fastidiosum. ORGANISM Aeromicrobium fastidiosum. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76862|g439672 Former RDP Sids: Ncr.fastid NCIMB 12713 (T) = ATCC 49363 NB: renaming ref Tamura & Yokota IJSB 44, 608-611 (1994) former name Nocardioides fastidiosa BASE COUNT 336 a 353 c 479 g 282 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUCAAUGG AGAGUU(U-A A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCUU---C -UCUU-U-GG 421 -AAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-A CC-C--C-U- ---UUC-(-- --------GC 541 AU-------- -)-GUU---- GG-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCNA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU U-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAA--UU-AC CUNACG-CUG AG-G------ -------AG- C-GAAA-GC- NU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- N-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Armb.fast2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromicrobium fastidiosum. ACCESSION No information KEYWORDS No information. SOURCE Aeromicrobium fastidiosum. ORGANISM Aeromicrobium fastidiosum. REFERENCE 1 AUTHORS Collins,M.D. and Stackebrandt,E. TITLE Molecular taxonomic studies on some LL-diaminopimelic acid-containing coryneforms from herbage: Description of Nocardioides fastidiosa sp. nov. JOURNAL FEMS Microbiol. Lett. 57, 289-294 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53189 Former RDP Sids: Noc.fastid Ncr.fasti2 NCIMB 12713 (T) = ATCC 49363 NB: renaming ref Tamura & Yokota IJSB 44, 608-611 (1994) former name Nocardioides fastidiosa BASE COUNT 326 a 343 c 466 g 275 t 2966 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUCAAUGG AGAGUU(U-A A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--UN----- ---------- ---------- 241 --------CU -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G AGCG-GCGA- 361 -A-CG-GG-U NAGU---AAN -NC-GUGAG- CNA--UCU-G C-CCUN---C -UCUU-U-GG 421 -AAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-A CC-C--C-U- ---NUG-(-- --------GC 541 AU-------- -)-GUU---- NG-GG----N UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CUNGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCNA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-NGUC-C-- 1201 NAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UAAA-GGGC- UNG-UAG-GC -C|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UN-A-GCG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUN-GA GGG-----AU U-CN-GGGGA GAA-C|GGAA 1381 UU-CCUNGU- GAU-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAA--UU-AC CUNACG-CUG AG-G------ -------AG- C-GAAA-GC- NU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACN-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| UCG-GU-NUA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- N-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-UNAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -UUNC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Armb.fast3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromicrobium fastidiosum. ACCESSION No information KEYWORDS No information. SOURCE Aeromicrobium fastidiosum. ORGANISM Aeromicrobium fastidiosum. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78209|g2102654 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 341 a 355 c 491 g 281 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCUU---C -UCUU-U-GG 421 -AAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-A CC-C--C-U- ---UUC-(-- --------GC 541 AU-------- -)-GUU---- GG-GG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU U-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGCU... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.sp3007 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides sp.. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides sp. ORGANISM Nocardioides sp. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76179|g517392 BASE COUNT 330 a 342 c 464 g 269 t 2971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ......AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCUU---C -UCUU-U-GG 421 -AAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-C CC-C--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GUU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU U-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCN-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 N---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.sp3005 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides sp.. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides sp. ORGANISM Nocardioides sp. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76178|g517391 BASE COUNT 334 a 355 c 477 g 278 t 2932 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCUU---C -UCUU-U-GG 421 -AAU-AA-CC A--------- ------UU-- G(-GAAA-)C -GAUG-G--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-C CC-C--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GUU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GCG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU U-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GNA--NN-AC CUGACG-CUG NG-G------ -------AG- C-NAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCG--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- CNNAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Armb.eryth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aeromicrobium erythreum. ACCESSION No information KEYWORDS No information. SOURCE Aeromicrobium erythreum. ORGANISM Aeromicrobium erythreum. REFERENCE 1 AUTHORS Miller,E.S., Woese,C.R. and Brenner,S. TITLE Description of the erythromycin-producing bacterium Arthrobacter sp. NRRL B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. JOURNAL Int. J. Syst. Bacteriol. 41, 363-368 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37200 BASE COUNT 328 a 350 c 485 g 264 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUCAACGN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G C-CCUU---C -UCUU-U-GG 421 -AAU-AA-GC G--------- ------UU-- G(-GAAA-)C -GACG-U--C UAAUGCC-GA 481 AU-AUG---- ---------- -------A-C CC-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GAG---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UGUGG-( GU-AAU-GG) -C-CCACN-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-UAG-GC -N|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-U CA-GGG-C(- UC-A)A-CCC -UG-A-GNG- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-NC(-G AA-G)NCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCN N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GNNAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-UGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCCN-- ---------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GN-C AA)-CUC-G- -GAGG-A-AG 2761 N-NG-GGG-A UG-ACG--UC -A-AGUC-UU CAU-G-CC-C CUUAU-G-NC -CA--GGGC- 2821 U-UCA-AG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GNC- UCAGNUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGN-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UN -NGNAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-UGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.D.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.13.5 NCR.ALBUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.13.5 NCR.ALBUS_SUBGROUP. ORGANISM 2.16.1.13.5 NCR.ALBUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.jensen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides jensenii. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides jensenii. ORGANISM Nocardioides jensenii. REFERENCE 1 AUTHORS Collins,M.D., Dorsch,M. and Stackebrandt,E. TITLE Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov JOURNAL Int. J. Syst. Bacteriol. 39, 1-6 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53214 Former RDP Sids: Noc.jensen DSM 20641 (T) = JCM 1364 = IFO 14755 = NCIMB 9770 = ATCC 49810 BASE COUNT 333 a 355 c 469 g 270 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--CU----- ---------- ---------- 241 --------C- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-GG--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGAG- CAA--UCU-G C-CCUU---C -NCUU-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUN-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C CA-C--C-U- ---CCG-(-- --------GC 541 AU-------- -)-CGG---A UG-GU----N GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CG 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -C|-GU-NU- 1261 G-UC-ACG|U CGG---GAGU G-AAA-AC-C AG-GUG-C(- UU-A)A-CAC -CU-N-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUN-GA GGU-----AN G-CN-GGGGA GAA-C|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUNACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-UNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NNG ACN-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCC--- ---------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU N-)------- G--------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ANG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-GC A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.simplx 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides simplex. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides simplex. ORGANISM Nocardioides simplex. REFERENCE 1 AUTHORS Collins,M.D., Dorsch,M. and Stackebrandt,E. TITLE Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov . JOURNAL Int. J. Syst. Bacteriol. 39, 1-6 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53213 Former RDP Sids: Noc.simpl2 NCIMB 8929 (T) = ATCC 6946 = IMET 10368 = NCTC 4215 = FHP 534 = CDA 835 = BUCSAV 385 NB: altho same cc#, not same seq. as Ncr.simpl2 BASE COUNT 319 a 340 c 451 g 257 t 3009 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--CU----- ---------- ---------- 241 --------C- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-GG--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGAG- CAA--UCU-G C-CCUU---C -NCUU-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUN-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C CA-C--C-U- ---CCG-(-- --------GC 541 AU-------- -)-CGG---A UG-GU----N GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UNA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CG 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -C|-GU-NU- 1261 G-UC-ACG|U CGG---GAGU G-AAA-AC-C AG-GUG-C(- UU-A)A-CAC -CU-N-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUN-GA GGU-----AN G-CN-GGGGA GAA-C|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUNACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-UNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NNG ACN-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCC--- ---------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU N-)------- G--------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ANG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-GC A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.jense2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides jensenii. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides jensenii. ORGANISM Nocardioides jensenii. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78210|g2102671 DSM 20641 (T) = JCM 1364 = IFO 14755 = NCIMB 9770 = ATCC 49810 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 345 a 363 c 486 g 273 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CCUU---C -ACUU-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUG-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-C CA-C--C-U- ---CCG-(-- --------GC 541 AU-------- -)-CGG---A UG-GU----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CG 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGG---GAGU G-AAA-AC-C AG-GUG-C(- UU-A)A-CAC -CU-G-GCC- 1321 -UGCU-UCCG A-UAC-GGGC A-GACUA-GA GGU-----AU G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-UCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------G ---CCGG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCC--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU A-)------- G--------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGCU... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.albus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides albus. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides albus. ORGANISM Nocardioides albus. REFERENCE 1 AUTHORS Collins,M.D., Dorsch,M. and Stackebrandt,E. TITLE Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov . JOURNAL Int. J. Syst. Bacteriol. 39, 1-6 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53211 Former RDP Sids: Noc.albus DSM 43109 (T) = ATCC 27980 BASE COUNT 338 a 350 c 461 g 278 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (---U----- ---------- ---------- 241 --------CN -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-GG--G UACG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCCA---G -GCUN-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUN-A--U UAAUACC-GC 481 AU-ACG---- ---------- -------A-C AA-C--C-G- ---AUU-(-- --------GC 541 AU-------- -)-NAU---C UN-GU----N NU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GCC---- 661 ----UAGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UNA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 UAG-CCUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -N|-GU-NU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-C AG-GUG-C(- UU-A)A-CAC -CU-N-GCC- 1321 -UNCU-UCCG A-UAC-GGGC A-GACUN-GA GGU-----AC U-CA-GGGGA GAA-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAG--UA-UC CUNACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AC-ACA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUN -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU A-)------- G--------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UCC-C(G 2881 -UNA)GGGU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGNC- GUC-ACG--- --UCA-CGAA A--CU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-C-UC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.luteus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides luteus. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides luteus. ORGANISM Nocardioides luteus. REFERENCE 1 AUTHORS Collins,M.D., Dorsch,M. and Stackebrandt,E. TITLE Transfer of Pimelobacter tumescens to Terrabacter gen. nov. as Terrabacter tumescens comb. nov. and of Pimelobacter jensenii to Nocardioides as Nocardioides jensenii comb. nov JOURNAL Int. J. Syst. Bacteriol. 39, 1-6 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53212 Former RDP Sids: Noc.luteus NCIMB 11455 (T) = ATCC 43052 BASE COUNT 328 a 349 c 468 g 281 t 2950 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--NN----- ---------- ---------- 241 --------CG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GG--G UCCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCCA---G -GCUN-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-GC 481 AU-ACG---- ---------- -------A-C AA-C--C-G- ---AUU-(-- --------GC 541 AU-------- -)-GAU---C UG-GU----U GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCC---- 661 ----UGGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UNA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 UAG-CCUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UUG-UAG-GC -N|-GU-NU- 1261 G-UC-GCG|U CGG---ANGU G-AAA-AC-C AG-GUG-C(- UU-A)A-CAC -CU-N-GCC- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUN-GA GGU-----AC U-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGNAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GAG--UA-UC CUNACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AU-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGN -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACG-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU N-)------- G--------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -UAGCG-G-A G-CU-GU-NG A-AGGU-GGG GCU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.plant2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides plantarum. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides plantarum. ORGANISM Nocardioides plantarum. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78211|g2102672 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 326 a 357 c 506 g 295 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGG-C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GUACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC A--------- ------CU-- C(-GAAA-)G -GGUG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-A--C--U ---CAC-(-- --------GC 541 AU-------- -)-GUG---A UG-UG----U GU-GGAAA-- ---C------ ---------- 601 --(------- ---UUUUG-- ---)------ ---------| -----U--G- G--GUG---- 661 ----GGGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GAC-- GA-AG-C-GC --CC-----( -----GUGU- ---------) ---G-GG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-A CU-GGG-C(- UU-A)A-CCG -AG-U-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUU-GA GGC-----AU U-GA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 CAA--UG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-CUA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -U-------- -------GGG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCCU--- -GC----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GCUU--- C--------- ---UU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GG-------- ---------| --G-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC-GUC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGAUGGUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCAC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGCU... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.planta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides plantarum str. Grainger J70 (T) NCIMB 12834. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides plantarum str. Grainger J70 (T) NCIMB 12834. ORGANISM Nocardioides plantarum. REFERENCE 1 AUTHORS Collins,M.D., Cockcroft,S. and Wallbanks,S. TITLE Phylogenetic analysis of a new ll-diaminopimelic acid-containing coryneform bacterium from herbage, Nocardioides plantarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 523-526 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69973 biol_source= herbage isolate_name= Grainger J70 (T) BASE COUNT 329 a 355 c 514 g 302 t 2876 others ORIGIN 1 .......... .......... .......... .UUC-UACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU... ....-..GCA A-GUC-GAGC 121 G--GU-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGG-C-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GUACA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUU---C -ACUC-U-GG 421 -GAU-AA-GC A--------- ------CU-- G(-GAAA-)G -GGUG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C GC-A--C--U ---CAC-(-- --------GC 541 AU-------- -)-GUG---A UG-UG----U GU-GGAAA-- ---C------ ---------- 601 --(------- ---UUUUG-- ---)------ ---------| -----U--G- G--GUG---- 661 ----GGGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GAC-- GA-AG-C-GN --NC-----( -----GUGU- ---------) ---G-NG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-A CU-GGG-C(- UU-A)A-CCG -AG-U-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUU-GA GGC-----AU U-GA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 CAA--UG-UU CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-CNA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCCU--- -GC----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GCUU--- C--------- ---UU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- N--------- ---------| NNG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CUA- 2281 UG--UUGC-C AG-CAC-GUC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGAUGGUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUN-AUC 3001 CG-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUC-ANG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CNA 3121 G-UGG-C-CU -AA-CCAC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UGGGGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUCG GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.picNb 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Nb.. ACCESSION No information KEYWORDS No information. SOURCE clone Nb. ORGANISM clone Nb. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M ., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27857|g903928 BASE COUNT 325 a 353 c 490 g 290 t 2918 others ORIGIN 1 .......... .......... .......... .......UGC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----C---- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUU---G -GCUU-U-GG 421 -GAU-AA-CU A--------- ------UC-- G(-GAAA-)C -GGUG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CA-A--U-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---G UG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----U--C- G--GCU---- 661 ----GGGG-- AUG---U-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C-GC --CG-----( -----AUGA- ---------) ---U-GG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-C CA-GGG-C(- UU-A)A-CCC -UG-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUA-GA GGC-----AU G-CA-GGGGA GAA-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------A 1501 GCA--UG-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GUUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -AW-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UA-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- AAGA-)-UGU -G-GCCC--- C--------- ---UU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- G--------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-HG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-U(G 2881 -UAA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG GCU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FJ21A 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone FJ21A.. ACCESSION No information KEYWORDS No information. SOURCE clone FJ21A. ORGANISM clone FJ21A. REFERENCE 1 AUTHORS Rajan,J., Dudekula,K., Perkins,R.E., Sariaslani,S., Barns,S.M ., Reysenbach,A.-L., Rehm,S., Ehringer,M.A. and Pace,N.R. TITLE Mineralization of 2,4,6-trinitrophenol (picric acid): Characterization and phylogenetic identification of a microbial consortium and pure strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27856|g903927 BASE COUNT 321 a 354 c 493 g 288 t 2920 others ORIGIN 1 .......... .......... .......... .......UGC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGCU-CC (--UU----- ---------- ---------- 241 --------CR -)NG-GGUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUG---U -GCUC-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U--C ---CGC-(-- --------GC 541 AU-------- -)-GUG---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GCG---- 661 ----CAGGG- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-C AU-GGG-C(- UU-A)A-CUC -AU-G-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUA-GA GGU-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG ----CCU--- ---------- 1681 -(AUC-CA)- ---------- ---------- -U-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----GCC 1981 -CCC-A--(- GAGA-)-UGG -G-GGUC--- U--------- ---CU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- AU-------- -----A---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GC)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC-GUC C--------- ---------- ----(---UU ---CG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- GGAUGGUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JAP416 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JAP416.. ACCESSION No information KEYWORDS No information. SOURCE clone JAP416. ORGANISM clone JAP416. REFERENCE 1 AUTHORS Rochelle,P.A., Cragg,B.A., Fry,J.C., Parkes,R.J. and Weightman,A.J. TITLE Effect of sample handling on estimation of bacterial diversity in marine sediments by 16S rRNA gene sequence analysis JOURNAL FEMS Microbiol. Ecol. 15, 215-226 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09779|g495531 BASE COUNT 59 a 66 c 88 g 56 t 4107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U--C ---UAG-(-- --------GC 541 AU-------- -)-CUA---G CG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----CAGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGC-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC. .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.simpl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides simplex. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides simplex. ORGANISM Nocardioides simplex. REFERENCE 1 AUTHORS Miller,E.S., Woese,C.R. and Brenner,S. TITLE Description of the erythromycin-producing bacterium Arthrobacter sp. NRRL B-3381 as Aeromicrobium erythreum gen. nov., sp. nov. JOURNAL Int. J. Syst. Bacteriol. 41, 363-368 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M37693 Former RDP Sids: Arb.simple ATCC 6946 = NCIMB 8929 (T) = IMET 10368 = NCTC 4215 = FHP 534 = CDA 835 = BUCSAV 385 NB: former name Arthrobacter simplex altho same cc#, not same seq. as Ncr.simplx BASE COUNT 336 a 357 c 491 g 292 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUCUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U--C ---UAG-(-- --------GC 541 AU-------- -)-CUA---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----CAGN-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGN ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-A GC-GGG-C(- UU-A)A-CUC -GU-U-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUA-GA GGU-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----GCC 1981 -CCU-A--(- GAGA-)-UAG -G-GGUC--- U--------- ---CU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- AU-------- -----A---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CNG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGN-GGG GCU-GG-CG- A......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ncr.simpl3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardioides simplex. ACCESSION No information KEYWORDS No information. SOURCE Nocardioides simplex. ORGANISM Nocardioides simplex. REFERENCE 1 AUTHORS Schumann,P., Prauser,H., Rainey,F.A., Stackebrandt,E. and Hirsch,P. TITLE Friedmanniella antarctica gen. nov., sp. nov., an LL-diaminopimelic acid-containing actinomycete from Antarctic sandstone JOURNAL Int. J. Syst. Bacteriol. 47 (2), 278-283 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z78212|g2102673 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 331 a 353 c 496 g 288 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGCC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GGUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--U--C ---UAG-(-- --------GC 541 AU-------- -)-CUA---G UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUC---- 661 ----CAGG-- AUG---U-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UU- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GGA A)-GCC-UGA UCCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---GAGU G-AAA-AC-A GC-GGG-C(- UU-A)A-CUC -GU-U-GCU- 1321 -UGCU-UUCG A-UAC-GGGC A-GACUA-GA GGU-----AU G-CA-GGGGA GAA-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUG-- ---------- ---------- ---------G 1501 GCA--UU-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GU- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GC-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----GCC 1981 -CCU-A--(- GAGA-)-UAG -G-GGUC--- U--------- ---CU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- AU-------- -----A---| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CG-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CC-GU-CG A-AGGU-GGG GCU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14 SACCHAROPOLYSPORA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14 SACCHAROPOLYSPORA_GROUP. ORGANISM 2.16.1.14 SACCHAROPOLYSPORA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.1 PSEUDONOCARDIA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.1 PSEUDONOCARDIA_SUBGROUP. ORGANISM 2.16.1.14.1 PSEUDONOCARDIA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.hcarbo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia hydrocarbonoxydans. ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia hydrocarbonoxydans. ORGANISM Pseudonocardia hydrocarbonoxydans. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76955|g474410 Former RDP Sids: Amc.hcarbo DSM 43281 (T) = NRRL B-16171 = NCIMB 9436 = IMET 7645 = ATCC 15104 NB: former name Amycolata hydrocarbonoxydans BASE COUNT 273 a 316 c 438 g 248 t 3101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGG- UAA--CCU-G C-CCUC---A -GCUU-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UNNG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-NGU---- NG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUNUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCUC| UUUC-GA-CC 1021 --UU-GAC-- GA-AG-G-C- ---------( -----UUCGG ---------) ---------G 1081 ---------- -------U-- U-GA-CGGU- A-GGG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGNAUUA -UU-GGGC|G UNAA-GAGC- UCG-UAG-GC -G|-GU-NU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-AC-U UC-GGG-C(- UN-N)A-CCC -UN-A-GCUN 1321 -GCGG-UCGA U-ACG-GGCA U-CACUN-NA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UNAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA .......... .(........ .)........ 1921 .......... ..G-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AC----CCC 1981 -UNU-A--(- NAGA-)-UAG -G-CCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NN U-)------- NG-------- ---------| UNN-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGN- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-CGG-C-CN -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UA-GU-CG A-AGGU-GGG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amc.petrop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolata nitrificans. ACCESSION No information KEYWORDS No information. SOURCE Amycolata nitrificans. ORGANISM Amycolata nitrificans. REFERENCE 1 AUTHORS Wersing,U., Dorsch,M., Stackebrandt,E. and Hirsch,P. TITLE Amycolata petroleophila, sp. nov. and Amycolata nitrificans, sp. nov. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55608 Former RDP Sids: Amy.petrop DSM new = IFAM 78 = IFAM 379 BASE COUNT 305 a 338 c 468 g 279 t 2986 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UUGUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGG- UAA--CCU-N C-CCUU---A -GCUU-U-GG 421 -GAU-AA-CC C--------- ------CG-- G(-GAAA-)C -UNGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-C- ---AUU-(-- --------GC 541 AU-------- -)-NGU---- NG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CUNGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CC 1021 --UU-GAC-- GA-AG-G-C- ---------( -----UUCGG ---------) ---------G 1081 ---------- -------U-- U-GA-CGGU- A-GGN-N-NA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CCC -UG-A-GCUU 1321 -GCGG-UCGA U-ACG-GGCA U-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GNCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-C-A--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| -U--GU-GUG |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-NA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCUA-AAAG -CU-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-AG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-CGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CCGU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-G-A G-UN-GU-CG A-AGGU-GGA CUG-GC-GA- CC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.petrol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia petroleophila. ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia petroleophila. ORGANISM Pseudonocardia petroleophila. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80596|g599925 (bases 29 to 1402) Former RDP Sids: Noc.petrol ATCC 15777 (T) = NCIMB 9438 = IMET 7162 = DSM 43193 NB: former name Nocardia petroleophila BASE COUNT 290 a 338 c 471 g 267 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUC---A -GCUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U---CC- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGN NNCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CC 1021 --UU-GAC-- GA-AG-G-C- ---------( -----UUCGG ---------) ---------G 1081 ---------- -------U-- U-GA-CGGU- A-GGG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCUU 1321 -GCGG-UCGA U-ACG-GGCA U-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GN-CCA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-CGG-C-CU -AA-CC---- ---------- ---------- -----(---- -C.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.saturn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia saturnea. ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia saturnea. ORGANISM Pseudonocardia saturnea. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76956|g474414 Former RDP Sids: Amc.saturn DSM 43195 (T) = NRRL B-16172 = NCIMB 9437 = IMRU 1181 = IMET 7647 = ATCC 15809 NB: former name Amycolata saturnea BASE COUNT 294 a 342 c 497 g 265 t 2978 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UN--N ACAC-AUGCA A-GUC-GAGC 121 G--GUNAA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--------- ----CCGGGC GGGGG..... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGG- UNA--CCU-G C-CCUC---A -GCUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---NUC-(-- --------GC 541 NN-------- -)-GCG---- GG-UU----- GU-GGAAA-- ---G------ ---------- 601 --(------- --UNNNNU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UNGU AAA--CCUC| UUUC-GC-CA 1021 --UC-GAC-- GA-AG-C-CU ---------( -----UGCGG ---------) --------GG 1081 ---------- -------U-- U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CCC -UG-A-GCUU 1321 -GCGG-UCGA U-ACG-GGCA U-CACUN-NA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGNAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G NA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACU- -AA---GAAU UG-A--GG-G -G-G-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGA -UNNAUU-CG -(AUGAAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----GCG 1981 -UCC-A--(- GAGA-)-UGG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UA-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGN- 2821 N-UCA-CA-C AUG--CUNCA AUGGC-C-UG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -UA-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUA- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 A-CGG-C-CY -AA-CC---- ---------- ---------- -----(---- -CGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UA-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.alni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia alni str. 3LS VKM AC901 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia alni str. 3LS VKM AC901 (T). ORGANISM Pseudonocardia alni. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76954|g474409 Former RDP Sids: Amc.alni isolate_name= 3LS NB: former name Amycolata alni BASE COUNT 283 a 325 c 473 g 251 t 3044 others ORIGIN 1 .......... .......... .......... ....UGUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUC---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-A--- ---------( -----GNAA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---UCGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CCC -UG-A-GCUN 1321 -GCGG-UCGA U-ACG-GGCA U-CACUN-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----GCG 1981 -UCC-A--(- GAGA-)-UGG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| CUN-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-NG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.K12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone K12.. ACCESSION No information KEYWORDS No information. SOURCE clone K12. ORGANISM clone K12. REFERENCE 1 AUTHORS Pedersen,K. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91527|g987802 BASE COUNT 73 a 73 c 120 g 67 t 4043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAA-CGUUGU CC-GG-AUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CGG---CCGG U-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -UG-A-GCUU 1321 -CCGG-UCGA U-ACG-GGCA U-CACUU-GA GUU-----CG G-CA-GGGAA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GV(-R RA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GAC GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-C--GU--A 1621 AAN-N-NNGG G--CA-CU-- -------A|G -GU-GU-GGG -GG-CVA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCWG-UGU 1741 KH--GC---- --NN-(-AA- ---C)G-CA- KUAA-GUGCC C|G|C-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.hphobi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia halophobica. ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia halophobica. ORGANISM Pseudonocardia halophobica. REFERENCE 1 AUTHORS McVeigh,H.P., Munro,J. and Embley,T.M. TITLE The phylogenetic position of Pseudoamycolata halophobica (Akimov et al. 1989) and a proposal to reclassify it as Pseudomocardia halophobica JOURNAL Int. J. Syst. Bacteriol. 44, 300-302 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z14111 Former RDP Sids: Psa.hphobi NB: former name Pseudoamycolata halophobica BASE COUNT 309 a 353 c 491 g 277 t 2946 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|UAC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCU---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUGG--- ---------- -------A-C CU-C--U-U- ---CCU-(-- --------GC 541 AU-NN----- -)-NNN---- GG-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UG-GGG-C(- UU-A)A-CUC -UG-G-GCUU 1321 -GCGG-UCGA U-ACG-GGCA U-CACUG-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-CCA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CNG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CUCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-CGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---NAGUC- GUAA-CCNG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.compac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia compacta. ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia compacta. ORGANISM Pseudonocardia compacta. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76959|g474436 BASE COUNT 262 a 303 c 426 g 225 t 3160 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ....U----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UNNNUU-- ---)------ ---------| --------C- G--GCU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGN ----NA-C-- CGG-C|G-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCY -AGN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUNUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-NAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-A--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CUC -UG-A-GCGU 1321 -GCGG-UCGA U-ACG-GGCA U-CACUN-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GGU -NUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U....... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-CA -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -UG-A-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-CUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- NUC-AGG--- --UCA-CGAA A--GU-UGG- UA-AC-CCCC -GAA-G-CCG 3121 A-CGG-C-CU -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGAGG-G-A G-UA-GU-CG A-AGGU-GGG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amc.nitrif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolata nitrificans. ACCESSION No information KEYWORDS No information. SOURCE Amycolata nitrificans. ORGANISM Amycolata nitrificans. REFERENCE 1 AUTHORS Wersing,U., Dorsch,M., Stackebrandt,E. and Hirsch,P. TITLE Amycolata petroleophila, sp. nov. and Amycolata nitrificans, sp. nov. JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55609 Former RDP Sids: Amy.nitrif DSM new = IFAM 78 = IFAM 379 BASE COUNT 273 a 303 c 428 g 237 t 3135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... ....ACC-GG 481 AU-ANG---- ---------- -------A-C CA----C-U- ---NAUC(-- --------GC 541 AU-------- -)-NUC---- GG-UG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-A--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-GGU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CUC -UG-A-GCGU 1321 -GCGG-UCGA U-ACG-GGCA U-CACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- A-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACC 1981 -GGC-A--(- GAGA-)-UGU -G-GCC---- ---------- ---CN----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| -C--GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-CA -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -UG-A-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 G-CGG-C-CC -NA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.autotr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium kluyveri. ACCESSION No information KEYWORDS No information. SOURCE Clostridium kluyveri. ORGANISM Clostridium kluyveri. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54288 Former RDP Sids: Amy.autotr Amc.autotr DSM 555 = ISP 5011 = DSM 40011 = ATCC 19727 = DSM 43210 = NCIMB 10680 (T) = ATCC 8527 NB: former name Amycolata autotrophica BASE COUNT 280 a 316 c 437 g 259 t 3084 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .........G C-CCUC---C -NCUU-U-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--U-U- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-CG----U GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GGGG-- YUU---G-|- CUCGC----- -GG|----CC U--AUUA-G- CUN-N---UU 721 NG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----CG-GG 781 U-NG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-A--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-U-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-NGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-NU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U UG-GGG-C(- UN-A)A-CUC -UG-A-GCG- 1321 -UGCG-GUCG A-UAC-GGGC A-CACUU-NA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UNAAA)-UNC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUY AG-G------ -------AG- C-GAAA-GC- GU-NGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUNG G--CG-CU-- -------N|G -GU-GU-GGG --A-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-GUG ACA-UG|-C- ---------A ---CAGG--- -AC----CGC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-NG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AA--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-CA -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -UG-A-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- N)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUN-ACG--- --UCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 G-CGG-C-CN -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia thermophila str. A18 ATCC 19285 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia thermophila str. A18 ATCC 19285 (T). ORGANISM Pseudonocardia thermophila. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19285 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20389 isolate_name= A18 NB: previous submission of (updated) X53195; using updated version BASE COUNT 258 a 281 c 432 g 243 t 3162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .....C-(-- --------GC 541 AU-------- -)-GUU---- CU-GG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GCU---- 661 ----GGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGG------- -----AG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|G-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCN-GU-GU 961 G-G-GG-G-A U-GAA--G-G -C(--UN-NG --)GG-UUGU AAA--CCNN| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C-CU ---------( -----UGCG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCG-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UU-CAG-C(- UU-A)A-CUG -GG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC AUCACUA-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CAAGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-UUGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUNG G--CG-CU-- -------N|G -GU-GU-GGG -GG-CUA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|G|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNN--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCG-GU-NUG |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GA)-CCCGC AA-------- UGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU UAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CNGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CU-N-GNN- UCAGUUCGGA 2941 U-CGGGGUC- (UGCANC-U- N)-GCCCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- ---------- ---------- ---------- 3061 ---------- ---------- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 A-UGG-C-CU -AA-CCUC-- ---------- ---------- -----(---- -UUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGAGGG-G-A G-UC-GU-CG A-AGGU-GGG ACC-GG-CG- AUC....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psc.therm2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudonocardia thermophila str. A18 ATCC 19285 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudonocardia thermophila str. A18 ATCC 19285 (T). ORGANISM Pseudonocardia thermophila. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19285 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53195 isolate_name= A18 NB: M20389 is an earlier, less complete version of X53195 BASE COUNT 269 a 299 c 448 g 253 t 3107 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .....CC-GG 481 AU-AUG---- ---------- -------A-C CG-U--U--- ---GCC-(-- --------GC 541 AU-------- -)-GGUC--- GG-GU----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GCU---- 661 ----GGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGG------- -----AG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|G-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCN-GU-GU 961 G-G-GG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CCNN| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C-CU ---------( -----UGCG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UU-CAG-C(- UU-A)A-CUG -GG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC AUCACUA-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CAAGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-UUGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUNG G--CG-CU-- -------N|G -GU-GU-GGG -GG-CUA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNN--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GA)-CCCGC AA-------- UGAG-C--GC AACCC-UN-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU UAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CU-N-GNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCANC-U- N)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUN- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUN-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA---CCG 3121 A-UGG-C-CU -AA-CCUC-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UC-GU-CG A-AGGU-GGG ACC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.2 KIBDELOSPORANGIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.2 KIBDELOSPORANGIUM_SUBGROUP. ORGANISM 2.16.1.14.2 KIBDELOSPORANGIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kib.aridum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kibdelosporangium aridum.. ACCESSION No information KEYWORDS No information. SOURCE Kibdelosporangium aridum. ORGANISM Kibdelosporangium aridum. REFERENCE 1 AUTHORS Bowen,T., Stackebrandt,E., Dorsch,M. and Embley,T.M. TITLE The phylogeny of Amycolata autotrophica, Kibdelosporangium aridum and Saccharothrix australiensis JOURNAL J. Gen. Microbiol. 135, 2529-2536 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53191 (bases 1 to 1450) legacy_attribute= family Pseudonocardiaceae NB: the genus Kibdelosporangium is proposed to be classified in BASE COUNT 304 a 341 c 486 g 275 t 2970 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AUUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGU-C--U UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UU-G--C-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -G-GUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCGA CGCU-GC-GU 961 G-A-GG-G-A U-GAC--G-G -C(--UN-CG --)GG-UUGU AAA--CCUN| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-G ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---UCGU G-AAA-AC-C UG-GGG-C(- UU-A)A-CCC -UG-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-UCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------G ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CUA-GGG-CC UUGUA----C 3061 ACACACCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA---CCC 3121 A-CGG-C-CU -AA--CCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGCAGG-G-A G-UG-GU-CG A-AGGA-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kib.aridu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kibdelosporangium aridum.. ACCESSION No information KEYWORDS No information. SOURCE Kibdelosporangium aridum. ORGANISM Kibdelosporangium aridum. REFERENCE 1 AUTHORS Bowen,T., Stackebrandt,E., Dorsch,M. and Embley,T.M. TITLE The phylogeny of Amycolata autotrophica, Kibdelosporangium aridum and Saccharothrix australiensis JOURNAL J. Gen. Microbiol. 135, 2529-2536 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53191 BASE COUNT 313 a 356 c 500 g 280 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AUUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGU-C--U UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UU-G--C-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UG-UG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-G ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---UCGU G-AAA-AC-C UG-GGG-C(- UU-A)A-CCC -UG-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-UCU--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------G ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CUA-GGG-CC UUGUA----C 3061 ACACACCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA---CCC 3121 A-CGG-C-CU -AA--CCC-- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGCAGG-G-A G-UG-GU-CG A-AGGA-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.3 SCP.HIRSUTA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.3 SCP.HIRSUTA_SUBGROUP. ORGANISM 2.16.1.14.3 SCP.HIRSUTA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.hirsut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora hirsuta. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora hirsuta. ORGANISM Saccharopolyspora hirsuta. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20388 ATCC 27875 (T) = NCIMB 11079 legacy_attribute= previous version - M20388 (Release 74.0); using updated version BASE COUNT 270 a 286 c 434 g 258 t 3128 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..U--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AG-A--U-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UG-UU----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----CAGG-- AUN---A-|G CCNNC----- -GG|----CC U--AUCN-G- CUN-G---UU 721 NG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-GA-CA 1021 --UC-GAC-- GA-AG-C-CA --UC-----( ------UUU- ---------) -----GG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---UCGU G-AAA-AC-C GG-GAG-C(- UN-A)A-CUC -CU-N-GCU- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUU-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UGGG-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------UGU -UUCCG-UGC 1741 CU--UA---- --GC-(UNA- ---C)G-CA- UUAA-GCGCC U|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AC----AGC 1981 -CCC-U--(- GAGA-)-GGG -G-GNGNC-- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-NG-UGCA UN|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-G.... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ....G-GG-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-GAU-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GNN- UNAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GCCCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- U......... .......... .......... 3061 .......... .......... ...CA-UGAA A--GA-CGG- UA-AC-ACCC -GAA---CCC 3121 A-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UN-GU-CG A-AGGU-GGG ACU-NG-CG- AUC....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.hirsu1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora hirsuta. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora hirsuta. ORGANISM Saccharopolyspora hirsuta. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53196 ATCC 27875 (T) = NCIMB 11079 NB: M20388 is an earlier, less complete version of X53196 BASE COUNT 287 a 314 c 454 g 274 t 3047 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AG-A--U-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UG-UU----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----CAGG-- AUN---A-|G CCNNC----- -GG|----CC U--AUCN-G- CUN-G---UU 721 NG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GA-CA 1021 --UC-GAC-- GA-AG-C-CA --UC-----( ------UUU- ---------) -----GG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CUA---UCGU G-AAA-AC-C GG-GAG-C(- UN-A)A-CUC -CU-N-GCU- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUU-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UGGG-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------UGU -UUCCG-UGC 1741 CU--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC U|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AC----AGC 1981 -CCC-U--(- GAGA-)-GGG -N-NNNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GN)-CCCGC AA-------- NGAG-C--GC AACCC-UN-N |-UN--CNN- 2281 UG--UUGC-N AG-CNN---- ---------- ---------- ---N(---UN ---NNN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NNG|G 2701 G-GA-CU-C- N-UGG-GG-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-GAU-C(G 2881 -UGA)GGUU- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GNC- UNAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUN- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUN-ACG--- --UCA-UGAA A--GA-CGG- UA-AC-ACCC -GAA---CCC 3121 A-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UN-GU-CG A-AGGU-GGG ACU-NG-CG- AUC-CC.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.hordei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora hordei str. A54 ATCC 49856. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora hordei str. A54 ATCC 49856. ORGANISM Saccharopolyspora hordei. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49856 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53197 ATCC 49856 = NCIMB 12824 (T) isolate_name= A54 BASE COUNT 275 a 304 c 467 g 249 t 3081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .........C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AU-C--G-U- ---GCC-(-- --------GC 541 AU-------- -)-NGU---- GU-GG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACN)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GA-CA 1021 --CC-GAC-- GA-AG-C-CA --UC-----( -----UUCG- ---------) -----GG-UG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCN-R ACUGC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUGGU CC-GGAUNNA -UU-GGGN|G UAAA-GAGC- UNG-UAG-GC -G|-GU-UN- 1261 G-UC-GCG|U CUR---UCGU G-AAA-AC-C GG-GA--C(- UA-A)A-CUC -CN-A-GCU- 1321 -UGCG-GUGG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG NG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UGGG-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------UGU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAN 1801 NGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-GUG ANA-UG|-C- ---------A ---CUGG--- -AU----GGC 1981 -CCU-A--(- GAGA-)-GGG -G-GUGU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------GG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GN)-CCCGC AA-------- NGAG-C--GC AACCC-UN-N |-UC--CUA- 2281 UG--NUGC-G AG-CG----- --G------- ---------- ---G(---UG ---AUG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-NA-CU-N- G-UAG-GG-G A-CU-G-CCG --GG(-GU-N AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-GAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCNN-AAAG -CC-G-GNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- GUN-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACUC -GAA-G-CCU 3121 A-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- -UGUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-UG-GU-UG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.erythr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora erythraea str. M5-12259 NRRL 2338. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora erythraea str. M5-12259 NRRL 2338. ORGANISM Saccharopolyspora erythraea. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Organism information Culture collection: NRRL 2338 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53198 NRRL 2338 = IFO 13426 (T) = NCIMB 8594 = ATCC 11635 isolate_name= M5-12259 BASE COUNT 270 a 298 c 452 g 254 t 3102 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ...UC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 NU-AGG---- ---------- -------A-U AG-A--U-G- ---GGG-(-- --------GA 541 UG-------- -)-GUC---- UG-UG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUN---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-NG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACN)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUNUU G-CNCAAU-- GG-NN-(GNA A)-GCC-UNA NGCA|-GCNA CGCN-GN-GU 961 G-N-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GA-CA 1021 --UC-GAC-- GA-AG-C--- ---------( ----GUGCGG ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-G ANUAC-GNG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNGU CC-GGANNNA -UY-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-UCG|U CGU---UAGU G-AAA-AC-U GG-AGU-C(- UA-A)A-CCU -UC-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUU-----CG U-NA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- GACN-CCRG- 1441 -U-G-UC(-G AA-G)GCNG- -GNCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CGG CC-G------ -------AG- C-GAAA-GC- GG-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUGU-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------GGU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UNAA-GCGCC C|N|G-CC.. .......... 1801 .GC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AC----UGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUGU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUG- 2281 UG--UUGC-C AG-CAN---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-NCG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CU-G-GUC- UNAGUUCGGA 2941 U-CGGGGUC- (UGCNCC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-C CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-AGG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.spA215 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora sp. str. A215. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora sp. str. A215. ORGANISM Saccharopolyspora sp. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76967|g474772 biol_source= isolated by J. Lacey from fodder isolate_name= A215 BASE COUNT 294 a 330 c 458 g 255 t 3039 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AUGAA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-A--C-G- ---GCC-(-- --------GC 541 AU-------- -)-GGC---C UG-UG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C-U- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UG-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GUCG A-UAC-CGGC A-GACUN-GA GUU-----CG G-CA-GGGGA GGC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UGG--- ---------- 1681 -(GUU-CC)A ---------- ---------- -C-------- -------CGU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUAA-CC UNG-GU-NNG ACA-UG|-C- ---------A ---CUAG--- -AC----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UN|G-CUG-- UCG-UCA|.. .......... |....(.... .)........ 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-CC--CUN- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GG-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU SAU-G-CC-C CUNRU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-N-N-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUA- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGGCC- GUC-AGG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UG...... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.gregor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora gregorii str. A85 NCIMB 12823 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora gregorii str. A85 NCIMB 12823 (T). ORGANISM Saccharopolyspora gregorii. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76962|g474446 biol_source= isolated by J. Lacey from fodder isolate_name= A85 BASE COUNT 292 a 339 c 499 g 261 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGAA--GC.. .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGG|-AG--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---C UG-GG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --UC-GAC-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UG-CCG-C(- UU-A)A-CGG -UG-G-GCG- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUG--- ---------- 1681 -(UUU-CC)A ---------- ---------- -C-------- -------GGU -UCCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----CGC 1981 -CCC-U--(- GAGA-)-GGG -G-GNGU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- GG-------- ---------| CCU-RU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- ACG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-G-G-N- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUG--AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACNGNNC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCGG-- ---------- ---------- -----(---- -UNCGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C CGGGGG-G-A G-UN-GU-CG A-AGGU-GGG ACU-GG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.rectiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora rectivirgula.. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora rectivirgula. ORGANISM Saccharopolyspora rectivirgula. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20387 Former RDP Sids: Fae.rectiv NB: Scp.recti2 is the same organism (ATCC) from the same lab (Stackebrandt); but the sequences differ significantly former name Faenia rectivirgula BASE COUNT 262 a 279 c 414 g 241 t 3180 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AU-U--N-U- ---GCC-(-- --------GC 541 AU-------- -)-NGU---- GG-GG----U UU-UGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUN-----|G CUUGC----- -GG|----CC U--AUCA-G- CUN-N---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-NG-C-CG| -G-CCU--(N -AGA)-GGGU ----NA-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACG)--G GAG-NU-AG- C-A---GU-G 901 GGN-AAUCUN G-CGCAAU-- GG-GU-(GAA A)-GCC-UNA UGCA|-GCAA CGCU-GU-GU 961 G-G-GN-N-A U-GAA--G-G -C(--UN-CG --)GG-UNGU NAA--CCNN| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-C-CU ---------( -----UUUG- ---------) --------GG 1081 ---------- -------G-- U-NA-CGGU- A-GGU-G-GG N-NA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUAGU CC-GGAUUUA -UU-GGGU|G UAAA-GAGC- UGG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UA-CAG-C(- UA-A)A-CUG -UG-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGGGUA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -NA-CUNG-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------GGU -UUCCG-UGC 1741 CU--UA---- --GC-(UNA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUNG--- -AU----CGC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGNC-- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| CUN-GU-GCA |---C|A--G 2161 GU-NG-UGCA UN|G-CUN-- UCG-UNA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UAAA G..)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .........G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CC-G-GGN- UCAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GCCCNNG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCC 3121 A-UGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -GUGUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UN-GU-CG A-AGGU-GGG ACU-NG-CG- AUC....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scp.recti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharopolyspora rectivirgula. ACCESSION No information KEYWORDS No information. SOURCE Saccharopolyspora rectivirgula. ORGANISM Saccharopolyspora rectivirgula. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of :Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53194 Former RDP Sids: Fae.recti2 ATCC 33515 (T) = DSM 43747 legacy_attribute= M20387 is an earlier, less complete version of X53194 NB: former name Faenia rectivirgula BASE COUNT 265 a 285 c 416 g 243 t 3167 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AU-U--N-U- ---GCC-(-- --------GC 541 AU-------- -)-NGU---- GG-GG----U UU-UGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUN-----|G CUUGC----- -GG|----CC U--AUCA-G- CUN-N---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-NG-C-CG| -G-CCU--(N -AGA)-GGGU ----NA-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AGA-C-UCC -(UACG)--G GAG-NU-AG- C-A---GU-G 901 GGG-AAUCUN G-CGCAAU-- GG-GU-(GAA A)-GCC-UNA UGCA|-GCAA CGCU-GU-GU 961 G-G-GG-G-A U-GAA--G-G -C(--UU-CG --)GG-UNGU AAA--CCNN| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-C-CU ---------( -----UUUG- ---------) --------GG 1081 ---------- -------G-- U-GAACGGU- A-GGU-G-G- G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUAGU CC-GGAUUUA -UU-GGGU|G UAAA-GAGC- UGG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UA-CAG-C(- UA-A)A-CUG -UG-G-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGGGUA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -NA-CUNG-- ---------- 1681 -(-UU-CC)- ---------- ---------- AC-------- -------GGU -UUCCG-UGC 1741 CU--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUNG--- -AU----CGC 1981 -CCU-A--(- GAGA-)-UAG -G-GNNNC-- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GN)-CCCGC AA-------- NGAG-C--GC AACCC-UN-N |-UN--CNN- 2281 UG--UUGC-N AG-CNN---- ---------- ---------- ---N(---UN ---NNN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NNG|G 2701 G-GA-CU-C- N-NNG-GN-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CC-G-GGC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCC 3121 A-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acy.haloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinopolyspora halophila. ACCESSION No information KEYWORDS No information. SOURCE Actinopolyspora halophila. ORGANISM Actinopolyspora halophila. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54287 ATCC 27976 = NCIMB 11472 (T) legacy_attribute= be classified in the family Pseudonocardiaceae legacy_attribute= the genus Actinopolyspora is proposed to NB: updated sequence in Acy.halop2 BASE COUNT 262 a 310 c 467 g 259 t 3078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... ......UG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GUGC--- ---------- -------U-G CA-U--G-C- ---CUA-(-- --------GC 541 AU-------- -)-GGG---- GU-GU----G UG--GAAA-- ---GGUCCAU C--UCU---- 601 --(------- ---GUGA--- ---)------ ---GGG--G| GUGUUC--C- G--GCC---- 661 ----UGGG-- UNG---G-|G CUCGC----- -GG|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-NG-C-CG| -G-CCU--(G -AGA)-GGGU ----NA-U-- UGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UNA CGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CCU-| UUUC-GG-CC 1021 --CU-GAC-- G--------- ---------( -----AAUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GGG-G-CU G-AA--GAAG ---------C 1141 -ACCGGCU-N ACUNC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNAU CC-GGAUUUA -CC-GGGC|G UAAA-GGGC- UNG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U GGG---UUGU G-GAA-AU-C CC-CAG-C(- UC-A)A-CUG -GG-C-ACG- 1321 -UGCG-GCCG A-UAC-GGGC A-GACUC-GA GGG-----CG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- ---------- 1681 -(GUU-GU)- ---------- ---------- ---------- -------GGU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC ANU-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACN-UA|-C- ---------A ---CCGG--- -AG----NNC 1981 -CUC-A--(- GAGA-)-UCG -G-GCNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-AG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUN- 2281 UG--UUGC-U AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----CGCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGNN- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCNAC-U- N)-UACCCUG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGNC- GUN-ACG--- --GCA-UGAA A--GU-CGG- UA-AC-ACCC -UNA-G-CUC 3121 A-UGG-U-CU -AA-CCACAC ---------- ---------- -----(---- -GGNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -------GUG UGGGGG-G-C G-UN-GU-CG A-AGGU-GGG ACU-NG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acy.mortiv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinopolyspora mortivallis. ACCESSION No information KEYWORDS No information. SOURCE Actinopolyspora mortivallis. ORGANISM Actinopolyspora mortivallis. REFERENCE 1 AUTHORS McVeigh,H.H., Embley,M.T. and Divers,M.M. TITLE Evidence from ribosomal RNA genes of a fast clock in the genus Actinopolyspora JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22730|g485865 BASE COUNT 265 a 326 c 507 g 258 t 3020 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... GCGC-UU--C ACAC-AUGCA A-GUC-GA.. 121 .......... .....GGGUG ---------- ---------- ---------- ---------- 181 ---------- ---------C CUUCCCC-UC (--UU----- ---------- ---------- 241 -------UUU -)GG-GGGUU GGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGGG--G- UGU|-GG-GA AGUG-GCGG- 361 -A-CGGGG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -GCGU-G-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UGGG-G--C UAAUACC-GG 481 AU-GGCU--- ---------- -------C-G CA-U--G-C- ---C-C-(-- --------GC 541 AU-------- -)-GGG---- GG-GU----G UG-GGAAA-- ---GGUUCUC U--CCU---- 601 --(------- ---GUGA--- ---)------ ---GGG--G| GGGUUC--C- G--GCC---- 661 ----UGGG-- AGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUU-G---UU 721 GG-UG-CG-( GU-GAG-GG) -C-GUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A G-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UU-U-CG-GA 1021 --AGUGAC-- G--------- ---------( -----AAUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GGG-G-CU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---UCGU G-GAA-AU-G UG-CGG-C(- UU-A)A-CCG -GG-C-ACG- 1321 -UGCG-GCCG A-UAC-GGGC A-GACUC-GA GGG-----CG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CCG--- ---------- 1681 -(GGU-GA)- ---------- ---------- -U-------- -------GGU -GUCCG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UCC-A--(- GAGA-)-UGG -G-GUUU--- ---------- --CCU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UG ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUGAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCUG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUN- NNUAC-NNN- CCC-GGG-CC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acy.halop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinopolyspora halophila.. ACCESSION No information KEYWORDS No information. SOURCE Actinopolyspora halophila. ORGANISM Actinopolyspora halophila. REFERENCE 1 AUTHORS McVeigh,H.P., Embley,M.T. and Divers,M.M. TITLE Evidence from 16S ribosomal RNA sequences of a fast clock in the genus Actinopolyspora JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54287 NB: from GB:This partial sequence, derived from PCR amplified DNA, supercedes that submitted as accession number X54287 for Actinopolyspora halophila in Emley et al 1988 System. Appl. Microbiol. 11: 44-5 (RDPid Acy.haloph) BASE COUNT 293 a 360 c 538 g 284 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGAC-GGC-G ACGC-CU--C ACAC-AUGCA A-GUC-GAAC 121 G--UC-U--G CA-------- ---------- ---------- ---------- ---------- 181 ---------- ------CCCU GUGUGCC-UC (--UU----- ---------- ---------- 241 --------CG -)GG-GG-GU -UGGGG---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGU|-GG-GA AGUG-GCGG- 361 -A-CGGGG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCUG---G -GCGU-G-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -UGGG-G--C UAAUACC-GG 481 AU-GUGC--- ---------- -------U-G CA-U--G-C- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GU-GU----G UG-GGAAA-- ---GGUUCAU C--UCU---- 601 --(------- ---GCGA--- ---)------ ---GGG--G| GUGUUC--C- G--GCC---- 661 ----UGGG-- UGG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUU-G---UU 721 GG-UG-CG-( GU-GAG-GG) -C-GUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A G-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UU-C-GG-CC 1021 --CUUGAC-- G--------- ---------( -----AAUG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GGG-G-CU A-AA--GAAG ---------C 1141 -GCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---UCGU G-GAA-AU-G CG-CAG-C(- UC-A)A-CUG -GG-C-ACG- 1321 -UGCG-GCCG A-UAC-GGGC A-GACUC-GA GGG-----CG G-UA-GGGGC AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCC--GU-UC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CC---- ---------- 1681 -(GUU-GU)- ---------- ---------- ---------- -------GGU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----UGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-A CCCGG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCUG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -UAA-G-CUC 3121 A-UGG-U-CU -AA-CCACAC ---------- ---------- -----(---- -GGUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -------GUG UGGGGG-G-C G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.4 SCT.AUSTRALIENSIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.4 SCT.AUSTRALIENSIS_SUBGROUP. ORGANISM 2.16.1.14.4 SCT.AUSTRALIENSIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sct.mutabm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharothrix mutabilis subsp. mutabilis DSM 43853 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharothrix mutabilis subsp. mutabilis DSM 43853 (T). ORGANISM Saccharothrix mutabilis. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76966|g474764 BASE COUNT 320 a 366 c 499 g 257 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUGAUUGG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-R C-CCUG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CC-C--A-U- ---GGG-(-- --------GC 541 AU-------- -)-CUN---- GU-GG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---C-|A CCCGC----- -GG|----CC U--AUCA-G- CUN-N---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUNA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CCGU G-AAA-AC-U UC-ACG-C(- UN-A)A-CGU -GG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AA----ACC 1981 -UCC-A--(- GAGA-)-UGG -G-GGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCNCCC- GUC-AAG--- --UCA-CGAA A--GN-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sct.mutabc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharothrix mutabilis subsp. capreolus DSM 40225 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharothrix mutabilis subsp. capreolus DSM 40225 (T). ORGANISM Saccharothrix mutabilis. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76965|g474763 BASE COUNT 316 a 361 c 499 g 260 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUNAUUGG AGAGUN(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UA--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCUG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UNAUACC-GN 481 NU-ACG---- ---------- -------A-C CC-C--A-U- ---GGG-(-- --------GC 541 AU-------- -)-CUN---- GU-GG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCU -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CCGU G-AAA-AC-U UC-ACG-C(- UU-N)A-CGU -GG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AA----ACC 1981 -UCC-A--(- GAGA-)-UGG -G-GGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-YY UNGUA----C 3061 ACACCGCNC- GUC-AUN--- --UCA-CGAN A--GN-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sct.austra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharothrix australiensis.. ACCESSION No information KEYWORDS No information. SOURCE Saccharothrix australiensis. ORGANISM Saccharothrix australiensis. REFERENCE 1 AUTHORS Bowen,T., Stackebrandt,E., Dorsch,M. and Embley,T.M. TITLE The phylogeny of Amycolata autotrophica, Kibdelosporangium aridum and Saccharothrix australiensis JOURNAL J. Gen. Microbiol. 135, 2529-2536 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53193|g393448 (bases 1 to 1460) legacy_attribute= family Pseudonocardiaceae legacy_attribute= the genus Saccharothrix is proposed to be classified in the NB: separate GB entry M29282 is not as complete as this one. BASE COUNT 324 a 365 c 503 g 267 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|GAC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-U--C-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UAA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CG(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUU-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CCGU G-AAA-AC-U UC-ACG-C(- UU-A)A-CGU -GG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AA----ACC 1981 -UCC-A--(- GAGA-)-UGG -G-GGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CC-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--AAGAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CC-G-GUC- UCAGAACGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGANGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ACGAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-A-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCGG-G-A A-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sct.coerul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharothrix coeruleofusca. ACCESSION No information KEYWORDS No information. SOURCE Saccharothrix coeruleofusca. ORGANISM Saccharothrix coeruleofusca. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76963|g474445 BASE COUNT 316 a 359 c 495 g 262 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUNAUUGG AGAGUN(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UA--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-N C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -URGG-U--C UNAUACC-GG 481 AU-AUG---- ---------- -------A-C UU-C--G-C- ---AUC-(-- --------GC 541 AU-------- -)-NGU---- GU-GG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UNAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CCGU G-AAA-AC-U UC-ACG-C(- UU-A)A-CGU -GG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UNC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UNNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-YY UNGUA----C 3061 ACACCNCCC- NUC-AUN--- --UCA-CGAA A--GN-CGG- UA-NC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sct.longis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharothrix longispora. ACCESSION No information KEYWORDS No information. SOURCE Saccharothrix longispora. ORGANISM Saccharothrix longispora. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76964|g474762 BASE COUNT 322 a 359 c 493 g 263 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUNAUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UA--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------C- (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-N C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -URGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-R--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-NGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-GCG|U CGG---CUGU G-AAA-AC-U UC-ACG-C(- UN-A)A-CGU -GG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-AC---- ---------- 1681 -(UNC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACC 1981 -AGU-A--(- GAGA-)-UAU -U-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| CCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-YU UNGUA----C 3061 ACACCGCCC- NUC-AUG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lz.albicap 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lentzea albidocapillata str. IMMIB D-958 DSM 44073 (T). ACCESSION No information KEYWORDS No information. SOURCE Lentzea albidocapillata str. IMMIB D-958 DSM 44073 (T). ORGANISM Lentzea albidocapillata. REFERENCE 1 AUTHORS Yassin,A.F., Rainey,F.A., Brzezinka,H., Jahnke,K.D., Weissbrodt,H., Budzikiewicz,H., Stackebrandt,E. and Schaal,K .P. TITLE Lentzea gen. nov., a new genus of the order Actinomycetales JOURNAL Int. J. Syst. Bacteriol. 45, 357-363 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44073 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84321|g861012 biol_source= patient suffering peritoneal carcinomatosis after colon cancer isolate_name= IMMIB D-958 BASE COUNT 327 a 356 c 488 g 267 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G CC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GAGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C AC-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UU-GG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CUC -CA-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GCC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CUAG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- UA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G--CC 3121 G-UGG-C-UC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-AC-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGG-U 3301 G---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Asy.mirum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinosynnema mirum. ACCESSION No information KEYWORDS No information. SOURCE Actinosynnema mirum. ORGANISM Actinosynnema mirum. REFERENCE 1 AUTHORS Yassin,A.F., Rainey,F.A., Brzezinka,H., Jahnke,K.D., Weissbrodt,H., Budzikiewicz,H., Stackebrandt,E. and Schaal,K .P. TITLE Lentzea gen. nov., a new genus of the order Actinomycetales JOURNAL Int. J. Syst. Bacteriol. 45, 357-363 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84447|g860736 BASE COUNT 326 a 366 c 502 g 265 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G CC-U--U-C- ---CCN-(-- ---------C 541 AU-------- -)-GGG---- GU-UG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-U UG-GGG-C(- UU-A)A-CCC -CG-A-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-AC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACC 1981 -AGU-A--(- GAGA-)-UAU -U-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Asy.mirum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinosynnema mirum. ACCESSION No information KEYWORDS No information. SOURCE Actinosynnema mirum. ORGANISM Actinosynnema mirum. REFERENCE 1 AUTHORS Tamura,T., Hayakawa,M. and Hatano,K. TITLE A new genus of the order Actinomycetales, Spirilliplanes gen. nov., with description of Spirilliplanes yamanashiensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (1), 97-102 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85475|g2326290 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 333 a 387 c 501 g 277 t 2878 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UAGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-G CC-CU-U-C- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- -U-UG----G UU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CAGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC--CG|U CGG---CCGU G-AAA-NC-U UG-GGG-C(- UU-A)A-CCC -CG-A-GCC- 1321 -UGCG-GUCC A-UAC-GGGC A-GACUU-GA GUU-----AG C-GC--GGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AG-CU-- -------A|G -GU-GU-GGG -GG-AC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -CUCCG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCUCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACC 1981 -AGU-A--(- GAGA-)-UAU -U-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-GUA |---C|A--G 2161 GU-G----CA UG|G-CUG-- UCG-UCA|-G C-U----G-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-C |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-NCG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 UUCGCGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -CAA-G-CCC 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGC UAG-C-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kt.viridog 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kutzneria viridogrisea. ACCESSION No information KEYWORDS No information. SOURCE Kutzneria viridogrisea. ORGANISM Kutzneria viridogrisea. REFERENCE 1 AUTHORS Stackebrandt,E., Kroppenstedt,R.M., Jahnke,K.-D., Kemmerling ,C. and Gurtler,H. TITLE Transfer of Streptosporangium viridogriseum (Okuda et al. 1966), Streptosporangium viridogriseum subsp. kofuense (Nonomura and Ohara 1969), and Streptosporangium albidum (Furumai et al. 1968) to Kutzneria gen. nov. as Kutzneria viridogrisea comb nov., Kutzneria kofuensis comb. nov., and Kutzneria albida comb. nov., respectively, and emendation of the genus Streptosporangium JOURNAL Int. J. Syst. Bacteriol. 44, 265-269 (1994) STANDARD No information REFERENCE 2 AUTHORS Kemmerling,C., Guertler,H., Kroppenstedt,R., Toalster,R. and Stackebrandt,E. TITLE Evidence for the phylogenetic heterogeneity of the genus Streptosporangium JOURNAL Syst. Appl. Microbiol. 16, 369-372 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70429|g541752 Former RDP Sids: Sts.virido DSM 43850 (T) = ATCC 25242 NB: former name Streptosporangium viridogriseum BASE COUNT 292 a 327 c 452 g 239 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA-AA-N AC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUA|CAC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -ACUG-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-A...... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ ....G----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-A...... .........( .......... ......---) .......... 1081 .......... .......... U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGA---CUGU G-AAA..... ........(. ..-.)..... .......... 1321 .UGCA-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GAC -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-CUG ACA-UG|-C- ---------A ---UUGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- UA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ack.ripari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Actinokineospora riparia. ACCESSION No information KEYWORDS No information. SOURCE Actinokineospora riparia. ORGANISM Actinokineospora riparia. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76953|g474413 BASE COUNT 310 a 342 c 496 g 265 t 2963 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UCUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CU (--NNC---- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CUGA---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UU-C--U-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-G--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-AC-C UG-CAG-C(- UU-A)A-CUG -CG-G-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -GA-CCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGU -UUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNNN-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACU 1981 -GCU-A--(- GAGA-)-UAG -U-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GUN- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN. .......... .......... .......... 3061 .......... ....ANG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.5 AMY.ORIENTALIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.5 AMY.ORIENTALIS_SUBGROUP. ORGANISM 2.16.1.14.5 AMY.ORIENTALIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.orient 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis orientalis subsp. orientalis DSM 40040 (T). ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis orientalis subsp. orientalis DSM 40040 (T). ORGANISM Amycolatopsis orientalis. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76958|g474412 DSM 40040 (T) = JCM 4600 = JCM 4235 = IFO 12086 = ATCC 19795 BASE COUNT 312 a 343 c 478 g 278 t 2965 others ORIGIN 1 .......... .......... .......... ..AUUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A G......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.CC--U NCGG-GUGG- 361 -A-UN-AG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UU-U--U-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UG-GR----A GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|G CCCGC----- --G|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GC-CA 1021 --GG-GAC-- GA-AU-G--- ---------( -----UGAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UCGU G-AAA-AC-U CC-ACG-C(- UU-A)A-CGU -GG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -U........ .(.......C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------G ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GG)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUNCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-G-A G-UG-GU-CG A-AG...... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.spM417 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis sp. str. MG 417. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis sp. str. MG 417. ORGANISM Amycolatopsis sp. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77959|g608667 isolate_name= MG 417 BASE COUNT 325 a 361 c 502 g 280 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GNAC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C UU-U--U-G- ---CGC-(-- --------GC 541 AU-------- -)-CCG---- UG-NA----A GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CCNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UCGU G-AAA-AC-U CC-ACG-C(- UU-A)A-CGU -GG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --CG-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------G ---CCAG--- -AC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCG-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-CGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG---A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG-C--UG GAUCACC... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.azurea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis azurea. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis azurea. ORGANISM Amycolatopsis azurea. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53199 Former RDP Sids: Amy.azurae NRRL 11412 = JCM 3275 = DSM 43854 (T) NB: GB wrong, not in J. Gen. Microbiol. 134, 961-966 (1988) BASE COUNT 284 a 307 c 436 g 245 t 3104 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). ...GG-U--C UNAUACC-GG 481 AU-AUA---- ---------- -------A-C AA-C--U-C- ---AUG-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----A GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACN)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CC-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U NGU---UCGU G-AAA-AC-U CC-ACG-C(- UN-A)A-CGU -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUN-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-U-UC(-G AA-G)GCGG- -NNCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -CG-ACA--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GG-CUG ACG-UG|-C- ---------G ---CYAG--- -AC----RUC 1981 -CCU-A--(- GAGA-)-UGG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UU|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UC--CUA- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUN- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- N)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGNC- GUU-ACG--- --GCA-UGAA A--GN-CGG- UA-AC-ACCC -GAA---CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-G-A G-UN-GU-CG A-AGGU-GGG ACU-NG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.medter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis mediterranei str. ME 83/973 ATCC 13685 (T). ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis mediterranei str. ME 83/973 ATCC 13685 (T). ORGANISM Amycolatopsis mediterranei. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13685 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76957|g474411 ATCC 13685 (T) = IMET 7651 = IFO 13415 = DSM 43304 isolate_name= ME 83/973 BASE COUNT 305 a 343 c 478 g 271 t 2979 others ORIGIN 1 .......... .......... .......... ..AUUGUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UU-- G(-GAAA-)C -GGGG-U--C UAAUACC-GG 481 AU-AUC---- ---------- -------A-C AA-U--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GG-GU----U GU-UGAAA-- ---GU----- ---------- 601 --(------- ---UCUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---A-|A CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAUNNA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGG---CCGU G-AAA-UC-U CC-ACG-C(- UN-A)A-CGU -GG-A-GCG- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUN-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-NCUGGU- GUA-GCG(-G UNAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -CG-AC---- ---------- 1681 -(AUC-CA)C ---------- ---------- ---------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GG. .......... .(........ G)--CGAAGA 1921 A-CCUGA-CC UGG-GC-UGG ACA-UG|-C- ---------G ---CCAG--- -AC----AUC 1981 -CUC-A--(- GAGA-)-UGG -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------GG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-A |-UC--CUA- 2281 CG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAG-GUU- CCU-GGG-CC UUGUA----C 3061 ACACCGCCC- GUA-NGG--- --UUA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CGUA....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.methan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis methanolica. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis methanolica. ORGANISM Amycolatopsis methanolica. REFERENCE 1 AUTHORS de Boer,L., Dijkhuizen,L., Grobben,G., Goodfellow,M., Stackebrandt,E., Parlett,J.H., Whitehead,D. and Witt,D. TITLE Amycolatopsis methanolica sp. nov., a facultatively methylotrophic actinomycete JOURNAL Int. J. Syst. Bacteriol. 40, 194-204 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54274 legacy_attribute= be classified in the family Pseudonocardiaceae legacy_attribute= the genus Amycolatopsis is proposed to BASE COUNT 291 a 322 c 457 g 260 t 3046 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..G|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-U C-NNUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------CU-- N(-GAAA-)C -GGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CU-G--U-C- ---GAG-(-- --------GN 541 AU-------- -)-NUC---- GG-UG----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----AGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-AGU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UNG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CUG---CUGU G-AAA-AU-C CG-GGG-C(- UU-A)A-CUC -CG-G-ACC- 1321 -UGCA-GUGG A-UAC-GGGC A-GGCUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-UUNG G--CG-CU-- -------A|G -GU-GU-GGG -CG-AC---- ---------- 1681 -(UUC-CA)C ---------- ---------- ---------- -------GUU -GUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AA----ACC 1981 -GGU-A--(- GAGA-)-UGU -C-GGCC--- ---------- ---CN----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Amy.fastid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Amycolatopsis fastidiosa. ACCESSION No information KEYWORDS No information. SOURCE Amycolatopsis fastidiosa. ORGANISM Amycolatopsis fastidiosa. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information REFERENCE 2 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids JOURNAL J. Gen. Microbiol. 134, 961-966 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53200 legacy_attribute= be classified in the family Pseudonocardiaceae legacy_attribute= the genus Amycolatopsis is proposed to NB: GB wrong, not in J. Gen. Microbiol. 134, 961-966 (1988) BASE COUNT 287 a 317 c 452 g 243 t 3077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .........U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UNAUACC-GG 481 AU-AUG---- ---------- -------A-C AA-C--U-G- ---AUG-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----CGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACN)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUNUU G-CNCAAU-- GG-NN-(GAA A)-GCC-UNA CGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUU| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -GCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNGU CC-GGAANNA -UU-GGGC|G UAAA-GAUC- UNG-UAG-GC -G|-GU-UN- 1261 G-UC-UCG|U CGG---CCGU G-AAA-AC-C AG-GGA-C(- UA-A)A-CUC -UG-G-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUN-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGARG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCNG- -GGCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CNG NN-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-CGG -GA-GCA--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUG -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AA----ACC 1981 -GGU-A--(- GAGA-)-GAU -C-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--CCA- 2281 UG--UUGC-C AG-CAN---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-NGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-CUCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUG-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUG....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.E.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.14.6 SCM.VIRIDIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.14.6 SCM.VIRIDIS_SUBGROUP. ORGANISM 2.16.1.14.6 SCM.VIRIDIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.virid4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora viridis str. K191. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora viridis str. K191. ORGANISM Saccharomonospora viridis. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38021|g872318 isolate_name= K191; Greiner-Mai R25 BASE COUNT 326 a 367 c 523 g 274 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|GAU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC A-CACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -AU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUGG--- -AC----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.virid3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora viridis str. K73 NCIMB 9602 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora viridis str. K73 NCIMB 9602 (T). ORGANISM Saccharomonospora viridis. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38007|g872317 isolate_name= K73 BASE COUNT 326 a 367 c 523 g 274 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|GAU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC A-CACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -AU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUGG--- -AC----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.virid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora viridis str. SB-33. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora viridis str. SB-33. ORGANISM Saccharomonospora viridis. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38005|g872316 biol_source= hay isolate_name= SB-33 BASE COUNT 326 a 367 c 523 g 274 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-A GC-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- GUG|GAU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC A-CACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -AU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUGG--- -AC----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUACG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.viridi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora viridis. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora viridis. ORGANISM Saccharomonospora viridis. REFERENCE 1 AUTHORS Embley,T.M., Smida,J. and Stackebrandt,E. TITLE The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. JOURNAL Syst. Appl. Microbiol. 11, 44-52 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54286 legacy_attribute= in the family Pseudonocardiaceae. legacy_attribute= the genus Saccharomonospora is proposed to be classified BASE COUNT 293 a 334 c 489 g 235 t 3025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|..U--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- ---------C AC-CAGC-U- ---NCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UGCG--- ---)------ ---------| -----G--C- G--GUN---- 661 ----CAGG-- AUG---A-|G CCGGC----- -GG|----CC C--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AC-(GGA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCN| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUGGU CC-GGAAUGA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-GCG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UG-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC A-CACUG-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACG-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GGCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -AU-GCU--- ---------- 1681 -(GUG-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UGAA-GCGCC C|C|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU GG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUGA-CC UGG-GU-GGG ACA-UG|-C- ---------A ---CUNG--- -AC----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-CCGG--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CC -CA--GGGC- 2821 U-GCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGU-G-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCGN-AAAG -CU-N-GNC- UGAGUUCGGA 2941 U-CGUGGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAURC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNNC- NUN-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -NA-CCCC-- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-UN-GU-CG A-AGGU-GGG ACC-CG-CG- AUC....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.glauc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora glauca str. SB-37. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora glauca str. SB-37. ORGANISM Saccharomonospora glauca. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38006|g872304 biol_source= hay isolate_name= SB-37 BASE COUNT 318 a 370 c 521 g 281 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCCG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.glauc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora glauca str. K202. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora glauca str. K202. ORGANISM Saccharomonospora glauca. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38004|g872303 isolate_name= K202; J-S.Ruan 350 BASE COUNT 318 a 370 c 521 g 281 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCCG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.glauca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora glauca str. K169 DSM 43769 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora glauca str. K169 DSM 43769 (T). ORGANISM Saccharomonospora glauca. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43769 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38003|g872302 isolate_name= K169 BASE COUNT 318 a 369 c 521 g 282 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCCG---U -ACUC-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-G--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGUAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.sp1206 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora sp. str. A1206. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora sp. str. A1206. ORGANISM Saccharomonospora sp. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76961|g474771 biol_source= isolated by J. Lacey, Rothamsted experimental station isolate_name= A1206 BASE COUNT 298 a 347 c 486 g 251 t 2994 others ORIGIN 1 .......... .......... .......... ..AUNGUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-NA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UNA--UCU-G C-CCUG---U -NCUC-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UNAUACC-GG 481 AU-AGG---- ---------- -------A-C AA-C--S-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- NG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CANN-- NUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UN-CG --)GG-UUGU NAA--CCCN| NNUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUNGU CC-GGAAUNA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UN-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUN-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUN-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(GUK-CA)- ---------- ---------- -C-------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UNA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGG....... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUNA-CC UGG-GC-UNG ACA-UG|-C- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UNGN--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNNU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-GUN- UNAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UNGUN-AUC 3001 GC-AGA-(UC -AGCAUN)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACNGNNC- GUC-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG AC........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.spK180 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora sp. str. K180. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora sp. str. K180. ORGANISM Saccharomonospora sp. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38020|g872309 isolate_name= K180; 30Urbakt BASE COUNT 323 a 366 c 518 g 282 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---UCAG--- -AC----GAC 1981 -UCC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.cyanea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora cyanea str. K168. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora cyanea str. K168. ORGANISM Saccharomonospora cyanea. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38018|g872298 isolate_name= K168; NA134 (T) BASE COUNT 317 a 371 c 523 g 278 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C GC-C--U-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----U GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CC 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-GCU--- ---------- 1681 -(GUU-CA)- ---------- ---------- -C-------- -------GCG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGUG GGU-G-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUC-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.caesia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora caesia. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora caesia. ORGANISM Saccharomonospora caesia. REFERENCE 1 AUTHORS Warwick,S., Bowen,T., McVeigh,H. and Embley,T.M. TITLE A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia JOURNAL Int. J. Syst. Bacteriol. 44, 293-299 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76960|g474444 BASE COUNT 304 a 350 c 481 g 260 t 2981 others ORIGIN 1 .......... .......... .......... ..AUUGUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UN--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------NG -)CU-GGGUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UNA--UCU-N C-CCUN---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UNAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- NG-UN----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CANN-- NUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCCN| NNUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUNGU CC-GGAAUNA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-RU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UN-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUN-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-G..... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UCG-GU-NCA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UA-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUNAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGGNC- GUC-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCG--- ---------- ---------- -----(---- -CUNCG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GG-G-A G-UN-GU-CG A-AG...... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.caesi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora caesia str. SB-01. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora caesia str. SB-01. ORGANISM Saccharomonospora caesia. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38022|g872300 biol_source= mushroom compost isolate_name= SB-01 BASE COUNT 319 a 367 c 521 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.caesi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora caesia str. K163 DSM 43068. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora caesia str. K163 DSM 43068. ORGANISM Saccharomonospora caesia. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43068 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38019|g872299 isolate_name= K163 BASE COUNT 319 a 367 c 521 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.caesi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora caesia str. SB-58. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora caesia str. SB-58. ORGANISM Saccharomonospora caesia. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38024|g872296 biol_source= mushroom compost isolate_name= SB-58 BASE COUNT 319 a 367 c 521 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.caesi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora caesia str. SB-22. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora caesia str. SB-22. ORGANISM Saccharomonospora caesia. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38023|g872297 biol_source= mushroom compost isolate_name= SB-22 BASE COUNT 319 a 367 c 521 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scm.azurea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharomonospora azurea str. K161. ACCESSION No information KEYWORDS No information. SOURCE Saccharomonospora azurea str. K161. ORGANISM Saccharomonospora azurea. REFERENCE 1 AUTHORS Kim,S.B., Yoon,J.H., Kim,H., Lee,S.T., Park,Y.H. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Saccharomonospora conducted with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 351-356 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z38017|g872295 isolate_name= K161; NA128 (T) BASE COUNT 319 a 367 c 521 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--CU-GA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- UUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-GU- 1261 G-UC-ACG|U CUG---CCGU G-AAA-AC-C UG-CGG-C(- UU-A)A-CCG -UG-G-GCG- 1321 -UGCG-GUGG A-UAC-GGGC AUCACUU-GA GUU-----CG G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCC--GA-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGG G--CG-CU-- -------A|G -GU-GU-GGG -GC-GC---- -U-------- 1681 -(GUU-CA)C ---------- ---------- ---------- -------GUG -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCCG-- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GGGGGG-G-A G-UG-GU-CG A-AGGU-GGG ACU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.15 MYCOBACTERIUM_COMPLEX. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.15 MYCOBACTERIUM_COMPLEX. ORGANISM 2.16.1.15 MYCOBACTERIUM_COMPLEX. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.F.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.15.1 MYCOBACTERIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.15.1 MYCOBACTERIA_GROUP. ORGANISM 2.16.1.15.1 MYCOBACTERIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.avium5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. avium str. chester DSM 43216. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. avium str. chester DSM 43216. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Boeddinghaus,B., Wolters,J., Heikens,W. and Boettger,E.C. TITLE Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level JOURNAL FEMS Microbiol. Lett. 70, 197-204 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43216 isolate_name= chester BASE COUNT 133 a 153 c 199 g 126 t 3765 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-A C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.avium2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. avium str. chester DSM 43216. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. avium str. chester DSM 43216. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE molecular level within the genus Mycobacterium Towards a phylogeny and definition of species at the JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 43216 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52918 isolate_name= chester BASE COUNT 321 a 345 c 496 g 298 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-A C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-NGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviumT 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis ATCC 19698 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis ATCC 19698 (T). ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE molecular level within the genus Mycobacterium Towards a phylogeny and definition of species at the JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52934 Former RDP Sids: Myb.para98 NB: former name Mycobacterium paratuberculosis BASE COUNT 320 a 345 c 495 g 298 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. Hiberry 1244. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. Hiberry 1244. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE and origin within the slow-growing mycobacteria Phylogenetic coherence of the Mycobacterium avium complex JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61670 isolate_name= Hiberry 1244 BASE COUNT 286 a 313 c 459 g 282 t 3036 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GNAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CANAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CN(--UU-CG --)GG-UUGU NAA--CCUY| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U YNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-RCGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GYC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGNAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. Linda. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. Linda. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE and origin within the slow-growing mycobacteria Phylogenetic coherence of the Mycobacterium avium complex JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61676 Former RDP Sids: Myb.paraCr legacy_attribute= Crohn's isolate isolate_name= Linda NB: former name Mycobacterium paratuberculosis BASE COUNT 288 a 309 c 449 g 280 t 3050 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-K A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GN 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUN---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUN---- 661 ----U----- -UG---N-|G CNNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CN(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NNG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-RCGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC N-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UNGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-Y AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. Y-37. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. Y-37. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE and origin within the slow-growing mycobacteria Phylogenetic coherence of the Mycobacterium avium complex JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61680 Former RDP Sids: Myb.para37 legacy_attribute= Strain isolated by JWU from jerseyville packing plant isolate_name= Y-37 NB: former name Mycobacterium paratuberculosis BASE COUNT 287 a 310 c 458 g 282 t 3039 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-N C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNGN-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCN -(NACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UN-GG 1081 ---------- -------A-U U-GN-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -AC------- ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-NU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CNG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CNC-G- -GNGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCN-CN-C NUG--CUACN AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- N)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu16 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. peip. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. peip. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE and origin within the slow-growing mycobacteria Phylogenetic coherence of the Mycobacterium avium complex JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61674 Former RDP Sids: Myb.paraPe biol_source= bovine isolate isolate_name= peip NB: former name Mycobacterium paratuberculosis BASE COUNT 290 a 316 c 450 g 280 t 3040 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUN---- 661 ----U----- -UG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-NN 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GNC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-NNCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- RG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNNAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. 11-11 (Brennan#38). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. 11-11 (Brennan#38). ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE and origin within the slow-growing mycobacteria Phylogenetic coherence of the Mycobacterium avium complex JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61673 isolate_name= 11-11 (Brennan#38) BASE COUNT 296 a 322 c 460 g 285 t 3013 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UNC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu35 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. 8-2 (Brennan#35). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. 8-2 (Brennan#35). ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61672 isolate_name= 8-2 (Brennan#35) BASE COUNT 294 a 316 c 457 g 284 t 3025 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UNNN-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- NGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCNN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACN N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. 9-60. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. 9-60. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61668 isolate_name= 9-60 BASE COUNT 289 a 319 c 455 g 283 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -NCUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCNC----- -GG|----CC U--AUCA-G- CUU-G---NU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-N A|-GGC-NA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--N 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACN AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. IIIb (TMC-1462). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. IIIb (TMC-1462). ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61669 isolate_name= IIIb (TMC-1462) BASE COUNT 283 a 309 c 459 g 284 t 3041 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAN -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UANG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GC-(GCA A)-GCC-UNA UGCN|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C------ 1861 --------AG CGGCGG-AGC A-U-GU-GGA -UUNAUU-CG -(AUNNAA-C G)--CGAAGN 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACW AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNN- UCWGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu19 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. 18. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. 18. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29569 Former RDP Sids: Myb.paratu biol_source= UI Vet. Dx Lab. collection isolate_name= 18 NB: former name Mycobacterium paratuberculosis BASE COUNT 297 a 316 c 463 g 285 t 3015 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGN A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.avium4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. serovar 4. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. serovar 4. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29572 isolate_name= serovar 4 BASE COUNT 286 a 319 c 458 g 283 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-N N)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUN--- ---)------ ---------| -----N--C- G--GUG---- 661 ----U----- -UG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GYN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- NCAGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- C)-GACCCCA -UGNAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.avium1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. serovar 1. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. serovar 1. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29573 isolate_name= serovar 1 BASE COUNT 291 a 316 c 456 g 280 t 3033 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUYAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UNNN--- ---)------ ---------| -----N--C- G--GUG---- 661 ----U----- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UNAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UY-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-Y AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUNAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu17 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. Dx8709991. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. Dx8709991. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61679 Former RDP Sids: Myb.paraS2 biol_source= ovine isolate isolate_name= Dx8709991 NB: former name Mycobacterium paratuberculosis BASE COUNT 289 a 312 c 459 g 279 t 3037 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 NU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G NCCGC----- -GG|----CC U--AUCA-N- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-NU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--NA-AN CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- NCNGUUNGGA 2941 U-UGGGGUC- (UGCNNC-U- C)-GACCCCA -UGAAGN-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -NGCAAC)-G CNG-CGGNG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu34 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. Brennan#34. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. Brennan#34. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61671 isolate_name= Brennan#34 BASE COUNT 291 a 319 c 462 g 284 t 3020 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCN-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCNN| UUUC-AC-CA 1021 --UC-GNC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACN AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu15 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61675 Former RDP Sids: Myb.paraDe legacy_attribute= deer isolate; R. Chiodini NB: former name Mycobacterium paratuberculosis BASE COUNT 288 a 313 c 458 g 283 t 3034 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-NN 961 G-G-GG-G-A U-GAC--G-G CN(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGUG-C-- 1201 NNG-CGUUGU CC-GGAAUUA -CU-GGGC|G UNAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UY-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu20 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. wein. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. wein. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61677 Former RDP Sids: Myb.parawe isolate_name= wein NB: former name Mycobacterium paratuberculosis BASE COUNT 292 a 315 c 456 g 283 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----U----- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCY -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NNG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-NGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGYAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.avium3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium str. SJB#2. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium str. SJB#2. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61667 isolate_name= SJB#2 BASE COUNT 277 a 310 c 447 g 277 t 3065 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------N-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----U----- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-NN 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-N-NN G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UNAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCG-NNCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGNA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -N-N-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUANC C|N|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -ANA-GGNAU UG-ACGGG-G -K-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GK(-GU-N NA)-CUY-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACW AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUNANAG -CC-G-GNY- UYNNUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCYA -UGNWGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCGCU)-G CGG-UNAAU- ACGNU-C... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aviu18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium avium subsp. paratuberculosis str. Dx8610316. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium avium subsp. paratuberculosis str. Dx8610316. ORGANISM Mycobacterium avium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61678 Former RDP Sids: Myb.paraSh biol_source= ovine isolate isolate_name= Dx8610316 NB: former name Mycobacterium paratuberculosis BASE COUNT 268 a 290 c 442 g 273 t 3103 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNNG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- NGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-NGGU- A-GGU-N-NA G-AA--GAAG ---------C 1141 -NCNGGCC-N AC-G--GUG( CGA--GCG-- ---------) ---------- |--------- 1201 ------UUGU CC-GGAAUUA -CU-GGGC|G UMAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-N)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UNGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUNN-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCN--- ---------- 1681 -(UNN-NU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UN-ACGGG-G -K-C-CC--G 1861 C-A--CA-AG CGGCGG-AGN A-U-GU-GGA -UUNAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUN ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GANA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UN U-)------- NG-------- ---------| CCU-GU-GUG |---N|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UNA|-G C-U---NG-U |GU-N(-GUG A)-GAUGN-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UNA- 2281 UG--UNGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-N- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C NA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUNCM AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- N)-GACCCCA -UGNAGU-CG -GAGU-CGC- -UAGUA-AUN 3001 GC-AGA-(UC -MGCNAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intce4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. serovar 4 ATCC 35767. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. serovar 4 ATCC 35767. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Boeddinghaus,B., Wolters,J., Heikens,W. and Boettger,E.C. TITLE Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level JOURNAL FEMS Microbiol. Lett. 70, 197-204 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35767 isolate_name= serovar 4 BASE COUNT 131 a 153 c 200 g 127 t 3765 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intce7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. serovar 7 ATCC 35847. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. serovar 7 ATCC 35847. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Boeddinghaus,B., Wolters,J., Heikens,W. and Boettger,E.C. TITLE Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level JOURNAL FEMS Microbiol. Lett. 70, 197-204 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35847 isolate_name= serovar 7 BASE COUNT 132 a 149 c 198 g 130 t 3767 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intr23 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61682 BASE COUNT 287 a 315 c 461 g 289 t 3024 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----NC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----R--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- C)-GACCCCA -UGNAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-N CUG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.int118 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. 1-18 (Brennan#30). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. 1-18 (Brennan#30). ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61683 isolate_name= 1-18 (Brennan#30) BASE COUNT 286 a 315 c 462 g 288 t 3025 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNGN-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GRGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CRAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCNNC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-N CUG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.int119 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. 1-19 (Brennan#31). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. 1-19 (Brennan#31). ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61684 isolate_name= 1-19 (Brennan#31) BASE COUNT 292 a 318 c 463 g 288 t 3015 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCNAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intc18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. serovar 18 ATCC 35770. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. serovar 18 ATCC 35770. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Boeddinghaus,B., Wolters,J., Heikens,W. and Boettger,E.C. TITLE Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level JOURNAL FEMS Microbiol. Lett. 70, 197-204 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35770 isolate_name= serovar 18 BASE COUNT 131 a 151 c 200 g 127 t 3767 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intc12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. serovar 12 ATCC 35762. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. serovar 12 ATCC 35762. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Boeddinghaus,B., Wolters,J., Heikens,W. and Boettger,E.C. TITLE Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level JOURNAL FEMS Microbiol. Lett. 70, 197-204 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35762 isolate_name= serovar 12 BASE COUNT 131 a 151 c 201 g 126 t 3767 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ....G-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-UA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intcel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. SN 424 ATCC 15985. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. SN 424 ATCC 15985. ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15985 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52927 Former RDP Sids: Myb.int985 ATCC 15985 = JCM 6384 = ATCC 13950 = DSM 43223 (T) = NCTC 10682 isolate_name= SN 424 BASE COUNT 318 a 340 c 492 g 296 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUN-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-UA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intr83 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. 8-3 (Brennan#36). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. 8-3 (Brennan#36). ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61686 isolate_name= 8-3 (Brennan#36) BASE COUNT 290 a 307 c 462 g 280 t 3037 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUN-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UN--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAN -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-UA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNNN-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCN -(NNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GN 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACN N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 N-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- N)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.int113 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intracellulare str. 1-13 (Brennan#29). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intracellulare str. 1-13 (Brennan#29). ORGANISM Mycobacterium intracellulare. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61685 isolate_name= 1-13 (Brennan#29) BASE COUNT 290 a 318 c 461 g 286 t 3021 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-UA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UNNN-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCANC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.int937 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. 3937. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. 3937. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29555 isolate_name= 3937 BASE COUNT 278 a 308 c 450 g 277 t 3063 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-UA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UNUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----U----- -UG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UNCG)--G GAG-GC-AG- C-A---NU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GN 961 G-G-GG-G-A U-GAC--G-G CN(--UU-CG --)GG-UUGU NAA--CCNN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGNN-A ACUAC-GUG( CCA--GYWGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NNG-CGUUGU CC-GGAAUUA -CU-GGGC|G UWAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|Y NNU---UCGU G-AAA-UC-U CA-CGG-C(- UN-A)A-CUG -UG-A-GCG- 1321 -UGCN-NGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-NCGGG-G -G-C-CC--G 1861 C-N--CN-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNK--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GN(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACN AUGGC-C-GG -UA--CNAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNC- UCNGUUCGGA 2941 U-UGGGGUC- (UGCRAC-U- C)-GACCCCA -UGAAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-G CUG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.scrofu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium scrofulaceum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium scrofulaceum. ORGANISM Mycobacterium scrofulaceum. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52924 ATCC 19981 = NCTC 10803 BASE COUNT 316 a 346 c 497 g 292 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAN-NUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGC-UC --AC-----( ------UUU- ---------) -----GU-GG 1081 ---------- -------G-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.inmedm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium intermedium.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium intermedium. ORGANISM Mycobacterium intermedium. REFERENCE 1 AUTHORS Meier,A., Kirschner,P., Schroeder,K.H., Wolters,J., Kroppenstedt,R.M. and Boettger,E.C. TITLE Mycobacteriun intermedium sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 204-209 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67847 BASE COUNT 315 a 347 c 496 g 283 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACAC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--U-C- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UAGGA----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----CGCA- ---------) ---------- 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.kansa3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium kansasii.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium kansasii. ORGANISM Mycobacterium kansasii. REFERENCE 1 AUTHORS Ross,B.C., Jackson,K., Yang,M., Sievers,A. and Dwyer,B. TITLE Identification of a genetically distinct sub-species of Mycobacterium kansasii JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95469 BASE COUNT 55 a 68 c 93 g 52 t 4108 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....C|-A 61 AUUACC-CAC -UACG-UU-- GGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACAC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CC...(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.kansa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium kansasii str. SN 502 DSM 43224. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium kansasii str. SN 502 DSM 43224. ORGANISM Mycobacterium kansasii. REFERENCE 1 AUTHORS . Edwards,U., Rogall,T., Bloecker,H., Emde,M. and Boettger,E.C TITLE entire genes. Characterization of a gene coding for 16S ribosomal RNA Isolation and direct complete nucleotide determination of JOURNAL Nucleic Acids Res. 17, 7843-7843 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 43224 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X15916 isolate_name= SN 502 BASE COUNT 318 a 351 c 498 g 291 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACAC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-NGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gastri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gastri str. W-417 ATCC 15754 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gastri str. W-417 ATCC 15754 (T). ORGANISM Mycobacterium gastri. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15754 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52919 isolate_name= W-417 BASE COUNT 318 a 349 c 498 g 290 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACAC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAN-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAG....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.kansas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium kansasii str. G133 (A. Pollak) ATCC 12478. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium kansasii str. G133 (A. Pollak) ATCC 12478. ORGANISM Mycobacterium kansasii. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 12478 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29575 ATCC 12478 = TMC 1204 isolate_name= G133 (A. Pollak) BASE COUNT 287 a 321 c 467 g 282 t 3019 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUG---C -ACAC-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-CNCNAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NN-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCNGUUCGGA 2941 U-CGGGGUC- (UGCNAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.malmo1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium malmoense str. Mo 816 ATCC 29571 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium malmoense str. Mo 816 ATCC 29571 (T). ORGANISM Mycobacterium malmoense. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29571 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61666 isolate_name= Mo 816 BASE COUNT 291 a 311 c 465 g 279 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CC-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- GUG---G-|G CNNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GNN|U NGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-N-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNN- UCAGUUCGGA 2941 U-CGGGGUC- (UGCANC-U- C)-GACCCNG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.malmo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium malmoense str. Mo 816 ATCC 29571 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium malmoense str. Mo 816 ATCC 29571 (T). ORGANISM Mycobacterium malmoense. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29571 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52930 isolate_name= Mo 816 BASE COUNT 318 a 347 c 500 g 292 t 2919 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CC-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.haemph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium haemophilum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium haemophilum. ORGANISM Mycobacterium haemophilum. REFERENCE 1 AUTHORS Fritzinger,D.C., Hadfield,T.L. and Artenstein,A. TITLE Sequence of the 16S ribosomal RNA from Mycobacterium haemophilum JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24800 BASE COUNT 333 a 363 c 511 g 310 t 2859 others ORIGIN 1 .......... .......... .......... .......... ......(G-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---U UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-CC-(CCA A)-GCC-UGA UGAA|-GCGA UGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAA ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -AA--CAAAG GGC-U-G-C- GA-UGC-C(C 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAA -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UA-CC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.haemp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium haemophilum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium haemophilum. ORGANISM Mycobacterium haemophilum. REFERENCE 1 AUTHORS Zappe,C.H., Barlow,D., Zappe,H., Bolton,I.J., Roditi,D. and Steyn,L.M. TITLE 16S rRNA sequence analysis of an isolate of Mycobacterium haemophilum from a heart transplant patient JOURNAL J. Med. Microbiol. 43, 189-191 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06638|g458437 biol_source= 54-yr-old male with endstage cardiac failure NB: has a 98.5% identity to M. marinum, accession X52920 BASE COUNT 324 a 353 c 505 g 306 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---U UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.leprae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Liesack,W., Pitulle,C., Sela,S. and Stackerbrandt,E. TITLE leprae Nucleotide sequence of the 16S rRNA from Mycobacterium JOURNAL Nucleic Acids Res. 18, 5558-5558 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56657 NB: X56657 completes the molecule from pos. 1523-1548. BASE COUNT 344 a 365 c 513 g 326 t 2828 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CU --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CACU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61681 BASE COUNT 185 a 203 c 265 g 167 t 3556 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.GAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CACU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Sela,S. and Clark-Curtiss,J.E. TITLE Cloning and characterization of the Mycobacterium leprae putative ribosomal RNA promoter in Escherichia coli JOURNAL Gene 98, 123-127 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58020 BASE COUNT 59 a 44 c 75 g 62 t 4136 others ORIGIN 1 .......... .......... .......... ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G.|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Teske,A., Wolters,J. and Boettger,E.C. TITLE The 16S rRNA nucleotide sequence of Mycobacterium leprae : phylogenetic position and development of DNA probes JOURNAL FEMS Microbiol. Lett. 80, 213-238 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55022 legacy_attribute= cells provided by J. Gerdes, Forschungsinstitut Borstel, FRG BASE COUNT 327 a 335 c 481 g 300 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-....A A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CU --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CACU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GNUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae str. cosmid L471. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae str. cosmid L471. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Smith,D.R. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15186|g699323 (bases 2453 to 3999) Ref 1: Genome Therapeutics Corp., Waltham MA isolate_name= cosmid L471 NB: sequence reversed & complemented from that of GB entry BASE COUNT 344 a 363 c 513 g 327 t 2829 others ORIGIN 1 .......... .......... .......... .UUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CU(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CU --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-CGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CACU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepML1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae str. armadillo grown. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae str. armadillo grown. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Cox,R.A., Kempsell,K.E., Fairclough,L. and Colston,M.J. TITLE The 16S ribosomal RNA of Mycobacterium leprae contains a unique sequence which can be used for identification by PCR JOURNAL J. Med. Microbiol. 35, 284-290 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58888 biol_source= clone NGS-COS-ML1 isolate_name= armadillo grown BASE COUNT 145 a 145 c 228 g 148 t 3710 others ORIGIN 1 .......... .......... .......... .UUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CU(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CU --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CG U-GA-C.... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae str. LTB. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae str. LTB. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55587 isolate_name= LTB BASE COUNT 328 a 350 c 490 g 308 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUCUAAA-AA (--AU----- ---------- ---------- 241 --------CU -)UU-UUUAG AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-CAGG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UU-C--A-A- ---GGC-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUN-N---UU 721 NG-UG-GG-( GU-NAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CU --GGG----( -----NNUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U NNU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUN-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AU----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CACU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --CG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.ulcrn2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium ulcerans.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium ulcerans. ORGANISM Mycobacterium ulcerans. REFERENCE 1 AUTHORS Hofer,M., Hirschel,B., Kirschner,P., Beghetti,M., Kaelin,A., Siegrist,C.A., Suter,S., Teske,A. and Bottger,E.C. TITLE Disseminated ostemyelitis from Mycobacterium ulcerans after a snakebite JOURNAL N. Engl. J. Med. 328, 1007-1007 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58954 BASE COUNT 318 a 345 c 496 g 297 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G ANUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------UC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UG--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.ulcrns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium ulcerans.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium ulcerans. ORGANISM Mycobacterium ulcerans. REFERENCE 1 AUTHORS Portaels,F., Fonteyne,P.-A., De Beenhouwer,H., de Rijk,P., Guedenon,A., Hayman,J. and Meyers,W.M. TITLE Variability in 3' end of 16S rRNA sequence of Mycobacterium ulcerans is related to geographical origin of isolates JOURNAL J. Clin. Microbiol. 34, 962-965 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z13990 BASE COUNT 311 a 340 c 491 g 296 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------UC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGGGGA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-N UA-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 ANCNUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---NAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UG--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUU-AACG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- UUUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.marinm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium marinum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium marinum. ORGANISM Mycobacterium marinum. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52920 BASE COUNT 324 a 354 c 504 g 306 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G ANUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------UC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.marin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium marinum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium marinum. ORGANISM Mycobacterium marinum. REFERENCE 1 AUTHORS Knibb,W., Colorni,A., Ankaoua,M., Lindell,D., Diamant,A. and Gordin,H. TITLE Detection and identification of a pathogenic marine Mycobacterium from the European seabass Dicentrarchus labrax using polymerase chain reaction and direct sequencing of 16S rDNA sequences JOURNAL Mol. Marine Biol. Biotechnol. 2 (4), 225-232 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S69216|g545075 BASE COUNT 129 a 143 c 213 g 127 t 3764 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAA--GCC- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------UC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UG....... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.tuber3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium tuberculosis str. H37/Rv. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium tuberculosis str. H37/Rv. ORGANISM Mycobacterium tuberculosis. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55588 isolate_name= H37/Rv BASE COUNT 309 a 341 c 481 g 285 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-CU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.bovis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium bovis str. vallee. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium bovis str. vallee. ORGANISM Mycobacterium bovis. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55589 isolate_name= vallee BASE COUNT 309 a 341 c 480 g 286 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-NGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-NC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-N-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium bovis str. BCG. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium bovis str. BCG. ORGANISM Mycobacterium bovis. REFERENCE 1 AUTHORS Suzuki,Y., Nagata,A., Ono,Y. and Yamada,T. TITLE Complete nucleotide sequence of the 16S rRNA gene of Mycobacterium bovis BCG JOURNAL J. Bacteriol. 170, 2886-2889 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20940 isolate_name= BCG BASE COUNT 333 a 365 c 523 g 314 t 2841 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.microt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium microti str. OV 254. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium microti str. OV 254. ORGANISM Mycobacterium microti. REFERENCE 1 AUTHORS Kempsell,K.E., Estrada,I.C.E., Colston,M.J. and Cox,R.A. TITLE RFLP analysis of the rRNA genes of representative members of the M. tuberculosis complex: taxonomic implications for species designation. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58889 isolate_name= OV 254 BASE COUNT 89 a 102 c 149 g 84 t 3952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUG- AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.tuberc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium tuberculosis str. H37/Rv. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium tuberculosis str. H37/Rv. ORGANISM Mycobacterium tuberculosis. REFERENCE 1 AUTHORS Boettger,E.C. JOURNAL Unpublished (1990) STANDARD No information COMMENTS legacy_attribute= but the sequence in genbank for X52917 is now that for Myb.tuber2 legacy_attribute= why is it longer on the 5' end? legacy_attribute= ?IS this a previous submission of Myb .tuber2; if so, isolate_name= H37/Rv NB: 93/6/9 - originally, acs X52917 was associated with this sequence BASE COUNT 302 a 337 c 490 g 298 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-C--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|C CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCU-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGY A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACU-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-NU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 GG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GU... C|C|G-CCU- G-GGGAGU.. 1801 ........(. ...)...... .......... .....GGAAU UG-ACGGG.. .......... 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUCUAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCNGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACC... .....GU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -A-CAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AGU--- --CCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG GUC-GG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.tuber4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium tuberculosis.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium tuberculosis. ORGANISM Mycobacterium tuberculosis. REFERENCE 1 AUTHORS .A. Kempsell,K.E., Ji,Y.E., Estrada,I.C., Colston,M.J. and Cox,R TITLE spacer region of the ribosomal RNA operon of Mycobacterium tuberculosis and comparison with Mycobacterium leprae precursor rRNA The nucleotide sequence of the promoter, 16S rRNA and JOURNAL J. Gen. Microbiol. 138, 1717-1727 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58890|g44669 (bases 622 to 2157) BASE COUNT 333 a 366 c 523 g 314 t 2840 others ORIGIN 1 .......... .......... .......... .UUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.tuber2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium tuberculosis str. H37/Rv. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium tuberculosis str. H37/Rv. ORGANISM Mycobacterium tuberculosis. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52917 isolate_name= H37/Rv NB: The start and stop correspond to E. coli 16S rRNA positions (40 and 1511, respectively). BASE COUNT 321 a 349 c 502 g 292 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GCG---- ---------- 601 --(------- ---CUUU--- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUCU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.szulga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium szulgai. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium szulgai. ORGANISM Mycobacterium szulgai. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52926 Former RDP Sids: Myb.szulg3 ATCC 35799 = NCTC 10831 (T) BASE COUNT 314 a 348 c 501 g 291 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CC-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCN(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.szulg2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium szulgai. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium szulgai. ORGANISM Mycobacterium szulgai. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61665 ATCC 35799 = NCTC 10831 (T) BASE COUNT 284 a 320 c 467 g 275 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CC-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- GUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(URCG)--G GAG-GC-NG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCNN| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UNAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NNU---UCGU N-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--N 1861 N-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GN-N AA)-CNC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-N-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-N-GNN- UCNGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-NGG-GG .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.conspc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium conspicuum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium conspicuum. ORGANISM Mycobacterium conspicuum. REFERENCE 1 AUTHORS Springer,B., Tortoli,E., Richter,I., Grunewald,R., Rusch-Gerdes,S., Uschmann,K., Suter,F., Collins,M.D., Kroppenstedt,R.M. and Bottger,E.C. TITLE Mycobacterium conspicium sp. nov., a new species isolated from patients with Disseminated Infections JOURNAL J. Clin. Microbiol. 33, 2805-2811 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X88922|g1070362 (bases 38 to 1433) BASE COUNT 295 a 339 c 477 g 285 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .....CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-CAC-GG) -C-CUACC-A A|-GGC-UC- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.consp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium conspicuum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium conspicuum. ORGANISM Mycobacterium conspicuum. REFERENCE 1 AUTHORS Guthke,R., Mauch,H., Fischer,M., Ansorage,S., Franke,I. and Gollnick,H.P.M. TITLE Generalised atypical mycobacteriosis in a patient with non-HIV-associated immunodeficiency and isolation of a new Mycobacterium species JOURNAL Eur. J. Dermatol. 6, 178-180 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X88563|g887518 Former RDP Sids: Myb.spT849 NB: former name Mycobacterium sp. BASE COUNT 92 a 114 c 164 g 91 t 3915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .AC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-CAC-GG) -C-CUACC-A A|-GGC-UC- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUU. ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gordon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gordonae str. P-15 ATCC 14470 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gordonae str. P-15 ATCC 14470 (T). ORGANISM Mycobacterium gordonae. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria . JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14470 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29563 isolate_name= P-15 BASE COUNT 294 a 320 c 470 g 282 t 3010 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACAU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--A-G- ---GAC-(-- --------AC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------G-C U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GNN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA NAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gordo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gordonae str. P-15 ATCC 14470 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gordonae str. P-15 ATCC 14470 (T). ORGANISM Mycobacterium gordonae. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14470 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52923 isolate_name= P-15 BASE COUNT 319 a 345 c 497 g 292 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACAU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--A-G- ---GAC-(-- --------AC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------G-C U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|N-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp333 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. 333. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. 333. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Garcia-Barcelo,M., Hernandez-Perez,M., Luquin,M. and Ausina,V . TITLE A new species of slowly growing mycobacteria detected in a clinical isolate JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U17276|g885642 isolate_name= 333 BASE COUNT 113 a 124 c 184 g 97 t 3858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACAU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--A-G- ---AAC-(-- --------AC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G U......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.intjec 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium interjectum str. 4185/92 DSM 44064. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium interjectum str. 4185/92 DSM 44064. ORGANISM Mycobacterium interjectum. REFERENCE 1 AUTHORS Springer,B., Kirschner,P., Rost-Meyer,G., Schroeder,K.-H., Kroppronstedt,R.M. and Boettger,E.C. TITLE Mycobacterium interjection, a new species isolated from a patient with chronic lymphadenitis JOURNAL J. Clin. Microbiol. 31, 3083-3089 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 44064 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70961|g509076 biol_source= child with cervical lymphadenitis isolate_name= 4185/92 BASE COUNT 312 a 348 c 496 g 283 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG----- ---------( -----CGCA- ---------) ---------- 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- CUUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.simiae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium simiae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium simiae. ORGANISM Mycobacterium simiae. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52931 BASE COUNT 315 a 347 c 496 g 284 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAN-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CN-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-NGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.tilbrg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium tilburgii.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium tilburgii. ORGANISM Mycobacterium tilburgii. REFERENCE 1 AUTHORS Vos,M.C., Bergmans,A.M., Buiting,A.G., Teepen,H., Juttman,J .R. and Schouls,L.M. TITLE Disseminated Infection with a Newly Identified Mycobacterial species in an immunocompetent patient JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z50172|g1177559 BASE COUNT 231 a 233 c 318 g 191 t 3403 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-AC-- UGUC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--GA-AA-G -A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-C C-CCUC---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-A- ---AGC-(-- --------GC 541 AU-------- -)-CC----- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AG--U-UCC -(UACG)--G GAG-GA-AG- --A---GU-G 901 GGG-AAUAUU U-CACAAU-G GGCGCA(GCA A)-GCC-UGA UGCA|-UCAA CCCC-CC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAAC- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAA ---------C 1141 -ACCGACC-A ACUAC-GUG( CCA--GCAAC CACGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-UCG|U UGU---UCGU GAUAAUAC-C GG-GGG-C(- UU-A)A-CUC -UC-G-GCU- 1321 -UGCG-GGCG A-UAC-GGAC A-AACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-UCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-UC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|C-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--- 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUCA-A-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UC. .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .UC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp8_18 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. 8/18. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. 8/18. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Hlawatsch,A., Pelz,K. and Goebel,U.B. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78957|g475211 isolate_name= 8/18 BASE COUNT 157 a 169 c 268 g 132 t 3650 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GANN 121 N--NN-NA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-A- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-C... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp.1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Jackson,K., Sievers,A., Ross,B.C. and Dwyer,B. TITLE Isolation of a fastidious mycobacterium species from two AIDS patients JOURNAL J. Clin. Microbiol. 30, 2934-2937 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M95488 BASE COUNT 309 a 340 c 485 g 279 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-G- ---AAC-(-- --------GC 541 AU-------- -)-GUU---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|C CC-GC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-GAAA CCC------| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- ---------- -----CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GG--A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.genave 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium genavense str. 2289 ATCC 51233 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium genavense str. 2289 ATCC 51233 (T). ORGANISM Mycobacterium genavense. REFERENCE 1 AUTHORS Boettger,E.C., Hirschel,B. and Coyle,M.B. TITLE Mycobacterium genavense sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 841-843 (1993) STANDARD No information REFERENCE 2 AUTHORS Boettger,E.C., Teske,A., Kirschner,P., Boost,B., Chang, H.R., Beer,V. and Hirschel,B. TITLE Disseminated "Mycobacterium genavense" infection in patients with AIDS JOURNAL Lancet 340, 76-80 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51233 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60070 Ref 1: Boettger et al. (1993) incorrectly list this as ATCC 51234 Former RDP Sids: Myb.geneve isolate_name= 2289 NB: former name Mycobacterium geneveuse BASE COUNT 315 a 346 c 495 g 289 t 2931 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-G- ---AAC-(-- --------GC 541 AU-------- -)-GUU---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CN-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCGA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. 94-92. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. 94-92. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Bosquee,L., Boettger,C., De Beenhouwer,H., Fonteyne,P.A., Hirschel,B., Larsson,L., Meyers,W.M., Palomino,J.C., Realini,L., Rigouts,L., Silva,M.T., Teske,A., Van der Auwera,P. and Portaels,F. TITLE Cervical lymphadenitis caused by a fastidious Mycobacterium closely related to Mycobacterium genavense in an apparently immunocompetent woman: diagnosis by culture-free methods JOURNAL J. Clin. Microbiol. 33, 2670-2674 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73630|g437881 isolate_name= 94-92 BASE COUNT 312 a 341 c 489 g 284 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-U CA-C--G-G- ---AAC-(-- --------GC 541 AU-------- -)-GUU---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CN-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-AGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lenfl3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium lentiflavum str. 89-446 ATCC 51988. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium lentiflavum str. 89-446 ATCC 51988. ORGANISM Mycobacterium lentiflavum. REFERENCE 1 AUTHORS Springer,B., Wu,W.-K., Bodmer,T., Haase,G., Emler,S., Pfyffer,G.E., Kroppenstedt,R.M., Schroeder,K.-H., Telenti,A., Coyle,M.B. and Boettger,E.C. TITLE Isolation and characterization of a unique group of slowly growing mycobateria: description of Mycobacteria lentiflavum sp. nov. JOURNAL J. Clin. Microbiol. 34, 1100-1107 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51988 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93995 isolate_name= 89-446 BASE COUNT 318 a 345 c 493 g 294 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lenfla 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium lentiflavum str. 2186/92 ATCC 51985 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium lentiflavum str. 2186/92 ATCC 51985 (T). ORGANISM Mycobacterium lentiflavum. REFERENCE 1 AUTHORS Springer,B., Wu,W.-K., Bodmer,T., Haase,G., Emler,S., Kilburn,J.O., Kirschner,P., Telenti,A., Coyle,M.B. and Boettger,E.C. TITLE Isolation and characterization of a unique group of slowly growing mycobateria: description of Mycobacteria lentiflavum sp. nov. JOURNAL J. Clin. Microbiol. 34, 1100-1107 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51985 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80769 isolate_name= 2186/92 BASE COUNT 306 a 344 c 487 g 284 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lenfl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium lentiflavum str. 439/93 ATCC 51986. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium lentiflavum str. 439/93 ATCC 51986. ORGANISM Mycobacterium lentiflavum. REFERENCE 1 AUTHORS Springer,B., Wu,W.-K., Bodmer,T., Haase,G., Emler,S., Pfyffer,G.E., Kroppenstedt,R.M., Schroeder,K.-H., Telenti,A., Coyle,M.B. and Boettger,E.C. TITLE Isolation and characterization of a unique group of slowly growing mycobateria: description of Mycobacteria lentiflavum sp. nov. JOURNAL J. Clin. Microbiol. 34, 1100-1107 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51986 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80770 isolate_name= 439/93 BASE COUNT 306 a 344 c 487 g 284 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-U--U-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- UU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-GGG-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UAA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.asiat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium asiaticum str. N6IH ATCC 25276. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium asiaticum str. N6IH ATCC 25276. ORGANISM Mycobacterium asiaticum. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25276 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55604 isolate_name= N6IH BASE COUNT 315 a 349 c 505 g 299 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UC----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUA-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.asiati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium asiaticum str. N6IH ATCC 25276. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium asiaticum str. N6IH ATCC 25276. ORGANISM Mycobacterium asiaticum. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25276 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29556 isolate_name= N6IH BASE COUNT 287 a 319 c 472 g 282 t 3016 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----U----- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGGU-CC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------A-U U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GNN|U UGU---UCGU G-AAA-UC-U CA-CGG-C(- UU-A)A-CUG -UG-A-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCUUUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.cookii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium cookii str. NZ2 ATCC 49103 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium cookii str. NZ2 ATCC 49103 (T). ORGANISM Mycobacterium cookii. REFERENCE 1 AUTHORS Kazda,J., Stackebrandt,E., Smida,J., Minnikin,D.E., Daffe,M., Parlett,J.H. and Pitulle,C. TITLE Mycobacterium cookii sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 217-223 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49103 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53896 isolate_name= NZ2 BASE COUNT 307 a 340 c 494 g 299 t 2936 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CNNG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-G- ---ACU-(-- --------NC 541 AU-------- -)-NGU---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----UGGG-- AU----N-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 NG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGN ----GU-C-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GCG-- AA-G-CC-CA --UAG-C--( -----UUUU- ---------) --GU-UG-UG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCN-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U NGU---CCGU G-AAA-UU-C CC-UNG-C(- UN-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUG-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGU-A--(- GAGA-)-UAU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGCU- ---------- UA-GCGAA-U CCUUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.brandr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium branderi str. H 52157 ATCC 51789 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium branderi str. H 52157 ATCC 51789 (T). ORGANISM Mycobacterium branderi. REFERENCE 1 AUTHORS Koukila-Kahkola,P., Springer,B., Boettger,E.C., Paulin,L., Jantzen,E. and Katila,M.-L. TITLE Mycobacterium branderi sp. nov., a new potential human pathogen JOURNAL Int. J. Syst. Bacteriol. 45, 549-553 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51789 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82234|g559487 Former RDP Sids: Myb.H52157 isolate_name= H 52157 BASE COUNT 301 a 332 c 492 g 291 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-...CA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-UC --AGC----( -----GUGUU ---------) ---G-UU-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UU-C CC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GGC 1981 -AUC-A--(- GAGA-)-UGG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -CGA)GGUU- ---------- UA-GCGAA-U CCUUGUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-GU-CG A-AGGU-GGG AUC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Brander,E., Jantzen,E., Huttunen,R., Julkunen,A. and Katila,M. TITLE Characterization of a distinct group of slowly growing mycobacteria by biochemical tests and lipid analyses JOURNAL J. Clin. Microbiol. 30, 1972-1975 (1992) STANDARD No information REFERENCE 2 AUTHORS Koukila-Kahkola,P.T., Paulin,L.G. and Brander,E.E. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26917|g407853 BASE COUNT 166 a 179 c 299 g 169 t 3563 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-CU (--UU----- ---------- ---------- 241 --------CG -)GG-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- --UUUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-CAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-UC --AGC----( -----GUGUU ---------) ---G-UU-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU----CGU G-AAA-UU-C CC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 C......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.celat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium celatum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium celatum. ORGANISM Mycobacterium celatum. REFERENCE 1 AUTHORS Butler,W.R., O'Connor,S.P., Yakrus,M.A., Smithwick,R.W., Plikaytis,B.B., Moss,C.W., Floyd,M.M., Woodley,C.L., Kilburn ,J.O., Vadney,F.S. and Gross,W.M. TITLE Mycobacterium celatum sp. nov JOURNAL Int. J. Syst. Bacteriol. 43, 539-548 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08170 BASE COUNT 315 a 347 c 516 g 300 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------NG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GGGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UC-C--G-A- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-UC --GGG----( -----UUUU- ---------) ---C-UC-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UU-C CC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.celat3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium celatum str. type 3 NCTC 12882. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium celatum str. type 3 NCTC 12882. ORGANISM Mycobacterium celatum. REFERENCE 1 AUTHORS Bull,T.J., Shanson,D.C., Archard,L.C., Yates,M.D., Hamid,M.E. and Minnikin,D.E. TITLE A new group (Type 3) of Mycobacterium celatum isolated from AIDS patients in the London area JOURNAL Int. J. Syst. Bacteriol. 45, 861-862 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 12882 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46664|g609090 isolate_name= type 3 BASE COUNT 316 a 354 c 520 g 304 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UC-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-GC --CGG----( -----UUUU- ---------) ---C-CG-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UU-C CC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.celatm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium celatum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium celatum. ORGANISM Mycobacterium celatum. REFERENCE 1 AUTHORS Butler,W.R., O'Connor,S.P., Yakrus,M.A., Smithwick,R.W., Plikaytis,B.B., Moss,C.W., Floyd,M.M., Woodley,C.L., Kilburn ,J.O., Vadney,F.S. and Gross,W.M. TITLE Mycobacterium celatum sp. nov JOURNAL Int. J. Syst. Bacteriol. 43, 539-548 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08169 BASE COUNT 312 a 341 c 509 g 297 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------NG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GGGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-GC --CGG----( -----UUUU- ---------) ---C-CG-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UU-C CC-UGG-C(- UU-A)A-CUG -GG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GU G......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.shimoi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium shimoidei.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium shimoidei. ORGANISM Mycobacterium shimoidei. REFERENCE 1 AUTHORS Koukila-Kahkola,P.T., Paulin,L.G. and Brander,E.E. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z27069 BASE COUNT 115 a 134 c 209 g 118 t 3800 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UUU---- ---------- ---------- 241 -------CGC -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-GC --GGG----( -----UUUU- ---------) ---C-UC-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-GAA-UG-C CA-CAG-C(- UU-A)A-CUG GUG-G-GCGG 1321 -UGCC-G... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.shimo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium shimoidei. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium shimoidei. ORGANISM Mycobacterium shimoidei. REFERENCE 1 AUTHORS Bottger,E.C. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82459|g575344 BASE COUNT 302 a 336 c 497 g 290 t 2951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CN-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --UC-GAC-- GA-AGCU-GC --GGG----( -----UUUU- ---------) ---C-UC-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-GAA-UG-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CU---- ---------- 1681 -(UUC-CU)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GNUU- ---------- AA-GCGAAUC CUUGUUAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.xenop3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium xenopi. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium xenopi. ORGANISM Mycobacterium xenopi. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52929 ATCC 19250 = NCTC 10042 (T) BASE COUNT 310 a 347 c 519 g 293 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UUU---- ---------- ---------- 241 -------UUU -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--U-C- ---UGC-(-- --------GC 541 AU-------- -)-GUG---- GG-GU----G GU-GGAAA-- ---GNG---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GUAG--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA-CCCUC| UUUC-AG-CC 1021 --UC-GAC-- GA-AGCU-GC --GGG----( -----UUUU- ---------) ---C-UC-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U UGU---UCGU G-GAA-UN-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GGCUG-GA GUG-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(UCC-UG)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- AA-GCGAA-U CCUUGGAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-C-GCG 3121 C-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-GC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.xenop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium xenopi. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium xenopi. ORGANISM Mycobacterium xenopi. REFERENCE 1 AUTHORS Kazda,J., Stackebrandt,E., Smida,J., Minnikin,D.E., Daffe,M., Parlett,J.H. and Pitulle,C. TITLE Mycobacterium cookii sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 217-223 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53895 ATCC 19250 = NCTC 10042 (T) BASE COUNT 206 a 220 c 334 g 177 t 3439 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 ..AU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--U-C- ---UGC-(-- --------GC 541 AU-------- -)-GUG---- GG-GU----G GU-GGAAA-- ---GUG---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GUAG--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-CC 1021 --UC-GAC-- GA-AGCU-NC --GGG----( -----UUUU- ---------) ---C-UC-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 ..GCG-GGCG A-UAC-GGGC A-GGCUG-GA GUG-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-N-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(UCC-UG)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .GAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- AA-GCGAA-U CCUUGGAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.xenop1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium xenopi. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium xenopi. ORGANISM Mycobacterium xenopi. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61664 ATCC 19250 = NCTC 10042 (T) BASE COUNT 288 a 316 c 483 g 283 t 3006 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UUU---- ---------- ---------- 241 -------UUU -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--U-C- ---UGC-(-- --------GC 541 AU-------- -)-GUG---- GG-GU----G GU-GGAAA-- ---GUG---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GUAG--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-CC 1021 --UC-GAC-- GA-AGCU-GC --GGG----( -----UUUU- ---------) ---C-UC-GU 1081 ---------- -------G-G U-GA-CGGU- A-GGG-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U UGU---UCGU G-GAA-UG-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GGCUG-GA GUG-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(UCC-UG)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -G-GCUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-NAC---- ---------- ---------- ---G(---UR ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- AA-GCGAA-U CCUUGGAAAG -CC-N-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUN- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.terra2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium terrae str. W-45 ATCC 15755. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium terrae str. W-45 ATCC 15755. ORGANISM Mycobacterium terrae. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15755 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52925 ATCC 15755 = NCTC 10856 (T) isolate_name= W-45 BASE COUNT 313 a 340 c 508 g 300 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUU---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GGC-- GA-AGCU-CC --GUG-G--( -----UUUU- ---------) --CU-GC-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- -U-------- 1681 -(UCC-UU)U ---------- ---------- -A-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.terra1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium terrae str. W-45 ATCC 15755. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium terrae str. W-45 ATCC 15755. ORGANISM Mycobacterium terrae. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15755 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29568 ATCC 15755 = NCTC 10856 (T) isolate_name= W-45 BASE COUNT 291 a 313 c 468 g 288 t 3016 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUU---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----U----- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GGC-- GA-AGCU-CC --GUN-G--( -----UUUU- ---------) --CU-GC-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- -U-------- 1681 -(UCC-UU)U ---------- ---------- -A-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.hibern 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium hiberniae str. Hi 11 ATCC 49874 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium hiberniae str. Hi 11 ATCC 49874 (T). ORGANISM Mycobacterium hiberniae. REFERENCE 1 AUTHORS Kazda,J., Cooney,R., Monaghan,M., Quinn,P.J., Stackebrandt,E ., Dorsch,M., Daffe,M., Mueller,K., Cook,B.R. and Tarnok,Z.S . TITLE Mycobacterium hiberniae sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 352-357 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49874 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67096|g437043 isolate_name= Hi 11 BASE COUNT 304 a 340 c 486 g 289 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----C- U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GGC-- GA-AGCU-CC --GUG-G--( -----UUUU- ---------) --CU-GC-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- -U-------- 1681 -(UCC-UU)U ---------- ---------- -A-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGU-A--(- GAGA-)-UAU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.nonch2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium nonchromogenicum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium nonchromogenicum. ORGANISM Mycobacterium nonchromogenicum. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52928 ATCC 19530 = NCTC 10424 (T) BASE COUNT 318 a 342 c 501 g 300 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GNC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CG-C--A-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --UC-GGC-- GA-AGCU-CC --AAG-G--( -----UUUU- ---------) --CU-UU-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-ACG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- -U-------- 1681 -(UCC-UU)U ---------- ---------- -A-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGU-A--(- GAGA-)-UAU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.nonchr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium nonchromogenicum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium nonchromogenicum. ORGANISM Mycobacterium nonchromogenicum. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29565 ATCC 19530 = NCTC 10424 (T) BASE COUNT 296 a 313 c 467 g 290 t 3010 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CG-C--A-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UGGN-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-UA 1021 --UC-GGC-- GA-AGCU-CC --AAG-G--( -----UUUU- ---------) --CU-UU-GG 1081 ---------- -------G-G U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-ACG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUN-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- -U-------- 1681 -(UCC-UU)U ---------- ---------- -A-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGU-A--(- GAGA-)-UAU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-Y AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UCC-C(G 2881 -UGA)GGGU- ---------- UA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-NGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gadium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gadium. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gadium. ORGANISM Mycobacterium gadium. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61663 BASE COUNT 284 a 305 c 461 g 271 t 3055 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UGUUUGG AGAGUU(U-K A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-C- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UNGN-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(NRCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCNN| UUUC-WG-UG 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGC-A-NA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCC|U NNU---UCGU G-AAA-AC-U CA-CAG-C(- UN-N)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NS-(UAA- ---C)G-CA- UUAA-GUACN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-NCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CRS---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-Y AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-N(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCNAAG -CC-G-GNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCWAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gadiu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gadium. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gadium. ORGANISM Mycobacterium gadium. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55594 BASE COUNT 313 a 345 c 504 g 294 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-C- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UG 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGC-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.fallax 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium fallax. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium fallax. ORGANISM Mycobacterium fallax. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29562 ATCC 35219 = CIP 8139 (T) BASE COUNT 295 a 312 c 464 g 272 t 3033 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-U CA-U--G-C- ---GCC-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GYAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(-UC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.trivia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium triviale. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium triviale. ORGANISM Mycobacterium triviale. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29571 BASE COUNT 278 a 316 c 465 g 269 t 3048 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UNUN--- ---)------ ---------| -----N--C- G--GUG---- 661 ----U----- -UG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-UAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCY -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GC-(GGA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AG-UC 1021 --AC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUN -CU-GGGC|G UNAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-UC-C CA-UGG-C(- UN-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUN-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UN-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SN-(UAA- ---C)G-CA- UUAA-GUACC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGU-A--(- GAGA-)-UAU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UU--CCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCNAAG -CC-G-GNC- UCNGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGNAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chita2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chitae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chitae. ORGANISM Mycobacterium chitae. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55603 BASE COUNT 320 a 345 c 498 g 294 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA AGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UC 1021 --AC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-A-CA G-AA--CAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAA-C(- UC-A)A-UUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chita1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chitae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chitae. ORGANISM Mycobacterium chitae. REFERENCE 1 AUTHORS Urbance,J.W., Key,R. and Stahl,D.A. TITLE Phylogenetic coherence of the Mycobacterium avium complex and origin within the slow-growing mycobacteria JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61662 BASE COUNT 250 a 314 c 460 g 274 t 3078 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-NUG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-GG- C-N---GU-G 901 GGG-AAUNUU G-CACCAU-- GG-GC-(GCA A)-GCC-UNA UGCN|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UN-CG --)GG-UUGU NAA--CCNN| UUUC-NG-UC 1021 --AC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-A-CA G-AA--GAAG ---------C 1141 -NCCGGCC-N ACUNC-GUG( CCA--GCNGC CGCGGUN-A) U-N-C-GNNG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUN -CU-GGGC|G NNAA-GAGC- UCG-UNG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAA-C(- UC-N)A-UUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUN-----CU G-CN-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUN-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UN---- --GC-(UNA- ---C)G-CN- UUNA-GUACC C|C|G-CCU- G-GGGAGUNC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUNAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC NA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUNCA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(N 2881 -UGN)AGGU- ---------G GA-GCGAA-U CCUUUCNAAG -CC-N-GNN- UCNGUUCGGA 2941 U-CGGGGUC- (UGCNAC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UNGUN-AUC 3001 GC-AGA-(UC -NGCNAC)-G CUG-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chita3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chitae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chitae. ORGANISM Mycobacterium chitae. REFERENCE 1 AUTHORS Lafay,B., Elbaze,P. and Christen,R. TITLE Phylogenetic analysis of the 16S rRNA sequence from mycobacterium chitae JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67874 BASE COUNT 299 a 331 c 477 g 280 t 2989 others ORIGIN 1 .......... .......... .........N NNUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---N-|- NCCGC----- -GG|----CC U--AUCN-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AANNUU G-CNNAAU-- GG-GC-(GCA A)-GCC-UGA UGCN|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-NG-UC 1021 --AC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGAA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAA-C(- UC-A)A-UUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CN-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUN A)-GANNU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AGCCC-UA-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUN|G 2701 G-GA-CU-C- G-UGN-GA-G A-CU-G-CNG --GG(-G... ..)....... ...GG-A-AG 2761 G-UG-GGN-N UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUANA AUGGC-C-GG -UA--NAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUNAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCN -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCAC- GUC-NCG--- --NCN-UNAA A--GU-CGG- UA-AC-ACCC -GAA---CCA 3121 G-UNG-C-CU -NA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGAGG-G-N G-C....... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.therm2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium thermoresistibile. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium thermoresistibile. ORGANISM Mycobacterium thermoresistibile. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55602 ATCC 19527 = NCTC 10409 (T) BASE COUNT 320 a 355 c 507 g 282 t 2912 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UC----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-G--C-UA ---GUC-(-- --------GC 541 AU-------- -)-GGC---C UA-GU----G GG-GGAAA-- ---GCG---- ---------- 601 --(------- ---UUUGU-- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UG 1021 --CC-GAC-- GA-AG-C--- ---------( -----GGAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGC-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUC-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(-UC-CU)- ---------- ---------- -G-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUGCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -GUCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium thermoresistibile. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium thermoresistibile. ORGANISM Mycobacterium thermoresistibile. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29570 ATCC 19527 = NCTC 10409 (T) BASE COUNT 291 a 318 c 475 g 267 t 3025 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-G--C-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GG-GGAAA-- ---GCG---- ---------- 601 --(------- ---UUUGU-- ---)------ ---------| ----AG--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)-GG GAG-GC-NG- C-A---GU-G 901 GGG-AAUAUU G-CACNAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUC| UUUC-AG-UG 1021 --CC-GAC-- GA-AG-C--- ---------( -----GGAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGC-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-N-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(-UC-CU)- ---------- ---------- -G-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUGCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.hassia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium hassiacum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium hassiacum. ORGANISM Mycobacterium hassiacum. REFERENCE 1 AUTHORS Schroder,K.H., Naumann,L., Kroppenstedt,R.M. and Reischl,U. TITLE Mycobacterium hassiacum sp. nov., a new rapidly growing thermophilic Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 47 (1), 86-91 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49401|g1480472 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 322 a 365 c 520 g 284 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUUC--- ---------- -------C-C UU-C--U-G- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----U GG-GGAAA-- ---GC----- ---------- 601 --(------- -GUUAUGUA- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CG 1021 --CC-GAC-- GA-AG----- ---------( -----CGUA- ---------) ---------- 1081 ---------- -------A-G U-GA-CGGU- A-GGC-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-UC-C CA-CGG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUG-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GC-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(-UC-CU)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -UCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CCA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUGCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGA--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chromo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. chromogen. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. chromogen. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29554 biol_source= bovine feces isolate_name= chromogen BASE COUNT 287 a 317 c 468 g 274 t 3030 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGU---- ---------- -------C-C CU-G--C-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GG-GNAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGN-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CRCAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CUU--- ---------- 1681 -(-UC-CU)- ---------- ---------- -A-------- -------AGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.smegm1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium smegmatis str. W-113 ATCC 14468. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium smegmatis str. W-113 ATCC 14468. ORGANISM Mycobacterium smegmatis. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE molecular level within the genus Mycobacterium Towards a phylogeny and definition of species at the JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14468 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52922|g44526 ATCC 14468 = TMC 1546 = NCTC 10265 = NCIMB 9953 isolate_name= W-113 NB: not the (T) strain BASE COUNT 317 a 344 c 501 g 287 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-G--C-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC--CU GG-UA----G GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.conflu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium confluentis.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium confluentis. ORGANISM Mycobacterium confluentis. REFERENCE 1 AUTHORS Kirschner,P., Teske,A., Shroder,K-H., Kroppenstedt,R.M., Wolters,J. and Bottger,E.C. TITLE Mycobacterium confluentis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 257-262 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63608 BASE COUNT 292 a 321 c 453 g 269 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-U--C-UG ---AUC-(-- --------GC 541 AU-------- -)-GGU--CU GG-GA----G GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --UC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GAU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-ACG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.madaga 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium madagascariense. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium madagascariense. ORGANISM Mycobacterium madagascariense. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55600 BASE COUNT 317 a 349 c 495 g 295 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-UCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UNC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-NN 481 AU-ACA---- ---------- -------C-C CU-G--C-UA ---GUA-(-- --------GC 541 AU-------- -)-UGC--CU GG-U-----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-A AG-CAC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG ACC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.flave2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium flavescens. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium flavescens. ORGANISM Mycobacterium flavescens. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52932 BASE COUNT 314 a 347 c 500 g 285 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-C CU-N--N-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC--CU GG-UA----G GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.flaves 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium flavescens. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium flavescens. ORGANISM Mycobacterium flavescens. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29561 BASE COUNT 293 a 316 c 468 g 275 t 3024 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-C CU-A--U-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC--CU GG-UA----G GG--GAAA-- ---GC----- ---------- 601 --(------- ---UNUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCG-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UY-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGNU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.phlei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium phlei. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium phlei. ORGANISM Mycobacterium phlei. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE corresponds to natural relationships among the mycobacteria The division between fast- and slow-growing species JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29566 ATCC 11758 = NCTC 8151 (T) BASE COUNT 291 a 316 c 468 g 278 t 3023 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACA---- ---------- -------C-C CU-U--C-UG ---GUU-(-- --------GC 541 AU-------- -)-GGC---U GG-GA----G GG--GAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UNU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GAC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CC-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Chomyc,S.A., Singh,J.A., Talbot,L., Thibert,L. and Emler,S. TITLE A novel mycobacterium susceptible to many antimicrobial agents JOURNAL ICAAC Conference, San Francisco 1995, Abstract #D76 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U46146|g1197447 BASE COUNT 316 a 354 c 507 g 292 t 2907 others ORIGIN 1 .......... .......... .......... .........U GGAG-N(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUA---- ---------- -------C-C CU-G--C-UG ---GUC-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GG-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UG 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-C GG-G-G-C(- UU-A)A-CCC -UC-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(C CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUG 1981 -CCU-A--(- GAGA-)-UAG -G-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUGUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.vaccae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium vaccae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium vaccae. ORGANISM Mycobacterium vaccae. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55601 BASE COUNT 316 a 350 c 490 g 289 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--CC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- NAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-U--C-UG ---GCU-(-- --------GC 541 AU-------- -)-UGU---C UG-GG----A GG-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCC-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---CCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C GA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AG...... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.spPYRI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. PYR-I (Fast Growing PAH Degrader). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. PYR-I (Fast Growing PAH Degrader). ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Govindaswami,M., Feldhake,D.J., Kinkle,B.K., Mindell,D.P. and Loper,J.C. TITLE Phylogenetic comparison of two polycyclic aromatic hydrocarbon-degrading Mycobacteria JOURNAL Appl. Environ. Microbiol. 61, 3221-3226 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U30662|g1000733 isolate_name= PYR-I (Fast Growing PAH Degrader) BASE COUNT 327 a 357 c 508 g 294 t 2890 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-U--C-UG ---GCU-(-- --------GC 541 AU-------- -)-GGU---C UG-GG----A GG-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUG 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. PYR-1. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. PYR-1. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Wang,R.F., Cao,W.W. and Cerniglia,C.E. TITLE Phylogenetic analysis of polycyclic aromatic hydrocarbon degrading mycobacteria by 16S rRNA sequencing JOURNAL FEMS Microbiol. Lett. 130, 75-80 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84977|g695640 biol_source= oil-contaminated sediments isolate_name= PYR-1 BASE COUNT 323 a 359 c 508 g 295 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-ACA---- ---------- -------C-C CU-U--C-UG ---GCU-(-- --------GC 541 AU-------- -)-GGU---C UG-GK----U GG-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUG 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aurum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium aurum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium aurum. ORGANISM Mycobacterium aurum. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55595 ATCC 23366 = NCTC 10437 (T) BASE COUNT 319 a 346 c 499 g 294 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 -------CCG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C UA-C--G-C- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUG 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aurum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium aurum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium aurum. ORGANISM Mycobacterium aurum. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29558 ATCC 23366 = NCTC 10437 (T) BASE COUNT 293 a 309 c 457 g 272 t 3045 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.UGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C UA-C--G-C- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ----UUU--- ---)------ ---------| -----N--C- G--GUG---- 661 ----UGGN-- NUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UNNG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 N-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U NGU---UCGU G-AAA-AC-U CA-CAG-C(- UN-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NN-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUG 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCNAAG -CC-G-GNC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chuben 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chubuense. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chubuense. ORGANISM Mycobacterium chubuense. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55596 ATCC 27278 = NCTC 10819 (T) BASE COUNT 313 a 349 c 503 g 293 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---CAU-(-- --------GC 541 AU-------- -)-GUG---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUG| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GCC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chlph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chlorophenolicum str. PCP-I DSM 43826 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chlorophenolicum str. PCP-I DSM 43826 (T). ORGANISM Mycobacterium chlorophenolicum. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a New Genus Including Dietzia maris comb.nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43826 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79292|g639978 DSM 43826 (T) = JCM 7439 = NCIMB 12325 biol_source= pentachlorophenol contamined sediment isolate_name= PCP-I BASE COUNT 319 a 352 c 505 g 290 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---UCU-(-- --------GC 541 AU-------- -)-GGA---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chlphe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chlorophenolicum str. PCP-I DSM 43826 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chlorophenolicum str. PCP-I DSM 43826 (T). ORGANISM Mycobacterium chlorophenolicum. REFERENCE 1 AUTHORS Briglia,M., Eggen,R.I., Van Elsas,D.J. and De Vos,W.M. TITLE Phylogenetic evidence for transfer of pentachlorophenol-mineralizing Rhodococcus chlorophenolicus PCP-1 to the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 44, 494-498 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 43826 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79094|g485935 DSM 43826 (T) = JCM 7439 = NCIMB 12325 biol_source= pentachlorophenol contamined sediment isolate_name= PCP-I BASE COUNT 326 a 365 c 528 g 313 t 2844 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~GUGGGGGU UUUUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -AAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---UCU-(-- --------GC 541 AU-------- -)-GGA---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GU-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG-C--UG GUUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chlph3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chlorophenolicum str. PCP-I NCIMB 12325. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chlorophenolicum str. PCP-I NCIMB 12325. ORGANISM Mycobacterium chlorophenolicum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81926 NCIMB 12325 = JCM 7439 = DSM 43826 (T) biol_source= pentachlorophenol contamined sediment isolate_name= PCP-I BASE COUNT 287 a 310 c 456 g 262 t 3061 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---UCU-(-- --------GC 541 AU-------- -)-GGA---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-UAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.obuens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium obuense. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium obuense. ORGANISM Mycobacterium obuense. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55597 ATCC 27023 = NCTC 10778 (T) BASE COUNT 318 a 348 c 499 g 293 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-G- ---CAU-(-- --------UC 541 AU-------- -)-GUG---- CU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAA-C(- UC-A)A-UUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--AA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUCCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gilvu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gilvum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gilvum. ORGANISM Mycobacterium gilvum. REFERENCE 1 AUTHORS Boettger,E.C. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81996|g556828 ATCC 43909 = NCTC 10742 (T) BASE COUNT 309 a 343 c 491 g 285 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CG-C--A-U- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.gilvum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium gilvum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium gilvum. ORGANISM Mycobacterium gilvum. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55599 ATCC 43909 = NCTC 10742 (T) BASE COUNT 316 a 346 c 498 g 297 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-UCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UUC---- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CG-C--A-U- ---GCU-(-- --------UC 541 AU-------- -)-AGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACC-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.aichie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium aichiense. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium aichiense. ORGANISM Mycobacterium aichiense. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55598 BASE COUNT 317 a 344 c 498 g 297 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. PAH135. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. PAH135. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Wang,R.F., Cao,W.W. and Cerniglia,C.E. TITLE Phylogenetic analysis of polycyclic aromatic hydrocarbon degrading mycobacteria by 16S rRNA sequencing JOURNAL FEMS Microbiol. Lett. 130, 75-80 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84978|g695639 legacy_attribute= received from R.J. Grosser, Univ. Cincinnati isolate_name= PAH135 BASE COUNT 319 a 345 c 499 g 290 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp135 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. RJGll.135 (Fast Growing Pyrene Degrader). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. RJGll.135 (Fast Growing Pyrene Degrader). ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Govindaswami,M., Feldhake,D.J., Kinkle,B.K., Mindell,D.P. and Loper,J.C. TITLE Phylogenetic comparison of two polycyclic aromatic hydrocarbon-degrading Mycobacteria JOURNAL Appl. Environ. Microbiol. 61, 3221-3226 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U30661|g1000732 isolate_name= RJGll.135 (Fast Growing Pyrene Degrader) BASE COUNT 327 a 352 c 508 g 297 t 2892 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-U CA-U--G-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.fortui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium fortuitum subsp. fortuitum ATCC 6841 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium fortuitum subsp. fortuitum ATCC 6841 (T). ORGANISM Mycobacterium fortuitum. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52933 Former RDP Sids: Myb.fortu1 BASE COUNT 320 a 338 c 494 g 291 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.fortu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium fortuitum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium fortuitum. ORGANISM Mycobacterium fortuitum. REFERENCE 1 AUTHORS Kirschner,P. TITLE Genetic heterogeneity within M.interjectum JOURNAL J. Clin. Microbiol. 30, 2772-2775 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65528|g509079 NB: Positions 1-418 correspond to E.coli positions 119-555 Positions 424-885 correspond to E.coli positions 887-1347 BASE COUNT 190 a 210 c 300 g 176 t 3500 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ..GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAG...... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN22 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN22.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN22. ORGANISM clone SMKN22. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78658|g509727 BASE COUNT 80 a 89 c 145 g 78 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN23 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN23.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN23. ORGANISM clone SMKN23. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78659|g509728 BASE COUNT 83 a 90 c 145 g 75 t 3983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------C- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-G- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG..... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.farcin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium farcinogenes. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium farcinogenes. ORGANISM Mycobacterium farcinogenes. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55592 NB: ATCC says that DSM 43294 is for Nocardia farcinia and not Mycobacterium farcinogenes BASE COUNT 313 a 334 c 484 g 285 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UA-C--G-C- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----A GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-GAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UUNCG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -AGU-A--(- GAGA-)-UAU -U-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- N)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.senega 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium senegalense. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium senegalense. ORGANISM Mycobacterium senegalense. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29567 ATCC 35796 = NCTC 10956 (T) BASE COUNT 297 a 309 c 462 g 279 t 3029 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U NNU---UCGU G-AAA-AC-U CA-CAG-C(- UY-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-NA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -AGU-A--(- GAGA-)-UAU -U-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.fortu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium fortuitum.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium fortuitum. ORGANISM Mycobacterium fortuitum. REFERENCE 1 AUTHORS Kirschner,P. TITLE Genetic heterogeneity within M.interjectum JOURNAL J. Clin. Microbiol. 30, 2772-2775 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65529|g509051 NB: Positions 1-418 correspond to E.coli positions 119-555 Positions 424-885 correspond to E.coli positions 887-1347 BASE COUNT 193 a 208 c 298 g 177 t 3500 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CG-C--G-C- ---UCU-(-- --------UC 541 AU-------- -)-GGG---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGNUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ..GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -AGU-A--(- GAGA-)-UAU -U-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAG...... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chelo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chelonae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chelonae. ORGANISM Mycobacterium chelonae. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52921 NB: GB entry dated 05-MAY-1993 lists this as M.fortuitum BASE COUNT 322 a 342 c 493 g 290 t 2929 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CG-C--G-C- ---ACU-(-- --------UC 541 CU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -AGU-A--(- GAGA-)-UAU -U-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.sp51 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sp. str. 51. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sp. str. 51. ORGANISM Mycobacterium sp. REFERENCE 1 AUTHORS Garcia Barcelo,M., Hernandez Perez,M., Ausina,V. and Luquin,M . TITLE A New species of Mycobacteria isolated from a clinical isolate JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U19366|g862381 isolate_name= 51 BASE COUNT 116 a 125 c 182 g 96 t 3857 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C AAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CCCC-GC-GU 961 G-A-GG-G-A U-GAC----U CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAGU.. ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chelo5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chelonae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chelonae. ORGANISM Mycobacterium chelonae. REFERENCE 1 AUTHORS Springer,B., Bottger,E.C., Kirschner,P. and Wallace,R.J. TITLE Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 262-267 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80773 BASE COUNT 225 a 262 c 362 g 212 t 3315 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-NC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GNAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGN N-NN...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ........NC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANNN-N 2221 N....(.... ...)...... .......... .......... AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chelo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chelonae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chelonae. ORGANISM Mycobacterium chelonae. REFERENCE 1 AUTHORS Springer,B., Bottger,E.C., Kirschner,P. and Wallace,R.J. TITLE Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 262-267 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80772 legacy_attribute= Mycobacterium chelonae like organism (MCLO ) BASE COUNT 228 a 261 c 360 g 214 t 3313 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGN N-NN...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ........NC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANNN-N 2221 N....(.... ...)...... .......... .......... AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.mucogn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium mucogenicum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium mucogenicum. ORGANISM Mycobacterium mucogenicum. REFERENCE 1 AUTHORS Springer,B., Bottger,E.C., Kirschner,P. and Wallace,R.J. TITLE Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 262-267 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80771 BASE COUNT 228 a 261 c 360 g 214 t 3313 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C CA-C--G-C- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AA-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGN N-NN...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ........NC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANNN-N 2221 N....(.... ...)...... .......... .......... AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.hodler 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium hodleri. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium hodleri. ORGANISM Mycobacterium hodleri. REFERENCE 1 AUTHORS Kleespies,M., Kroppenstedt,R.M., Rainey,F.A., Webb,L.E. and Stackebrandt,E. TITLE Mycobacterium hodleri sp. nov., a new member of the fast-growing mycobacteria capable of degrading polycyclic aromatic hydrocarbons JOURNAL Int. J. Syst. Bacteriol. 46 (3), 683-687 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93184|g1480302 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 322 a 352 c 498 g 287 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CC-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-UAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.diernh 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium diernhoferi str. SN 1418 ATCC 19340 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium diernhoferi str. SN 1418 ATCC 19340 (T). ORGANISM Mycobacterium diernhoferi. REFERENCE 1 AUTHORS Pitulle,C., Dorsch,M., Kazda,J., Wolters,J. and Stackebrandt ,E. TITLE Phylogeny of rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19340 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55593 isolate_name= SN 1418 BASE COUNT 315 a 345 c 495 g 303 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UC----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -UC-GUGGG- UUA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CG-C--G-C- ---UCU-(-- --------UC 541 AU-------- -)-GGG---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-UC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-AC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUG-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --NC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GAAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.neoaur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium neoaurum. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium neoaurum. ORGANISM Mycobacterium neoaurum. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29564 ATCC 25795 = NCTC 10818 (T) BASE COUNT 290 a 312 c 462 g 280 t 3032 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-U CA-U--C-G- ---GCU-(-- --------UC 541 AU-------- -)-GGU---- CG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UNNG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CRCAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUY| UUUC-AG-CA 1021 --CA-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-UGU-G-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCN|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCNGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGNAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCNAC)-G CUG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.absce2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium abscessus str. L948 ATCC 19977 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium abscessus str. L948 ATCC 19977 (T). ORGANISM Mycobacterium abscessus. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19977 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29559 Former RDP Sids: Myb.chelon ATCC 19977 (T) = DSM 43491 isolate_name= L948 NB: former name Mycobacterium chelonae BASE COUNT 305 a 311 c 450 g 276 t 3034 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUGUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-C- ---ACU-(-- --------UC 541 AU-------- -)-GGU---- GA-GU----G GU-GCAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-CA N-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U YGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --SS-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUA 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-N NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-AGC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.absces 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium abscessus str. L948 ATCC 19977 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium abscessus str. L948 ATCC 19977 (T). ORGANISM Mycobacterium abscessus. REFERENCE 1 AUTHORS Springer,B., Bottger,E.C., Kirschner,P. and Wallace,R.J. TITLE Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 262-267 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19977 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82235 ATCC 19977 (T) = DSM 43491 isolate_name= L948 BASE COUNT 240 a 257 c 350 g 214 t 3315 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-C- ---ACU-(-- --------UC 541 AU-------- -)-GGU---- GA-GU----G GU-GCAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGN N-NN...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ........NC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GUA 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANNN-N 2221 N....(.... ...)...... .......... .......... AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-AGC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.chelo6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium chelonae. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium chelonae. ORGANISM Mycobacterium chelonae. REFERENCE 1 AUTHORS Springer,B., Bottger,E.C., Kirschner,P. and Wallace,R.J. TITLE Phylogeny of the Mycobacterium chelonae-like organism based on partial sequencing of the 16S rRNA gene and proposal of Mycobacterium mucogenicum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 262-267 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82236 BASE COUNT 239 a 258 c 351 g 213 t 3315 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... ......GGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A-C- ---ACU-(-- --------UC 541 AU-------- -)-GGU---- GA-GU----G GU-GCAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------G 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGN N-NN...... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... ........NC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------G ---CAGG--- -AC----GUA 1981 -UCU-A--(- GAGA-)-UAG -G-UAUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GC-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GANNN-N 2221 N....(.... ...)...... .......... .......... AACCC-UU-G |-UC--CUA- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-UAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.spha26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium sphagni str. Sph29 ATCC 33026. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium sphagni str. Sph29 ATCC 33026. ORGANISM Mycobacterium sphagni. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33026 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55590 isolate_name= Sph29 NB: not the type strain BASE COUNT 315 a 344 c 496 g 295 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUG---- ---------- -------A-C CA-U--G-C- ---UCU-(-- --------UC 541 AU-------- -)-GGG---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUNGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UN-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUN-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-N-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUUCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAG)-G CUG-CGGUG- AAUAC-GUU- CUN-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.komoss 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium komossense str. Ko2 ATCC 33013 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium komossense str. Ko2 ATCC 33013 (T). ORGANISM Mycobacterium komossense. REFERENCE 1 AUTHORS Wolters,J. and Stackebrandt,E. TITLE Phylogeny of the rapidly growing members of the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 42, 337-343 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33013 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55591 isolate_name= Ko2 BASE COUNT 320 a 345 c 496 g 297 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUGUUUGG AGAGUU(U-G A)U-UCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-G- ---ACU-(-- --------UC 541 AC-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUC-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U UGU---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUG-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CU)- ---------- ---------- -U-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CAGG--- -AC----GCG 1981 -CCU-A--(- GAGA-)-UAG -G-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCU-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCUUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CCUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pulmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella pulmonis. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella pulmonis. ORGANISM Tsukamurella pulmonis. REFERENCE 1 AUTHORS Yassin,A.F., Rainey,F.A., Brzezinka,H., Burghardt,J., Rifai ,M., Seifert,P., Feldmann,K. and Schaal,K.P. TITLE Tsukamurella pulmonis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (2), 429-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92981|g1304365 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 325 a 354 c 493 g 288 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-C- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGGA-- -UC----G-C 1981 -CGG-A--(- GAGA-)-UUC -G-GUUU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pauro6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum.. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE Phylogeny of Tsukamurella paurometabola JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z37151|g1143604 BASE COUNT 329 a 356 c 497 g 292 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGGA-- -UC----G-C 1981 -CGG-A--(- GAGA-)-UUC -G-GUUU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AN)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pauro4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80628|g671658 DSM 20162 (T) = ATCC 8368 = NCTC 20741 BASE COUNT 332 a 361 c 500 g 295 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CACCA-- -UC----G-C 1981 -CGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGG--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.inchon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella inchonensis str. IMMIB D-771 DSM 44067 (T). ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella inchonensis str. IMMIB D-771 DSM 44067 (T). ORGANISM Tsukamurella inchonensis. REFERENCE 1 AUTHORS Yassin,A.F., Rainey,F.A., Brzezinka,H., Burghardt,J., Lee,H .J. and Schaal,K.P. TITLE A new species of Tsukamurella, Tsukamurella inchonensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 522-527 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44067 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85955|g1000517 isolate_name= IMMIB D-771 BASE COUNT 328 a 359 c 507 g 295 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-NUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G G-CCUG---U -ACGU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGGA-- -UC----G-C 1981 -CGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGG--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pauro5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum str. N663 NCTC 10741. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum str. N663 NCTC 10741. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10741 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36933|g1019829 NCTC 10741 = IMET 7373 = DSM 43246 = ATCC 25938 isolate_name= N663 BASE COUNT 327 a 356 c 501 g 292 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGCA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGGA-- -UC----G-C 1981 -CGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pauro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum str. N663 NCTC 10741. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum str. N663 NCTC 10741. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Collins,M.D., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Tsukamurella gen. nov. harboring Corynebacterium paurometabolum and Rhodococcus aurantiacus JOURNAL Int. J. Syst. Bacteriol. 38, 385-391 (1988) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10741 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53207 NCTC 10741 = IMET 7373 = DSM 43246 = ATCC 25938 isolate_name= N663 BASE COUNT 287 a 302 c 430 g 268 t 3089 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ...UCAAUGG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AUCA-AG (--CU----- ---------- ---------- 241 --------NG -)CU-NNGU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CUG|-A.... .......... 361 .......... ........AC -NC-GUGGG- UGN--CCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UUGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-N--C-U- ---CCU-(-- --------GN 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-NG| -N-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-N ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGYA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| NUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GNAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GNGC- UCG-UAG-GC -N|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUNNA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGNCG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUAU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GNG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUNCN AUGGC-G-CG -UA--CAGNG GGC-U-N-C- GA-UAC-C(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGNAAC-U- N)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGN-(UC -AGNAAC)-G C......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.pauro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Collins,M.D., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Tsukamurella gen. nov. harboring Corynebacterium paurometabolum and Rhodococcus aurantiacus JOURNAL Int. J. Syst. Bacteriol. 38, 385-391 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53206 DSM 20162 (T) = ATCC 8368 = NCTC 20741 BASE COUNT 288 a 313 c 435 g 269 t 3071 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ........AC -NC-GUGGG- UGN--CCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UUGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-N--C-U- ---CCU-(-- --------GN 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-NG| -N-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-N ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| NUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GNGC- UCG-UAG-GC -N|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUNNA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGNCG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUAU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GNG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUNCN AUGGC-G-CG -UA--CAGNG GGC-U-N-C- GA-UAC-C(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGNAAC-U- N)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGN-(UC -AGNAAC)-G CUG-CGGUN- NAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- NUC-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -NA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.paurom 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella paurometabolum. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella paurometabolum. ORGANISM Tsukamurella paurometabolum. REFERENCE 1 AUTHORS Collins,M.D., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Tsukamurella gen. nov. harboring Corynebacterium paurometabolum and Rhodococcus aurantiacus JOURNAL Int. J. Syst. Bacteriol. 38, 385-391 (1988) STANDARD No information COMMENTS DSM 20162 (T) = ATCC 8368 = NCTC 20741 BASE COUNT 290 a 314 c 437 g 270 t 3065 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ........AC -NC-GUGGG- UGN--CCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UUGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-N--C-U- ---CCU-(-- --------GN 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-NG| -N-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| NUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-U-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -N|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-AC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UUNNA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---GAGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUAU--- ---------- ---GC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AG U-)------- GC-------- ---------| CUU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-G AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU NAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUNCN AUGGC-G-CG -UA--CAGAG GGC-U-N-C- GA-UAC-C(G 2881 -UNA)GGUG- ---------- GA-GCGAA-U CCCUN-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGNAAC-U- N)-GACCCNA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGN-(UC -AGNAAC)-G CUG-CGGUN- NAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- NUC-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -NA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.F.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.15.2 CORYNEBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.15.2 CORYNEBACTERIUM_GROUP. ORGANISM 2.16.1.15.2 CORYNEBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN17.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN17. ORGANISM clone SMKN17. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78657|g509726 BASE COUNT 77 a 91 c 144 g 80 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-C CU-U--C-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CG 1021 --GG-GAC-- GA-AG-C-U- ---------( -----UUCG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-G. .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN12 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN12.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN12. ORGANISM clone SMKN12. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78654|g509723 BASE COUNT 85 a 94 c 149 g 82 t 3966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------C- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-C CU-U--C-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-C- 1021 --GG-GAC-- GA-AG-C-U- ---------( -----UUCG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CUU-G-GA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN29 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN29.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN29. ORGANISM clone SMKN29. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78661|g509730 BASE COUNT 69 a 79 c 128 g 68 t 4032 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....GGC-CC (--UU----- ---------- ---------- 241 --------C- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-C CU-U--C-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CU U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-U... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN14 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN14.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN14. ORGANISM clone SMKN14. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78655|g509724 BASE COUNT 88 a 92 c 141 g 74 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------A-C CU-U--C-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGG NACA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAG-- CA-AG-C--- ---------( -----G.... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN4.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN4. ORGANISM clone SMKN4. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78663|g509732 BASE COUNT 76 a 88 c 140 g 77 t 3995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .....GC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C-GC ---------( -----UUGCG ---------) --------GU 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.amara2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona amarae str. N667 ATCC 27808 (T). ACCESSION No information KEYWORDS No information. SOURCE Gordona amarae str. N667 ATCC 27808 (T). ORGANISM Gordona amarae. REFERENCE 1 AUTHORS Goodfellow,M., Chun,J., Stubbs,S. and Tobili,A.S. TITLE Transfer of Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona genus Gordona as Gordona amarae comb. nov. JOURNAL Lett. Appl. Microbiol. 19, 401-405 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27808 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75902|g609173 ATCC 27808 (T) = CIP 1774.88 isolate_name= N667 BASE COUNT 305 a 340 c 477 g 280 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACNU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUCG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-C-CCG 3121 G-UGU-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGANG-G-A G--U-GU-CG C-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.amara3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona amarae str. N667 ATCC 27808 (T). ACCESSION No information KEYWORDS No information. SOURCE Gordona amarae str. N667 ATCC 27808 (T). ORGANISM Gordona amarae. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27808 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80601|g599908 (bases 29 to 1395) Former RDP Sids: Noc.amarae ATCC 27808 (T) = CIP 1774.88 isolate_name= N667 NB: former name Nocardia amarae BASE COUNT 301 a 330 c 459 g 273 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------C- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUCG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANN C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.amarae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona amarae.. ACCESSION No information KEYWORDS No information. SOURCE Gordona amarae. ORGANISM Gordona amarae. REFERENCE 1 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80635|g562299 BASE COUNT 326 a 358 c 506 g 294 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG G)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- GG-UG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUCG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCC 1981 -GGC-A--(- GAGA-)-UGU -C-GGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN27 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN27.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN27. ORGANISM clone SMKN27. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78660|g509729 BASE COUNT 96 a 98 c 149 g 82 t 3951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-C- ---CUU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-NAA--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --GG-GAA-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-CA G-A....... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN15 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN15.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN15. ORGANISM clone SMKN15. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78656|g509725 BASE COUNT 85 a 97 c 148 g 80 t 3966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-C- ---CUU-(-- --------GC 541 AU-------- -)-GGG---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--CCUC| UUUU-AG-CA 1021 --GG-GCC-- GC-CG-N--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.hyphob 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona hydrophobica str. 1610/1b DSM 44015 (T). ACCESSION No information KEYWORDS No information. SOURCE Gordona hydrophobica str. 1610/1b DSM 44015 (T). ORGANISM Gordona hydrophobica. REFERENCE 1 AUTHORS Bendinger,B., Rainey,F.A., Kroppenstedt,R.M., Moormann,M. and Klatte,S. TITLE Gordona hydrophobica sp. nov., isolated from biofilters for waste gas treatment JOURNAL Int. J. Syst. Bacteriol. 45, 544-548 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44015 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87340|g853837 biol_source= packing material (tree bark compost) isolate_name= 1610/1b BASE COUNT 329 a 349 c 501 g 291 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---A -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--U-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UG-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGC-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-G-CG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CG-C-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.rubpe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona rubropertinctus. ACCESSION No information KEYWORDS No information. SOURCE Gordona rubropertinctus. ORGANISM Gordona rubropertinctus. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81915|g1061114 BASE COUNT 318 a 333 c 463 g 284 t 2978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGGGC-CU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.rubper 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona rubropertinctus.. ACCESSION No information KEYWORDS No information. SOURCE Gordona rubropertinctus. ORGANISM Gordona rubropertinctus. REFERENCE 1 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80632|g562304 BASE COUNT 336 a 351 c 497 g 300 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--NCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -UGU-A--(- GAGA-)-UAC -A-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN35 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN35.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN35. ORGANISM clone SMKN35. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78662|g509731 BASE COUNT 83 a 90 c 136 g 77 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)NN-NN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--U-G- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UG-GG----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UCCA|-GCCA UGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UUUU-GG-CG 1021 --GG-GAC-- GA-UA-A--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-CA G......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.terrae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona terrae. ACCESSION No information KEYWORDS No information. SOURCE Gordona terrae. ORGANISM Gordona terrae. REFERENCE 1 AUTHORS Stackebrandt,E., Smida,J. and Collins,M.D. TITLE Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura) JOURNAL J. Gen. Appl. Microbiol. 34, 341-348 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53202 Former RDP Sids: Gor.ter249 DSM 43249 = NCTC 10669 (T) = ATCC 25594 BASE COUNT 300 a 311 c 442 g 267 t 3056 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UNA--UCU-A C-CNNG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-A--C-U- ---GUC-(-- --------GC 541 AU-------- -)-NNU---- NG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUNU--- ---)------ ---------| -----G--C- G--GUN---- 661 ----UNGG-- AUG---G-|- CNNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -N|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-G UG-CAA-C(- UC-A)A-UUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUNCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-NUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- NG-------- ---------| UNG-GU-GUA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UC--CUN- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-N- G-CAG-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCUU-AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- N)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUU-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUNGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.terra2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona terrae.. ACCESSION No information KEYWORDS No information. SOURCE Gordona terrae. ORGANISM Gordona terrae. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information REFERENCE 2 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79286|g562306 BASE COUNT 331 a 352 c 503 g 295 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-A--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GC|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.terra3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona terrae. ACCESSION No information KEYWORDS No information. SOURCE Gordona terrae. ORGANISM Gordona terrae. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81922|g1061117 ATCC 25594 = NCTC 10669 (T) = DSM 43249 BASE COUNT 295 a 308 c 446 g 267 t 3060 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-A--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GG-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAA-C(- UC-A)A-UUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCN -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.aichi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona aichiensis. ACCESSION No information KEYWORDS No information. SOURCE Gordona aichiensis. ORGANISM Gordona aichiensis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81925|g1061219 BASE COUNT 298 a 307 c 443 g 270 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.aichie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona aichiensis.. ACCESSION No information KEYWORDS No information. SOURCE Gordona aichiensis. ORGANISM Gordona aichiensis. REFERENCE 1 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80633|g562298 BASE COUNT 331 a 348 c 493 g 297 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.sputi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona sputi. ACCESSION No information KEYWORDS No information. SOURCE Gordona sputi. ORGANISM Gordona sputi. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81924|g1061116 BASE COUNT 295 a 309 c 444 g 270 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A CU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.chbuen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus chubuensis. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus chubuensis. ORGANISM Rhodococcus chubuensis. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80627|g671618 BASE COUNT 335 a 350 c 498 g 301 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CA U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.sputi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona sputi.. ACCESSION No information KEYWORDS No information. SOURCE Gordona sputi. ORGANISM Gordona sputi. REFERENCE 1 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80634|g562305 BASE COUNT 335 a 352 c 498 g 301 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.sputi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona sputi. ACCESSION No information KEYWORDS No information. SOURCE Gordona sputi. ORGANISM Gordona sputi. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81927 CIP 1781.88 = ATCC 33609 BASE COUNT 299 a 307 c 441 g 271 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.sputi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona sputi. ACCESSION No information KEYWORDS No information. SOURCE Gordona sputi. ORGANISM Gordona sputi. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81923|g1061115 CIP 1833.89 (T) = ATCC 29627 BASE COUNT 299 a 307 c 441 g 271 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A UU-U--U-UC ---CUC-(-- --------GC 541 AU-------- -)-GGG---- GA-UU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -CA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCA 1981 -GUC-A--(- GAGA-)-UGG -C-UGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.bronc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona bronchialis.. ACCESSION No information KEYWORDS No information. SOURCE Gordona bronchialis. ORGANISM Gordona bronchialis. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information REFERENCE 2 AUTHORS Klatte,S., Rainey,F.A. and Kroppenstadt,R.M. TITLE Transfer of Rhodococcus aichiensis Tsukamura 1982 and Nocardia amarae Lechevalier and Lechevalier 1974 to the genus Gordona as Gordona aichiensis comb. nov. and Gordona amaraea comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 769-773 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79287|g562300 BASE COUNT 328 a 349 c 500 g 295 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GU-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.bronc4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona bronchialis. ACCESSION No information KEYWORDS No information. SOURCE Gordona bronchialis. ORGANISM Gordona bronchialis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81919|g1061112 CIP 1780.88 (T) = ATCC 25592 BASE COUNT 310 a 331 c 469 g 281 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGGG.... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.bronch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona bronchialis. ACCESSION No information KEYWORDS No information. SOURCE Gordona bronchialis. ORGANISM Gordona bronchialis. REFERENCE 1 AUTHORS Stackebrandt,E., Smida,J. and Collins,M.D. TITLE Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura) JOURNAL J. Gen. Appl. Microbiol. 34, 341-348 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53201 BASE COUNT 184 a 182 c 272 g 156 t 3582 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-A--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-SSUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -C|-GU-UU- 1261 G-UC-GCG|U CGU---CUNU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGCA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GNCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG --C-UCC--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG........ .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gor.bronc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gordona bronchialis.. ACCESSION No information KEYWORDS No information. SOURCE Gordona bronchialis. ORGANISM Gordona bronchialis. REFERENCE 1 AUTHORS Stubbs,S. and Collins,M.D. TITLE Assignment of Nocardia amarae to genus Gordona JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75903|g608715 (bases 70 to 1331) BASE COUNT 279 a 308 c 419 g 254 t 3116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .....CC-GG 481 AU-AUG---- ---------- -------A-C CA-A--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUU---- 661 ----GGGG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-SSUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -C|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-CAG-C(- UU-A)A-CUG -UA-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-UCA--- ---------- 1681 -(UUU-CA)- ---------- ---------- -C-------- -------GAG -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCG 1981 -GCU-A--(- GAGA-)-UAG -U-CGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUGU....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.pinens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia pinensis. ACCESSION No information KEYWORDS No information. SOURCE Nocardia pinensis. ORGANISM Nocardia pinensis. REFERENCE 1 AUTHORS Chun,J., Blackall,L.L., Kang,S.-O., Hah,Y.C. and Goodfellow ,M. TITLE A proposal to reclassify Nocardia pinensis Blackall et al. as Skermania pinensis gen. nov., comb. nov. JOURNAL Int. J. Syst. Bacteriol. 47, 122-126 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z35435|g663226 BASE COUNT 318 a 355 c 509 g 295 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---G -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-C- ---UGC-(-- --------GC 541 AU-------- -)-GUG---- GU-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUC---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UU 1021 --GG-GAC-- GA-AG-C-CU ---------( -----UUCG- ---------) --------GG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-U-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U CG-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUU-GA GUA-----CU C-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----GCU 1981 -GGU-A--(- GAGA-)-UAU -C-AGUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UA--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-U- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGU-U-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- CUUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dz.maris2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dietzia maris str. IMV 195. ACCESSION No information KEYWORDS No information. SOURCE Dietzia maris str. IMV 195. ORGANISM Dietzia maris. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a New Genus Including Dietzia maris comb.nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79290|g639964 DSM 43672 (T) = JCM 6166 = ATCC 35013 isolate_name= IMV 195; AUCNM-A-593; VKM Ac-593 BASE COUNT 336 a 355 c 496 g 288 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UC-C CU-CGG-C(- UU-A)A-CCG -GG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UC--CA)- ---------- ---------- -C-------- -------GGA -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AC----GAC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dz.maris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dietzia maris. ACCESSION No information KEYWORDS No information. SOURCE Dietzia maris. ORGANISM Dietzia maris. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E. TITLE Dietzia, a New Genus Including Dietzia maris comb.nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79291|g639963 DSM 46102 = VKM B-464 = IMET 7759 BASE COUNT 336 a 355 c 494 g 288 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UC-C CU-CGG-C(- UU-A)A-CCG -GG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UC--CA)- ---------- ---------- -C-------- -------GGA -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AC----GAC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN10c 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN10c.. ACCESSION No information KEYWORDS No information. SOURCE clone JN10c. ORGANISM clone JN10c. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69275|g1177260 BASE COUNT 70 a 61 c 104 g 63 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UC-C CU-CGG-C(- UU-A)A-CCG -GG-G-CCG- 1321 -UGCA-GGCG AAUAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGU C--UA-CU-- -------A|G -CG-UU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dz.maris3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dietzia maris str. IMV 195. ACCESSION No information KEYWORDS No information. SOURCE Dietzia maris str. IMV 195. ORGANISM Dietzia maris. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81920|g1061227 ATCC 35013 = JCM 6166 = DSM 43672 (T) isolate_name= IMV 195; AUCNM-A-593; VKM Ac-593 BASE COUNT 300 a 310 c 443 g 261 t 3062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------C- -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCCC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UC-C CU-CGG-C(- UU-A)A-CCG -GG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UC--CA)- ---------- ---------- -C-------- -------GGA -CUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AC----GAC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.GH557 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Podbielski,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76704|g840864 BASE COUNT 330 a 344 c 476 g 288 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UC -GAAC-GC-- UGGG-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CU (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -CGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G UCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--ACCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UUUC-AG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAAC CACGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UC-C UC-CAG-C(- UC-A)A-CUG -GG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU A-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GUA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AGCA-G AUAC)-CCU- ----GGUAAG UC----CAU- G-CC-GU--A 1621 AGC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GU-CCU--- ---------- 1681 -(UC--CA)- ---------- ---------- -C-------- -------GGA -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AC----GAC 1981 -GGC-A--(- GAGA-)-UGU -C-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUC A)-GAUGCUU 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UCA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUCUCG-CG- AUU-UGA... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN41 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN41.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN41. ORGANISM clone SMKN41. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78664|g509733 BASE COUNT 87 a 88 c 125 g 77 t 3999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ......AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--CU----- ---------- ---------- 241 --------UC -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---A-|G UCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AC-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-G|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-ACC -(UACG)--G GUG-GC-AG- C-A---GU-C 901 GAG-AAUAAU U-CACAAU-- GG-GG-(GCA A)-CCC-UGA UGGU|-GCAA CGCC-GC-GU 961 G-G-AG-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-AU-CU 1021 --GG-GAG-- UA-AG-A-CC .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.xeros2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium xerosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium xerosis. ORGANISM Corynebacterium xerosis. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02895|g455038 BASE COUNT 69 a 81 c 93 g 66 t 4067 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A U--ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGCA 2821 UUUCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACMCNG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCN- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGA UCG-G--CG- AUU-GG-A-C 3301 G---ANGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.xeros5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium xerosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium xerosis. ORGANISM Corynebacterium xerosis. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84446|g1067121 BASE COUNT 323 a 354 c 507 g 297 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUNCA A-NUC-GAAC 121 G--GU-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-AG (--CU----- ---------- ---------- 241 --------UC -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ----CC-(-- --------GU 541 GA-------- -)-GGG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GN- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CGGG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-A A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGGGG-G-A G-CU-GU-CG A-NGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG---UG G......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.xeros4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium xerosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium xerosis. ORGANISM Corynebacterium xerosis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81914|g1061111 BASE COUNT 288 a 307 c 453 g 267 t 3061 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ----CC-(-- --------GU 541 GA-------- -)-GGG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CGGG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-A A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.xerosi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium xerosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium xerosis. ORGANISM Corynebacterium xerosis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59058 BASE COUNT 316 a 341 c 498 g 297 t 2924 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CNNG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ----CC-(-- --------GU 541 GA-------- -)-GGG---- -U-GU----G NU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|N CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CGGG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUC-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-A A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ANG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.asperm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium asperum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium asperum. ORGANISM Corynebacterium asperum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82050|g1061055 BASE COUNT 288 a 305 c 455 g 272 t 3056 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ----CC-(-- --------GU 541 GA-------- -)-GGG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----GUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UUUCC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----CGC 1981 -GCC-A--(- GAGA-)-UGG -U-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- CA-GUC-C(G 2881 -UGA)GGGC- ---------- GA-GCUAA-U CCCGC-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.amyco2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium amycolatum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium amycolatum. ORGANISM Corynebacterium amycolatum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84244 BASE COUNT 320 a 343 c 504 g 306 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---GUG-(-- --------UG 541 GA-------- -)-UGC---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----GUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUR-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UUUCC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----CGC 1981 -GCC-A--(- GAGA-)-UGG -U-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- CA-GUC-C(G 2881 -UGA)GGGC- ---------- GA-GCUAA-U CCCGU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGN-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- CUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.amycol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium amycolatum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium amycolatum. ORGANISM Corynebacterium amycolatum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82057|g1061054 CIP 103452 (T) = ATCC 49368 BASE COUNT 307 a 328 c 474 g 290 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---GUG-(-- --------UG 541 GA-------- -)-UGC---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-AC-CA 1021 --UC-GAC-- GA-AG-G--- ---------( -----GUUU- ---------) ---------- 1081 ---------- -------C-- U-GA-CGGU- A-GAU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UUUCC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----CGC 1981 -GCC-A--(- GAGA-)-UGG -U-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- CA-GUC-C(G 2881 -UGA)GGGC- ---------- GA-GCUAA-U CCCGU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CU......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.globe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus globerulus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus globerulus. ORGANISM Rhodococcus globerulus. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80620|g671620 DSM 43953 = IMET 7542 = ATCC 25711 BASE COUNT 328 a 345 c 482 g 307 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUGA-AA-C CG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-C--C-A- ----CC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- --CUUAU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGC-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CCCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-C- ---------( ----UUAUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCCGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-CGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUUU G-AAA-UC-C CN-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.gluta2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium glutamicum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium glutamicum. ORGANISM Corynebacterium glutamicum. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80629|g669074 DSM 20300 (T) = NCIMB 10025 = ATCC 13032 = IAM 12435 (T) BASE COUNT 328 a 345 c 482 g 307 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUGA-AA-C CG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-C--C-A- ----CC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- --CUUAU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGC-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CCCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-C- ---------( ----UUAUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCCGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-CGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUUU G-AAA-UC-C CN-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA..).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.gluta3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium glutamicum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium glutamicum. ORGANISM Corynebacterium glutamicum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84257|g671833 NCIMB 10025 = ATCC 13032 = DSM 20300 (T) = IAM 12435 (T) BASE COUNT 315 a 335 c 461 g 296 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAC -GNAC-GC-- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUGA-AA-C CN-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UN -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-C--C-A- ----CC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- --CUUAU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-C- ---------( ----UUAUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA UUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-NCA 3121 G-UGG-C-CC -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.acacid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "acetoacidophilum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "acetoacidophilum". ORGANISM Corynebacterium "acetoacidophilum". REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84240|g671811 BASE COUNT 316 a 329 c 464 g 306 t 2961 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GN-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUGA-AA-C CA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----NA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-U--C-A- ----UC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-NCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-CU ---------( -----UUU-- ---------) --------AG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG-G-N G-UU-U.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.glutam 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium glutamicum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium glutamicum. ORGANISM Corynebacterium glutamicum. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE Phylogeny of Corynebacterium glutamicum JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46753|g577003 NCIMB 10025 = ATCC 13032 = DSM 20300 (T) = IAM 12435 (T) BASE COUNT 333 a 343 c 494 g 309 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUGA-AA-C CG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-C--C-A- ----CC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UG--GAAA-- ---GC----- ---------- 601 --(------- --UUUAU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-C- ---------( ----UUAUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.gluta4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium glutamicum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium glutamicum. ORGANISM Corynebacterium glutamicum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82061|g1061093 IAM 12435 (T) = NCIMB 10025 = ATCC 13032 = DSM 20300 (T) BASE COUNT 314 a 331 c 458 g 293 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GCUNN-AA-C CG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------UGG- UGG|-AU--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUA---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AUU---- ---------- -------C-A CA-C--C-A- ----CC-(-- --------GU 541 AG-------- -)-GGG---- UG-GU----G UN--GAAA-- ---GC----- ---------- 601 --(------- ---UUNU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-C- ---------( ----UUAUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GACGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-UA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -U.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.callun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium callunae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium callunae. ORGANISM Corynebacterium callunae. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84251|g671816 BASE COUNT 342 a 345 c 491 g 316 t 2882 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -G-AC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GAUGA-AG-C UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------AG (--CU----- ---------- ---------- 241 --------UG -)CU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------AGG- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---AUC-(-- --------UU 541 UA-C------ -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-A-G- ---------( ----UUACA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-ACU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- A-UGA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.callu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium callunae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium callunae. ORGANISM Corynebacterium callunae. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82053|g1061059 CCUG 28793 = ATCC 15991 (T) BASE COUNT 305 a 298 c 433 g 281 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GAUGA-AG-C UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------AG (--CU----- ---------- ---------- 241 --------UG -)CU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ------AGG- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GA 481 AU-AGG---- ---------- -------A-C AC-A--C-U- ---AUC-(-- --------UU 541 UA-C------ -)-GGU---- GG-UG----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-A-G- ---------( ----UUACA- ---------) ---------- 1081 ---------- -------U-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-ACU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CCGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UNNUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- A-UGA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG AGU-U-G-C- CA-CAC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAN)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.urealy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium urealyticum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium urealyticum. ORGANISM Corynebacterium urealyticum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81913|g1061109 BASE COUNT 312 a 323 c 468 g 296 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUU---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-A--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA-CCUCU| -UUC-GC-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-AACUG-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UUU--- ---------- 1681 -(-UU-CA)- ---------- ---------- -C-------- -------GAU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CAA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GA -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -UC-G-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-GCG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CU......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ureal2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium urealyticum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium urealyticum. ORGANISM Corynebacterium urealyticum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84439|g1067120 BASE COUNT 338 a 342 c 503 g 319 t 2874 others ORIGIN 1 .......... .......... .......... ..AUACGUGG AGAGUU(U-G A)U-NCU|-G 61 ACUCAG-GAC -GAAACNCUC UGNC-GNC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAN 121 NN-NA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-UG (--CU----- ---------- ---------- 241 --------UN -)CA-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUU---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-A--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----GAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA-CCUCU| -UUC-GC-UA 1021 --GG-GAA-- GA-AG-C-C- ---------( -----UUCG- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-AACUG-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UUU--- ---------- 1681 -(-UU-CA)- ---------- ---------- -C-------- -------GAU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-CAA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GA -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUG-AAAG -UC-G-GCC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-GCG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.jeikei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium jeikeium. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium jeikeium. ORGANISM Corynebacterium jeikeium. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84250|g671838 BASE COUNT 332 a 340 c 503 g 319 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-ACU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUCCU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA-CUCCU| -UUC-GC-UA 1021 --GG-GAA-- GA-AG-C-CA C--------( ------UGU- ---------) -------GUG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUA-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UUU--- ---------- 1681 -(UAU-UU)A ---------- ---------- -C-------- -------GAU -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-GCG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGG....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.jeike2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium jeikeium. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium jeikeium. ORGANISM Corynebacterium jeikeium. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82062|g1061095 CIP 103337 (T) = ATCC 43734 BASE COUNT 296 a 297 c 450 g 287 t 3046 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUCCU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA-CUCCU| -UUC-GC-UA 1021 --GG-GAA-- GA-AG-C--A C--------( ------UGU- ---------) -------GUG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUA-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UUU--- ---------- 1681 -(NAU-UU)A ---------- ---------- -C-------- -------GAU -UCCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.bovis3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium bovis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium bovis. ORGANISM Corynebacterium bovis. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84444 NCTC 3224 (T) = ATCC 7715 BASE COUNT 313 a 346 c 484 g 299 t 2934 others ORIGIN 1 .......... .......... .......... .........A AUGAGU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-AG (--CU----- ---------- ---------- 241 --------UN -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GC----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CC--AGCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------G ---CAGG--- -AC----CGG 1981 -CGU-G--(- GAGA-)-CAC -G-UCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGG------- ---------| CUU-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -CGA)GGCU- ---------- CA-GCUAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-N----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium bovis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium bovis. ORGANISM Corynebacterium bovis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Yanagawa,R. and Hiramune,T. TITLE Phylogenetic relationships between Corynebacteria pseudotuberculosis and other corinebacteria from livestock animals JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38575|g560771 ATCC 7715 = NCTC 3224 (T) BASE COUNT 306 a 333 c 472 g 291 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .........C 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-CC (--AN----- ---------- ---------- 241 --------NU -)GU-GGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GC----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCU| -UUC-GG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------G ---CAGG--- -AC----CGG 1981 -CGU-G--(- GAGA-)-CAC -G-UCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GG-------- ---------| CUU-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC..(. 2881 ....)..... .........U CA-GCUAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UCG-G-CC -AA-A----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AACU-- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.bovis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium bovis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium bovis. ORGANISM Corynebacterium bovis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82051|g1061058 NCTC 3224 (T) = ATCC 7715 BASE COUNT 302 a 332 c 464 g 286 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GC----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| UUUC-GG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAU -UUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-G- ---------G ---CAGG--- -AC----CGG 1981 -CGU-G--(- GAGA-)-CAC -G-UCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N U-)------- GGG------- ---------| CUU-GU-UCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-UGC-C(G 2881 -CGA)GGCU- ---------- CA-GCUAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAACG-C.. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.varia2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium variabilis str. AC 256 NCDO 2097 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium variabilis str. AC 256 NCDO 2097 (T). ORGANISM Corynebacterium variabilis. REFERENCE 1 AUTHORS Collins,M.D., Smida,J. and Stackebrandt,E. TITLE Phylogenetic evidence for the transfer of Caseobacter polymorphus (Crombach) to the genus Corynebacterium JOURNAL Int. J. Syst. Bacteriol. 39, 7-9 (1989) STANDARD No information COMMENTS Organism information Culture collection: NCDO 2097 (T) NCDO 2097 (T) = CCM 3383 = DSM 20536 = ATCC 33010 = IFM 3030 = DSM 20132 = ATCC 15753 = NCIMB 9455 (T) isolate_name= AC 256 isolate_name= FK 31 NB: =Cor.variab except for the deletion of 2 U's at the beginning of the sequence 93/6/12 - originally, X53185 was associated with this sequence but the sequence in genbank for X53185 is now that for Cor .variab BASE COUNT 320 a 331 c 471 g 301 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -CAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG.. .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...G-GCGA- 361 -A-C--GG-U GAGU---AAC -AC-GUNGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 AU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUNC| UNUC-AA-CC 1021 --AU-GAC-- GA-AG-C-A- ---------( -----UUA-- ---------) ---------U 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CUC -CG-G-NCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-NA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CCGG--- -AU----CGN 1981 -CGC-A--(- GAGA-)-UGC -G-UNUUC-- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-NG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-CAC-C(G 2881 -UNA)GGUN- ---------- GU-GCUAA-U CCCUN-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-A----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.variab 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium variabilis str. AC 256 NCIMB 9455 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium variabilis str. AC 256 NCIMB 9455 (T). ORGANISM Corynebacterium variabilis. REFERENCE 1 AUTHORS Collins,M.D., Smida,J. and Stackebrandt,E. TITLE Phylogenetic evidence for the transfer of Caseobacter polymorphus (Crombach) to the genus Corynebacterium JOURNAL Int. J. Syst. Bacteriol. 39, 7-9 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53185 NCIMB 9455 (T) = CCM 3383 = DSM 20536 = ATCC 33010 = NCDO 2097 (T) = IFM 3030 = DSM 20132 = ATCC 15753 isolate_name= AC 256 isolate_name= FK 31 BASE COUNT 320 a 331 c 471 g 303 t 2951 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. ..UUUGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -CAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ ---G-GCGA- 361 -A-C--GG-U GAGU---AAC -AC-GUNGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 AU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CUNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUNC| UNUC-AA-CC 1021 --AU-GAC-- GA-AG-C-A- ---------( -----UUA-- ---------) ---------U 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -N|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CUC -CG-G-NCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-NA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CCGG--- -AU----CGN 1981 -CGC-A--(- GAGA-)-UGC -G-UNUUC-- ---------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- NG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-NG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGUG GGU-U-G-C- GA-CAC-C(G 2881 -UNA)GGUN- ---------- GU-GCUAA-U CCCUN-AAAG -CC-G-GUC- UNAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- N)-GACUCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CC -AA-A----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81907|g1061100 legacy_attribute= biovar:equi BASE COUNT 312 a 326 c 463 g 293 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCC 3121 A-UGG-C-CC -AA-CCA... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Christen,R. and Monteil,H. TITLE Taxonomy of Corynebacterium diphtheriae and related taxa, with recognition of Corynebacterium ulcerans sp. nov. nom. rev. JOURNAL FEMS Microbiol. Lett. 126, 271-276 (1995) STANDARD No information REFERENCE 2 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen, R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81916|g784972 (bases 1 to 1396) CIP 102968 (T) = NCTC 3450 = ATCC 19410 legacy_attribute= biovar:ovis BASE COUNT 312 a 325 c 462 g 295 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCC 3121 A-UGG-C-CC -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis str. S1. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis str. S1. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Yanagawa,R. and Hiramune,T. TITLE Phylogenetic relationships between Corynebacteria pseudotuberculosis and other corinebacteria from livestock animals JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38578|g560774 isolate_name= S1 BASE COUNT 315 a 329 c 475 g 306 t 2951 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNN-NC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-ACG A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-N- NA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCC 3121 A-UGG-C-CC -NA-CCAG-- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGNNG-G-A G-UG-GU-CG .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstubr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis str. OR1. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis str. OR1. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Yanagawa,R. and Hiramune,T. TITLE Phylogenetic relationships between Corynebacteria pseudotuberculosis and other corinebacteria from livestock animals JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38576|g560772 isolate_name= OR1 BASE COUNT 327 a 332 c 491 g 312 t 2914 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNN-NN (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-N- NA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-N-NCC 3121 A-UCG-G-CC -AA-CCAG-- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AACU-- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis str. OT1. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis str. OT1. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Yanagawa,R. and Hiramune,T. TITLE Phylogenetic relationships between Corynebacteria pseudotuberculosis and other corinebacteria from livestock animals JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38577|g560773 isolate_name= OT1 BASE COUNT 327 a 333 c 490 g 313 t 2913 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNN-NC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-N- NA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UNG-N-CC -AA-CCAG-- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AACU-- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis.. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Yanagawa,R. and Hiramune,T. TITLE Phylogenetic relationships between Corynebacteria pseudotuberculosis and other corinebacteria from livestock animals JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38579|g560775 BASE COUNT 327 a 333 c 492 g 312 t 2912 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NNNN-NC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-N- NA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UCG-G-CC -AA-CCAG-- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AACU-- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pstub6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudotuberculosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudotuberculosis. ORGANISM Corynebacterium pseudotuberculosis. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84255|g671848 NCTC 3450 = ATCC 19410 = CIP 102968 (T) BASE COUNT 319 a 335 c 484 g 306 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-- 61 GCUCAG-GAC -GAAC-GC-- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUN-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --UUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ulcer3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium diphtheriae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium diphtheriae. ORGANISM Corynebacterium diphtheriae. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81912|g1061108 BASE COUNT 293 a 297 c 440 g 281 t 3065 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)G--GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAN-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ulcer2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium ulcerans. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium ulcerans. ORGANISM Corynebacterium ulcerans. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84256|g671857 NCTC 7910 (T) = ATCC 51799 = DSM 46325 = IMET 11148 = CCUG 2708 BASE COUNT 332 a 343 c 500 g 313 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-NU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUN-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA--CAG-- ---------- ---------- -----(---- --UUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A GUUG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CA-GG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG U......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ulcern 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium ulcerans. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium ulcerans. ORGANISM Corynebacterium ulcerans. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information REFERENCE 2 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Christen,R. and Monteil,H. TITLE Taxonomy of Corynebacterium diphtheriae and related taxa, with recognition of Corynebacterium ulcerans sp. nov. nom. rev. JOURNAL FEMS Microbiol. Lett. 126, 271-276 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81911|g735960 CCUG 2708 = ATCC 51799 = DSM 46325 = IMET 11148 = NCTC 7910 (T) BASE COUNT 314 a 326 c 458 g 295 t 2983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)G--GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCC 3121 A-UGG-C-CC -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.vitrum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium vitarumen. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium vitarumen. ORGANISM Corynebacterium vitarumen. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84680|g671858 NB: DSM 20294? instead of NCTC 20294 (T) BASE COUNT 316 a 334 c 483 g 299 t 2944 others ORIGIN 1 .......... .......... .......... .......... ..GAGU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---G -ACNU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----U GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CAGG--- -AU----CGG 1981 -CGU-A--(- GAGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| GCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(AUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGGCC-CC -AA-CCC--- ---------- ---------- -----(---- --GUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-UG-G.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.argent 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium argentoratense str. IBS B10697 CIP 104296 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium argentoratense str. IBS B10697 CIP 104296 (T). ORGANISM Corynebacterium argentoratense. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Bimet ,F., Christen,R. and Monteil,H. TITLE Corynebacterium argentoratense sp. nov., from the human throat JOURNAL Int. J. Syst. Bacteriol. 45, 533-537 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP 104296 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83955|g1000693 isolate_name= IBS B10697 BASE COUNT 297 a 294 c 437 g 283 t 3065 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AN -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCUA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UGA--UCU-G C-CCUC---A -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- UG-AU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----GGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-ACU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UA -CGCAA.).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.kutsch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium kutscheri. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium kutscheri. ORGANISM Corynebacterium kutscheri. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Journal of veterinary medical science JUN 01 1995 v 57 n 3 :515 STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37802|g520846 ATCC 15677 (T) = CIP 103423 = DSM 20755 = NCTC 11138 = IFO 15288 BASE COUNT 298 a 298 c 445 g 295 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUCU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GAGUA C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---UUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUN-- ---)------ ---------| --------C- G--GUU---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-NU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -CU--CU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCCCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---CAGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-UUUUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU A-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAA-G CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- AA-CGGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(AU --GCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.kutsc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium kutscheri. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium kutscheri. ORGANISM Corynebacterium kutscheri. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81871|g671842 CIP 103423 = DSM 20755 = NCTC 11138 = IFO 15288 = ATCC 15677 (T) BASE COUNT 317 a 315 c 464 g 314 t 2966 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUCU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AGAGA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---A -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---UUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -CC-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---CAGG--- -AU----CGG 1981 -NUU-A--(- GAGA-)-UAG -U-UUUUC-- ---------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU A-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- AA-GCGAA-U CGCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GAGNCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-G-CU -AA-CCAC-- ---------- ---------- -----(---- --GUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UUGAGG-G-A G-UG-GU-CG .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.kutsc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium kutscheri. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium kutscheri. ORGANISM Corynebacterium kutscheri. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82063|g1061096 CIP 103423 = DSM 20755 = NCTC 11138 = IFO 15288 = ATCC 15677 (T) BASE COUNT 298 a 293 c 444 g 290 t 3051 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUUCU-UG (--CU----- ---------- ---------- 241 --------UG -)CA-AGAGA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCU---A -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---UUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUU---- 661 ----AGGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A UUGAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -CC-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---CAGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-UUUUC-- ---------- ---CU----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NU A-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---NUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- AA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GAGCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(NC -AGCAAC)-G CUG-CGGUG. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.diphth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium diphtheriae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium diphtheriae. ORGANISM Corynebacterium diphtheriae. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84248|g671817 BASE COUNT 327 a 339 c 504 g 312 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAC -GGAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CAGG--- -AU----CGG 1981 -CGU-A--(- GUGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA---GCC 3121 AGUGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGG-G-A G-CU-GU-CG A-AGGU-GGN AUC-GG-CG- AUU-GGNA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGGC-UG G......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.dipht2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium diphtheriae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium diphtheriae. ORGANISM Corynebacterium diphtheriae. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82059|g1061061 CIP 100721 (T) = ATCC 27010 BASE COUNT 309 a 317 c 464 g 296 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUA---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUN-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-NC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CAGG--- -AU----CGG 1981 -CGU-A--(- GUGA-)-UAC -G-UUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAANG CGC-U-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA---CGC 3121 AGUGG-C-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renale 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. Charita-a ATCC 19412 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. Charita-a ATCC 19412 (T). ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria . JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19412 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29553 ATCC 19412 (T) = CIP 103421 = IFO 15290 = NCTC 7448 isolate_name= Charita-a BASE COUNT 290 a 302 c 455 g 298 t 3031 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UUGUGG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UNC|-UN--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCMGC CGCGGUM-A) U-M-Y-GUAG |-GGUG-N-- 1201 NAG-CGUUGU CC-GGAUUUM -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-YA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --SN-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-N--CA-AG CGGCGG-AGC N-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. Charita-a CIP 103421. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. Charita-a CIP 103421. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP 103421 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84249|g671853 CIP 103421 = IFO 15290 = NCTC 7448 = ATCC 19412 (T) isolate_name= Charita-a BASE COUNT 318 a 332 c 480 g 313 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-G--- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 --UGG-N-CC -AA-CCAG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-UG-GU-CG A-NGGU-GGA AUC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. Charita-a CIP 103421. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. Charita-a CIP 103421. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP 103421 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81909|g1061106 CIP 103421 = IFO 15290 = NCTC 7448 = ATCC 19412 (T) isolate_name= Charita-a BASE COUNT 308 a 322 c 461 g 301 t 2984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AC----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCC 3121 N-UGG-C... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale.. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37804|g520848 BASE COUNT 307 a 321 c 460 g 301 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------GG- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-CG- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAC)---A-U GG-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-CGUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UA -CGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CC. 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. HR56. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. HR56. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37803|g520847 isolate_name= HR56 BASE COUNT 282 a 290 c 435 g 282 t 3087 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-CG- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAC)---A-U GG-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-CGUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GA....... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. HR59. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. HR59. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37806|g520850 isolate_name= HR59 BASE COUNT 309 a 324 c 462 g 302 t 2979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------GG- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-U GG-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCN 3121 N-UGG-C-CC -AA....... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.renal4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium renale str. HR58. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium renale str. HR58. ORGANISM Corynebacterium renale. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37805|g520849 isolate_name= HR58 BASE COUNT 319 a 333 c 485 g 314 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--C--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------GG- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACA-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---C-U GG-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- AU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CCAG-- ---------- ---------- -----(---- --UUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C UGGGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AANGU. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.matru2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium matruchotii. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium matruchotii. ORGANISM Corynebacterium matruchotii. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84443 BASE COUNT 297 a 299 c 447 g 302 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... CCACUUU-UU (--UG----- ---------- ---------- 241 --------GU -)GG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- UC-AU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- -UUAUUGUU- ---)------ ---------| -----U--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GU-UA 1021 --GG-GAC-- GA-AG-C... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GGU- 1321 -GGCA-GGCG A-UAC-GGGC AUAACUA-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCNA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-UU-- -------A|G -GU-GU-GGG -GA-CC---- ---------- 1681 -(GGU-UU)- ---------- ---------- ---------- -------GGU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----GGU 1981 -UGU-A--(- GAGA-)-UAC -GUACCUC-- ---------- ---CC----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA -UGGU-U-AG -UA--CAACG CGC-U-G--- GA-ACC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CU-A-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CU -AA-CCAC-- ---------- ---------- -----(---- -CAUUU...- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.matruc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium matruchotii. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium matruchotii. ORGANISM Corynebacterium matruchotii. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82065|g1061098 CIP 81.82 (T) = ATCC 14266 BASE COUNT 289 a 286 c 451 g 293 t 3057 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCCCC-AC (--UUU---- ---------- ---------- 241 -------UUU -)GG-UGGGG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- UC-AU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- -UUAUUGUU- ---)------ ---------| -----N--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C... .......... 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GU-UA 1021 --GG-GAC-- GA-AG-C... .........( .....UGGGU GUG------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCUUU-GU U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GNGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-GCG|U CGU---CUGU G-AAA-UU-C CG-GNG-C(- UU-A)A-CUU -CG-G-GGU- 1321 -GGCA-GGCG A-UAC-GGGC AUAACUA-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-UU-- -------A|G -GU-GU-GGG -GA-CC---- ---------- 1681 -(GGU-UU)- ---------- ---------- ---------- -------GGU -UUCNG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C U)--CGAAGA 1921 A-CCUUA-CC UGG-GN-UUG ACA-UG|-C- ---------A ---CCAG--- -AC----GGU 1981 -CGU-A--(- GAGA-)-UAC -GUACCUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-U-AG -UA--CAAAG CGC-U-G-C- NA-ACC-U(G 2881 -UGA)GGGU- ---------- GA-GCGAA-U CGCUG-AAAG -CU-A-AUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.afrme3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium afermentans subsp. liphophilum CIP 103500 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium afermentans subsp. liphophilum CIP 103500 (T). ORGANISM Corynebacterium afermentans. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82055|g1061052 BASE COUNT 293 a 295 c 448 g 283 t 3057 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C------ ----AU-(-- --------UU 541 UG-------- -)-GAU---G GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-G- ---------( -----UAUU- ---------) ---------U 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GC-N NN-CAG-C(- UU-A)A-CUG -CG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-CUG-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.afrme2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium afermentans subsp. afermentans CIP 103499 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium afermentans subsp. afermentans CIP 103499 (T). ORGANISM Corynebacterium afermentans. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82054|g1061051 BASE COUNT 293 a 294 c 449 g 285 t 3055 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C------ ----AU-(-- --------UU 541 UG-------- -)-GAU---G GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-G- ---------( -----UAUU- ---------) ---------U 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GC-N NN-CAG-C(- UU-A)A-CUG -CG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -CGU-A--(- GAGA-)-UAC -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-UUG-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.afrmen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium afermentans str. DMMZ 545 (DMMZ 525?). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium afermentans str. DMMZ 545 (DMMZ 525?). ORGANISM Corynebacterium afermentans. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81874|g671810 isolate_name= DMMZ 545 (DMMZ 525?) BASE COUNT 289 a 304 c 454 g 288 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--A--- ---UUU-(-- --------UG 541 GA-------- -)-UGG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-CU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUAUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GC-C CG-CAG-C(- UU-A)A-CUG -CG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CN-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCCA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----NGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUNC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUUU-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GU-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GU-- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.coylei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium coyleiae. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium coyleiae. ORGANISM Corynebacterium coyleiae. REFERENCE 1 AUTHORS Funke,G., Ramos,C.P. and Collins,M.D. TITLE Corynebacterium coyleae sp. nov., isolated from human clinical specimens JOURNAL Int. J. Syst. Bacteriol. 47 (1), 92-96 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X96497|g1934843 DMMZ 214 = DSM 44184 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 326 a 346 c 496 g 308 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUNCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCUC-NG (--CU----- ---------- ---------- 241 --------UG -)CA-NGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCCN---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-C--U--- ---UCU-(-- --------UG 541 GA-------- -)-GGU---- -U-GU----G GU-GGAAA-- ---GU----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-NCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GC-C CG-CAG-C(- UU-A)A-CUG -CG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGN 1981 -CGN-A--(- GAGA-)-UGC -G-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUUU-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GU-GCUAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -GU-CAU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... ....GG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)-- UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.psgeni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudogenitalium. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudogenitalium. ORGANISM Corynebacterium pseudogenitalium. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81872|g728538 BASE COUNT 319 a 317 c 482 g 311 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AA-C--U--- ---UUU-(-- --------UG 541 GA-------- -)-UAU---- -U-GU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---GCGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCG-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG CGUUU-G-C- UA-CCU-U(G 2881 -UGA)GGGG- ---------- AU-GCUAA-U CGCAC-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUN- CCC....... .......... 3061 .......... .......... .......... .......... .......... ...A-G-CCA 3121 G-UGG-C-CU ---------- ---------- ---------- -----(---- -GUCAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.G4330 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium sp. str. taxon 1 CDC G4330. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium sp. str. taxon 1 CDC G4330. ORGANISM Corynebacterium sp. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: CDC G4330 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81905|g1061050 isolate_name= taxon 1 BASE COUNT 314 a 318 c 460 g 303 t 2981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AA-C--U--- ---UUU-(-- --------UG 541 GA-------- -)-UAU---- -U-GU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----NNNNNN ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CCN--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---CGGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UCG-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG CGUUU-G-C- UA-CCU-U(G 2881 -UGA)GGGG- ---------- AU-GCUAA-U CGCAC-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CU -GU-CAU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.G5911 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium sp. str. taxon 2 CDC G5911. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium sp. str. taxon 2 CDC G5911. ORGANISM Corynebacterium sp. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: CDC G5911 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81904|g1061049 isolate_name= taxon 2 BASE COUNT 312 a 319 c 463 g 305 t 2977 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AA-C--U--- ---UUU-(-- --------UG 541 GA-------- -)-UAU---- -U-GU----U GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----AUUAU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CCN--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-U- ---------A ---CNGG--- -AU----CGC 1981 -CGC-A--(- GAGA-)-UGU -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UCG-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG CGUUU-G-C- UA-CCU-U(G 2881 -UGA)GGGG- ---------- AU-GCUAA-U CGCAC-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CU -GU-CAU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.gental 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "genitalium". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "genitalium". ORGANISM Corynebacterium "genitalium". REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84253|g671834 BASE COUNT 305 a 322 c 464 g 297 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-- 61 GCUCAG-GAU -GAAC-GC-- UGCC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-AG 481 AU-AGG---- ---------- -------A-C CA-C------ ----GU-(-- --------CU 541 UG-------- -)-GAU---G GU-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUCA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-UA-C CG-CAG-C(- UU-A)A-CUG -CG-G-GGU- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- UA-CUU-C(G 2881 -UGA)GGAG- ---------- GC-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGN-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --NNA-UGGA G--UU-GUU- ---GC-ACCA -GAA-G-UAG 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.mycetd 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium mycetoides. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium mycetoides. ORGANISM Corynebacterium mycetoides. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84241|g671844 BASE COUNT 326 a 334 c 502 g 314 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-CG 481 AU-AGG---- ---------- -------A-G CU-G--C--- ---AUG-(-- --------UU 541 GG-------- -)-UGU---- -G-UG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-G-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-CGG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUAG--- -AU----CGC 1981 -UGU-A--(- GAGA-)-UAC -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AU-C----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.mycet2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium mycetoides. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium mycetoides. ORGANISM Corynebacterium mycetoides. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82066|g1061099 CIP 55.51 (T) = ATCC 21134 BASE COUNT 308 a 316 c 470 g 300 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CU-G--C--- ---AUG-(-- --------UU 541 GG-------- -)-UGU---- -G-UG----G UU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-G-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC C(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-CGG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UUCCCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUAG--- -AU----CGC 1981 -UGU-A--(- GAGA-)-UAC -G-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGUGU-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GG-GCUAA-U CGCUG-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.auris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium auris. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium auris. ORGANISM Corynebacterium auris. REFERENCE 1 AUTHORS Funke,G., Lawson,P.A. and Collins,M.D. TITLE Heterogeneity within human-derived Centers for Disease Control and prevention (CDC) Coryneform Group ANF-1-like bacteria and description of Corynebacterium auris sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 735-739 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82493|g790426 (bases 45 to 1329) Former RDP Sids: Cor.spRets DSM 44122 (T) = DMMZ 328 = CCUG 33426 NB: former name Corynebacterium sp. BASE COUNT 272 a 283 c 438 g 280 t 3103 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)CG-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-C UG-C--U--- ---GGU-(-- --------UG 541 GU-------- -)-GCU---- -G-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGCU CUCGUAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-UAA-GU-C CA-UGG-C(- UU-A)A-CUG -UG-G-GAC- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAU- C-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -CC-UC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -GUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-CGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|-C- ---------A ---CUGG--- -AU----CGG 1981 -GCC-A--(- GAGA-)-UGG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-NU-G |-UC--UUA- 2281 UG--UUNC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UC-AGC--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG-NNNACA AUGGU-C-GG -UA--CAGNG CGUNU-G-N- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCUAN-U CGCUAGAAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.seminl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium seminale. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium seminale. ORGANISM Corynebacterium seminale. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., de Briel,D., Prevost,G., Jehl,F., Bimet ,F., Christen,R. and Monteil,H. TITLE Corynebacterium seminale sp. nov., a new species associated with genital infections in male patients JOURNAL J. Clin. Microbiol. 33, 2244-2249 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84375|g975652 BASE COUNT 278 a 284 c 457 g 295 t 3062 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AN -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UGA--UCU-G C-CCUG---C -ACUG-G-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-CU 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---UCG-(-- --------UG 541 GU-------- -)-UGG---- -U-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- --UUUNN--- ---)------ ---------| -----C--U- G--GUG---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-G-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GU-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GU-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ----UUNUN- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-GU- 1261 G-UC-GCG|U CGU---CUGU G-UAA-UC-C AG-GGG-C(- UU-A)A-CUU -UU-G-GUU- 1321 -GGCA-GGCG A-UAC-GGGC AUUGCUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -GUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---UGAG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-UCGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUC-NU-UNA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGUG CGU-GUG-C- GA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CGCNG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.glucur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium glucuronolyticum str. GF 838 DSM 44120. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium glucuronolyticum str. GF 838 DSM 44120. ORGANISM Corynebacterium glucuronolyticum. REFERENCE 1 AUTHORS Miah,A., Hutson,R.A. and Collins,M.D. TITLE Ribosomal 16S sequence of Corynebacterium glucuronolyticum, recovered from males with genito-urinary infections JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 44120 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86688|g794031 isolate_name= GF 838 BASE COUNT 319 a 330 c 501 g 332 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UGA--UCU-C C-CCUC---C -ACUG-G-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-CU 481 AU-AGG---- ---------- -------A-C CC-C--A--- ---UCG-(-- --------UG 541 GU-------- -)-UGG---- -U-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----C--U- G--GUG---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AA-C-CG| -C-CCU--(G -AGA)-GGGU ----GU-G-- CGN-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UACA|-CCGA CACC-GU-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GU-CA 1021 --GG-GAC-- GA-AG-U--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-GU- 1261 G-UC-GCG|U CGU---CUGU G-UAA-UC-C AG-GGG-C(- UU-A)A-CUU -UU-G-GUU- 1321 -GGCA-GGCG A-UAC-GGGC AUUGCUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----UAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -UC-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CU- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---UGAG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-UCGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUC-AU-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-U-GG -UA--CAGUG CGU-GUG-C- GA-CAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CGC-G-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAGU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCC 3121 A-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- GGUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-A G-UG-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tur.otitid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Turicella otitidis str. 234/92 DSM 8821 (T). ACCESSION No information KEYWORDS No information. SOURCE Turicella otitidis str. 234/92 DSM 8821 (T). ORGANISM Turicella otitidis. REFERENCE 1 AUTHORS Funke,G., Stubbs,S., Altwegg,M., Carlotti,A. and Collins,M.D . TITLE Turicella otitidis gen. nov., sp. nov., a coryneform bacterium isolated from patients with otitis media JOURNAL Int. J. Syst. Bacteriol. 44, 270-273 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 8821 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73976|g437758 (bases 1 to 1461) Former RDP Sids: Cor.otitid isolate_name= 234/92 NB: former name Corynebacterium otitidis BASE COUNT 303 a 326 c 506 g 320 t 2921 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGNC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------C CUACUUU-CC (--CUU---- ---------- ---------- 241 --------GU -)GG-AUUGC GGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UGA--UCU-G C-CCCC---A -ACUU-G-GG 421 -NAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUUCC-CG 481 AU-AGG---- ---------- -------A-C UG-C--A-G- ---GG--(-- --------UG 541 GU-------- -)-GCC---- -U-GU----G GU-GGAAA-- ---ACGA--- ---------- 601 --(------- ---UUUUC-- ---)------ ---------| ---UAG--U- G--GUU---- 661 ----GGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CC 1021 --GC-GAG-- GA-AG-C--- ----CGCCU( ---GGUUGGA A--------) GGGUG----- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GC-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-GU-C UG-GGG-C(- UU-A)A-CUC -CG-G-GUG- 1321 -UGCA-GGCG A-UAC-GGGC U-GGCUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-CA CUGACG-CUG AG-G------ -------AG- C-GAGA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -GA-CUU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -U-------- -------GGU -UUCCG-UGU 1741 CC--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GNC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-C- ---------A ---CUAG--- -AU----UAG 1981 -GCG-A--(- GAGA-)-UCG -U-CUGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-G AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGUA GGU-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCUGU-AAAG -CU-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -ACCAUU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 N-UUG-C-UC -CA-C----- ---------- ---------- -----(---- UUAGUNU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --G-GG-G-U G-GU-NU-CG A-AGGU-GGG AUC-GG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.cysttd 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium cystitidis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium cystitidis. ORGANISM Corynebacterium cystitidis. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37914|g529367 ATCC 29593 = CIP 103424 (T) NB: GB entry has org name as Cirtbebacteruyn ctstutudis BASE COUNT 310 a 307 c 488 g 328 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A CG-U--A-U- ---CUU-(-- --------UU 541 GU-------- -)-GGG---- -U-GU---GG UG--GAAA-- ---GGU---- ---------- 601 --(------- --UUUGU--- ---)------ ---------| ----GC--U- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUGU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-C UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AU-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AU----UGC 1981 -CAU-G--(- GAGA-)-CAN -U-NUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAN---- ---------- ---------- ---N(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG --U-G-G-C- NA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CGUGU-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-U-G- UA-AC-ACCC -GAA-C-GCA 3121 G-UCGGC--U -AU-C----- ---------- ---------- -----(---- -UUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.cystt2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium cystitidis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium cystitidis. ORGANISM Corynebacterium cystitidis. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84252|g671815 BASE COUNT 326 a 318 c 507 g 337 t 2888 others ORIGIN 1 .......... .......... .......... .......... .GAGAU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUACA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A CG-U--N-U- ---CUU-(-- --------UN 541 GU-------- -)-GGG---- -U-GU----G UG--GAAA-- ---GGU---- ---------- 601 --(------- --UUUGU--- ---)------ ---------| ----GC--U- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GU-GU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AU-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AU----UGC 1981 -CAU-G--(- GAGA-)-CAU -G-GUUUC-- ---------- ---CC----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG CGU-G-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CGUGU-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAUU)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGGCC--U -AU-C----- ---------- ---------- -----(---- -UUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.cystt3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium cystitidis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium cystitidis. ORGANISM Corynebacterium cystitidis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82058|g1061060 CIP 103424 (T) = ATCC 29593 BASE COUNT 287 a 276 c 453 g 302 t 3058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AN -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CUCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- UGC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A CG-U--A-U- ---CUU-(-- --------UU 541 GU-------- -)-GGG---- -U-GU----G UG--GAAA-- ---GGU---- ---------- 601 --(------- --UUUGU--- ---)------ ---------| ----GC--U- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- UGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GU-GU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-GA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AU-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -UUUUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AU----UGC 1981 -CAU-G--(- GAGA-)-CAU -G-GUUUC-- ---------- ---CC----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGCG CGU-G-G-C- GA-UAU-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CGUGU-AAAG -CC-G-GUC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCANU)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ammoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium ammoniagenes. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium ammoniagenes. ORGANISM Corynebacterium ammoniagenes. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82056|g1061053 CIP 101283 (T) = ATCC 6871 BASE COUNT 298 a 287 c 439 g 284 t 3068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCUG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CAGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUA-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-AU 481 AU-AGG---- ---------- -------A-C CA-C--U--- ---UCU-(-- --------UG 541 GA-------- -)-UGUU--- -G-UG----G -U-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 .......... .......... .........( .....GGUG- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-UCGUC-- ---------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GA -UA--CAAUG GGC-A-G-C- GA-CAU-C(G 2881 -UGA)GGUG- ---------- NA-GCGAA-U CCCUG-AAAG -UC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.ammon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium ammoniagenes. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium ammoniagenes. ORGANISM Corynebacterium ammoniagenes. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84440 CIP 101283 (T) = ATCC 6871 BASE COUNT 342 a 338 c 500 g 321 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CCUG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CAGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUA-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-AU 481 AU-AGG---- ---------- -------A-C CA-C--U--- --UC---(-- --------UU 541 GG-------- -)-AUGU--- -U-GU----G GU-GGAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AU-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-A|C-AC -AUUGG-G-A 841 (CUGA-GA-N ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --UC-GAC-- GA-AG-C-CA C--------( ----CUUGG- ---------) -------GUG 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUA( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-GGG-C(- UU-A)A-CUU -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAGG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-UCGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-A A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GA -UA--CAAUG GGC-A-G-C- GA-CAU-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUG-AAAG -UC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-CCCU -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG G......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.flave2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium flavescens. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium flavescens. ORGANISM Corynebacterium flavescens. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84441|g1067115 BASE COUNT 334 a 330 c 496 g 329 t 2887 others ORIGIN 1 .......... .......... .......... ...AUCGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-AC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CG-G--U--- ---CUU-(-- --------UG 541 GU-------- -)-GUG---- -A-UU----G UU-GGAAA-- ---GA----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-CU U--------( -----UUUU- ---------) -------AAG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-A-G -GG-GGC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CAGG--- -AU----UGG 1981 -GUC-A--(- GAGA-)-UGG -C-UUGUC-- ---------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAAUG CGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGUGU-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.flaves 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium flavescens. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium flavescens. ORGANISM Corynebacterium flavescens. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82060|g1061090 CIP 69.5 (T) = ATCC 10340 BASE COUNT 313 a 315 c 466 g 308 t 2974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCCCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-NAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-A CG-G--U--- ---CUU-(-- --------UG 541 GU-------- -)-GUG---- -A-UU----G UU-GGAAA-- ---GA----- ---------- 601 --(------- --UUUUU--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UGGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-CU U--------( -----UNNN- ---------) -------AAG 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-A-G -GG-GGC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------G ---CAGG--- -AU----UGG 1981 -GUC-A--(- GAGA-)-UGG -C-UUGUC-- ---------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAAUG CGU-U-G-C- GA-UAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGUGU-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CU......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pilos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pilosum str. 46 Hara NCTC 11862 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pilosum str. 46 Hara NCTC 11862 (T). ORGANISM Corynebacterium pilosum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11862 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84246|g671849 NCTC 11862 (T) = ATCC 29592 isolate_name= 46 Hara BASE COUNT 325 a 321 c 482 g 309 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AC-AUNCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--NU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UUA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A AC-------- -------(-- --------UU 541 GU-------- -)-------- ----G----U UG--GAAA-- ---GCC---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| ----GG--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GNAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-ACU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-U-GG -UA--CAGCG CGC-A-G-C- GA-GAU-C(G 2881 -UGA)GGUU- ---------- GA-GCUAA-U CGCAC-AAAG -CC-A-GCC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pilosm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pilosum str. 46 Hara ATCC 29592. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pilosum str. 46 Hara ATCC 29592. ORGANISM Corynebacterium pilosum. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29592 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37915|g529368 ATCC 29592 = NCTC 11862 (T) isolate_name= 46 Hara BASE COUNT 289 a 292 c 434 g 286 t 3075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G........ .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..C|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UUA--UCU-G C-CCUC---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A AC-------- -------(-- --------UU 541 UG-U------ -)-------- ----G----U UG--GAAA-- ---GCC---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| ----GG--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- NU-GGG-UA- 1561 GC-CAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CCUGU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -AN-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-U-GG -UA--CAGCG C---A-G-C- GA-GAU-C(G 2881 -UGA)GGUU- ---------- GA-CGUAA-U CGCAC-AAAG -CC-A-GCC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(NN -NGCAUU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.pilos3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pilosum str. 46 Hara ATCC 29592. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pilosum str. 46 Hara ATCC 29592. ORGANISM Corynebacterium pilosum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29592 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81908|g1061101 ATCC 29592 = NCTC 11862 (T) isolate_name= 46 Hara BASE COUNT 310 a 312 c 460 g 297 t 2997 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------G UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-A AC-------- -------(-- --------UU 541 UG-U------ -)-------- ----G----U UG--GAAA-- ---GCC---- ---------- 601 --(------- ---UUUG--- ---)------ ---------| ----GG--C- G--GUA---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-GAA-GU-C CG-GGG-C(- UU-A)A-CUU -CG-G-GAG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-ACU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GUU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-U-GG -UA--CAGCG CGC-A-G-C- GA-GAU-C(G 2881 -UGA)GGUU- ---------- GA-GCUAA-U CGCAC-AAAG -CC-A-GCC- GUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.striat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium striatum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium striatum. ORGANISM Corynebacterium striatum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81910|g1061107 CIP 81.15 (T) = ATCC 6940 BASE COUNT 300 a 296 c 445 g 281 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AG-C--U--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -A-GU----U GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCCUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.stria2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium striatum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium striatum. ORGANISM Corynebacterium striatum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84442|g1067119 BASE COUNT 337 a 339 c 490 g 310 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUNCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-AG 481 AU-AGG---- ---------- -------A-C CA-C--U--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -A-GU----U GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -A-A-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCCUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-UC -AA-A----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.xeros3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium xerosis. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium xerosis. ORGANISM Corynebacterium xerosis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81906|g1061110 IAM 12431 = ATCC 7711 BASE COUNT 298 a 296 c 444 g 284 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCUGC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GCGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C AG-C--U--- ---GUU-(-- --------UA 541 GU-------- -)-GUC---- -A-GU----U GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-U- ---------A ---CAAG--- -AC----AGG 1981 -CGU-A--(- GAGA-)-UAC -G-UCCUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.minsim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ORGANISM Corynebacterium minutissimum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10288 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84678|g671845 NCTC 10288 (T) = ATCC 23348 isolate_name= clone 1 isolate_name= clone 2 BASE COUNT 317 a 325 c 475 g 315 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-A CC-G--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-NGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C N)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CNC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-UC -AA-A----- ---------- ---------- -----(---- -CUUGGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CU A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCC.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.minsi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ORGANISM Corynebacterium minutissimum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10288 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84679|g671846 NCTC 10288 (T) = ATCC 23348 isolate_name= clone 1 isolate_name= clone 2 BASE COUNT 318 a 326 c 477 g 311 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-A CC-G--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGG-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-NGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C N)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CNC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-UC -AA-A----- ---------- ---------- -----(---- -CUUGGU--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CU-GU-CU A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCC.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.minsi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium minutissimum str. clone 1 NCTC 10288 (T). ORGANISM Corynebacterium minutissimum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10288 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82064|g1061097 NCTC 10288 (T) = ATCC 23348 isolate_name= clone 1 isolate_name= clone 2 BASE COUNT 311 a 315 c 462 g 298 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CCNNN-NG (--CU----- ---------- ---------- 241 --------UG -)CN-NNGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-A CC-G--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUN-- ---)------ ---------| --------C- G--GUG---- 661 ----CAAG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GU- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GNNA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-GC---- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GUC -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCA 3121 G-UGG-C-UN -NA-A----- ---------- ---------- -----(---- -CU......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.macgin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium macginleyi str. JCL-2 CIP 104099 (T). ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium macginleyi str. JCL-2 CIP 104099 (T). ORGANISM Corynebacterium macginleyi. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Christen,R. and Monteil,H. TITLE Genomic diversity and phylogenetic relationships among lipid-requiring diphteroids from humans and characterization of Corynebacterium macginleyi sp. nov JOURNAL Int. J. Syst. Bacteriol. 45, 128-133 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP 104099 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80499|g665619 biol_source= eye of patient with corneal ulcer isolate_name= JCL-2 BASE COUNT 307 a 311 c 464 g 309 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CG-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----UUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UUU--- ---------- 1681 -(UUC-UA)- ---------- ---------- -C-------- -------GAU -UCUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CGAG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCG 3121 G-UGG-C-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.accoln 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium accolens. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium accolens. ORGANISM Corynebacterium accolens. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Christen,R. and Monteil,H. TITLE Genomic diversity and phylogenetic relationships among lipid-requiring diphteroids from humans and characterization of Corynebacterium macginleyi sp. nov JOURNAL Int. J. Syst. Bacteriol. 45, 128-133 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80500|g665608 CCUG 28779 (T) = ATCC 4972 BASE COUNT 309 a 315 c 461 g 306 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-A CC-A--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(UUC-UA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCG 3121 G-UGG-C-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.fastid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "fastidiosum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "fastidiosum". ORGANISM Corynebacterium "fastidiosum". REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84245|g671832 BASE COUNT 331 a 335 c 497 g 325 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-- 61 GCUCAG-GAC -GNAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-A CC-A--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUUU ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(UUC-UA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUAG--- -AU----UGN 1981 -UCU-A--(- GAGA-)-UAG -A-UCGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CGUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CG-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UACCG-GUAC C(GGA-A)GG UGCGN---UG --U-ACCC.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.segmnt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "segmentosum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "segmentosum". ORGANISM Corynebacterium "segmentosum". REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84437|g1066269 BASE COUNT 329 a 334 c 501 g 320 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CC-A--U--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -G-UG----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C-U- ---------( -----UUGU- ---------) ---------G 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C UG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUG-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GAG -GG-UCU--- ---------- 1681 -(UUC-UA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-UCGUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-U-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-A----- ---------- ---------- -----(---- -CGUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(GGA-A)GG UGGG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.tuberc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium "tuberculostearicum". ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium "tuberculostearicum". ORGANISM Corynebacterium "tuberculostearicum". REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84247|g671855 BASE COUNT 328 a 338 c 494 g 317 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ...AC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CC-A--U-UU ---UUA-(-- --------GU 541 GU-------- -)-GAU---- ---G-----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGGAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GUGAGG -GU-CUU--- ---------- 1681 -(-UU-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-NCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGG 1981 -GCU-A--(- GAGA-)-UAG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-A----- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCAC.... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.spG-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium sp. ORGANISM Corynebacterium sp. REFERENCE 1 AUTHORS Riegel,P., Ruimy,R., De Briel,D., Prevost,G., Jehl,F., Christen,R. and Monteil,H. TITLE Genomic diversity and phylogenetic relationships among lipid-requiring diphteroids from humans and characterization of Corynebacterium macginleyi sp. nov JOURNAL Int. J. Syst. Bacteriol. 45, 128-133 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80498|g665618 legacy_attribute= biovar:group G-2 BASE COUNT 309 a 318 c 462 g 302 t 2985 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-G CC-A--U-UU ---UUA-(-- --------GU 541 GU-------- -)-GAU---- ---G-----G UU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-UA 1021 --GG-GAC-- GA-AG-C--- ---------( ----UUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-GA U-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CUC -CG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC AUAACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GUGAGG -GU-CUU--- ---------- 1681 -(-UU-CA)- ---------- ---------- -C-------- -------GAC -UUUCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----UGG 1981 -GCU-A--(- GAGA-)-UAG -U-CUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAACG CGC-A-G-C- GA-CAC-U(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CGCUG-AAAG -CC-G-GCC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCG 3121 G-UGG-C-C. .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.propn2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium propinquum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium propinquum. ORGANISM Corynebacterium propinquum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84438|g1067118 BASE COUNT 318 a 329 c 483 g 312 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 -CUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UU (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-CCU--- ---------- 1681 -(-UU-UG)- ---------- ---------- -G-------- -------GGU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG CGC-A-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUU-AAAG -CC-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UC -AA-ACU--- ---------- ---------- -----(---- -CGGUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.propnq 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium propinquum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium propinquum. ORGANISM Corynebacterium propinquum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81917|g1061102 BASE COUNT 312 a 317 c 462 g 302 t 2983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UU (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C NG-C--A--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GG-CCU--- ---------- 1681 -(-UU-UG)- ---------- ---------- -G-------- -------GGU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CCAG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG CGC-A-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUU-AAAG -CU-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCG 3121 G-UGG-C-UC -AA-ACU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.psdph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudodiphtheriticum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudodiphtheriticum. ORGANISM Corynebacterium pseudodiphtheriticum. REFERENCE 1 AUTHORS Pascual,C., Lawson,P.A., Farrow,J.A.E., Gimenez,M.N. and Collins,M.D. TITLE Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 724-728 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84258|g671847 Former RDP Sids: Cor.psdip2 NCTC 11136 (T) = IFO 15362 = CCUG 27539 = DSM 44287 = ATCC 10700 = CIP 103420 (T) BASE COUNT 331 a 336 c 498 g 318 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GA-CCU--- ---------- 1681 -(-UU-UG)- ---------- ---------- -G-------- -------GGU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUA-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG CGC-A-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUU-AAAG -CU-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UC -AA-ACU--- ---------- ---------- -----(---- -CGUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --UAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.psdpht 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium pseudodiphtheriticum. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium pseudodiphtheriticum. ORGANISM Corynebacterium pseudodiphtheriticum. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81918|g1061103 CIP 103420 (T) = NCTC 11136 (T) = IFO 15362 = CCUG 27539 = DSM 44287 = ATCC 10700 BASE COUNT 313 a 317 c 461 g 302 t 2983 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-UC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CA-U--G--- ---CUU-(-- --------UA 541 GU-------- -)-GUG---- -U-GU----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUUU-- ---)------ ---------| --------C- G--GUG---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GG- CGA------- -----CG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUCC| UUUC-GC-CA 1021 --GG-GAC-- GA-AG-C--- ---------( ----GUUUU- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-GA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GU -G|-GU-UU- 1261 G-UC-ACG|U CGU---CUGU G-AAA-UU-C CA-CAG-C(- UU-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC -UGACUU-GA GUA-----CU G-UA-GGGGU AAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGA- 1441 -U-G-GC(-G AA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-UA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-AGG -GA-CCU--- ---------- 1681 -(-UN-UG)- ---------- ---------- -G-------- -------GGU -UUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UA|-C- ---------A ---CUGG--- -AU----CGC 1981 -UGC-A--(- GAGA-)-UGU -A-GUUUC-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GG-------- ---------| CUA-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UGA-GA-G A-CU-G-CCG --GG(-GU-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAAUG CGC-A-G-C- GA-GCC-U(G 2881 -UGA)GGGU- ---------- GA-GCUAA-U CGCUU-AAAG -CU-G-GUC- UUAGUUCGGA 2941 U-UGGGGUC- (UGCAAC-U- C)-GACCCCA -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-UGG- UA-AC-ACCC -GAA-C-GCG 3121 G-UGG-C-UC -AA-ACU... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.F.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.15.3 RHODOCOCCUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.15.3 RHODOCOCCUS_ASSEMBLAGE. ORGANISM 2.16.1.15.3 RHODOCOCCUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.zopfii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus zopfii. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus zopfii. ORGANISM Rhodococcus zopfii. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81934|g1061232 BASE COUNT 296 a 316 c 448 g 257 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-A--G-G- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UU-UU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Myb.lepra6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycobacterium leprae.. ACCESSION No information KEYWORDS No information. SOURCE Mycobacterium leprae. ORGANISM Mycobacterium leprae. REFERENCE 1 AUTHORS Estrada-G,I.C.E., Lamb,F.I., Colston,M.J. and Cox,R.A. TITLE Partial nucleotide sequence of 16S ribosomal RNA isolated from armadillo-grown Mycobacterium leprae JOURNAL J. Gen. Microbiol. 134, 1449-1453 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M20905 biol_source= skin nodules of the nine-banded armadillo BASE COUNT 75 a 84 c 95 g 55 t 4067 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......A-C GUG--CUACA AUG-C-C-GG -UA--CAAAG GGC-U-N-C- GACUGC-C(G 2881 -CAA)GGUAC ---------- AA-GCGGA-- CCCUAAAAAG -CC-G-G-C- UCAGAUUGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-- CUG-CGGUG- AAU-C-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGG-C-CN -NA-CC---- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CC A-AGGU-GGG AUN-GG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAG G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.ruber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus ruber. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus ruber. ORGANISM Rhodococcus ruber. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80625|g640002 BASE COUNT 324 a 374 c 508 g 275 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C CU-C--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUU---- CC-GG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----C--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-UA 1021 --CC-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGU-A-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AC----CGC 1981 -CCC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.coprp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus coprophilus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus coprophilus. ORGANISM Rhodococcus coprophilus. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81928|g1061222 BASE COUNT 296 a 313 c 448 g 262 t 3057 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-U -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.coprph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus coprophilus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus coprophilus. ORGANISM Rhodococcus coprophilus. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80626|g671617 BASE COUNT 330 a 359 c 503 g 289 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-U -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- CGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--G-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- CU-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CUGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---GUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GGG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus roseus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus roseus. ORGANISM Rhodococcus roseus. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81921|g1061229 ATCC 271 = DSM 43274 (T) BASE COUNT 288 a 319 c 451 g 252 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--N-N- ---GNU-(-- --------GC 541 AU-------- -)-GNC---N NN-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUC-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.roseus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus roseus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus roseus. ORGANISM Rhodococcus roseus. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80624|g640001 DSM 43274 (T) = ATCC 271 BASE COUNT 322 a 363 c 506 g 280 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--G-U- ---GCU-(-- --------GC 541 AU-------- -)-GUC---- GA-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AC-CC 1021 --AU-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GUG-G-GA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUC-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodochrous str. 372 CIP 1759.88 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodochrous str. 372 CIP 1759.88 (T). ORGANISM Rhodococcus rhodochrous. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP 1759 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81936|g1061231 CIP 1759.88 (T) = ATCC 13808 = NRRL B-16536 = ICPB 4420 = DSM 43241 (T) isolate_name= 372 BASE COUNT 290 a 319 c 454 g 254 t 3059 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--U-U- ---GCU-(-- --------GC 541 AU-------- -)-GGC---U GA-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUC-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodochrous str. 372 DSM 43241 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodochrous str. 372 DSM 43241 (T). ORGANISM Rhodococcus rhodochrous. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information REFERENCE 2 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43241 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79288|g640003 DSM 43241 (T) = ATCC 13808 = CIP 1759.88 (T) = NRRL B-16536 = ICPB 4420 isolate_name= 372 BASE COUNT 323 a 364 c 506 g 281 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--U-U- ---GCU-(-- --------GC 541 AU-------- -)-GGU---- GA-GG----G GU-GGAAA-- ---G------ ---------- 601 --(------- --UUUUU--- ---)------ ---------| --------C- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUC-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CCGG--- -AC----GAC 1981 -UGC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| CCG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodoc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodochrous.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodochrous. ORGANISM Rhodococcus rhodochrous. REFERENCE 1 AUTHORS Karlson,U., Dwyer,D.F., Hooper,S.H., Moore,E.R.B., Timmis,K .N. and Eltis,L.D. TITLE Two independently regulated cytochromes P-450 in a Rhodococcus rhodochrous strain that degrades 2-ethoxyphenol and 4-methoxybenzoate JOURNAL J. Bacteriol. 175, 1467-1474 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70295 BASE COUNT 255 a 266 c 357 g 226 t 3272 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... AGAC-AUGCA A-GUC-GAAC 121 G--AU-GA-A -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-AG (--CU----- ---------- ---------- 241 --------UG -)CU-GGS-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UGG|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGKG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UK-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--U-K- ---GAU-(-- --------GC 541 AU-------- -)-GGG---S WG-GG----G UG-GCAAA-- ---RW----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUN---- 661 ----CARG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGAC ----GA-C-- CSS-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... ......A-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGY|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CRK---CUGU G-AAA-UC-C CG-CAG-C(- UC-A)A-CUG -CG-G-GAU- 1321 -UGCA-GGCG A-UAC-KGRM A-GACUC-GA GUM-----CU S-YA-GRGGA GAC-U|GGAA 1381 UU-CCUGAU- GUA-GCG(-G UGAAA)-UGC -YU-AGAU-A UC-AGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCRG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA YUGACR-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(CAA- ---C)G-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UG|-U- ---------A ---CUGG--- -AC----GAC 1981 -UAC-A--(- GAGA-)-UGU -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GA-------- ---------| CCG-GU-AGA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-N |-UC--CUG- 2281 UG--UURC-C AA-CAC---- ---------- ---------- ---G(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-CAG-GA-G A-CU-G-CCG --GG(-GY-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CR--GGGC- 2821 W-UCA-CA-C AUG--CUACA AUGGU-C-GG -UA--CACAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUY-AAAG -CC-G-NUC- UCAGUUCGGN 2941 N-NRUCGGG- (GUCAAC-U- C)-GACCCCG -UGAARU-CG -GANU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCMAN)-G CUG-CGGUG- AAUAC-GUU- CCC-GG.... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodn4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodnii. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodnii. ORGANISM Rhodococcus rhodnii. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81935|g1061230 BASE COUNT 301 a 332 c 464 g 269 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-CU (--UU----- ---------- ---------- 241 --------C- -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-GNG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-C... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodn2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodnii str. N 443 DSM 43337. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodnii str. N 443 DSM 43337. ORGANISM Rhodococcus rhodnii. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80622|g671628 isolate_name= N 443 BASE COUNT 327 a 360 c 505 g 285 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AACG-NCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodnii str. N 445 DSM 43336 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodnii str. N 445 DSM 43336 (T). ORGANISM Rhodococcus rhodnii. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43336 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80621|g671627 DSM 43336 (T) = NCIMB 11279 isolate_name= N 445 BASE COUNT 324 a 362 c 505 g 285 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.rhodn3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus rhodnii str. N 444 DSM 43959. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus rhodnii str. N 444 DSM 43959. ORGANISM Rhodococcus rhodnii. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43959 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80623|g671629 DSM 43959 = IMET 7464 isolate_name= N 444 BASE COUNT 326 a 361 c 510 g 285 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCC-UU (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACU-GG 481 AU-AUG---- ---------- -------A-C CA-C--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GGC---C UG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GG-UA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-A-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-UC-C CA-CAG-C(- UC-A)A-CUG -UG-G-GCG- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AU----CGC 1981 -CUC-A--(- GAGA-)-UGG -G-GUUU--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CC -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGG.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.corbac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia corynebacteroides. ACCESSION No information KEYWORDS No information. SOURCE Nocardia corynebacteroides. ORGANISM Nocardia corynebacteroides. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80615|g671573 DSM 20151 (T) = NCTC 10391 = NCIMB 9433 = ATCC 14898 BASE COUNT 328 a 369 c 503 g 276 t 2900 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------CG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-C UG-C--G-C- ---GGU-(-- --------GC 541 AU-------- -)-GCC---- GU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -UU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-N--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.1.F.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.1.15.4 NOCARDIA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.1.15.4 NOCARDIA_GROUP. ORGANISM 2.16.1.15.4 NOCARDIA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA3. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA3. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS isolate_name= RHA3 BASE COUNT 220 a 233 c 329 g 182 t 3412 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .CCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-U. .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA2. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA2. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16313|g575440 isolate_name= RHA2 BASE COUNT 220 a 233 c 329 g 182 t 3412 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .CCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-U. .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.RHA3_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA3. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA3. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16314|g575441 isolate_name= RHA3 BASE COUNT 220 a 231 c 325 g 178 t 3422 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....C----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G--C(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C C......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA4. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA4. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16317|g575444 isolate_name= RHA4 BASE COUNT 258 a 276 c 374 g 211 t 3257 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 A......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA6. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA6. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16316|g575443 isolate_name= RHA6 BASE COUNT 218 a 227 c 315 g 173 t 3443 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) ...CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA....... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsu.wrtslv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tsukamurella wratislaviensis.. ACCESSION No information KEYWORDS No information. SOURCE Tsukamurella wratislaviensis. ORGANISM Tsukamurella wratislaviensis. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE Phylogeny of Tsukamurella wratislaviensis JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z37138|g1143613 BASE COUNT 334 a 362 c 501 g 277 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CG-AGG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.opacu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus opacus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus opacus. ORGANISM Rhodococcus opacus. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80631|g671622 BASE COUNT 337 a 362 c 497 g 276 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CA-NAG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.opacus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus opacus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus opacus. ORGANISM Rhodococcus opacus. REFERENCE 1 AUTHORS Klatte,S., Kroppenstedt,R.M. and Rainey,F. TITLE Rodococcus opacus sp. nov., an unusual nutritionally versatile Rhodococcus-species JOURNAL Syst. Appl. Microbiol. 17, 355-360 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80630|g640000 BASE COUNT 337 a 364 c 499 g 280 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CA-NAG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -C-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.opacu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus opacus.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus opacus. ORGANISM Rhodococcus opacus. REFERENCE 1 AUTHORS Zaitsev,G.M., Uotila,J.S., Tsytko,I.V., Lobanok,A.G. and Salkinoja-Salonen,M.S. TITLE Utilization of halogenated benzenes, phenols and benzoates by Rhodococcus opacus strain GM14 JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89710|g1019095 BASE COUNT 333 a 358 c 492 g 276 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CCU -CG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GN-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -C-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.percol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus percolatus str. BMS1. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus percolatus str. BMS1. ORGANISM Rhodococcus percolatus. REFERENCE 1 AUTHORS Briglia,M., Rainey,F.A., Stackebrandt,E., Schraa,G. and Salkinoja-Salonen,M.S. TITLE Rhodococcus percolatus sp. nov., a bacterium degrading 2,4 , 6-trichlorophenol JOURNAL Int. J. Syst. Bacteriol. 46, 23-30 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92114|g1177616 isolate_name= BMS1; LMAU.R292 BASE COUNT 339 a 366 c 493 g 289 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-N C-CCUG---C -ACUU-C-GG 421 -GAU-AA-NC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CUGU G-AAA-NC-U CA-CAG-A(- UC-A)A-CNU -CG-A-GCU- 1321 -NGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -NUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UNC 1741 CG--UA---- --GC-(UAA- ---C)G-CN- UUAA-UUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -C-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- G--------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-NG -UA--CAGAG GGC-U-G-C- GA-NAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGU AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUN. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.marna2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus marinonascens.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus marinonascens. ORGANISM Rhodococcus marinonascens. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80617|g671621 BASE COUNT 334 a 360 c 496 g 283 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-U--C-G- ---NCU-(-- --------GC 541 AU-------- -)-GAC---- UG-GG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.marnas 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus marinonascens. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus marinonascens. ORGANISM Rhodococcus marinonascens. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81933|g1061228 (bases 1 to 1314) BASE COUNT 299 a 314 c 445 g 254 t 3064 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-C CU-U--C-G- ---GCU-(-- --------GC 541 AU-------- -)-GGC---- UG-GG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.sp8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80616|g671630 BASE COUNT 336 a 358 c 495 g 280 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---NCU-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA1. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA1. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degadation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16312|g575439 isolate_name= RHA1 BASE COUNT 221 a 223 c 313 g 176 t 3443 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) ...CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGGGA-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA....... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spRHA7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. RHA7. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. RHA7. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Tonso,N.L., Iwashita,N. and Fukuda,M. TITLE Phylogenetic evaluation and aromatic degradation capabilities of several Rhodococci JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16315|g575442 isolate_name= RHA7 BASE COUNT 225 a 229 c 324 g 185 t 3413 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....C----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA....... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spP6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp. str. P6. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. str. P6. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Asturias,J.A., Moore,E., Yakimov,M.M., Klatte,S. and Timmis,K .N. TITLE Reclassification of the polychlorinated biphenyl-degraders Acinetobacter sp. P6 and Corynbacterium sp. MB1 as Rhodococcus globerulus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77780|g457016 isolate_name= P6 BASE COUNT 327 a 345 c 472 g 276 t 2956 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--NCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GUG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UAC 1741 .......... .....(.... ....)..... ......CRCU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-Y-CC--G 1861 C-A--GA-AA CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AW----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGR- UA-AC-ACCC -GAN-G-CCA 3121 G-UKG-C-UU -AN-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-AG- AUU-GGGA-C 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.glober 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus globerulus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus globerulus. ORGANISM Rhodococcus globerulus. REFERENCE 1 AUTHORS Asturias,J.A., Moore,E., Yakimov,M.M., Klatte,S. and Timmis ,K.N. TITLE Reclassification of the polychlorinated biphenyl-degraders Acinetobacter sp. P6 and Corynbacterium sp. MB1 as Rhodococcus globerulus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77779|g457015 NCIMB 12315 (T) = IMET 7543 = DSM 43956 = ATCC 25714 BASE COUNT 309 a 319 c 440 g 255 t 3053 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGA-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--ACCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAR -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.globe3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus globerulus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus globerulus. ORGANISM Rhodococcus globerulus. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81931|g1061225 NCIMB 12315 (T) = IMET 7543 = DSM 43956 = ATCC 25714 BASE COUNT 304 a 316 c 440 g 253 t 3063 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CG.... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.globe4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus globerulus. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus globerulus. ORGANISM Rhodococcus globerulus. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80619 BASE COUNT 338 a 360 c 491 g 284 t 2903 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UUU---- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CUU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.spM5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Wang,Y., Garnon,J., Labbe,D., Bergeron,H. and Lau,P.C.K. TITLE Sequence and expression of the bpdC1C2BADE genes involved in the initial steps of biphenyl/chlorobiphenyl degradation by Rhodococcus sp. M5 JOURNAL Gene in press (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27579|g881435 BASE COUNT 328 a 351 c 481 g 276 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-ACG|U CGU---UUGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCC- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.eryth4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus erythropolis. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80618|g671574 Former RDP Sids: Noc.calcar DSM 43188 (T) = NCIMB 8863 = CCM 2597 = ATCC 19369 NB: former name Nocardia calcarea BASE COUNT 335 a 359 c 496 g 284 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G ANCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUN-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.erythr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus erythropolis. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AUTHORS Stackebrandt,E., Smida,J. and Collins,M.D. TITLE Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura) JOURNAL J. Gen. Appl. Microbiol. 34, 341-348 (1988) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53203 DSM 43188 (T) = NCIMB 8863 = CCM 2597 = ATCC 19369 BASE COUNT 301 a 320 c 449 g 265 t 3041 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-NGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUN-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-NG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---NUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUN -CU-N-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACGU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGNAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-U-NC(-G NA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-GA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--UAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCUU-AAAG -CN-N-GNN- UNAGUUCGGA 2941 U-CGGGGUC- (UGCACC-U- N)-GACCNNG -UGAAGU-CG -GRGU-CGC- -UAGUN-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUU-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.eryth3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus erythropolis.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AUTHORS Stubbs,S.L.J. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76691|g854411 BASE COUNT 308 a 332 c 455 g 265 t 3016 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.....G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--C-U- ---AUC-(-- --------GC 541 AU-------- -)-NGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUN-----|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUN| UUUC-NG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-N-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S13A 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S13A. str. S13A. ACCESSION No information KEYWORDS No information. SOURCE str. S13A. str. S13A. ORGANISM str. S13A. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31493|g1143132 isolate_name= S13A BASE COUNT 195 a 207 c 283 g 178 t 3513 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......UUAG |-NGUG-C-- 1201 -AG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGNC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGGGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGN- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCC.. .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.sp33 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus sp. ORGANISM Rhodococcus sp. REFERENCE 1 AUTHORS Paje,M.L., Neilan,B.A. and Couperwhite,I. TITLE Utilization of benzene in liquid and vapor phases by a Rhodococcus sp. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20791|g687733 NB: following bases at 1260n removed:UGUCCGCGACCCCGUGAGGUGGAGCGAAUCCCUUAAAGCU bases 151-167 duplication of bases 132-147 BASE COUNT 326 a 347 c 462 g 286 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG-ACC UUCUAAUACC GGAUAUGA-C CU-C--C-G- ---AUU-(-- --------GC 541 AU-------- -)-GGU---- GG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U--AC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-UGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CCCGU--A 1621 AAC-G-GUGG ---C--CU-- -----CAG|G UGU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCC--U-C 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-CGCCC C|G|C-CUUA G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACGC -AAA-GGAAU UG-ACGGG-G -GGC-CC--G 1861 C-AACUA-AG GCGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GUUC(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUCCG- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU UAU---CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC---AG -AA---AGAG GGC-U-GUC- GA-GAC-C(G 2881 -U-A)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAACCUA C)-GACCCCG -UGAAGU-CG -GAGU--GC- -UAGUA-AUC 3001 GC-AGA-(UC --G-AA-)-G CUG-CGGUG- AA-AC-GUU- CCC--GG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACU--- --UCA-UAAA G--UU-CGG- U---C-ACCC -GAA-G-CCG 3121 GUUGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCG....... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.erthrs 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus erythropolis. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AUTHORS Rainey,F.A., Klatte,S., Kroppenstedt,R.M. and Stackebrandt,E . TITLE Dietzia, a new genus including Dietzia maris comb. nov., formerly Rhodococcus maris JOURNAL Int. J. Syst. Bacteriol. 45, 32-36 (1995) STANDARD No information REFERENCE 2 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79289|g639997 Former RDP Sids: Rco.erthr2 DSM 43066 (T) = NCIMB 11148 = DSM 763 = ATCC 4277 = ICPB 4417 BASE COUNT 335 a 358 c 498 g 284 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUGAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--N-G- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- UU-GG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-UU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.eryth5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus erythropolis. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus erythropolis. ORGANISM Rhodococcus erythropolis. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81929|g1061223 ATCC 4277 = NCIMB 11148 = DSM 763 = DSM 43066 (T) = ICPB 4417 BASE COUNT 301 a 313 c 441 g 255 t 3066 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-C--N-N- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- UU-GG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C AG-CAG-C(- UC-A)A-CUG -CU-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGA -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.luteus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus luteus.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus luteus. ORGANISM Rhodococcus luteus. REFERENCE 1 AUTHORS Klatte,S., Jahnke,K.D., Kroppenstedt,R.M., Rainey,F. and Stackebrandt,E. TITLE Rhodococcus luteus is a later subjective synonym of Rhodococcus fascians JOURNAL Int. J. Syst. Bacteriol. 44, 627-630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79187|g562784 BASE COUNT 335 a 351 c 495 g 285 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-U- ---CNU-(-- --------GC 541 AU-------- -)-GUU---- GU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUG-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AC-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.fasci4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus fascians. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus fascians. ORGANISM Rhodococcus fascians. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81932|g1061226 BASE COUNT 300 a 307 c 446 g 255 t 3068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-G- ---NNN-(-- --------GC 541 AU-------- -)-GNN---- NU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUG-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AC-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.fascia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus fascians str. CF19 DSM 20131. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus fascians str. CF19 DSM 20131. ORGANISM Rhodococcus fascians. REFERENCE 1 AUTHORS Stackebrandt,E., Smida,J. and Collins,M.D. TITLE Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura) JOURNAL J. Gen. Appl. Microbiol. 34, 341-348 (1988) STANDARD No information COMMENTS Organism information Culture collection: DSM 20131 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53204 DSM 20131 = ATCC 12975 isolate_name= CF19 BASE COUNT 301 a 310 c 426 g 257 t 3082 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- ..A--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-NA-GC U--------- ------UG-- G(-GAAA-)C -UNGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-G- ---CAU-(-- --------GC 541 AU-------- -)-NUN---- UN-GU----N GU-NGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUN---- 661 ----CAGG-- AUN-----|G CCCNC----- -GG|----CC U--AUCA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-NG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-NG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UNGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GNN|U NGU---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -NGCA-GGCG A-UAC-GGGC A-GACUA-GA GUG-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- NUA-GCG(-G UNAAA)-UNC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AU-GA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-NGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUNG G--CG-CU-- -------A|G -GU-GU-NGG -UU-CCU--- ---------- 1681 -(-UC-CA)- ---------- ---------- -C-------- -------GGG -AUCUN-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|N|G-CCU- N-GGGNGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-A AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGU-C-AG -UA--CANAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNG- UNN-AGU--- --NCA-UGAA G--UU-CGG- UA-AC-ACCC -GAA---GCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.fasci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus fascians.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus fascians. ORGANISM Rhodococcus fascians. REFERENCE 1 AUTHORS Klatte,S., Jahnke,K.D., Kroppenstedt,R.M., Rainey,F. and Stackebrandt,E. TITLE Rhodococcus luteus is a later subjective synonym of Rhodococcus fascians JOURNAL Int. J. Syst. Bacteriol. 44, 627-630 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X79186|g562783 BASE COUNT 323 a 346 c 479 g 276 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-G- ---CAU-(-- --------GC 541 AU-------- -)-GUG---- UU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUG-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AC-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCCC-- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CC-G.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.fasci3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus fascians. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus fascians. ORGANISM Rhodococcus fascians. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81930|g1061224 BASE COUNT 301 a 308 c 445 g 258 t 3064 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC U--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-G- ---CAU-(-- --------GC 541 AU-------- -)-GUG---- UU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GUGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GCU- 1321 -UGCA-GGCG A-UAC-GGGC A-GACUU-GA GUG-----UU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--AC-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU--CC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCUG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AAC 1981 -CGU-A--(- GAGA-)-UAC -G-GUCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- G-UAA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- GA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-C..... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cor.hoagii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Corynebacterium hoagii. ACCESSION No information KEYWORDS No information. SOURCE Corynebacterium hoagii. ORGANISM Corynebacterium hoagii. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Boiron,P., Monteil,H. and Christen,R. TITLE Phylogeny of the genus Corynebacterium deduced from analyses of small-subunit ribosomal DNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 740-746 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82052|g1061094 ATCC 7005 (T) = NCTC 10673 = IMET 11373 = DSM 20295 BASE COUNT 290 a 319 c 450 g 245 t 3072 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -A.....).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi.. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi. ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Stahl,D.A. and Urbance,J.W. TITLE The division between fast- and slow-growing species corresponds to natural relationships among the mycobacteria JOURNAL J. Bacteriol. 172, 116-124 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29574 legacy_attribute= equine lung isolate U of Illinois Vet Med Diagnostic Medicine BASE COUNT 291 a 331 c 466 g 257 t 3031 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..UCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 -------CGG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGN-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UNCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU NAA--CCUN| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUM-A) U-M-C-GUMG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUM -CU-GGGC|G UMAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -YA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-N--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-Y AA)-CUY-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GN-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCNGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi. ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Takahashi,T., Tsuji,M., Kikuchi,N., Ishihara,C., Osanai,T., Kasai,N., Yanagawa,R. and Hiramune,T. TITLE Assignment of the corynebacterial agent of urinary calculus in young rats by the comparative sequence analysis of the 16S rRNA genes of corynebacteia JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D37876|g529090 BASE COUNT 306 a 332 c 456 g 253 t 3029 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------C (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUN-(-- --------NC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUN---N-|N N-CGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGY ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG--C-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC N|C|G-CCU- G-GNNAGUAC 1801 GGC-C---(G CAN)---N-N NN-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- NG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G .......... |....(..UG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA...... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi. ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80594|g599960 (bases 29 to 1397) ATCC 33707 = CIP 1784.88 BASE COUNT 303 a 345 c 465 g 255 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CN -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi. ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80603|g599961 (bases 29 to 1397) ATCC 6939 (T) = CIP 1782.88 BASE COUNT 303 a 345 c 465 g 255 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CN -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi. ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80614|g639996 DSM 20307 (T) = NCTC 1621 = ATCC 25729 BASE COUNT 326 a 369 c 508 g 275 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rco.equi6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhodococcus equi str. 545 DSM 43199 (T). ACCESSION No information KEYWORDS No information. SOURCE Rhodococcus equi str. 545 DSM 43199 (T). ORGANISM Rhodococcus equi. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R., Klatte,S. and Stackebrandt,E. TITLE Polyphasic Evidence for the Transfer of Rhodococcus roseus to Rhodococcus rhodochrous JOURNAL Int. J. Syst. Bacteriol. 45, 101-103 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43199 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80613|g639989 Former RDP Sids: Noc.restrc DSM 43199 (T) = NCIMB 10027 = ATCC 14887 isolate_name= 545 NB: former name Nocardia restrica BASE COUNT 326 a 370 c 505 g 274 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-GG----G UU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--CCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-AG-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-CA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UCG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-U- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-CG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMKN6 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMKN6.. ACCESSION No information KEYWORDS No information. SOURCE clone SMKN6. ORGANISM clone SMKN6. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schon,G. and Gobel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78665|g509734 BASE COUNT 68 a 72 c 112 g 56 t 4068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... .AC|-AC--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCUG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CU-C--C-U- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- GG-GG----G UU-GGAAA-- ---G------ ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CAGG-- AUG---A-|G UCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-G-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-G.... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.farci4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia farcinica. ACCESSION No information KEYWORDS No information. SOURCE Nocardia farcinica. ORGANISM Nocardia farcinica. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80605|g599918 (bases 29 to 1394) BASE COUNT 305 a 339 c 458 g 262 t 3012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.farci3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia farcinica. ACCESSION No information KEYWORDS No information. SOURCE Nocardia farcinica. ORGANISM Nocardia farcinica. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80604|g599917 (bases 29 to 1394) BASE COUNT 305 a 339 c 458 g 262 t 3012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.farci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia farcinica str. M. Goodfellow N898 ATCC 3318. ACCESSION No information KEYWORDS No information. SOURCE Nocardia farcinica str. M. Goodfellow N898 ATCC 3318. ORGANISM Nocardia farcinica. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 3318 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80595|g599915 (bases 29 to 1394) ATCC 3318 = CIP 782.74 isolate_name= M. Goodfellow N898 BASE COUNT 305 a 339 c 458 g 262 t 3012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.farcin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia farcinica str. M. Goodfellow N898 ATCC 3318. ACCESSION No information KEYWORDS No information. SOURCE Nocardia farcinica str. M. Goodfellow N898 ATCC 3318. ORGANISM Nocardia farcinica. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 3318 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36936|g599916 ATCC 3318 = CIP 782.74 isolate_name= M. Goodfellow N898 BASE COUNT 330 a 364 c 501 g 279 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- CC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GAG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.otiti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia otitidiscaviarum.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia otitidiscaviarum. ORGANISM Nocardia otitidiscaviarum. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80611|g671580 BASE COUNT 328 a 366 c 502 g 281 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CC|UG 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.farci5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia farcinica.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia farcinica. ORGANISM Nocardia farcinica. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80610|g671577 BASE COUNT 326 a 363 c 496 g 279 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G ANCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CCUG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.trnsv3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia transvalensis str. N1202 DSM 43405 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia transvalensis str. N1202 DSM 43405 (T). ORGANISM Nocardia transvalensis. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43405 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80609 isolate_name= N1202 BASE COUNT 329 a 359 c 503 g 280 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G ANCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-GU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.trnsvl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia transvalensis str. N1202 DSM 43405 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia transvalensis str. N1202 DSM 43405 (T). ORGANISM Nocardia transvalensis. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43405 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36926|g599930 isolate_name= N1202 BASE COUNT 330 a 359 c 505 g 280 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.trnsv2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia transvalensis. ACCESSION No information KEYWORDS No information. SOURCE Nocardia transvalensis. ORGANISM Nocardia transvalensis. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80598|g599931 (bases 29 to 1394) ATCC 6865 (T) = CIP 1753.88 BASE COUNT 306 a 336 c 461 g 260 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GGU---- GU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-C-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCGC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GAGA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -UGC-A--(- GAGA-)-UGU -A-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--CUG- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.brasil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 (T). ORGANISM Nocardia brasiliensis. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19296 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36935|g599910 ATCC 19296 (T) = CIP 337.56 isolate_name= M. Goodfellow N318 BASE COUNT 331 a 362 c 500 g 281 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--U-C- ---AGU-(-- --------GC 541 AU-------- -)-GCU---- GU-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.brasi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia brasiliensis str. M. Goodfellow N318 ATCC 19296 (T). ORGANISM Nocardia brasiliensis. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19296 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80591|g599912 (bases 29 to 1394) ATCC 19296 (T) = CIP 337.56 isolate_name= M. Goodfellow N318 BASE COUNT 307 a 340 c 456 g 262 t 3011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--U-C- ---AGU-(-- --------GC 541 AU-------- -)-GCU---- GU-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.brasi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia brasiliensis.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia brasiliensis. ORGANISM Nocardia brasiliensis. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80608|g671571 BASE COUNT 328 a 362 c 495 g 280 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--U-C- ---AGU-(-- --------GC 541 AU-------- -)-GCU---- GU-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- G-CAG-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.aster4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia asteroides. ACCESSION No information KEYWORDS No information. SOURCE Nocardia asteroides. ORGANISM Nocardia asteroides. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80606 BASE COUNT 333 a 359 c 497 g 280 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UG-AG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GNA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGN---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC G-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.aster2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia asteroides str. M. Goodfellow N317 ATCC 19247 (T). ORGANISM Nocardia asteroides. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19247 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36934|g599907 isolate_name= M. Goodfellow N317 BASE COUNT 334 a 358 c 499 g 281 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---U -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--C-G- ---GAU-(-- --------GC 541 AU-------- -)-GUC---- UG-AG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGC---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC G-GUCUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.aster3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia asteroides. ACCESSION No information KEYWORDS No information. SOURCE Nocardia asteroides. ORGANISM Nocardia asteroides. REFERENCE 1 AUTHORS Ruimy,R., Riegel,P., Carlotti,A., Boiron,P., Bernardin,G., Monteil,H., Wallace,R.J. Jr. and Christen,R. TITLE Nocardia pseudobrasiliensis sp. nov., a new species of Nocardia which groups bacterial strains previously identified as Nocardia brasiliensis and associated with invasive diseases JOURNAL Int. J. Syst. Bacteriol. 46 (1), 259-264 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84851|g1197344 ATCC 23824 = CIP 3006.92 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 316 a 347 c 476 g 267 t 2970 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUU-C-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-U- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- GG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UU- 1261 G-UC-GCG|U CGU---CCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GGCG A-UAC-GGGC A-GACUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUNNN---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-G.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.astero 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia asteroides.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia asteroides. ORGANISM Nocardia asteroides. REFERENCE 1 AUTHORS Rogall,T., Wolters,J., Flohr,T. and Boettger,E.C. TITLE Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium JOURNAL Int. J. Syst. Bacteriol. 40, 323-330 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57949 BASE COUNT 328 a 349 c 487 g 279 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U--A-C- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- GU-UU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-NUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAG....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.aste05 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia asteroides str. N 19 DSM 43005. ACCESSION No information KEYWORDS No information. SOURCE Nocardia asteroides str. N 19 DSM 43005. ORGANISM Nocardia asteroides. REFERENCE 1 AUTHORS Stackebrandt,E., Smida,J. and Collins,M.D. TITLE Evidence of phylogenetic heterogeneity within the genus Rhodococcus: Revival of the genus Gordona (Tsukamura) JOURNAL J. Gen. Appl. Microbiol. 34, 341-348 (1988) STANDARD No information COMMENTS Organism information Culture collection: DSM 43005 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53205 DSM 43005 = ATCC 3306 isolate_name= N 19 NB: not the (T) strain BASE COUNT 294 a 323 c 454 g 265 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..C|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UGA--UCU-G C-CUNG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-U-CG-C- ----UC-(-- --------GC 541 AU-------- -)-NGU---- GU-UU----G GU-NGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-G GU----G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GC- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCN-NNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -GCCGGCN-A ACUAC-GUG( CCA--GCNNC CGCGGUA-A) U-A-C-GUAG |-NGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUG -CU-GGGC|G UAAA-GAGC- UGG-UGG-GC -G|-GC-UN- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GCU- 1321 -UGCG-GU-G A-UAC-GGGC A-GGCUU-GA GUA-----CU U-CG-GGGGN GGC-U|GGAA 1381 UU-CCUNGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-U-UC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UR-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UGC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|U|G-CNU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG N-)------- NG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-NG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GN-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-N AA)-CUC-G- -GAGG-A-AG 2761 U-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUN- ---------- GA-GCGAA-U CCCUN-AAAG -CC-G-GNN- UUAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- N)-GACCCNG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUU-ACG--- --NCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA---CCG 3121 G-UGG-C-CU -NA-CCC--- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.carne3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia carnea.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia carnea. ORGANISM Nocardia carnea. REFERENCE 1 AUTHORS Rainey,F.A., Burghardt,J., Kroppenstedt,R.M., Klatte,S. and Stackebrandt,E. TITLE Phylogenetic analysis of the genera Rhodococcus and Norcardia and evidence for the evolutionary origin of the genus Nocardia from within the radiation of Rhodococcus species JOURNAL Microbiology 141, 523-528 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80607|g671572 BASE COUNT 331 a 356 c 495 g 281 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-A- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- UG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-UA U-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.carnea 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia carnea str. N1200 DSM 43397 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia carnea str. N1200 DSM 43397 (T). ORGANISM Nocardia carnea. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43397 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36929|g599913 isolate_name= N1200 BASE COUNT 334 a 357 c 499 g 282 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-A- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- UG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-UA U-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.carne2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia carnea. ACCESSION No information KEYWORDS No information. SOURCE Nocardia carnea. ORGANISM Nocardia carnea. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80602|g599914 (bases 29 to 1395) ATCC 6847 (T) = CIP 1757.88 BASE COUNT 310 a 334 c 457 g 264 t 3011 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CU-G--C-A- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- UG-UG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CU 1021 --CC-GAC-- GA-AG-C--- ---------( -----GAAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-GGA-G-UA U-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AU-G NC-GGG-C(- UC-A)A-CCC -CG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.brevic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia brevicatena str. N1201 DSM 43024 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia brevicatena str. N1201 DSM 43024 (T). ORGANISM Nocardia brevicatena. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43024 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36928|g599911 isolate_name= N1201 BASE COUNT 332 a 359 c 498 g 285 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UU-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- CG-GG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( UCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-UCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU C-CA-GGGGA GAC-U|GGAA 1381 UU-CUUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACC--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.brevi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia brevicatena. ACCESSION No information KEYWORDS No information. SOURCE Nocardia brevicatena. ORGANISM Nocardia brevicatena. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80600|g599909 (bases 29 to 1395) ATCC 15333 (T) = CIP 1755.88 BASE COUNT 308 a 336 c 459 g 263 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C UU-C--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- CG-GG----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GC-UU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-A-GCU- 1321 -UGCG-GUCG A-UAC-GGGC A-GGCUU-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CUUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----ACC 1981 -UGC-A--(- GAGA-)-UGU -A-GGCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.vaccni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia vaccinii str. N1199 DSM 43285 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia vaccinii str. N1199 DSM 43285 (T). ORGANISM Nocardia vaccinii. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 43285 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36927|g599936 isolate_name= N1199 BASE COUNT 332 a 357 c 501 g 282 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GCU- -GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GAU---- CG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-A UA-CAG-C(- UC-A)A-CUG -UG-U-GCU- 1321 -UGCG-GUCG A-UAC-GGGC G-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUC-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.vaccn2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia vaccinii. ACCESSION No information KEYWORDS No information. SOURCE Nocardia vaccinii. ORGANISM Nocardia vaccinii. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80597|g599935 (bases 29 to 1395) ATCC 11092 (T) = CIP 1775.88 BASE COUNT 308 a 334 c 458 g 264 t 3012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-U--U-G- ---GUU-(-- --------GC 541 AU-------- -)-GAU---- CG-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---N-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GGA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-A UA-CAG-C(- UC-A)A-CUG -UG-U-GCU- 1321 -UGCG-GUCG A-UAC-GGGC G-GACUA-GA GUA-----CU G-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GA-CGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GCA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--CG-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCGNC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.nova2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia nova. ACCESSION No information KEYWORDS No information. SOURCE Nocardia nova. ORGANISM Nocardia nova. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80593|g599922 (bases 29 to 1395) ATCC 33726 (T) = CIP 3025.92 BASE COUNT 315 a 331 c 451 g 265 t 3014 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -N-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---N-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGA---UUGU G-AAA-AC-U UG-CAG-C(- UC-A)A-CUG -CA-A-GCU- 1321 -UGCA-GUCG A-UAC-GGGC G-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.nova 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia nova str. N1112 JCM 6044 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia nova str. N1112 JCM 6044 (T). ORGANISM Nocardia nova. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 6044 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36930|g599921 isolate_name= N1112 BASE COUNT 338 a 354 c 496 g 284 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A GCAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-UC- 1261 G-UC-GCG|U CGA---UUGU G-AAA-AC-U UG-CAG-C(- UC-A)A-CUG -CA-A-GCU- 1321 -UGCA-GUCG A-UAC-GGGC G-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCAG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UUG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.seriol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia seriolae str. N1116 JCM 3360 (T). ACCESSION No information KEYWORDS No information. SOURCE Nocardia seriolae str. N1116 JCM 3360 (T). ORGANISM Nocardia seriolae. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE A phylogenetic analysis of the genus Nocardia using 16S ribosomal RNA gene sequences JOURNAL Int. J. Syst. Bacteriol. 45, 240-245 (1995) STANDARD No information COMMENTS Organism information Culture collection: JCM 3360 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36925|g599928 isolate_name= N1116 BASE COUNT 337 a 357 c 498 g 280 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CC-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UC-GG----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-CU- 1261 G-UC-ACG|U CGG---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.serio2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia seriolae. ACCESSION No information KEYWORDS No information. SOURCE Nocardia seriolae. ORGANISM Nocardia seriolae. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80592|g599929 (bases 29 to 1396) BASE COUNT 313 a 336 c 456 g 261 t 3010 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUUG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-G CC-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UC-GG----G UU-GGAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-CU- 1261 G-UC-ACG|U CGG---UCGU G-AAA-AC-U CA-CAG-C(- UC-A)A-CUG -UG-G-GCC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUANC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCCC-- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.otiti4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia otitidiscaviarum.. ACCESSION No information KEYWORDS No information. SOURCE Nocardia otitidiscaviarum. ORGANISM Nocardia otitidiscaviarum. REFERENCE 1 AUTHORS Chun,J. and Goodfellow,M. TITLE Phylogeny of Nocardiae JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z46885|g599924 BASE COUNT 84 a 99 c 122 g 68 t 4003 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ......GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- --UCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG AUU-GG-CG- AUU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.otiti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia otitidiscaviarum. ACCESSION No information KEYWORDS No information. SOURCE Nocardia otitidiscaviarum. ORGANISM Nocardia otitidiscaviarum. REFERENCE 1 AUTHORS Ruimy,R., Boiron,P., Biovin,V. and Christen,R. TITLE A phylogeny of the genus Nocardia deduced from the analysis of small-subunit ribosomal DNA sequences, including transfer of Nocardia amarae to the genus Gordona as Gordona amarae comb. nov. JOURNAL FEMS Microbiol. Lett. 123, 261-268 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80599|g599923 (bases 29 to 1394) ATCC 14629 (T) = DSM 43242 = CIP 1752.88 = IFO 14405 (T) = NCTC 1934 BASE COUNT 311 a 338 c 456 g 258 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GCA A-GUC-GAGC 121 G--GU-AA-G -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------C- -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CGAG-- AUG---G-|- CCCGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-G UG-CAG-C(- UC-A)A-CUG -CG-C-GNC- 1321 -UGCG-GUCG A-UAC-GGGC A-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -N.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Noc.otitid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Nocardia otitidiscaviarum. ACCESSION No information KEYWORDS No information. SOURCE Nocardia otitidiscaviarum. ORGANISM Nocardia otitidiscaviarum. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE A phylogenetic analysis of some high G+C gram positive species JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59056 ATCC 14629 (T) = DSM 43242 = CIP 1752.88 = IFO 14405 (T) = NCTC 1934 BASE COUNT 330 a 354 c 487 g 274 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUCAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU-AA-- UG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UAC|-AC--G AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--UCU-G C-CUCG---C -ACUC-U-GG 421 -GAU-AA-GC C--------- ------UG-- G(-GAAA-)C -UGGG-U--C UAAUACC-GG 481 AU-AUG---- ---------- -------A-C CA-C--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GGU---- UU-GU----G GU-GGAAA-- ---GG----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----C--U- G--GUG---- 661 ----CGAG-- AUG---G-|N CCNGC----- -GG|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UUUC-GA-CA 1021 --GG-GAC-- GA-AG-C--- ---------( -----GCAA- ---------) ---------- 1081 ---------- -------G-- U-GA-CGGU- A-CCU-G-UA G-AA--GAAG ---------C 1141 -ACCGGCC-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- UUG-UAG-GC -G|-GU-CU- 1261 G-UC-GCG|U CGA---UCGU G-AAA-AC-G UG-CAG-C(- UC-A)A-CUG -CG-C-GCC- 1321 -UGCG-GNCG A-UAC-GGGC A-GACUA-GA GUA-----CU U-CA-GGGGA GAC-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -GUCUCUG-- ---------- ---------- ---------G 1501 GAA--GU-AA CUGACG-CUG AG-A------ -------AG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-GUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-UCC--- ---------- 1681 -(UUC-CA)- ---------- ---------- -C-------- -------GGG -AUCCG-UGC 1741 NG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGA -UUAAUU-CG -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UA|-C- ---------A ---CCGG--- -AA----AGC 1981 -CGU-A--(- GAGA-)-UAC -G-GCCC--- ---------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UG U-)------- GG-------- ---------| UCG-GU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUA- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-NA-CU-C- G-UGA-GA-G A-CU-G-CCG --GG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-UCA-CA-C AUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-CGGGGUC- (UGCAAC-U- C)-GACCCCG -UGAAGU-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCAAC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGAA A--GU-CGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -NNCUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG ANN-GG-CN- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2-THE 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2 THERMOANAEROBACTER_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2 THERMOANAEROBACTER_AND_RELATIVES. ORGANISM 2.16.2 THERMOANAEROBACTER_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.1 DFM.GEOTHERMICUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.1 DFM.GEOTHERMICUM_GROUP. ORGANISM 2.16.2.1 DFM.GEOTHERMICUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SporeA 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sporeA. str. sporeA. ACCESSION No information KEYWORDS No information. SOURCE str. sporeA. str. sporeA. ORGANISM str. sporeA. REFERENCE 1 AUTHORS Harmsen,H. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91169|g984728 legacy_attribute= biovar:propionate-oxidizing bacterium isolate_name= sporeA BASE COUNT 342 a 316 c 443 g 254 t 3021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGA- UAA--CCU-G C-CUUA---A -CGAC-C-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -UGGC-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CA-A--G-GG ---AAC-(-- --------AC 541 AU-------- -)-GUU---U UU-UU----A AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAU---- 661 ----UAAG-- AUG---G-|G UCCGC----- -GU|----CC C--AUUA-G- CUG-G---UU 721 GG-AG-GU-( GU-AAG-AG) -A-CCCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CN| -G-GCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUUC| UGUC-UU-CA 1021 --GG-GAA-- GA-A------ ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUC--AAGGU G-AAA-AC-U AU-CGG-C(- UC-A)A-CCG -GU-A-GCG- 1321 -UGCC-UGAG A-AAC-UGGG G-GACUU-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-UG CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---CCUG--- -AU----GAC 1981 -UGU-G--(- GAAA-)-CAC -A-GAGU--- UU-------- -UGCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGUA------ ----AA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CG--UUU- 2281 AG--UUGC-U AA-CGC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|A 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUN-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GNAAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAU-U- C)-GCCUGCA -UGAAGU-CG -GNAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGA- CA-AC-ACCC CGAA-G-CCG 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -CUUNAACA- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGAG-C-N G-CC-GU-CG A-AGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SporeB 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. sporeB. str. sporeB. ACCESSION No information KEYWORDS No information. SOURCE str. sporeB. str. sporeB. ORGANISM str. sporeB. REFERENCE 1 AUTHORS Harmsen,H. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91170|g984729 legacy_attribute= biovar:propionate-oxidizing bacterium isolate_name= sporeB BASE COUNT 344 a 314 c 443 g 258 t 3017 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGA- UAA--CCU-G C-CUUA---A -UGAC-C-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -UGGC-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CA-C--G-GA --AAAC-(-- --------AC 541 AU-------- -)-GUU---U GG-GU----A AG--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAU---- 661 ----UAAG-- AUG---G-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-GU-( GU-AAG-AG) -A-CCCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AUUC| UGUC-UU-CA 1021 --GG-GAA-- GA-A------ ---------( -----GAAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 A-CU-AAG|U CUU--AUGGU G-AAA-AC-U AU-CGG-C(- UC-A)A-CCG -GU-A-GCG- 1321 -UGCC-UGAG A-AAC-UGGU A-GACUU-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AGC 1981 -CUA-U--(- GAAA-)-GUA -G-GUUU--- UC-------- -UAUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAUG------ ----GA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CG--UUU- 2281 AG--UUGC-U AA-CGC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|A 2701 G-CA-CU-C- U-AGA-GG-A A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUN-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAU-U- C)-GCCUGCA -UGAAGU-CG -GNAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGA- CA-AC-ACCC CGAA-G-CCG 3121 G-UGA-C-UU -AA-CCU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-N G-CC-GU-CG A-AGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.geothr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum geothermicum. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum geothermicum. ORGANISM Desulfotomaculum geothermicum. REFERENCE 1 AUTHORS Fardeau,M., Ollivier,B., Patel,B.K.C., Dwivedi,P., Ragot,M. and Garcia,J. TITLE Isolation and characterization of a thermophilic sulfate-reducing bacterium, Desulfotomaculum thermosapovorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 218-221 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80789|g693929 BASE COUNT 351 a 361 c 468 g 263 t 2933 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GUUA AGCGAGA-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UUUUG CCUAAC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CCAU---U -AGAC-C-GG 421 -GAU-AA-CG C--------- ------UG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U CA-U--C-CG ---AUC-(-- --------GC 541 CU-------- -)-GAU---C GG-AU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----AUGG-- AUG---G-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CCCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-CA-GG 1021 --GG-GAA-- GA-A------ ---------( -----GGA-- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-C-UG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-GA- 1261 A-GC-AAG|U CAG---GAGU G-AAA-CC-C AG-CGG-C(- UC-A)A-CCG -CU-G-GCU- 1321 -GGUU-UCUG A-AAC-UGUA U-UGCUU-GA GUG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CGCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GCACN C|C|U-CCU- G-GGGAGUAC 1801 GUC-C---(G CAA)---G-C CG-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--C 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------N ---CCCG--- -CC-----AG 1981 -CCA-U--(- GAAAC)-AUG -G-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A C-)------- GG-------- ----GA--A| CGG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNN -GU)-CCCGC AN-------- CGAG-C--GC AACCC-CU-A |-CC--UCC- 2281 CA--UUGC-C AG-CNC---- ---------- ---------- ---G(---UA ---ACG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-NA-CU-C- U-AAA-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UN-ANN--U. .......... .......... .......... .......... 2821 .........C GUG--CUACA AUGGC-C-GG -UAA-CAGAC GGA-G-N-C- GA-ACN--(G 2881 -CGA)GGUG- ---------- GA-GCAAA-N CCCAC-AAAG -CC-G-GUC- CCAGUUCGGA 2941 N-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGNA A--GU-CGU- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-N-CU -AA-CC---- ---------- ---------- -----(---- -UUAUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CG A-AGGU-GGG GUC-GG-UA- AUU-GGGG-U 3301 G---AANUC- GUAA-CAAGG UANCC-GUAU C(GG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.thsapv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum thermosapovorans str. MLF DSM 6562 (T). ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum thermosapovorans str. MLF DSM 6562 (T). ORGANISM Desulfotomaculum thermosapovorans. REFERENCE 1 AUTHORS Fardeau,M., Ollivier,B., Patel,B.K.C., Dwivedi,P., Ragot,M. and Garcia,J. TITLE Isolation and characterization of a thermophilic sulfate-reducing bacterium, Desulfotomaculum thermosapovorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 218-221 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6562 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26315|g452365 Former RDP Sids: Dfm.thacid isolate_name= MLF NB: former name Desulfotomaculum thermoacidovorans BASE COUNT 369 a 381 c 496 g 282 t 2848 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GUUU AACGAGA-AG (--CU----- ---------- ---------- 241 --------UA -)CU-UUUUG UUAAAC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CCAA---U -AGCC-U-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U CA-C--C-GG ---AUU-(-- --------GC 541 AU-------- -)-GGU---C CG-GU----G AA--GAAA-- ---GGU---- ---------- 601 --(------- ---CCAA--- ---)------ ---------| ----AC--C- G--CUA---- 661 ----CUGG-- AUG---G-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-CA-GA 1021 --GG-GAA-- GA-A------ ---------( -----GCAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-UG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-CA- 1261 A-GU-AAG|U CAG---UCGU G-AAA-CC-C AG-CGG-C(- UU-A)A-CCG -CU-G-GCU- 1321 -GGCG-AUAG A-AAC-UGCG U-GGCUU-GA GUG-----CA G-UA-GAGGG GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CCCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- CUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CA-)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -GC----CGC 1981 -UGU-G--(- GAAA-)-CAC -A-GUUU--- UC-------- -CAUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAUG------ ----GA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UGAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAGAC GGC-A-G-C- GC-AGC-C(G 2881 -CGA)GGCG- ---------- AA-GCGAA-C CCGAU-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -AA-CCC--- ---------- ---------- -----(---- -UUAAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GU-CG A-AGGU-GGG GUC-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.thbenz 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum thermobenzoicum.. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum thermobenzoicum. ORGANISM Desulfotomaculum thermobenzoicum. REFERENCE 1 AUTHORS Redburn,A.C. and Patel,B.K.C. TITLE Phylogenetic analysis of Desulfotomaculum thermobenzoicum using polymerase chain reaction-amplified 16S rRNA-specific DNA JOURNAL FEMS Microbiol. Lett. 113, 81-86 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L15628 BASE COUNT 389 a 390 c 530 g 274 t 2793 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 GGAUU----G AG---AGGUG AGA-GGU-GA GAGG-UUAGA A--------- ---------- 181 ---------- ---------- -GUGAGA-UU (------AAG AAGGCUUUGG CAAAGCACAG 241 ACAAUA---- -)GA-UCUCA C--------- ---------- ---------- ---------- 301 ---------- AUCUCA-CCU CUC-ACA-UC UCACCU---- CUC|-AA--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CCAU---U -AGAC-C-GG 421 -GAN-AA-CG C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-C CC-A--C-UG ---GCC-(-- --------GC 541 AU-------- -)-GGU---C GG-GG----G AG--GAAA-- ---GGG---- ---------- 601 --(------- ---GGAA--- ---)------ ---------| ----CC--C- G--CUA---- 661 ----AUGG-- AUG---G-|G UNCGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A U|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GG-GAC-- GA-A------ ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-U-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-CAG-NG -C|-NU-NC- 1261 A-AG-AAG|U CAG---GGGU G-AAA-UA-C CG-CAG-C(- UC-A)A-CUG -CG-G-GGG- 1321 -UGCC-UUUG A-AAC-CAUU G-GGCUU--A GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGAGC-CUA GG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- UA-------- 1681 -(UAU-AA)C C--------- ---------- ---------- --------CC -CUCAG-UCC 1741 CG--UA---- --GC-(AAA- ---C)G-CA- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NN-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCUG--- ACA----GCC 1981 -UG--U--(- GAAA-)-AGC -A-GGGU--- UU-------- ---UC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U A-)------- GA-------- ----GG---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CG--GUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAC-CG-A A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGC-A-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-CGA- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CG A-AGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.austra 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum australicum str. AB33 ACM 3917. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum australicum str. AB33 ACM 3917. ORGANISM Desulfotomaculum australicum. REFERENCE 1 AUTHORS Patel,B.K., Love,C.A. and Stackebrandt,E. TITLE Helix 6 of the 16S rRNA of the bacterium Desulfotomaculum australicum exhibits an unusual structural idiosyncrasy JOURNAL Nucleic Acids Res. 20, 5483-5483 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96665 isolate_name= AB33 BASE COUNT 372 a 381 c 536 g 269 t 2818 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-GUC-GAGC 121 G--GG----U AA---CGGAG GUCGGUC-A- UCGGAGGUC- AGAA-GUCAG AU-AAGAAGC 181 AA-------- ---------- ----GUG-GC (--CUGA--- ---------- ---------- 241 ------GGCA -)GU-UGC-- ---------- ---------- ---------- GACGAAAG-A 301 UCUGGC-AUC C-GAUUUCCG A-C-GGCCGA CUUCCG---- UUG|-CC--- AGC--GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CCAU---U -AGAC-C-GG 421 -GAU-AA-CG C--------- ------UG-- G(-CAAA-)C -UGGC-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CC-C--U-GG ---UUC-(-- --------GC 541 AU-------- -)-GGA---C UG-GG----G AG--GAAA-- ---GGG---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----CC--C- G--CUA---- 661 ----AUGG-- AUG---G-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A U|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-CU-GG 1021 --GG-GAA-- GA-A------ ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-C-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CC- 1261 A-AG-AAG|U CAG---UGGU G-AAA-UA-C CG-CAG-C(- UC-A)A-CUG -CG-G-GGG- 1321 -UGCC-AUUG A-AAC-CAUU G-GACUU-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GG-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GA-GA-NGG -GG-G----- -N-------- 1681 -(AUA-GG)A C--------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------U --CUCUG--- -AC----GUU 1981 -CGU-G--(- GAAA-)-CAC -G-GAUU--- UC------AC GCGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CCCGUGU--- ----GA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CG--GUU- 2281 AG--UUGC-U AA-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|A 2701 G-CA-CU-C- U-AGC-CG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA N--GG-CGA- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-CU -AA-CCCU-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGGGG-C-A G-CC-GU-CG A-AGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.2 SYNTROPHOMONAS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.2 SYNTROPHOMONAS_ASSEMBLAGE. ORGANISM 2.16.2.2 SYNTROPHOMONAS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sns.bryant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophospora bryantii. ACCESSION No information KEYWORDS No information. SOURCE Syntrophospora bryantii. ORGANISM Syntrophospora bryantii. REFERENCE 1 AUTHORS Zhao,H., Yang,D., Woese,C.R. and Bryant,M.P. TITLE Assignment of Clostridium bryantii to Syntrophospora bryantii gen. nov., comb. nov. on the basis of a 16S rRNA sequence analysis of its crotonate-grown pure culture JOURNAL Int. J. Syst. Bacteriol. 40, 40-44 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26491 BASE COUNT 376 a 315 c 469 g 291 t 2925 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNUUNUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AU---AUUAG AUGAA----- ---------- ---------- ---------- 181 ---------- ---------- ---------G (--CU----- ---------- ---------- 241 --------UG -)C------- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAU UCUGAU---- AUU|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---NAC -GC-GUGGG- UAA--CCN-N C-CUGU---A -AGCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UGAUACC-GC 481 AU-AAG---- ---------- -------C-U UC-C------ ---UGA-(-- --------UU 541 AA-------- -)-UUG---- ---GG----A AG--UAAA-- ---GAUGGC- ---------- 601 --(------- CUCUUAACAA A--)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-NGA CGCA|-GCGA CGCN-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--NU-AG --)GG-UCGU AAA--GCUC| NGUU-UU-AA 1021 --GG-GAC-- GA-AGUC-CU --UCC-GG-( ----AGUAAU AUA------) -CUG-GA-AG 1081 ---------- -------G-G U-GA-CGGU- A-CCN-N-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC NNCGGNN-A) G-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GA-C CG-CAG-C(- CU-A)A-CUG -CG-N-NGU- 1321 -UGCA-CUUG A-AAC-UGGA U-AUCUU-GA GGG-----CA G-GA-GAGGU CAG-U|AGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAA-A UC-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNACUG-- ---------- ---------- ---------G 1501 ACU--GG-CC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CN--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUC C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AACG--- -AA----CCC 1981 -UUA-U--(- GAAA-)-GUA -G-GGNN--- UG-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC NACCC-UU-G |-CU--AUU- 2281 AG--UUGC-U AA-CAU---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCU --GU(-GA-C AA)-GCA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAGAG AGC-A-G-C- GA-GGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G ........N- NAUNN-NUN- NNN-NGG-CC UUGUA----C 3061 ACACNGCNC- GUC-ACA--- --CCA-CGAA A--GU-NGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-CC -NA-CC-A-- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------U GGNANG-C-A G-CC-GN-CG A-AGGU-GGG GUU-GG-UA- AUU-GGGG-U 3301 G---AA.... ......NAGG NANNN-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Snt.wolfei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophomonas wolfei. ACCESSION No information KEYWORDS No information. SOURCE Syntrophomonas wolfei. ORGANISM Syntrophomonas wolfei. REFERENCE 1 AUTHORS Zhao,H., Yang,D., Woese,C.R. and Bryant,M.P. TITLE Assignment of Clostridium bryantii to Syntrophospora bryantii gen. nov., comb. nov. on the basis of a 16S rRNA sequence analysis of its crotonate-grown pure culture JOURNAL Int. J. Syst. Bacteriol. 40, 40-44 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26492 BASE COUNT 367 a 306 c 435 g 284 t 2984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.G (--CU----- ---------- ---------- 241 --------U- -)CN-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- AGA|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCAU---A -AGCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAACACC-GC 481 AU-AAG---- ---------- -------C-U GU-A--C-AA ---UAC-(-- --------GC 541 AU-------- -)-GUU---A AG-UA----C AG--UAAA-- ---GAUGGC- ---------- 601 --(------- CUCUUAACAA A--)------ ---------| -GCUAU--C- A--CUU---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AGU-GG) -C-CUACN-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- AG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UGUU-GU-NA 1021 --GG-GAA-- GA-AGAA-CU --UAA-GUG( A----GAAUA -----U---) UGUU-UA-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-U-AC U-AG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) G-A-C-GGUN |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GN-A CG-CAG-C(- UC-N)A-CUG -CG-G-NGU- 1321 -UGCA-UUUG A-AAC-UGGG U-AUCUU-GA GGN-----CA G-GA-GAGGG CNG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAA-A UC-AGGAGG- AACA-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UACG--- -GA----UUU 1981 -CUA-U--(- GAAA-)-GUA -G-AAAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CGU-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--AUU- 2281 AG--UUGC-U AA-CAU---- ---------- ---------- ----(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|A 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCU --GU(-GA-C AA)-GCA-G- -GAGG-A-AG 2761 G-UA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-U-GG -UA-CAAGAG GGC-A-G-U- GA-AGC-C(G 2881 -UGA)GGUG- ---------- AA-GCGAA-U CUCAA-AAAG -CC-A-UUC- UCNGUUCGGA 2941 U-UGCAGUC- (UGCNAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGN-AC)-N UCN-CGGUG- AAUGC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UCA-C-UC -AA-CUC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GAGAGA-G-A G-CC-GU-CC A-AGGU-GGG GUU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tsy.liplyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermosyntropha lipolytica str. JW265. ACCESSION No information KEYWORDS No information. SOURCE Thermosyntropha lipolytica str. JW265. ORGANISM Thermosyntropha lipolytica. REFERENCE 1 AUTHORS Svetlitshnyl,V., Rainey,F. and Wiegel,J. TITLE Thermosyntropha lipolytica gen. nov., sp. nov., a lipolytic, anaerobic, alkalitolerant, thermophilic bacterium utilizing short- and long-chain fatty acids in syntrophic coculture with a methanogenic archaeum JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1131-1137 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X99980|g1666675 isolate_name= JW265 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 358 a 334 c 489 g 275 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..C|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAC- CAA--CCU-A C-CCAU---A -AGUU-G-GG 421 -GAU-GA-CA C--------- ------UG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-U UG-U--U-AU ---CUC-(-- --------GC 541 AU-------- -)-GGG---G GA-CA----C AG--UAAA-- ---GAUGGC- ----CU---- 601 --(------- ---AUAG--- ---)------ -----GG--| -GCUAU--C- G--CUU---- 661 ----AUGG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AA-C-CG| -A-CCU--(G -AGA)-GGGU ----GG-N-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CUCAAU-- GG-GG-(GAA A)-CCC-UGA CUCA|-GCGA CCCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAC-- GA-AGG--AC --ACG-CUG( C----GAAUA -----G---) UGGC-GU-GA 1081 ---------- -------G-G U-GA-CGGU- A-CCU-U-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GG-UG- 1261 A-AU-AAG|U CAG---GUGU G-AAA-GA-C CG-GAG-C(- UC-A)A-CUU -CG-G-GGU- 1321 -UGCA-UCUG A-UAC-UGUU C-AUCUU-GA GGG-----CA G-GA-GAGGG CAG-U|AGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAA-A UC-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGCCUG-- ---------- ---------- ---------G 1501 ACU--GU-CC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUN-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---AGCG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGG--- UG-------C CUGUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGCAGG---- ----AG---| CGC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--AUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCC --GU(-GA-C AA)-GCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-GU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG AGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-AAAG -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-CU -AA-CCGC-- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G CGGAGG-C-A A-CC-GC-CG A-AGGU-GGG GUC-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Abr.horiko 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaerobranca horikoshii str. JW/YL-138 DSM 9786 (T). ACCESSION No information KEYWORDS No information. SOURCE Anaerobranca horikoshii str. JW/YL-138 DSM 9786 (T). ORGANISM Anaerobranca horikoshii. REFERENCE 1 AUTHORS Engle,M., Li,Y., Woese,C. and Wiegel,J. TITLE Isolation and characterization of a novel alkalitolerant thermophile, Anaerobranca horikoshii gen. nov., sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 454-461 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9786 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U21809|g915309 geog_source= Old Faithful Hotel area, Yellowstone NP biol_source= hot springs isolate_name= JW/YL-138 NB: GB entry lists this as Clostridium sp. BASE COUNT 371 a 328 c 447 g 282 t 2948 others ORIGIN 1 .......... .......... .......... .NNUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CN--C ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GUAU AGGAAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUAGC CUAUAC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUA---C -AGAC-C-GG 421 -GAU-AC-CA U--------- ------CG-- G(-GAAA-)C -UGAU-G--U UAAUACC-GG 481 AU-ACN---- ---------- -------C-U UA-G--C-CU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A GG-CA----A AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUNN--- ---)------ ---------| -----N--C- G--CUG---- 661 ----UAGG-- AUG---G-|G CCUGC----- -GU|----UC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GGC-GA- CGA------- -----UG-GA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUUC| UGUU-AA-GA 1021 --GG-GAU-- GA-------- ---------( -----AGAAA ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-C-AA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGNNN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GU -G|-GU-UA- 1261 A-AU-AAG|U CAG---GUGU U-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CN-N-NAA- 1321 -UGCA-CUUG A-AAC-UGUA U-AACUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGN- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -UG-GU---- ---------- 1681 -(UUN-GA)U ---------- ---------- ---------- -------NCC -AUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUACC C|N|G-CCU- G-GGGNGUAC 1801 GAU-G---(G CAA)---C-A UU-GAAACUC -AAA-GGAAU UG-ACNGG-G -N-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGN -UUAAUU-CN -(NNNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---UCUG--- AAG----GCA 1981 -CUA----(- GAGA-)--UA -G-UGCNGU- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- G--------- ----GG---| CAG-AG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UA--CUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---NN ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AAG-UA-G A-CU-G-CCG --GC(-NA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -UGA)UCCG- ---------- GA-GCAAA-U CCCUA-AAAA -CA-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-N-CU -AA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.3 MOORELLA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.3 MOORELLA_GROUP. ORGANISM 2.16.2.3 MOORELLA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thaut4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoautotrophica str. JW 701/3 DSM 1974. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoautotrophica str. JW 701/3 DSM 1974. ORGANISM Moorella thermoautotrophica. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Organism information Culture collection: DSM 1974 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58353 Former RDP Sids: C.taut7013 DSM 1974 = ATCC 33924 (T) isolate_name= JW 701/3 NB: former name Clostridium thermoautotrophicum BASE COUNT 173 a 189 c 251 g 142 t 3621 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|A CCYNC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACH-A A|-GGC-GW- CNW------- -----UG-GG 781 N-AG-C-CG| -G-CCWU-(N -AGW)-GGGU ----NG-U-- HGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UNN -(NWCG)--G GWG-GCWWG- C-WN--GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--HH-CG --)GG-UUGU NAA--GCUC| UGUC-AUACA 1021 --GG-GAC-- GA-AG---UC --UUA-AAG( GC---GAAUN ----GC---) CNNN-NN-NG 1081 ---------- ---------- U-NACHGGU- W-CCU-N-AG G-AG--GAAG ---------C 1141 -CCNGGCU-N AC.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ......HG|U CAG---AUGU G-AAA-AA-N CG-G---C(- UU-W)A-C.. .......CA- 1321 -UNCA-UUUG A-AAC-UGC. .......... .......... .......... .....|.GAA 1381 UH-NHHGGU- GNA-GHD(-G UGAAW)-UGC -GU-AGHU-A NN-KKGAGG- AACK-NCAR- 1441 -U-G-GC(-G AA-G)GCGW- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--NG-CC CUNACG-CUG AG-G------ -------YN- C-GAAA-GN- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUWC)-CCU- ----NGUW-G UC----CNN- G-CC-GU--N 1621 AAY-G-AUGG G--UN-CU-- -------W|G -GU-GU-AGG -AG-N----- -U-------- 1681 -(AUC-GN)C N--------- ---------- ---------- --------CY -UUCUG-NGC 1741 CG--CA---- --GY-(AAA- ---C)R-CN- AUAA-NGUNN C|C|N-NGC- C-NGGGGNNG 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....G-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-H AG-CGG---- ---------- ---------- ---G(---UA ---WWG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CW-CU-C- WWWWW-GG-G A-CU-G-HHN --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-HN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--NNHAG GGG-U-G-C- NH-HGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thaut5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoautotrophica str. JW 701/5. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoautotrophica str. JW 701/5. ORGANISM Moorella thermoautotrophica. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58354 Former RDP Sids: C.taut7015 isolate_name= JW 701/5 NB: former name Clostridium thermoautotrophicum BASE COUNT 185 a 183 c 245 g 141 t 3622 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... A|-GGC-GA- CSA------- -----UG-GG 781 W-AG-C-CG| -G-CCW--(G -ANA)-GGGU ----GG-U-- MRR-C|M-MC -MCUGG-G-A 841 (MUGA-RA-C MCG)--GCCH -NGA-C-UCN -(WACG)--G GAG-GCCAG- C-AN--GU-G 901 GGG-AAUCUU G-CGCMAU-- GG-GC-(GAA A)-GCC-URA CGCM|-GCMA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G C-(--UU-CG --)GG-UUGU MAA--GCUC| UGUC-MWACM 1021 --GG-GAC-- GA-AG---UC --NNN-AAG( GN---GAAUA ----GC---) CNWU-NW-GG 1081 ---------- ---------- U-GA-CGGU- N-CCU-N-AG G-AG--GAA. .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... ...AA-AA-A NN-CRR-C(- UU-.)..... .......MA- 1321 -URCA-UUUG A-AAC-UGCM A-GGHUU... .......... .......... .....|.RRA 1381 UU-MCCGGU- GUA-MAG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-MCAR- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--RG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)N-CN- AUAA-NGUNN C|C|N-NGC- C-UGGGGAG. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .U-GG-URCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--WWU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-CA UAAAA-GG-G A-CU-G-CAR --RU(-GA-C HA)-ACC-G- -GAGG-A-AG 2761 G-HN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CHAAG GGG-U-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thauto 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoautotrophica str. JW 701/3 DSM 1974. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoautotrophica str. JW 701/3 DSM 1974. ORGANISM Moorella thermoautotrophica. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Kippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 1974 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77849|g572674 Former RDP Sids: C.tautotro DSM 1974 = ATCC 33924 (T) isolate_name= JW 701/3 NB: former name Clostridium thermoautotrophicum BASE COUNT 372 a 364 c 501 g 274 t 2865 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....GGC-G -UGC-CU--A ACAC-AUGCA A-GUCGUAGC 121 A--GU----C UU---UAAUU GG-GGAA--- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAA-C CGAUUA---- AAG|-AU--A GCGG-CCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---C -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------G-U CU-A--C-GG ---GAG-(-- --------GC 541 AU-------- -)-CUU---C UG-UA----G AA--GAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CGUAC--C- G--CUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AU-CA 1021 --GG-GAC-- GA-AG---UC --UUA-AAG( GC---GAAUA ----GC---) CUUU-AA-GG 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAAGGC -G|-GC-CU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AA-C CC-CGG-C(- UU-A)A-CCG -GG-G--CA- 1321 -UGCA-UUUG A-AAC-UGAA G-GGCUU-GA GGG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCNGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUN-NA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGG-GU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UN|N---G-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-N--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG GGG-U-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGNN N--NN-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CU -NA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thaut2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoautotrophica str. JW 701/3 DSM 1974. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoautotrophica str. JW 701/3 DSM 1974. ORGANISM Moorella thermoautotrophica. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 1974 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09168 Former RDP Sids: C.tauto3_2 DSM 1974 = ATCC 33924 (T) isolate_name= JW 701/3 NB: former name Clostridium thermoautotrophicum BASE COUNT 378 a 379 c 514 g 281 t 2824 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -AAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C UU---UAAUU GG-GGAA--- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAA-C CGAUUA---- AAG|-AU--- ACCG-CCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---C -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------G-U CU-A--C-GG ---GAG-(-- --------GC 541 AU-------- -)-CUU---C UG-UA----G AA--GAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- G--CUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CCCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AU-CA 1021 --GG-GAC-- GA-AG---UC --UUA-AAG( GC---GAAUA ----GC---) CUUU-AA-GG 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AA-C CC-CGG-C(- UU-A)A-CCG -GG-G-GCA- 1321 -UGCA-UUUG A-AAC-UGCC G-GGCUU-GA GGG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUGUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGG-GU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG GGG-U-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thaut3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoautotrophica.. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoautotrophica. ORGANISM Moorella thermoautotrophica. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09168 Former RDP Sids: C.tauto3_3 NB: former name Clostridium thermoautotrophicum BASE COUNT 378 a 379 c 515 g 281 t 2823 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -AAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C UU---UAAUU GG-GGAA--- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAA-C CGAUUA---- AAG|-AU--- ACCG-CCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---C -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------G-U CU-A--C-GG ---GAG-(-- --------GC 541 AU-------- -)-CUU---C UG-UA----G AA--GAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- G--CUG---- 661 ----AAGG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CCCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AU-CA 1021 --GG-GAC-- GA-AG---UC --UUA-AAG( GC---GAAUA ----GC---) CUUU-AA-GG 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AA-C CC-CGG-C(- UU-A)A-CCG -GG-G-GCA- 1321 -UGCA-UUUG A-AAC-UGCC G-GGCUU-GA GGG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUGUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGG-GU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG GGG-U-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thmace 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoacetica str. LJD (T). ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoacetica str. LJD (T). ORGANISM Moorella thermoacetica. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58352 Former RDP Sids: C.thermLJD isolate_name= LJD (T) NB: type strain = ATCC 35608; DSM 521 former name Clostridium thermoaceticum BASE COUNT 202 a 196 c 266 g 145 t 3567 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ....C----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GW- CDW------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AKW)-GGGU ----NG-U-- HGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AU-CA 1021 --GG-GAC-- GA-AGUC-UU --AAA-GGC( -----GAAUN ---------) GCCN-NN-NN 1081 ---------- -------N-G U-NACNGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCNGGCU-N AC.......( .......... .........) .......... |......... 1201 .......... .......... .......C|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AN-A CN-N---C(- UU-A)A-CC. .......CA- 1321 -UGCA-UUUG A-AAC-UGCH N-NHHHN-HN NHA-----GN G-AU-GAGNA GAN-N|GGAA 1381 UU-HHHGGU- GUA-KHD(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GCH GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-NGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GNNCC N|N|G-CNN- G-GGGNNG.. 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .........C AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-U AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CUG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-WD-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--NNAAG GGG-U-G-C- GW-WGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GH-GGA-(UC -AGC-AN)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrl.thmac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Moorella thermoacetica. ACCESSION No information KEYWORDS No information. SOURCE Moorella thermoacetica. ORGANISM Moorella thermoacetica. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59121 Former RDP Sids: C.thmaceti NB: former name Clostridium thermoaceticum BASE COUNT 380 a 372 c 504 g 282 t 2838 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -AAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C UU---UAAUU GG-GGAA--- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAA-C CGAUUA---- AAG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CCUU---C -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------G-U CU-A--C-GG ---GAG-(-- --------GC 541 AU-------- -)-CUU---C UG-UA----G AA--GAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- G--CUG---- 661 ----AAGN-- AUG---A-|G CCCNC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-AU-CA 1021 --GG-GAC-- GA-AGUC-UU --AAA-GGC( -----GAAUA ---------) GCCU-UU-AA 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AA-C CC-CGG-C(- UU-A)A-CCG -GG-N-NCA- 1321 -UGCA-UUUG A-AAC-UGCC G-GGCUU-GA GGG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGG-NU-UUG ACA-UC|--- ---------C ---UGCG--- -AA----CCU 1981 -GGU-G--(- GAAA-)-CAC -U-GGGN--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--UUU- 2281 AG--UUGC-U AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAAAG GGG-U-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAA-AAAG -CA-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CU -AA-CCC--- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-G-A G-CC-GU-CU A-AGGU-GGG GCU-GG-UG- AUU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.4 DICTYOGLOMUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.4 DICTYOGLOMUS_ASSEMBLAGE. ORGANISM 2.16.2.4 DICTYOGLOMUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR202 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Giovannoni,S.J., Rappe,M.S. and Adair,N. TITLE 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Chloroflexus/Herpetosiphon phylum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20797|g841256 BASE COUNT 344 a 364 c 484 g 258 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -CGC-UU--A AUGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GC-U GAGU---AAC -GC-GUGAG- U-AA-CAC-A C-CCUC---C -GGUG-G-GG 421 -UAU-AG-CC C--------- ------CG-- G(-GAAA-)C -CGAG-G--A UAAUCCC-GC 481 AU-ACG---- ---------- -------A-U CC----C--U U--CGC-(-- --------CU 541 UG-------- -)-GUG---G GG--G----G AU--GAAA-- ---GCU---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GG--C- G--CCG---- 661 ----GAGG-- AGC---G-|G CUCGC----- -GU|----CU U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-C-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUUUU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCCA|-GCGA CGUC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-AG --)GA-CUGU AAA--CCCC| UUUU-CC-GA 1021 --AG-GAA-- GA-G------ ---------( -----GAAG- ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CUU-C-GG G-AG--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUAC CC-GGAAUCA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GC-UG- 1261 G-AU-AAG|U CUC---UUGU G-AAA-GC-U CC-CGG-C(- UU-A)A-CUG -GG-A-GAG- 1321 -GCCA-AGGG A-UAC-UGUU C-GGCUC-GA GGG-----CA G-UA-GAGGA AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-GC CUGACG-CUG AG-G------ -------CG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CU- -GG(AUUA-G AUAC)-CCA- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-AU-AGG -GG-GUA--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -CCCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CU--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UG|--- ------UUUG --UGGUA--- GGA------- 1981 -ACC-C--(- GAAA-)-GGG -U-AACGA-- CC-------- CCGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCGG----- ----GG---| AGC-UU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-- ---------- ---------- ---------- ----(----A ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 -----CU-C- U-AGC-GA-G A-CA-G-CCU --CC(-CA-C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-GG -UA--CAAUG GGC-U-G-C- UA-AAG-C(G 2881 -CGA)GCUG- ---------- GA-GCCAA-U CCCAUCAAAG -CC-G-GCC- CCAGUUGGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAACG-CG -GAAU-CGC- -UAGUA-ACC 3001 GC-AGG-(UC -AGC-AC)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGA A--GC-CGA- GA-AC-AACU -GAA-G-UCG 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-C AGGC-GC-CG A--GGUCGGG CUU-GG-UG- ACU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGAAG)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SAR307 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SAR. ACCESSION No information KEYWORDS No information. SOURCE clone SAR. ORGANISM clone SAR. REFERENCE 1 AUTHORS Giovannoni,S.J., Rappe,M.S. and Adair,N. TITLE 16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Chloroflexus/Herpetosiphon phylum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20798|g841257 BASE COUNT 347 a 353 c 481 g 269 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GGU -GAAC-GC-- UGGC-GGC-G -CGC-UU--A AUGC-AUGCA A-GUC-GAAC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGUG-GCAG- 361 -A-CG-GC-U GAGU---AAC -GC-GUGAG- UAA--CAC-A C-CCUU---C -GGUG-G-GG 421 -UAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGAG-G--G UAAUCCC-GC 481 AU-ACG---- ---------- ---------- ---------- ---AUC-(-- --------CC 541 AG-------- -)-UGC---- ---------- ----CUUG-- ---GUGUUG- GGA-UG---- 601 --(------- ---AAAG--- ---)------ -----CC-U| -UCGGG--C- G--CCG---- 661 ----GAGG-- AGU---G-|G CUCGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAC ----GA-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-A 901 GGG-AAUUUU G-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCCA|-GCGA CGUC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UU(--CU-AG --)GA-CUGU AAA--CCCC| UUUU-CC-GA 1021 --GG-GAA-- GA-------- ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-C-GG G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUAC CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GU-UG- 1261 G-AU-AAG|U CUC---CUGU G-AAA-GC-U CC-CGG-C(- UC-A)A-CUG -GG-A-GAG- 1321 -GUCA-GGGG A-UAC-UAUU C-GACUC-GA GGG-----CU G-UA-GAGGU AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -C-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GCA--GU-GC CUGACG-CUG AG-G------ -------UG- C-GAGA-GC- GU-GGG-GA- 1561 GC-AAA-CU- -GG(AUUA-G AUAC)-CCA- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -AU-AU-AGG -GG-GUA--- ---------- 1681 -(-UC-GA)- ---------- ---------- -C-------- -------CCC -CCCUG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-U-GU-GGU -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|A-- ---------U ---UGUA--- GUA----GGA 1981 -ACC-C--(- GAAA-)-GGG -U-GACGA-- UC-------- CAGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- CUCUG----- ----GA---| AGC-UU-UCA |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UU---- ---------- ---------- ---------- ----(---AC ---AUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 -----CU-C- U-AAC-GA-G A-CA-G-CCU --CU(-CA-C AA)-GGA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-GG -UA--CAAUG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCCACCAAAG -CC-G-GCC- CCAGUUGGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAACG-UG -GAAU-CGC- -UAGUA-ACC 3001 GC-AGG-(UC -AGC-AC)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --UCA-UGGA A--GC-CGA- GA-AC-GAUU -GAA-G-UCG 3121 C-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-GC-GC-CG A-GGUC-GGG UUU-GG-UG- ACU-GGGA-C 3301 G---AAGUC- GUAA-CAAGG UAGCU-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD43 4376 bp RNA RNA 02-JUL-1998 DEFINITION unidentified soil. ACCESSION No information KEYWORDS No information. SOURCE unidentified soil. ORGANISM unidentified soil. REFERENCE 1 AUTHORS Ueda,T. TITLE Genetic diversity in soil bacteria JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26230|g498433 library_source= unidentified soil bacterium from paddy field BASE COUNT 61 a 64 c 78 g 59 t 4114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UCGC-U GU-GU----- ---------- ---------- ----(---GU ---U----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------AC|A 2701 A-GU-GU-C- A-CAC-GG-G A-CU-G-CCG --GU(-CU-U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGG-U-AA -CA--CAAUA GGU-U-G-C- GA-AG--C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUGA-AA-G -UU-G-CCC- UCAGUUCAGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUGCU -UGAAGA-CG -GAGU-UGC- -UAGUA-ACC 3001 GC-AGU-(CA -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dgl.thmop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dictyoglomus thermophilum str. Rt46B.1. ACCESSION No information KEYWORDS No information. SOURCE Dictyoglomus thermophilum str. Rt46B.1. ORGANISM Dictyoglomus thermophilum. REFERENCE 1 AUTHORS Gibbs,M.D., Reeves,R.A. and Bergquist,P.L. TITLE Cloning, sequencing and expression of a xylanase gene from the extreme thermophile Dictyoglomus thermophilum sp. Rt46B .1. Activity of the enzyme on fibre-bound substrate JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39875|g973981 isolate_name= Rt46B.1 BASE COUNT 359 a 374 c 513 g 262 t 2868 others ORIGIN 1 .......... .......... .......... ........CA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGGC-AUGCA A-GUC-GAGC 121 G--GU-A--G C--------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CCUAUUG-GU (--UU----- ---------- ---------- 241 --------AU -)GC-CGAUA GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GU|-GA--G AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CCCA---G -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAACCC-CC 481 AU-AUA---- ---------- -------C-U UA-C--C--G ---AGC-(-- --------GA 541 UA-U------ -)-GCU---C AG-GU----A AG-GAAAG-- ---AGUAU-A GAGGG----- 601 --(------- ---GUAA--- ---)------ ----CCCUC| U-AUGC--U- G--CUC---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 GGG-AAUCUU C-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUU-CU-CG 1021 --GG-GAA-- GA-------- ---------( -----AUAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 A-GC-AAG|U CAG---AUGU G-GAA-GC-C CU-GAG-C(- UC-A)A-CUC -AG-G-GAG- 1321 -GUCA-UCUG A-UAC-UGCU A-AGCUA-GA GGG-----CA G-GA-GAGGA GAG-C|GGAA 1381 CU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------ACU -CUCCG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-C-GU-GGU -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGCU-GU AAG----CUC 1981 -ACU-C--(- GAAA-)-GGG -U-GAGUG-- CC----AAAU AGGGG-G--- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- CCCCUAUUU- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-A GA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG UAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGAG GGG-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCU--AAAG -CC-ACCCC- C-AGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-ACC 3001 GC-AGA-(UC -AGCCAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CCA- CA-AC-ACCC -GAA-G-UCA 3121 G--------- ----GC---- ---------- ---------- -----(---- -GAAGA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GC------- --CU-GC-CG A-AGGU-GGG GCG-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dgl.spRt46 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dictyoglomus sp. str. Rt46-B1. ACCESSION No information KEYWORDS No information. SOURCE Dictyoglomus sp. str. Rt46-B1. ORGANISM Dictyoglomus sp. REFERENCE 1 AUTHORS Love,C.A., Patel,B.K.C., Stackebrandt,E. and Ludwig,W. TITLE The phylogenetic position of Dictyoglomus based on 16S rRNA sequence analysis JOURNAL FEMS Microbiol. Lett. 107, 317-320 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z14090|g5546 isolate_name= Rt46-B1 BASE COUNT 320 a 347 c 459 g 237 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC GGAACGGC-- UGGC-GGC-G -UGC-CU--A AGGC-AUGCA A-GUC-GAGC 121 G--GU-A--G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CCUAUUG-GU (--UU----- ---------- ---------- 241 --------AU -)GC-CGAUA GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GU|-GA--G AGCG-GUGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CCUA---G -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAACCC-CC 481 AU-AUA---- ---------- -------C-U UA-C--C--G ---AGC-(-- --------GA 541 UA-U------ -)-GCU---C AG-GU----A AG-GAAAG-- ---AGUAU-A GAGG------ 601 --(------- ---GUAC--- ---)------ -----CCUC| U-AUGC--U- G--CUC---- 661 ----UGGG-- AUG---G.|. ..UGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 GGG-AAUCUU C-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUU-CU-CG 1021 --GG-GAA-- GA-------- ---------( -----AUAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 A-GC-AAG|U CAG---AUGU G-GAA-GC-C CU......(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......GGA GAG-C|GGAA 1381 CU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- A--A-CCCG- 1441 -G-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU--GG -GG-AG---- -U-------- 1681 -(UAG-AC)U ---------- ---------- ---------- -------CUC -CGUGC-UGC 1741 AG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUNCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G -AA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-C-GU-GGU -AAUUUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGCU-GU AAG----CUC 1981 -ACU-C--(- GAAA-)-GGG -U-GAGUG-- CC----AAAU AGGGG----- --(GG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU U-)------- CCCCUAUUU- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUN-- UCG-UCA|-G C-U---C--U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UU-C-C AG-CGG---- ---------- ---------- ----(---GA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-A GA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG UAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGAG GGG-A-G-C- GA-AGC-C(G 2881 -CGA)GGGC- ---------- AG-GC-AA-U CCCU--AAAG -CC-ACCCC- CCAGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- G)-CCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-ACC 3001 GC-AGA-(UC -AGCCAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CCG- CA-AC-NCCC -GAA...... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dgl.thmoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dictyoglomus thermophilum str. H-6-12 DSM 3960 (T). ACCESSION No information KEYWORDS No information. SOURCE Dictyoglomus thermophilum str. H-6-12 DSM 3960 (T). ORGANISM Dictyoglomus thermophilum. REFERENCE 1 AUTHORS Love,C.A., Patel,B.K.C., Stackebrandt,E. and Ludwig,W. TITLE sequence analysis The phylogenetic position of Dictyoglomus based on 16S rRNA JOURNAL FEMS Microbiol. Lett. 107, 317-320 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 3960 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69194|g296903 DSM 3960 (T) = ATCC 35947 isolate_name= H-6-12 NB: GB entry indicates this as Eukaryota BASE COUNT 361 a 383 c 524 g 270 t 2838 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGGC-AUGCA A-GUC-GAGC 121 G--GU-A--G C--------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CCUAUUG-GU (--UU----- ---------- ---------- 241 --------AU -)GC-CGAUA GGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -GU|-GA--G AGCG-GCGC- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CCCA---G -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAACCC-CC 481 AU-AUA---- ---------- -------C-U UA-C--C--G ---AGC-(-- --------GA 541 UA-U------ -)-GCU---C AG-GU----A AG-GAAAG-- ---AGUAU-A GAGGG----- 601 --(------- ---GUAA--- ---)------ ----CCCUC| U-AUGC--U- G--CUC---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-C 901 GGG-AAUCUU C-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUU-CU-CG 1021 --GG-GAA-- GA-------- ---------( -----AUAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GC-UU- 1261 A-GC-AAG|U CAG---AUGU G-GAA-GC-C CU-GAG-C(- UC-A)A-CUC -AG-G-GAG- 1321 -GUCA-UCUG A-UAC-UGCU A-AGCUA-GA GGG-----CA G-GA-GAGGA GAG-C|GGAA 1381 CU-UCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGAAGG- AACG-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG G--CA-CU-- -------A|G -GU-GU-GGG -GA-GU---- ---------- 1681 -(-UA-G-)- ---------- ---------- ---------- -------ACU -CUCCG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GUGCC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC G-C-GU-GGU -UUAAUU-CG -(AUGCUA-A G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGCU-GU AAG----CUC 1981 -ACU-C--(- GAAA-)-GGG -U-GAGUG-- CC----AAAU AGGGG----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- CCCCUAUUU- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --GC(-GA-A GA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG UAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGG-U-GG -UA--CAGAG GGG-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCU--AAAG -CC-ACCCC- C-AGUUCAGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGG-CG -GAAU-CGC- -UAGUA-ACC 3001 GC-AGA-(UC -AGCCAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CCG- CA-AC-ACCC -GAA-G-UCA 3121 G--------- ----GC---- ---------- ---------- -----(---- -GAAGA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GC------- --CU-GC-CG A-AGGU-GGG GCG-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Am.degensi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ammonifex degensii str. KC4 DSM 10501. ACCESSION No information KEYWORDS No information. SOURCE Ammonifex degensii str. KC4 DSM 10501. ORGANISM Ammonifex degensii. REFERENCE 1 AUTHORS Huber,R., Rossnagel,P., Woese,C.R., Rachel,R., Langworthy,T .A. and Stetter,K.O. TITLE Formation of ammonium from nitrate during chemolithoautotrophic growth of the extremely thermophilic bacterium Ammonifex degensii gen. nov. sp. nov. JOURNAL Syst. Appl. Microbiol. 19, 40-49 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10501 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34975|g1016236 isolate_name= KC4 BASE COUNT 320 a 378 c 488 g 233 t 2957 others ORIGIN 1 .......... .......... .......... .......... AGGGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GG (--CU----- ---------- ---------- 241 --------UG -)UC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------A GGGCCN---- ---|------ NGUNUCCUG- 361 -A-CN-GG-U GAGU---AAN -NC-GUGGU- UAA--NNN-N C-CNAG---G -ANAU-Y-GG 421 -CAU-AA-CC C--------- ------UG-- G(-GAAA-)Y -UAGG-R--C UAAUACC-GG 481 AU-ACU---- ---------- -------C-A CC-U--G-CU ---ANG-(-- --------NC 541 AU-------- -)-CCU---A AU-AG----G AG--GAAA-- ---GGUGGA- ---------- 601 --(------- -CGUNNAA-- ---)------ ---------| -NNUGC--N- A--CUC---- 661 ----CUNN-- AUG---G-|G CCCGC----- -GU|----CC C--AUNA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----AG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-NU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--CCCC| NGUC-GU-GG 1021 --GG-GAC-- GA-NGC--UC N-AGG-GGG( U----GAAUA -----G---) CCUC-CU-GG 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUN( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UC- 1261 C-AG-AAG|U CGU---GGGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCU -AG-G-GNC- 1321 -UNCC-CNCG A-AAC-CAUG G-GGCUU-GA GGG-----CA G-GA-GAGGG NNG-U|GGNA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCCCUN-- ---------- ---------- ---------G 1501 UCU--GU-CC CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- NG-GGG-GA- 1561 GC-AAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG G--CG-CU-- -------A|G -GU-AU-GGG -GG-AG---- ---------- 1681 -(UGU-NN)N ---------- ---------- ---------- -------CUC -CUCCG-UGC 1741 CG--UA---- --GG-(UAA- ---C)C-CA- UUAA-GCGCC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CNA)---N-A CU-NAAACUC -AAA-GGAAU UG-NCGNN-N -N-N-CC--G 1861 C-A--CA-AG CGGUGN-NNC A-N-NU-NGU -UUAAUU-NG -(AUGNUA-A G)--CGAAGA 1921 A-CCUUA-CC ARR-GC-UUC ACAYNC|--- ---------G ---GGYG--- NAG----AUA 1981 -CCC-G--(- GAAA-)-CGG -GNAGCGAG- CCCCGG---- ---GG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NA G-)------- CC------G- CCGGGG---| AGC-CA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CCU- 2281 AG--UUGC-C AA-CGG---- ---------- ---------- ---G(---UG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GG-N A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUGAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GCG--CUACA AUGGC-C-GG -UA--CAGCG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCAAA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-CGG-(UC -AGC-AU)-A CGG-CGGUG- AAUAC-GUU- CNC-GGG-NN UUGUA----C 3061 ACACNNCNN- GUA-NNA--- --CCA-CGGA A--GC-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UAC-U-CC UNA-CCCUC- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------GA GGGAGG-G-A G-CC-AC-CG A-AGGU-GCG GCC-GG-UN- ACNA...... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ttr.ferred 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoterrabacterium ferrireducens.. ACCESSION No information KEYWORDS No information. SOURCE Thermoterrabacterium ferrireducens. ORGANISM Thermoterrabacterium ferrireducens. REFERENCE 1 AUTHORS Slobodkin,A., Reysenbach,A.L., Strutz,N., Dreier,M. and Wiegel,J. TITLE Thermoterrabacterium ferrireducens gen. nov., sp. nov., a thermophilic anaerobic dissimilatory Fe(III)-reducing bacterium from a continental hot spring JOURNAL Int. J. Syst. Bacteriol. 47 (2), 541-547 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U76363|g1813617 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 355 a 356 c 521 g 271 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .UCUCG-GAC -GCAC-UG-- UGGG-GGU-G -CGC-AA--A ACAC-AUACA U-GUA-GCGG 121 G--GU----- -----CCU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GGAGGUU-GG (--UU----- ---------- ---------- 241 --------UC -)CC-AACUU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UCG---- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UGA--CCU-A C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CC C--------- ------UG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U AU-C--G-G- ---GUU-(-- --------UA 541 GA-------- -)-GAC---- CU-GA----U AG--GAAA-- ---GGUGGC- UGA-GG-CGG 601 --(------- --GAGCAUG- ---)------ -CUA-CC--| -GCUAC--C- G--CUU---- 661 ----ACAG-- AUG---GU|G CCCGU----- -CG|----UC U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCG -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-UGUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCU| GUCU-UU-CC 1021 --GG-GAC-- GA--AG--UU --UAU-UCA( UUC--GAAUA ---GGG---) UGAG-UG-GA 1081 ---------- ---------- U-GA-CGGU- A-CUG-G-AG -GAG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GU-CU- 1261 G-GU-AAG|U CAG---GUGU A-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -AGCA-CCUG A-UAC-UGCU G-GACUU-GA GGG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-AC CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-GGG -GC-C----- ---------- 1681 -(-GG-AA)A ---------- ---------- ---------- --------GG -UUCCG-UGC 1741 CG--GA---- --GG-(UAA- ---C)C-CA- AUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|-C- ---------G ---CGGA--- --A----CCU 1981 -GGU-G--(- GAAA-)-CAC -C-GGGG--- UG-------C CUGCC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUAGG---- -----A---| ACC-GCGAGA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CC--CUU- 2281 AG--UUGC-C AU-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --UC(-GA-U AA)-GAU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-GC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGA-A-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCAAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GC-CGG- UA-AC-ACCC -GAA-G-UCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- CGGAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GC-CG A-AGGU-GGG ACC-GG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.5 TBM.THERMOSULFURIGENES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.5 TBM.THERMOSULFURIGENES_GROUP. ORGANISM 2.16.2.5 TBM.THERMOSULFURIGENES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.xylano 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium xylanolyticum str. LX-II DSM 7097 (T). ORGANISM Thermoanaerobacterium xylanolyticum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 7097 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09172 DSM 7097 (T) = ATCC 49914 isolate_name= LX-II BASE COUNT 433 a 359 c 493 g 287 t 2804 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----C CG---GCACU CAACU-AA-G CG-CUUAC-- ---------- ---------- 181 ---------- ---------- ---------- (--AGNUUUN UNAGACAGCN AAGAGAGNAG 241 UAAGCAGUUU -)-------- ---------- ---------- ---------- ------NNAG 301 AGAGAAAUAA GA-GUAAA-C GC-GG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-UA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U GC-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGN-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UUCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CNCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GU-A-)- ---------- ---------- ---------- --------UA -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCC 1981 -GGU-A--(- GAAA-)-UAC -C-GGAG--- UG-------- -CCUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-CCAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.thsul2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium thermosulfurigenes str. 4B (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium thermosulfurigenes str. 4B (T). ORGANISM Thermoanaerobacterium thermosulfurigenes. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58351 Former RDP Sids: C.thsulf4B isolate_name= 4B (T) NB: former name Clostridium thermosulfurogenes BASE COUNT 247 a 195 c 254 g 159 t 3521 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ...U---AAC --C-URRA-- CA---UCU-A C-CCU----- --GUA-G-AC 421 -UGG-AU-AA C--------- ------AC-- C(-GAAA-)G -G-GH-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-UA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U GC-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----HAGG-- AUG---A-|G UCMRC----- -GU|----CC C--AUWA-G- CUA-G---UU 721 GG-CR-GG-( GW-AAA-AR) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 H-AG-C-CG| -G-CCW--(G -AGA)-GGGH ----NA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCN -(NACG)--G GAG-GC-AR- C-A---NU-G 901 GGG-AAUAUU G-URCNNU-- GG-GG-(GMA A)-CCC-UGA CANA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUN| NAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GW-CGGU- N-CCA-U-NN N-GN--NNNG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .CA-CGU-AR -C|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-A CC-URR-C(- UC-A)A-CNA -GG-G-UAU- 1321 --RMA-UCUN A-AAC-UNAA U-AGCUU-GA GWC------N N-NG-AGAGG AGA-C|GGAA 1381 UU-CCUGGU- RUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGRAAG- AAUM-CMAG- 1441 -U-G-GC(-G AA-A)GCVV- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GU-AN)- ---------- ---------- ---------- --------UN -AUC-G-UGC 1741 CG--GH---- --NU-(UMM- ---C)G-CH- AUHH-GUA.. .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .ACCC-CU-R |-UU--GGU- 2281 AG--UUAC-C AG-CG----- ---------- ---------- ---U(---AA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------MG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAA-G- -GAAGGA-AG 2761 G-MR-RRR-A UR-ACR--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CARAG GGC-A-N-H- GA-AGG-A(G 2881 -CGA)WCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUNC-GUU- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.thsulf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium thermosulfurigenes str. 4B ATCC 33743 (T). ORGANISM Thermoanaerobacterium thermosulfurigenes. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33743 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09171 ATCC 33743 (T) = DSM 2229 isolate_name= 4B NB: ATCC lists previous name as Clostridium thermosulfurigenes (DSM 2229) strain sequenced is held at the collection of H.W.Morgan, Hamilton, NZ BASE COUNT 443 a 357 c 495 g 277 t 2804 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----C CG---GCACU CAACU-AA-G CG-CUUAC-- ---------- ---------- 181 ---------- ---------- ---------- (--AGAUUAA AGACAGCAAA GAGUAAAGAA 241 AGCAGAANAA -)-------- ---------- ---------- ---------- ---------G 301 AGAGAAAUAA GA-GUAAA-C GC-GG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-UA ---AUG-(-- --------GC 541 AU-------- -)-CAU---U GC-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GU-A-)- ---------- ---------- ---------- --------UA -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCC 1981 -GGU-A--(- GAAA-)-UAC -C-GGAG--- UG-------- -CCUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tam.lethyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobium "lactoethylicum" str. ZE-1 DSM 9003. ORGANISM Thermoanaerobium "lactoethylicum". REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 9003 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09170 isolate_name= ZE-1 BASE COUNT 445 a 354 c 492 g 277 t 2808 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----C CG---GCACU CAACU-AA-G CG-CUUAC-- ---------- ---------- 181 ---------- ---------- ---------- (--AGAAAAA AGACAGAAAA GAAAGAUAAA 241 -GCAAAAA-- -)-------- ---------- ---------- ---------- ---------G 301 AGAGAAAAAU GA-GUAAA-C GC-GG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--N-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C UC-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UGCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGAAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CN- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GU-A-)- ---------- ---------- ---------- --------UC -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCU 1981 -GGU-A--(- GAAA-)-UAC -U-AGAG--- UG-------- -CCUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CUA)GCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.saccha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium saccharolyticum str. B6A-RI. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium saccharolyticum str. B6A-RI. ORGANISM Thermoanaerobacterium saccharolyticum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09169 DSM 7060 (T) = ATCC 49915 isolate_name= B6A-RI; B6A BASE COUNT 426 a 354 c 489 g 280 t 2827 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----C CG---GNACU CAAUU-AA-G CG-CUUAC-- ---------- ---------- 181 ---------- ---------- ---------- (--AGAAAAA -GA------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------G 301 AGAGAAAN-U GA-GUAAA-C GC-AA-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGUU-U-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-AA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGN-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UUCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UG- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUG- 1321 -UGCA-UCUG A-AAC-UAAA C-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UG-A----- ---------- 1681 -(-AG-CA)- ---------- ---------- ---------- --------UC -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCA 1981 -GGU-A--(- GAAA-)-UAC -C-AGAG--- UG-------- -CCUC----- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-G AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|CCU~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thamylol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermoamylolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermoamylolyticum. ORGANISM Clostridium thermoamylolyticum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76743|g572671 BASE COUNT 402 a 331 c 463 g 262 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ......U--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----G GG---A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AC (--UA----- ---------- ---------- 241 --------CG -)GU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AAC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---U UC-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G -CCGU----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA--G) -C-CCACC-A A|-GAC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UGCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- GCG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------UA -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCU 1981 -GGU-A--(- G-AA-)-UAC -C-GGAG--- UG-------- -CCUC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCC --GU(GGA-A AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 ----AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.aotear 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium aotearoense str. JW/SL-NZ613 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium aotearoense str. JW/SL-NZ613 (T). ORGANISM Thermoanaerobacterium aotearoense. REFERENCE 1 AUTHORS Liu,S.Y., Rainey,F.A., Morgan,H.W., Mayer,F. and Wiegel,J. TITLE Thermoanaerobacterium aotearoense sp. nov., a slightly acidophilic, anaerobic thermophile isolated from various hot springs in New Zealand and emendation of the genus Thermoanaerobacterium JOURNAL Int. J. Syst. Bacteriol. 46, 388-396 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93359|g1314196 isolate_name= JW/SL-NZ613 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 404 a 338 c 472 g 264 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----G GG---A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AC (--UA----- ---------- ---------- 241 --------CG -)GU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- CUU|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-C-GG 421 -GAU-AA-CA C--------- ------UC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CA-A--G-AA ---GCG-(-- --------GC 541 AU-------- -)-CGC---U UU-UU----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UUCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UG-A----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------UC -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACAG--- -AA----UCA 1981 -GGU-A--(- GAAA-)-UAC -C-UGAG--- UG-------- CCUUC----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- U-)------- GAAGG----- ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGU-GGG GUA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tbm.thsacc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacterium thermosaccharolyticum. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacterium thermosaccharolyticum. ORGANISM Thermoanaerobacterium thermosaccharolyticum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59119 Former RDP Sids: C.thmsacch Tab.thsacc ATCC 7956 (T) = NCA 3814 = DSM 571 = NCIMB 9385 NB: former name Clostridium -> Thermoanaerobacter thermosaccharolyticum BASE COUNT 408 a 332 c 459 g 266 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NAURAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----G GG---A---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AC (--UA----- ---------- ---------- 241 --------CG -)GU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AAC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--UCU-A C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -AGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-U CG-A--G-AA ---GCG-(-- --------GC 541 AU-------- -)-CGC---U UU-UC----G AA--GAAA-- ---GGA---- ---------- 601 --(------- ---GAGAA-- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAGG-- AGG---A-|G UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UGAGG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-UGCAAU-- GG-GG-(GAA A)-CCC-UGA CACA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-AU 1021 --GG-GAA-- GA-AA----- ---------( ------GAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGC- ACG-UAG-GC -G|-GC-UA- 1261 U-AA-AAG|U CAG---AUGU G-AAA-AA-C CU-GGG-C(- UC-A)A-CCG -AG-G-GUA- 1321 -UGCA-UCUG A-AAC-UAAA U-AGCUU-GA GUC-----AA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--UG-AA CUGACG-CUG AG-G------ -------UG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -UU-A----- ---------- 1681 -(-GU-A-)- ---------- ---------- ---------- --------UA -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-NUG ACA-UC|--- ---------C ---ACAG--- -AA----UCG 1981 -AGU-A--(- GAAA-)-UAC -U-UGAG--- UG-------- -CCUC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GAGG------ ----AG---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GGU- 2281 AG--UUAC-C AG-CGU---- ---------- ---------- ----(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-GA-CU-C- U-ACC-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -AA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCGAA-U CCCAG-AAAA -CA-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A N-CU-GC-CG A-AGGU-GGG GUA-AA-UG- ANN-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|CCU~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.6 TAB.KIVUI_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.6 TAB.KIVUI_ISOLATE. ORGANISM 2.16.2.6 TAB.KIVUI_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.kivui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter kivui. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter kivui. ORGANISM Thermoanaerobacter kivui. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09160 Former RDP Sids: Acg.kiviu DSM 2030 (T) = ATCC 33488 NB: former name Acetogenium kivui BASE COUNT 422 a 386 c 566 g 288 t 2714 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG--GCCACU CAACU-AAGU GCUUACUU-A AGGGGA---- ---------- 181 ---------- ---------- ---------- (--AGAAGUA UAGGAGAAGA AGAAAGAAAU 241 AAAAGUGGA- -)-------- ---------- ---------- ---------- ---------- 301 ----CCAAAG UA-AGGUAAG CACGG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---C -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------G-U CA-U--A-AG ---GUG-(-- --------GC 541 AU-------- -)-CAC---C UU-AU----G AA--GAAA-- ---GGGG--- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| ---ACC--C- G--CUG---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CUCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-GGU- 1321 -AGCA-CUUG A-AAC-UGGG U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------U CA-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- GG-UGA---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AUC-C(G 2881 -CGA)GGUG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-GCG 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG GCAUGUUA-- -----(---- -GGAAAGGUA 3181 GGAAGAGGAA G--------- ------AA-- -------)-- ---------U GAUGUGUCCA 3241 CUUGAGUGCC GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.7 TAB.ETHANOLICUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.7 TAB.ETHANOLICUS_GROUP. ORGANISM 2.16.2.7 TAB.ETHANOLICUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.aceeth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermobacteroides acetoethylicus str. HTB2/W ATCC 33265 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermobacteroides acetoethylicus str. HTB2/W ATCC 33265 (T). ORGANISM Thermobacteroides acetoethylicus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33265 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09163 isolate_name= HTB2/W NB: strain sequenced is held at the collection of H.W.Morgan , Hamilton, NZ former name Thermobacteroides acetoethylicus BASE COUNT 440 a 407 c 589 g 304 t 2636 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --UCAGAGGU CGGAAAU-CG (--AC----- ---------- ---------- 241 -------UUC -)CG-ACUUC CGACCUCUGG ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-GG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------GG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC--CGGCAC UCAAC----- --(---GAAG 2041 UGCUUACCGU AGAGAAGAAG UAGGUAGGGA GUAAAUGCAG GAAGGAAGAG UUAAGAGGUA 2101 GGCGCUUG-- --)------- GUUGAGUGCC G---GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-G(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--UCU- 2281 AG--AUGC-C AU-UCCGUCA CUCAACUGAA CAUGUUAGGC AAGA(---GU ---AGA--)G 2341 AGGAAGGGA- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ----UAUAAU GUUCAGUUGA GUGACGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G--CC 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG ACAUGGGAUU AUA--(---- -GGGAAGAAA 3181 GAAGA----- ---------- ---------- -------)-- ----UAUAAU AUCGUGUCCA 3241 CUUGAGUGCC GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.aceet3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermobacteroides acetoethylicus str. HTB2/W ATCC 33265 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermobacteroides acetoethylicus str. HTB2/W ATCC 33265 (T). ORGANISM Thermobacteroides acetoethylicus. REFERENCE 1 AUTHORS Rainey,F. and Stackebrandt,E. TITLE Phylogenetic analysis of the bacterial genus Thermobacteroides indicates an ancient origin of Thermobacteroides proteolyticus JOURNAL Lett. Appl. Microbiol. 16, 282-286 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33265 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69336|g534978 Ref 1: incorrectly listed in Rainey & Stackebrandt as ATCC 35442 isolate_name= HTB2/W BASE COUNT 440 a 407 c 589 g 304 t 2636 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --UCAGAGGU CGGAAAU-CG (--AC----- ---------- ---------- 241 -------UUC -)CG-ACUUC CGACCUCUGG ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-GG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------GG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC--CGGCAC UCAAC----- --(---GAAG 2041 UGCUUACCGU AGAGAAGAAG UAGGUAGGGA GUAAAUGCAG GAAGGAAGAG UUAAGAGGUA 2101 GGCGCUUG-- --)------- GUUGAGUGCC G---GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-G(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--UCU- 2281 AG--AUGC-C AU-UCCGUCA CUCAACUGAA CAUGUUAGGC AAGA(---GU ---AGA--)G 2341 AGGAAGGGA- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ----UAUAAU GUUCAGUUGA GUGACGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G--CC 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG ACAUGGGAUU AUA--(---- -GGGAAGAAA 3181 GAAGA----- ---------- ---------- -------)-- ----UAUAAU AUCGUGUCCA 3241 CUUGAGUGCC GGGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.ethano 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter ethanolicus str. JW200 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter ethanolicus str. JW200 (T). ORGANISM Thermoanaerobacter ethanolicus. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58347 Former RDP Sids: Tam.ethano isolate_name= JW200 (T) BASE COUNT 146 a 151 c 215 g 101 t 3763 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... ......G-GG 781 U-AG-C-CA| -G-GCNNN(R -RRA)-GGGU ----RG-U-- MRR-M|H-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -HGA-C-UCM -(NNNG)--G GAG-GC-AR- C-A---NU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-URA CGCA|-GCGA CGCC-GC-GU 961 G-N-NN-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AMN--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GN-CGGU- N-CCN-C-NC ---G--NNNG ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... ..G-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGAGC-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUNNC C|C|G-CCU- G-GGGAGUNC 1801 GGC-C---(G CNN)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG GGA-G-G-C- GA-AGC--(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCG-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.ethan1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter ethanolicus str. JW200 (T) ATCC 31550. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter ethanolicus str. JW200 (T) ATCC 31550. ORGANISM Thermoanaerobacter ethanolicus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 31550 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09162 ATCC 31550 = DSM 2246 isolate_name= JW200 (T) BASE COUNT 440 a 409 c 583 g 302 t 2642 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --UCAGAGNC CGGAAAU-CG (--AC----- ---------- ---------- 241 -------UUC -)CG-ACNUC CGACCUCUGG ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-GG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CUCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGA- 1321 -UGCA-CAUG A-AAC-UGGG U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-UCGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC--CGGCAC UCAAC----- --(---GAAG 2041 UGCUUACCGU AGAGAAGAAG UAGGUAGGGA GUAAAUGCAG GAAGGAAGAG UUAAGAGGUA 2101 GGCGCUUG-- --)------- GUUGAGUGCC G---GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--UCU- 2281 AG--AUGC-C AU-UCCGUCA CUCAACUGAA CAUGUUAGGC AAGA(---GU ---AGA--)G 2341 AGGAAGGGA- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ----UAUAAU NUUCAGUUGA GUGACGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-GCG 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG ACAUGGNAUU AUA--(---- -GGGAAGAAA 3181 GAAGA----- ---------- ---------- -------)-- ----UAUNAU A-CGUAUCCA 3241 CUUGAGUGCC GGGAGG-G-A G-CC-GN-CG A-AGGU-GGG GCA-GA-UG- AUU-GGCG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spAZ3_B1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sp. str. AZ3 B.1. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sp. str. AZ3 B.1. ORGANISM Clostridium sp. REFERENCE 1 AUTHORS Saul,D.J., Williams,L.C., Reeves,R.A. and Bergquist,P.L. TITLE Secondary structure model for an unusual SSU rRNA from the extremely thermophilic bacterium strain AZ3 B.1 JOURNAL Biochim. Biophys. Acta 1217, 211-213 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23477 isolate_name= AZ3 B.1 BASE COUNT 459 a 406 c 607 g 307 t 2597 others ORIGIN 1 .......... .......... .......... ...UUGUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---GCACU CAACU-AAGU GCUUACUU-A AGGGGAA--- ---------- 181 ---------- ---------- ---------- (--GGAAGUA UAGUAGAAGA AGAAGGUAAU 241 AAAAGUGAA- -)-------- ---------- ---------- ---------- ---------- 301 ----GCAAAG UA-AGGUAAG CACGG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGC-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-AG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA C--A|-GCGA CGCU-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGA- 1321 -UGCA-CAUG A-AAC-UGGG U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CCCGGCACUC AAGUG----- --(------- 2041 ---------- ---GGCAUGA UAGAGAAGGU AGUAAGAGGG AGAAUGAAGU GC-------- 2101 ---------- --)------- CUACUUGAGU GCCGGG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--UCU- 2281 AG--UUGC-C AG-UCCGUCA CUCACCUGAA CAUGUUAGGA AAGA(---GU ---AGA--)G 2341 AGGAAGGGA- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ----UAGCGU GUUCAGUUGA GUGACGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG GCAUGUU--- -----(---- -AGAAACGUG 3181 AUGAAGAGAA A--------- ------AA-- -------)-- ---------- AACGUGCCCA 3241 CUUGAGUGCC GGGGGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.thsul2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter thermohydrosulfuricus str. E100-69 ATCC 35045. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter thermohydrosulfuricus str. E100-69 ATCC 35045. ORGANISM Thermoanaerobacter thermohydrosulfuricus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35045 Former RDP Sids: C.thrhysul ATCC 35045 = DSM 567 (T) isolate_name= E100-69 NB: former name Clostridium thermohydrosulfuricum BASE COUNT 269 a 254 c 388 g 182 t 3283 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... ........NU -AGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- NAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-AG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-NGA- 1321 -UGCA-CAUG A-AAC-UGGG U-GGCNA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|N|G-CCN- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAAC.. .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .N)G------ UGCNAG---- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA G..)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ...N(---AG ---UGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----CGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCGGA-C CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC...).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.thsulf 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 567 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter thermohydrosulfuricus str. E100-69 DSM 567 (T). ORGANISM Thermoanaerobacter thermohydrosulfuricus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 567 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09161 DSM 567 (T) = ATCC 35045 isolate_name= E100-69 BASE COUNT 457 a 406 c 597 g 305 t 2611 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---GCACU CAACU-AAGU GCUUACUU-A AGGGGAA--- ---------- 181 ---------- ---------- ---------- (---GAAGUN UAGUAGAAGA AGAAAGUAAU 241 AAAAGUGGU- -)-------- ---------- ---------- ---------- ---------- 301 ----GCAAAG UA-AGGUAAG CACGG-AGUU GAGUGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---C -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-AG----G AG--G-AA-- ---GGUAG-- ---------- 601 --(------- --CGGAA--- ---)------ ---------| --CUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGA- 1321 -UGCA-CAUG A-AAC-UGGG U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CCCGGCACUC AAGUG----- --(------- 2041 ---------- ---GGCAUGA UAGAGAAGGU AGUAAGAGGG AGAAUGAAGU GC-------- 2101 ---------- --)------- CUACUUGAGU GCCGGG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--UCU- 2281 AG--UUGC-C AG-UCCGUCA CUCAACUGAA CAUGUUAGGA AAGA(---GU ---AGA--)G 2341 AGGAAGGGA- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ----UAGCGU GUUCAGUUGA GUGACGGA|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCGGA-C CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-GCG 3121 G-UGA-C-CC -AA-CCCGGC ACUCAAGUGG GCAUGUU--- -----(---- -AAAACGUGA 3181 UGAAGAGAAA A--------- ------AA-- -------)-- ---------- AACGUGCCCA 3241 NUGGANUGCC -GGAGG-G-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.wiegel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter wiegelii str. Rt8.B1. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter wiegelii str. Rt8.B1. ORGANISM Thermoanaerobacter wiegelii. REFERENCE 1 AUTHORS Cook,G.M., Rainey,F.A., Patel,B.K. and Morgan,H.W. TITLE Thermoanaerobacter wiegelii sp. nov. Characterization of a new obligately anaerobic thermophile, JOURNAL Int. J. Syst. Bacteriol. 46 (1), 123-127 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92513|g1222693 isolate_name= Rt8.B1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 355 a 362 c 503 g 244 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 GG-AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --UCAGAGCC CGGAAAU-CG (--AC----- ---------- ---------- 241 -------UUC -)CG-ACUUC CGACCUCUGG ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-GG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGAA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AUAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CA- 1261 C-UU-AAG|U CAG---GUGU A-AAA-AA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGA- 1321 -UGCA-CAUG A-AAC-UGGG U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- GC-------- CUGCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GGUAG----- ----GC---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CU--UCU- 2281 AG--UUGC-C AU-CGG---- ---------- ---------- ---G(---GA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CC -AA-CCC--- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.8 TAB.THERMOCOPRIAE_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.8 TAB.THERMOCOPRIAE_GROUP. ORGANISM 2.16.2.8 TAB.THERMOCOPRIAE_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.thcopr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter thermocopriae str. JT-3 (T) IAM 13577. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter thermocopriae str. JT-3 (T) IAM 13577. ORGANISM Thermoanaerobacter thermocopriae. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09167 Former RDP Sids: C.thcopria isolate_name= JT-3 (T) NB: former name Clostridium thermocopriae BASE COUNT 360 a 371 c 535 g 254 t 2856 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CACUCA-AC (--GU----- ---------- ---------- 241 --------A- -)GU-UGGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AG-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-AU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UA-GG----G AG--GAAA-- ---GGGAGG- ----C----- 601 --(------- ---GCAA--- ---)------ ------G--| -C-UAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| GUUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-G) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CA- 1261 A-UC-AAG|U CAG---GUGU A-AAA-GA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGU- 1321 -AGCA-UCUG A-AAC-UGGU U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCG -UUCCG-UGC 1741 CG--UA---- --GS-(SAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGG -G-AGCGA-- CC-------- UUACC----- --(GG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUAA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---C(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-AA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-CUG- CA-AC-ACCC -GAA-G-CCG 3121 --UGA-C-CC -AA-CCG--- ---------- ---------- -----(---- -GGGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.thcop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter thermocopriae str. JT-3 (T) IAM 13577. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter thermocopriae str. JT-3 (T) IAM 13577. ORGANISM Thermoanaerobacter thermocopriae. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09167 Former RDP Sids: C.thcpria2 C.thcopri2 isolate_name= JT-3 (T) NB: former name Clostridium thermocopriae BASE COUNT 360 a 371 c 535 g 254 t 2856 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CACUCA-AC (--GU----- ---------- ---------- 241 --------A- -)GU-UGGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AG-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-AU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UA-GG----G AG--GAAA-- ---GGGAGG- ----C----- 601 --(------- ---GCAA--- ---)------ ------G--| -C-UAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-GGCAAU-- GG-GC-(GGA A)-GCC-UGA CCCA|-GCGA CGCC-GC-GU 961 G-G-GG-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCCC| GUUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-G) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CA- 1261 A-UC-AAG|U CAG---GUGU A-AAA-GA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GGU- 1321 -AGCA-UCUG A-AAC-UGGU U-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -GC-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCG -UUCCG-UGC 1741 CG--UA---- --GS-(SAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGG -G-AGCGA-- CC-------- UUACC----- --(GG----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUAA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---C(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-AA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-CUG- CA-AC-ACCC -GAA-G-CCG 3121 --UGA-C-CC -AA-CCG--- ---------- ---------- -----(---- -GGGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2095 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2095. str. SBR2095. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2095. str. SBR2095. ORGANISM str. SBR2095. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84625|g871746 isolate_name= SBR2095 BASE COUNT 115 a 93 c 120 g 80 t 3968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-NGA-G -UGC-CU--A ACNC-AUGCA A-GUC-GAGC 121 G--AU----U ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UC (--UU----- ---------- ---------- 241 --------GA -)GA-UUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---CAUCAAU GGACCA---- --G|-AU--- AGCG-GCAG- 361 -A-CG-AG-U GAGU---AAC -AC-GUAGG- CAA--CCU-A C-CCUU---A -AAUA-G-UG 421 -AAU-AA-CA C--------- ------CG-- C(-GAAA-)G -CGGU-G--C UAAUACA-CC 481 AU-AUA---- ---------- -------U-U UU-U--U-GA ---AAG-(-- --------GC 541 AU-------- -)-CUU---U UG-AA----A AA--GAAA-- ---GGCCC-- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --GGGU--C- G--UUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-CG-GU-( GU-AAU-AG) -A-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AC-C-CG| -G-GCU--(G -AAA)-GGCC ----GG-A-- CGG-G|C-AC -GAUGG-C-A 841 (CUGA-GA-C ACG)--GGCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCAA CUCU-GC-GU 961 G-A-GG-G-A C-GAA--G-A UC(--UU-CG --)GA-UUGU AAA--CCUC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.2.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.2.9 TAB.BROCKII_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.2.9 TAB.BROCKII_GROUP. ORGANISM 2.16.2.9 TAB.BROCKII_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.ethan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter ethanolicus str. 39E ATCC 33223. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter ethanolicus str. 39E ATCC 33223. ORGANISM Thermoanaerobacter ethanolicus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33223 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09164 isolate_name= 39E NB: strain sequenced is held at the collection of H.W.Morgan , Hamilton, NZ BASE COUNT 367 a 374 c 524 g 247 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---GCAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AC (--UU----- ---------- ---------- 241 --------AN -)GN-CGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-GGU---A UG-AG----G AG--GA-A-- ---GGUAG-- ---------- 601 --(------- ---CGGGA-- ---)------ ---------| --CUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CUCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-UC-AAG|U CAG---GUGU A-AAA-UA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------- UUACC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- GGUGA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CG-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 --UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.brocki 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter brockii str. HTD4 DSM 1457 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter brockii str. HTD4 DSM 1457 (T). ORGANISM Thermoanaerobacter brockii. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 1457 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09165 DSM 1457 (T) = ATCC 53556 = ATCC 33075 isolate_name= HTD4 BASE COUNT 368 a 371 c 525 g 248 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---GCAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AC (--UU----- ---------- ---------- 241 --------AA -)GG-CGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAG-C-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-AG----G AG--GA-A-- ---GGUAG-- ---------- 601 --(------- ---CGGGA-- ---)------ ---------| --CUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-UC-AAG|U CAG---GUGU A-AAA-UA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- G-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------- UUACC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- GGUGA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 --UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Gluc1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. from str. from Siljan ring drill (~3 km down). ACCESSION No information KEYWORDS No information. SOURCE str. from str. from Siljan ring drill (~3 km down). ORGANISM str. from. REFERENCE 1 AUTHORS Szewzyk,U. JOURNAL Unpublished (1993) STANDARD No information COMMENTS isolate_name= from Siljan ring drill (~3 km down) isolate_name= Gluc1 BASE COUNT 354 a 351 c 503 g 245 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NGRACCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---GCAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AC (--UU----- ---------- ---------- 241 --------AA -)GU-UGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AAGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- NAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GN 541 AU-------- -)-CCU---A UG-AG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGNA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCNC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-UC-AAG|U CAG---GUGU A-AAA-UA-N CC-GGG-C(- UC-A)A-CCC -GG-G-NAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGN-----NA G-GA-GAGGG NNG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------- UUACC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------NN N-)------- NGUGA----- ----GG---| AGC-CU-GCN |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GN-N A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GGNAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.brock4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter brockii subsp. finnii str. AKo-1 DSM 3389 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter brockii subsp. finnii str. AKo-1 DSM 3389 (T). ORGANISM Thermoanaerobacter brockii. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 3389 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09166 Former RDP Sids: Tab.finnii isolate_name= AKo-1 NB: former name Thermoanaerobacter finnii BASE COUNT 372 a 374 c 517 g 254 t 2859 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C CG---ACAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AC (--UU----- ---------- ---------- 241 --------GA -)GU-UGN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAGC---- CGG|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---AGG-(-- --------GC 541 AU-------- -)-CCU---A UG-AG----G AG--GGAA-- ---GGUAGC- ---------- 601 --(------- ---GGGA--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-UC-AAG|U CAG---GUGU A-AAA-UA-C CC-GGG-C(- UC-A)A-CCC -GG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---G)C-GA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------- UUACC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- GGUGA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---NAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-U-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CC -AA-CCN--- ---------- ---------- -----(---- -NNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(NGA-A)GG UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.brock3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter brockii subsp. lactiethylicus DSM 9801 (T). ORGANISM Thermoanaerobacter brockii. REFERENCE 1 AUTHORS Cayol,J.-L., Ollivier,B., Patel,B.K.C., Rabot,G., Magot,M., Ageron,E., Grimont,P.A.D. and Garcia,J.-L. TITLE Description of Thermoanaerobacter brockii subsp. lactiethylicus subsp. nov., isolated from a deep subsurface French oil well, a proposal to reclassify Thermoanaerobacter finnii as Thermoanaerobacter brockii subsp. finii comb. nov., and an emended description of Thermoanaerobacter brockii JOURNAL Int. J. Syst. Bacteriol. 45, 783-789 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14330|g675454 Former RDP Sids: Tab.lactic DSM 9801 (T) = SEBR 5268 NB: former name Thermoanaerobacter lacticus BASE COUNT 364 a 364 c 519 g 257 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----- -----CCUGU AG-------- ---------- ---------- ---------- 181 ---------- ---------- ----CCA-AC (--UU----- ---------- ---------- 241 --------AU -)GU-UGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------G AGACGU---- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CCUU---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U CC-U--U-GU ---GGG-(-- --------GC 541 AU-------- -)-CCU---C UGAUG----A GG--GA-A-- ---GGUGG-- ---------- 601 --(------- ---AGGCAG- ---)------ ---------| --CUAC--C- G--GUU---- 661 ----AAGG-- AUG---G-|G UCCGC----- -UN|----CC C--UUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 UGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| AAUA-GU-GU 1021 --GG-GAA-- GA-------- ---------( -----AGGGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-C-AC ---G--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CG- 1261 U-UC-AAG|U CAG---GUGU A-AAA-UA-C CC-GGG-C(- UC-A)A-CCG -AG-G-GAU- 1321 -AGCA-CUUG A-AAC-UGGG C-GGCUA-GA GGG-----CA G-GA-GAGGG GAU-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|-C- ---------A ---GGUA--- GUA----GCG 1981 -AGC-C--(- GAAA-)-GGU -G-AGCGA-- CC-------- UCACC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------AA A-)------- GGUGA----- ----GG---| AGC-CU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAG-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UCGUA-AUC 3001 GC-GGA-(UC -AGN-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-NGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GGGAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.ethan3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter ethanolicus str. 39E ATCC 33223. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter ethanolicus str. 39E ATCC 33223. ORGANISM Thermoanaerobacter ethanolicus. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33223 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58350 Former RDP Sids: C.thysu39E isolate_name= 39E NB: former name Clostridium thermohydrosulfuricum BASE COUNT 197 a 188 c 262 g 139 t 3590 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .........C UWAUACU-GG 481 AU-AAC---- ---------- -------U-C CU-U--G-U- ---A-G-(-- --------GC 541 AU-------- -)-CCU---- AU-AA----N AG--GA-A-- ---GRUAC-- ---------- 601 --(------- ---ANNA--- ---)------ ---------| --MUAC--Y- N--CUU---- 661 ----AAGG-- AUA---G-|G CCYGC----- -GU|----CC C--AUCA-G- CUA-R---UU 721 GG-UA-GG-( GU-AAC-AG) -C-CUACH-A A|-GGC-GA- CGA------- -----CG-GG 781 W-AG-C-CG| -G-CMW--(R -ARA)-GGGU ----RG-U-- MGR-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCH -HGA-C-UCH -(WAMG)--G GAG-GCAAG- C-AW--GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UNA SSCA|-GCGA CGCN-GC-GU 961 G-A-GC-G-A G-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| GAUA-GU-GU 1021 --RG-GNN-- HG-NH----- ---------( -----NGGCA ---------) ---------- 1081 ---------- ---------- U-GHCCGGU- N-CCA-C-NN C-G---AAAG ---------C 1141 -CCCGGCU.. .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... ........U- 1321 -WGCA-CUUG A-AAC-UGGG Y-GGCWA-GG .......... ........GG NHG-U|GGHA 1381 UU-CCHGGU- GUA-GCN(-G UGAAA)-UGC -GU-AGAU-A UC-GNGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGACN-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAM-G-AUGG G--UN-MU-- -------A|G -GW-GU-GGG -AW-GM---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCMG-UGC 1741 CG--UA---- --GU-(UAA- ---C)R-HW- AUNA-GUWWC H|N|G-C... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)...UGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUGM-M AG-HNG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CMG|G 2701 G-CA-CU-CA U-AGA-GG-G A-CU-G-CMG --UG(-GACW AC)-WWC-G- -GAAGGA-AG 2761 G-WR-GGN-H UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CHGAG GGA-A-G-C- GA-AGC-H(N 2881 -CGA)KGUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.aceet2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter acetoethylicus str. HTB2/W (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter acetoethylicus str. HTB2/W (T). ORGANISM Thermoanaerobacter acetoethylicus. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58348 Former RDP Sids: Tbr.aethyl isolate_name= HTB2/W (T) NB: former name Thermobacteroides acetoethylicus BASE COUNT 160 a 183 c 247 g 109 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ....HC--H- N--CUU---- 661 ----AAGG-- AUN---G-|G CCCGC----- -GU|----CC C--AUCA-G- CUH-S---UU 721 GG-UA-GG-( GU-HAC-GG) -C-CUWCH-H A|-GGC-GA- CSW------- -----CG-GG 781 H-AG-C-CG| -G-CHW--(G -AGW)-GGGU ----NG-U-- HGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGH-C-HNN -(NCAG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-NNA CGCA|-GCGA CGCC-GC-GU 961 G-AGGCAG-A G-GAA--G-G CC(--UH-CG --)GG-UCGN AAA--GCNC| GAUA-GU-GN 1021 --GG-GAA-- GR------MG ---------( ------GGCA ---------) --------NN 1081 ---------- -------G-- N-CC-NGGN- A-CNR-CNGC G--A--GRAR ---------C 1141 -CCCGGC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......GG- HAUW-YNNN- 1441 -U-N-NH(-G HH-G)GCGW- -CUCUCUN-- ---------- ---------- ---------G 1501 WCU--GA-CC CUGACN-CUG AG-N------ -------CG- C-GAAA-GH- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUUC)-CCU- ----NGUA-G UC----CNN- G-CC-GU--A 1621 AACUG-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AU-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUNCC C|-|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UCU- 2281 AG--UUDC-H AG-N-G---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- W-WGA-GG-G A-CU-G-CHG --UG(-GA-C AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-A-N-C- GA-AGC-A(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCG-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.brock2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter brockii str. HTD4 (T). ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter brockii str. HTD4 (T). ORGANISM Thermoanaerobacter brockii. REFERENCE 1 AUTHORS Bateson,M.M., Wiegel,J. and Ward,D.M. TITLE Comparative Analysis of 16S Ribosomal RNA Sequences of Thermophilic Fermentative Bacteria Isolated from Hot Spring Cyanobacterial Mats JOURNAL Syst. Appl. Microbiol. 12, 1-7 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58349 Former RDP Sids: Tam.brock2 isolate_name= HTD4 (T) NB: former name Thermoanaerobium brockii BASE COUNT 174 a 179 c 247 g 119 t 3657 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-..A-A-- ---GGUAC-- ---------- 601 --(------- ---UNNAC-- ---)------ ---------| --GUAC--C- G--CUU---- 661 ----AAGG-A AUG---G-|G CCCGC----- -RU|----CC C--AUCA-G- CUA-G---UU 721 GGAUA-GG-( GU-AAC-GG) -C-CUACH-A A|-GGC-GA- CSW------- -----CG-GG 781 U-AG-C-CG| -G-CCRAU(G -AGN)-GNGU ----GG-U-- MGR-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -HGA-C-UCM W(ACAG)--G GAG-GCAAG- C-AN--GU-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CSCN|-NCGA CGCC-GC-GU 961 G-A-GG-C-G A-GGAA-G-G C-(--UU-CG --)GG-UCGU WCA--GCUC| GAUA-GU-KU 1021 --GG-GAA-- GH-------- ---------( -----MNNNN ---------) ---------- 1081 ---------- ---------- U-GN-CGGU- N-CC...... .........G ---------C 1141 -CCCGNC... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .AG-U|RGAA 1381 UUACCCGGU- GUA-RCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCAG- 1441 -U-G-RC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GA-CC CUGASS-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CY-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AN-GC---- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- -------GCA -UUCCG-UGC 1741 CG--UN---- --GU-(UAA- ---C)G-CA- AUAA-GUNCC C|-|G-CCU- G-GGGNGUNC 1801 GGC-C---(G C..)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .....G---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-CA U-AGA-GG-G A-CU-G-CAR --UG(-GA-C AA)-CAM-G- -GAGG-A-AG 2761 G-UG-GGG-A UR-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-AGG-C- GA-AGC-M(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-GUC- CAAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCG-G..... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3-SPO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3 SPOROMUSA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3 SPOROMUSA_AND_RELATIVES. ORGANISM 2.16.3 SPOROMUSA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1 SPOROMUSA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1 SPOROMUSA_GROUP. ORGANISM 2.16.3.1 SPOROMUSA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1.1 SLM.RUMINA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1.1 SLM.RUMINA_SUBGROUP. ORGANISM 2.16.3.1.1 SLM.RUMINA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sln.rum192 4376 bp RNA RNA 02-JUL-1998 DEFINITION Selenomonas ruminantium str. GA192. ACCESSION No information KEYWORDS No information. SOURCE Selenomonas ruminantium str. GA192. ORGANISM Selenomonas ruminantium. REFERENCE 1 AUTHORS Krumholz,L.R., Bryant,M.P., Brulla,W.J., Vicini,J.L., Clark ,J.H. and Stahl,D.A. TITLE Proposal of Quinella ovalis gen. nov., sp. nov., based on phylogenetic analysis JOURNAL Int. J. Syst. Bacteriol. 43, 293-296 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62702 isolate_name= GA192 BASE COUNT 376 a 345 c 461 g 292 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AGGYG AUU------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-AG (--CU----- ---------- ---------- 241 --------NN -)CU-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------R AGARYC---- ---|-----G AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CGCA---A -AGAU-G-GG 421 -GAC-AA-CA G--------- ------UC-- C(-GAAA-)G -GACU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U CA-A--G-UU ---UCC-(-- --------GC 541 AU-------- -)-GGG---A GC-UU----G AU--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----UGCG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GA-CG 1021 --GG-GAC-- GA-AUGU-GC --GAA-AUG( C----GAAUR -----G---) UUUU-UC-GC 1081 ---------- -------A-A U-GA-CGGU- A-CCC-G-UC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GG-AA- 1261 G-GC-AAG|U CAG---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-AUUG A-AAC-UGUC U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGG 1981 -CCN-A--(- GAGA-)-UAR -N-CCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UW ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAU-GA-G A-CU-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CAGAG AGC-A-G-C- GA-CCC-C(G 2881 -CGA)GGGC- ---------- AA-GCGAA-C CCCAU-AAAC -CA-U-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGG-(UC -AGC-AU)-A CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-UN -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUA-U-A G-CC-GU-CG .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sln.rumHD4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Selenomonas ruminantium str. HD4. ACCESSION No information KEYWORDS No information. SOURCE Selenomonas ruminantium str. HD4. ORGANISM Selenomonas ruminantium. REFERENCE 1 AUTHORS Krumholz,L.R., Bryant,M.P., Brulla,W.J., Vicini,J.L., Clark ,J.H. and Stahl,D.A. TITLE Proposal of Quinella ovalis gen. nov., sp. nov., based on phylogenetic analysis JOURNAL Int. J. Syst. Bacteriol. 43, 293-296 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62703 isolate_name= HD4 BASE COUNT 354 a 328 c 435 g 267 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.CG--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CGCA---A -AGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- C(-GAAA-)G -GACU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U CA-G--A-YU ---CCC-(-- --------GC 541 AU-------- -)-GGG---A GA-CU----G AU--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----UGCG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GA-CG 1021 --GG-GAC-- GA-AUGU-GC --URG-AUG( C----GAAUR -----G---) UUUC-UA-GC 1081 ---------- -------A-A U-GA-CGGU- A-CCC-G-UC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GG-AA- 1261 G-GC-AAG|U CAG---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-AUUG A-AAC-UGUC U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-N--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGA 1981 -CCU-A--(- GAGA-)-UAG -G-UCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAU-GA-G A-CU-G-NCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CAGAG AGC-A-G-C- GA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCGAA-C CCCAU-AAAC -CA-U-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGG-(UC -AGC-AU)-A CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-CA -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUG-C-A G-CC-GU-C. .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sln.rumina 4376 bp RNA RNA 02-JUL-1998 DEFINITION Selenomonas ruminantium subsp. lactilytica DSM 2872 (T). ACCESSION No information KEYWORDS No information. SOURCE Selenomonas ruminantium subsp. lactilytica DSM 2872 (T). ORGANISM Selenomonas ruminantium. REFERENCE 1 AUTHORS Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. and Seidel-Ruefer,H. TITLE Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., sp. nov. , and Zymophilus paucivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 363 a 339 c 461 g 283 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-U.... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CGCA---A -AGAU-G-GG 421 -GAC-AA-CA G--------- ------UC-- C(-GAAA-)G -GACU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U CA-G--A-CU ---CCC-(-- --------GC 541 AU-------- -)-GGG---A GC-CU----G AU--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUAU--C- G--CUU---- 661 ----UGCG-- AUG---G-|G UNUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GA-CG 1021 --GG-GAC-- GA-ACGU-GC --GAG-AUG( C----GAAUA -----G---) UUUC-UU-GC 1081 ---------- -------A-A U-GA-CGGU- A-CCC-G-UC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GG-AA- 1261 G-GC-AAG|U CAG---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-AUUG A-AAC-UGUC U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(NNGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAU-GA-G A-CU-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CAGAG GGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCGAA-C CCCAU-UAAC -CA-U-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGG-(UC -AGC-AU)-A CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-UA -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAUA-U-A G-CC-GU-CU A-AGGU-NGG GGC-GA-UG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sln.lactic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Selenomonas lacticifex str. VB4b DSM 20757 (T). ACCESSION No information KEYWORDS No information. SOURCE Selenomonas lacticifex str. VB4b DSM 20757 (T). ORGANISM Selenomonas lacticifex. REFERENCE 1 AUTHORS Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. and Seidel-Ruefer,H. TITLE Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., sp. nov. , and Zymophilus paucivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 20757 (T) DSM 20757 (T) = ATCC 49690 isolate_name= VB4b NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 374 a 326 c 454 g 295 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-U.... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUN-GCAA- 361 -A-CG-GG-U GAGU---AAC -NC-GUAGG- CAA--CCU-G C-CUUU---G -AGAU-G-GG 421 -GAC-AA-CA G--------- ------UU-- C(-GAAA-)G -GGCU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U AU-A--U-UU ---UCC-(-- --------AC 541 AU-------- -)-GGA---A GA-UA----U AU--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- G--CUC---- 661 ----AAAG-- AUG---G-|G UNUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-CG 1021 --GG-GAC-- GA-AUGU-GC --AGU-AUU( U----GAAUA -----A---) AGUA-CU-GC 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GG-AA- 1261 G-GU-AAG|U CGG---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-AUCG A-AAC-UAUC U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CU -UUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(NNGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGG 1981 -UGC-A--(- GAGA-)-UGC -A-UCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAA-GA-G A-CU-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CACGG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCGAA-C CCCAU-AAAC -CA-U-CCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-UGG-(UC -AGC-AU)-A CAG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-UA -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACA-C-A G-CC-GU-CU A-AGGU-NGG GGC-GA-UG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scw.succin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Schwartzia succinivorans. ACCESSION No information KEYWORDS No information. SOURCE Schwartzia succinivorans. ORGANISM Schwartzia succinivorans. REFERENCE 1 AUTHORS van Gylswyk,N.O., Hippe,H. and Rainey,F.A. TITLE Schwartzia succinivorans gen. nov., sp. nov., another ruminal bacterium utilizing succinate as the sole energy source JOURNAL Int. J. Syst. Bacteriol. 47 (1), 155-159 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y09434|g1890230 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 380 a 354 c 481 g 274 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GGC---- -----GAUUU G--------- ---------- ---------- ---------- 181 ---------- ---------- ----AAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAUGA---- ---|GCC--U AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCUC---A -GGAU-G-GG 421 -GAC-AA-CG G--------- ------CC-- C(-GAAA-)G -GACC-G--C UAAUACC-GA 481 AU-GAC---- ---------- -------G-U AU-C--G-GG ---AUC-(-- --------GC 541 AU-------- -)-GAU---C CU-GA----U AC--CAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCCGU--C- A--CCU---- 661 ----GAGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CG 1021 --GG-GAC-- GA-AGGG-GC --AGA-UCA( G----GAAA- -----U---) GGGU-CU-GC 1081 ---------- -------U-U A-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GU -G|-GG-AC- 1261 G-GU-AAG|U CUU---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)C-CCC -CG-U-GAG- 1321 --GGG-AAAG A-AAC-UAUC G-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AUCG--- -AA----AGC 1981 -GCC-A--(- GAGA-)-UGG -U-GCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CGA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- A-AAG-GA-G A-CU-G-CCG --CG(-GA-G AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CAGAG AGC-A-G-C- GA-CCC-C(G 2881 -CGA)GGGU- ---------- AA-GCGAA-C CUCAU-AAAC -CA-U-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G--------- -----C---- ---------- ---------- -----(---- -GC------- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------A G-CC-GU-CU A-AGGU-GGG GGC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Qui.ovalis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Quinella ovalis.. ACCESSION No information KEYWORDS No information. SOURCE Quinella ovalis. ORGANISM Quinella ovalis. REFERENCE 1 AUTHORS Krumholz,L.R., Bryant,M.P., Brulla,W.J., Vicini,J.L., Clark ,J.H. and Stahl,D.A. TITLE Proposal of Quinella ovalis gen. nov., sp. nov., Based on phylogenetic analysis JOURNAL Int. J. Syst. Bacteriol. 43, 293-296 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62701 BASE COUNT 379 a 322 c 461 g 281 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~....AAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAA -GC-GCAGG- UAA--UCU-G C-CGCA---A -AGAC-G-GG 421 -GAC-AA-CG U--------- ------UU-- C(-GAAA-)G -GGAC-G--C UAAUACC-GG 481 AU-GUU---- ---------- -------G-U GU-G--A-GA ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-GA----C AU--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----UGCG-- AGG---A-|G CCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-U|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GC(--UU-CG --)GC-UCGU AAA--GCUC| UUUU-CU-UG 1021 --AG-GAC-- GA-AUGG-CC --UAU----( -----UAG-- ---------) ---A-UA-GG 1081 ---------- -------C-A GAGA-CGGU- A-CUU-A-GG G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-NC -G|-GN-NU- 1261 U-GC-AAG|U CCA---AAUU A-AAA-GU-G CA-GGA-G(- UN-A)U-GUC -UG-U-GAU- 1321 --GGU-UUGG A-AAC-UGCN A-AUCUU-GA GAG-----CA G-GA-GAGGC AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUGCUN-- ---------- ---------- ---------G 1501 ACU--GA-AU CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- --------UC -CUCCG-UGC 1741 CG--GA---- --GU-(AAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UC|--- ---------U ---GAGG--- -AA----UUC 1981 -UAA-U--(- GAAA-)-GUU -G-GGAG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| UCU-CA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CG--AUA- 2281 UG--UUAC-C AG-CGN---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-UAU-CG-G A-CA-G-CCC --GG(-GA-C AA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-UG -AA--CAAAA GGC-A-G-C- AA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-A CCCGA-AAAG -CA-G-UCC- ACAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- N)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CGU- UC-AC-ACCC -GAA-G-CCC 3121 ---------- ---------- ---------- ---------- -----(---- AANNGC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- ---G-GU-CU A-AGGC-GGG NNC-GA-UG- ACN-GGGG-U 3301 N---AAGUC- NNNA-CAAGG NAGCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sln.sputig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Selenomonas sputigena. ACCESSION No information KEYWORDS No information. SOURCE Selenomonas sputigena. ORGANISM Selenomonas sputigena. REFERENCE 1 AUTHORS Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. and Seidel-Ruefer,H. TITLE Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., sp. nov. , and Zymophilus paucivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 382 a 355 c 485 g 274 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -ACCUUU-AU (--UU----- ---------- ---------- 241 --------CG -)GU-AAAGG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--G AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CGAC---A -GGAU-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAAU-G--C UAAUACC-GA 481 AU-GGA---- ---------- -------G-U CC-G--G-GG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C CC-CG----G AU--AAAA-- ---GAUGGC- CUC-U----- 601 --(------- ---GAAU--- ---)------ ------A-U| -GCUAU--C- G--CCU---- 661 ----GUCG-- AUG---G-|G CCUNC----- -GU|----CU G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-AC 1021 --GG-GAC-- GA-AAAC-CG --AGC-UUG( A----GAAUA -----U---) UGAG-UU-UG 1081 ---------- -------G-G U-GA-CGGU- A-CCG-A-GC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-CA- 1261 U-AU-AAG|U CCA---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAG- 1321 --GGG-AUGG A-AAC-UGUA U-GCCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CC -UCCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGA 1981 -GCU-A--(- GAGA-)-UAG -C-UUCC--- NC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- A-AAG-GA-G A-CU-G-CCG --CG(-GA-G AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UG -GA--CAGAG GGA-A-G-C- GA-AGG-C(G 2881 -UGA)GCCG- ---------- GA-GCGGA-C CCCAC-AAAC -CA-U-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-CAU- UC-AC-GCCC -AAA-G-CCG 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-AGGC-GGG GGC-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Zyp.pauciv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Zymophilus paucivorans str. SH2 DSM 20756 (T). ACCESSION No information KEYWORDS No information. SOURCE Zymophilus paucivorans str. SH2 DSM 20756 (T). ORGANISM Zymophilus paucivorans. REFERENCE 1 AUTHORS Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. and Seidel-Ruefer,H. TITLE Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., sp. nov. , and Zymophilus paucivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS Organism information Culture collection: DSM 20756 (T) isolate_name= SH2 NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 380 a 321 c 445 g 299 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~AUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-U.... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 ......GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUUU---U -AGAU-G-GG 421 -GAC-AA-CA U--------- ------CG-- C(-GAAA-)G -CGGU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U GU-C--U-UU ---CCC-(-- --------AC 541 AU-------- -)-GGG---A AA-GC----U AC--UAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUGU--C- A--CUA---- 661 ----AAAG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-UG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU UAA--GCUC| UGUU-GU-UU 1021 --GA-GAC-- GA-ACGU-GC --AGU-AUA( C----GAAUA -----A---) UGUG-CU-GU 1081 ---------- -------A-A U-GA-CGGU- A-UCA-A-AC U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GU -G|-GG-AA- 1261 U-GU-AAG|U CAG---UCUU A-AAA-GU-G CG-AGG-C(- UC-A)A-CCU -CG-U-GAU- 1321 --GGG-ACAG A-AAC-UACA U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CU -UUCUG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGG 1981 -CUA-A--(- GAGA-)-UUA -G-UCCC--- UC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CAC-AA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGG-GA-G A-CU-G-CCG --CG(-GA-U AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-CA -CA--CAGAG GGA-A-G-C- GA-AGG-A(G 2881 -UGA)UCUG- ---------- GA-GCGGA-C CCCAA-AAAA -UG-U-CUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-NGG GGC-GA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pct.cerevi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pectinatus cerevisiiphilus. ACCESSION No information KEYWORDS No information. SOURCE Pectinatus cerevisiiphilus. ORGANISM Pectinatus cerevisiiphilus. REFERENCE 1 AUTHORS Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. and Seidel-Ruefer,H. TITLE Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., sp. nov. , and Zymophilus paucivorans sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS ATCC 29359 (T) = DSM 20467 NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 364 a 330 c 445 g 280 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-U.... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- CAA--CCU-G C-CUNC---A -AGAU-G-GG 421 -GAC-AA-CA C--------- ------UC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U AA-U--G-CU ---GCU-(-- --------GC 541 AN-------- -)-NNC---A GU-AU----U AC--CAAA-- ---GGUGGC- U--------- 601 --(------- ----UUU--- ---)------ --------A| -GCUAU--C- G--CUU---- 661 ----GGAG-- AUG---G-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UGACG-( GU-AAC-GG) -C-GCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A G-GAA--G-G UC(--UU-CG --)GA-UCGU UAA--GUUC| UGUU-GC-AG 1021 --GG-GAC-- GA-ACGG-CA --CUA-UAG( C----CAAUA -----A---) GUAU-AG-UG 1081 ---------- -------A-A U-GA-CGGU- A-CCC-U-GU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-AC- 1261 A-UU-AAG|C GGA---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-GUCC G-AAC-UGAG G-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CU -UUCUG-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AUUG--- -AC----GUA 1981 -UCC-A--(- GAGA-)-UGG -A-UAUU--- UU-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGU-GA-G A-CU-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UA -AA--CAGAG GGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-A CCCAU-AAAU -UA-U-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UACUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAU- CC-AC-ACCC -GAA-G-CCG 3121 GCUAA-G-G- ----GCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGCA-C-C-G A-CC-GU-CU A-AGGU-NGG GGC-GA-UG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pct.frisin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pectinatus frisingensis. ACCESSION No information KEYWORDS No information. SOURCE Pectinatus frisingensis. ORGANISM Pectinatus frisingensis. REFERENCE 1 AUTHORS and Seidel-Ruefer,H. Shleifer,K.H., Leuteritz,M., Weiss,N., Ludwig,W., Kirchhof,G. TITLE paucivorans sp.nov. Taxonomic study of anaerobic, gram-negative, rod-shaped bacteria from breweries: emended description of Pectinatus cerevisiiphilus and description of Pectinatus frisingensis sp. nov., Selenomonas lacticifex sp. nov., Zymophilus raffinosivorans gen. nov., spec.nov., and Zymophilus JOURNAL Int. J. Syst. Bacteriol. 40, 19-27 (1990) STANDARD No information COMMENTS NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase paper lists this as Pectinatus sp. BASE COUNT 369 a 332 c 449 g 282 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -AAAC-GC-- UGGC-GGC-G -UGC-U.... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .........U GAGU---AAC -NN-NUAGG- CAA--CCU-G C-CUCC---A -AGAU-G-GG 421 -GAC-AA-CA U--------- ------CU-- C(-GAAA-)G -GGGU-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U AA-A--G-CG ---AUU-(-- --------GC 541 AU-------- -)-AAU---G GC-UU----U AC--CAAA-- ---GGCGGC- U--------- 601 --(------- ----UUU--- ---)------ --------A| -GCUGU--C- G--CUU---- 661 ----GGAG-- AUG---G-|G CCUAC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UGACG-( GU-AAC-GG) -C-GCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A G-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GC-AG 1021 --GG-GAC-- GA-AUGG-CA --GUA-GUG( U----UAAUA -----C---) CACU-AU-UG 1081 ---------- -------A-A U-GA-CGGU- A-CCC-U-GU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GCGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GA-UG- 1261 A-CU-AAG|C GGA---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GAU- 1321 --GGG-AUUC G-AAC-UGGU C-AUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUN- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CU -NCCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(NNGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AUUG--- -AC----GUA 1981 -UGC-A--(- GAGA-)-UGC -A-UAUU--- UU-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AAU-GA-G A-CU-G-CCG --CG(-GA-U AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAC-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-UA -CA--CAGAG GGA-A-G-C- GA-AGG-A(G 2881 -UGA)UCUG- ---------- GA-GCGGA-A CCCAA-AAAA -UA-U-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAU- CC-AC-ACCC -GAA-G-CCG 3121 GCUAA-G-G- ----GCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGAA-C-C-G A-CC-GU-CU A-AGGU-NGG GGC-GA-UG- ACC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1.2 VLN.PARVULA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1.2 VLN.PARVULA_SUBGROUP. ORGANISM 2.16.3.1.2 VLN.PARVULA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vln.dispar 4376 bp RNA RNA 02-JUL-1998 DEFINITION Veillonella dispar. ACCESSION No information KEYWORDS No information. SOURCE Veillonella dispar. ORGANISM Veillonella dispar. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Phylogenetic placement of Dialister pneumosintes (formerly Bacteroides pneumosintes) within the Sporomusa subbranch of the Clostridium subphylum of the Gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 45, 403-405 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84006|g793883 DSM 20735 (T) = ATCC 17748 BASE COUNT 399 a 341 c 468 g 301 t 2867 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G A----GC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAU- CAA--CCU-G C-CCUU---C -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-U CU-A--A-NC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G GA-UA----G AU--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- A--CUG---- 661 ----AAGG-- AGG---G-|G AUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-AA-UC 1021 --GG-GAC-- GA-AAGG-CC --UUC-UUG( C----GAAUA -----G---) UUAG-AA-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCG-G-AA U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GA-UU- 1261 G-GU-CAG|U CUG---UCUU A-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGGG-AUGG A-AAC-UGCC A-AUCUA-GA GUA-----UC G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|--- ---------G ---AUGG--- -AC----AGA 1981 -ACU-A--(- GAGA-)-UAG -U-UCCU--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CCA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-CU-A |-UC--UUA- 2281 UG--UUGN-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGA-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-GU -UA-AUAGAC GGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CCGAG-AAAC -AC-U-CUC- UCAGUUCGGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- AA-GU-GCCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-AAA GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vln.parvul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Veillonella parvula. ACCESSION No information KEYWORDS No information. SOURCE Veillonella parvula. ORGANISM Veillonella parvula. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Phylogenetic placement of Dialister pneumosintes (formerly Bacteroides pneumosintes) within the Sporomusa subbranch of the Clostridium subphylum of the Gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 45, 403-405 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84005|g793884 DSM 2008 (T) = ATCC 10790 BASE COUNT 396 a 342 c 466 g 297 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G A----GC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAU- CAA--CCU-G C-CCUU---C -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-U CU-A--A-CC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G GA-UA----G AU--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- A--CUG---- 661 ----AAGG-- AGG---G-|G AUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-AA-UC 1021 --GG-GAC-- GA-AAGG-CC --UUC-UUG( C----GAACA -----G---) UUAG-AA-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCG-G-AA U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GA-UC- 1261 A-GU-CAG|U CUG---UCUU A-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGGG-AUGG A-AAC-UGCU G-AUCUA-GA GUA-----UC G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|--- ---------G ---AUGG--- -AC----AGA 1981 -ACN-A--(- GAGA-)-UNG -U-UCCU--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CCA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-CU-A |-UC--UUA- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGA-GA-G A-CU-N-NCG --CA(-GN-C AA)-UGC-G- -GNGG-A-AG 2761 G-CG-GGG-A UN-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CN--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGG-A-GU -UA-AUAGAC GGA-A-G-C- GA-GAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-C CCGAG-AAAC -AC-U-CUC- UCAGUUCGGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- AA-GU-GCCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-AAA GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vln.atypic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Veillonella atypica. ACCESSION No information KEYWORDS No information. SOURCE Veillonella atypica. ORGANISM Veillonella atypica. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Phylogenetic placement of Dialister pneumosintes (formerly Bacteroides pneumosintes) within the Sporomusa subbranch of the Clostridium subphylum of the Gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 45, 403-405 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84007|g793882 DSM 20739 (T) = ATCC 17744 BASE COUNT 394 a 343 c 471 g 300 t 2868 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GNAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G A----GC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAU- CAA--CCU-G C-CCUU---C -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-U CC-A--A-UC ---UCG-(-- --------GC 541 AU-------- -)-CGA---G AC-UG----G AU--GAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- A--CUG---- 661 ----AAGG-- AGG---G-|G AUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-AA-UC 1021 --GG-GAC-- GA-AUGG-UU --CUU-GUG( C----GAAUA -----G---) UGCG-AG-GA 1081 ---------- -------U-U U-GA-CGGU- A-CCG-G-AA U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GA-UC- 1261 A-GU-CAG|U CUG---UCUU A-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGGG-AUGG A-AAC-UGCU N-AUCUA-GA GUA-----UC G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|--- ---------G ---AUGG--- -AC----AGA 1981 -ACN-A--(- GAGA-)-UGG -U-UCCU--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CCA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-CU-A |-UC--UUA- 2281 UG--UUGN-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-UGA-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-A-GU -UA-AUAGAC GGA-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CCGAG-AAAC -AC-U-CUC- UCAGUUCGGA 2941 U-CGUAGGC- (UGCAAC-U- C)-GCCUACG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUC- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- AA-GU-GCCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-AAA GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.SC-5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. SC -5. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. SC -5. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36297|g530377 isolate_name= SC -5 BASE COUNT 433 a 345 c 474 g 301 t 2823 others ORIGIN 1 .......... .......... .......... .GUGCUGCAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----A A----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUGAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU AUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UU|-UC--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- CAA--CCU-G C-CUUA---A -GGAU-G-GG 421 -GAU-AA-CA G--------- ------AC-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------U-U CU-A--A-GC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G CA-UA----G AA--GAAA-- ---GGGUGG- CC--UC---- 601 --(------- --UACAA--- ---)------ -----GAAA| -GCUAU--C- G--CCU---- 661 ----UAAG-- AGG---G-|G UUUGC----- -GA|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUG-AU-UC 1021 --GG-GAC-- GA-AAGG-GU --UUG-UGG( U----GAAUA -----A---) UCAU-AG-AC 1081 ---------- -------A-U U-GA-CGGU- A-CCG-A-AA A-AG--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CCA---UCUU A-AAA-GC-G UG-GGG-C(- UC-A)A-CCC -CA-U-GA-- 1321 -GGGG-AUGG A-AAC-UGGG A-AGCUG-GA GUA-----UC G-GA-GAGGA AAGUG|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUA-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AUCG--- -CA----AUC 1981 -CAU-A--(- GAAA-)-UAU -G-GAGU--- UC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CGA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-U---UUC- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GGA-GA-G A-CC-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-- GUA--CUACA AUGGG-U-GC -CA-ACAAAG AGA-A-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-GCGGA-C CUCAU-AAAC -GC-A-CCC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UGAG A--GU-UAG- AG-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGA GCU-GA-UG- AUU-GGAG-U 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(CGU-A)UC CGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.SC_3D 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. SC 3D. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. SC 3D. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13040|g577690 isolate_name= SC 3D BASE COUNT 420 a 330 c 456 g 287 t 2883 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----A A----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUGAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU AUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UU|-UC--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- CAA--CCU-G C-CUUA---A -GGAU-G-GG 421 -GAU-AA-CA G--------- ------AC-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------U-U CU-A--A-GC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G CA-UA----G AA--GAAA-- ---GGGUGG- CC--UC---- 601 --(------- --UACAA--- ---)------ -----GAAA| -GCUAU--C- G--CCU---- 661 ----UAAG-- AGG---G-|G UUUGC----- -GA|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUG-AU-UC 1021 --GG-GAC-- GA-AAGG-GU --UUG-UGG( U----GAAUA -----A---) UCAU-AG-AC 1081 ---------- -------A-U U-GA-CGGU- A-CCG-A-AA A-AG--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CCA---UCUU A-AAA-GC-G UG-GGG-C(- UC-A)A-CCC -CA-U-GA-- 1321 -GGGG-AUGG A-AAC-UGGG A-AGCUG-GA GUA-----UC G-GA-GAGGA AAGUG|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUA-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AUCG--- -CA----AUC 1981 -CAU-A--(- GAAA-)-UAU -G-GAGU--- UC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CGA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-U---UUC- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GGA-GA-G A-CC-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-- GUA--CUACA AUGGG-U-GC -CA-ACAAAG AGA-A-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-GCGGA-C CUCAU-AAAC -GC-A-CCC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UGAG A--GU-UAG- AG-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGA GCU-GA-UG- AUU-GGAG-U 3301 G---AAGUC. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Di.psintes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dialister pneumosintes. ACCESSION No information KEYWORDS No information. SOURCE Dialister pneumosintes. ORGANISM Dialister pneumosintes. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Phylogenetic placement of Dialister pneumosintes (formerly Bacteroides pneumosintes) within the Sporomusa subbranch of the Clostridium subphylum of the gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 45, 403-405 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82500|g1006655 BASE COUNT 424 a 334 c 456 g 290 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----A A----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUGAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUU AUU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -UU|-UC--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- CAA--CCU-G C-CUUA---A -GGAU-G-GG 421 -GAU-AA-CA G--------- ------AC-- G(-GAAA-)C -GACU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------U-U CU-A--A-GC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G CA-UA----G AA--GAAA-- ---GGGUGG- CC--UC---- 601 --(------- --UACAA--- ---)------ -----GAAA| -GCUAU--C- G--CCU---- 661 ----UAAG-- AGG---G-|G UUUGC----- -GA|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUG-AU-UC 1021 --GG-GAC-- GA-AAGG-GU --UUG-UGG( U----GAAUA -----A---) UCAU-UG-AC 1081 ---------- -------A-U U-GA-CGGU- A-CCG-A-AA A-AG--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CCA---UCUU A-AAA-GC-G UG-GGG-C(- UC-A)A-CCC -CA-U-GA-- 1321 -GGGG-AUGG A-AAC-UGGG A-AGCUG-GA GUA-----UC G-GA-GAGGA AAGUG|G-AA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUA-- ---------- ---------- ---------G 1501 ACG--AA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AUCG--- -CA----AUC 1981 -CAU-A--(- GAAA-)-UAU -G-GAGU--- UC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CGA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-U---UUC- 2281 CUG-UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-GGA-GA-G A-CC-G-CCG --CG(-GA-C AA)-CGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-U-GC -CA-ACAAAG AGA-A-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-GCGGA-C CUCAU-AAAC -GC-A-CCC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CUA-UGAG A--GU-UAG- AG-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGA GCU-GA-UG- AUU-GGAG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A32L 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A32L.. ACCESSION No information KEYWORDS No information. SOURCE clone A32L. ORGANISM clone A32L. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91455|g987760 BASE COUNT 95 a 68 c 111 g 79 t 4023 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GAUG-C-- 1201 AAG-CAUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGU- UCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CUAG--UGUU A-AAU-AU-- CG-GGG-C(- UC-A)A-CCC -CG-G-GA-- 1321 -CUGCAUUGG A-UAC-UGGC A-GACUG-GA GUG-----UG G-UA-GAGGU AAG-U|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGAAAG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA.... ...(...A-G AUAC)-CCC- ----AGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG A--UA-UU-- -------A|G -GC-GU-AGC -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UGCUG.... 1741 .....A---- --CG-(UAA- ---C)G-CG- AUAA-AUAUC C|C|G-CCU- G-AGUAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Meg.cerevi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Megasphaera cerevisiae str. VTT-E-85230. ACCESSION No information KEYWORDS No information. SOURCE Megasphaera cerevisiae str. VTT-E-85230. ORGANISM Megasphaera cerevisiae. REFERENCE 1 AUTHORS Doyle,L., McInerney,J.O., Powell,R., Haikara,A. and Moran,A .P. TITLE Sequence of the gene encoding the 16S rRNA of the beer spoilage organism Megasphaera cervisiae JOURNAL J. Indust. Microbiol. 15, 67-70 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37040|g736332 isolate_name= VTT-E-85230 BASE COUNT 364 a 318 c 422 g 254 t 3018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAA- CAA--CCU-G C-CCUC---C -AGAU-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------A-U CU-A--A-AG ---GCC-(-- --------GC 541 AU-------- -)-GAC---C UU-UA----G AA--GAAAA- ---GAUGG-- CC--ACU--- 601 --(------- ---GAAU--- ---)------ ----AGU--| --CUAU--C- G--CCG---- 661 ----GAAG-- AGG---G-|G UUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-UU-AU 1021 --GG-GAC-- GA-ACGG-GY --GUA-UGG( U----CAAUA -----C---) CCAU-AC-GC 1081 ---------- -------C-G U-GA-CGGU- A-CCG-U-AA G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-UC- 1261 G-GU-AAG|U CGG---UCUU A-AAA-GU-G CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGGG-AUUG A-AAC-UGCC G-GACUG-GA GUG-----UC G-GA-GAGGA AAG-C|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AGUG--- -CC----AGG 1981 -GAU-A--(- GAGA-)-UAU -C-CUGU--- UC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CGC-GA-AAA |---C|A--G 2161 GU-GG-UGC. ..|....... .......|.. .........U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-GAA-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-CU -UA-AUAGAG GGA-A-G-C- GAAAGG-A(G 2881 CCGA)UCCUG ---------- GA-GCAAA-C CCCAA-AAAC -AG-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCGGC. .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Meg.elsden 4376 bp RNA RNA 02-JUL-1998 DEFINITION Megasphaera elsdenii str. B159 ATCC 17752. ACCESSION No information KEYWORDS No information. SOURCE Megasphaera elsdenii str. B159 ATCC 17752. ORGANISM Megasphaera elsdenii. REFERENCE 1 AUTHORS Zhao,H., Yang,D., Woese,C.R. and Bryant,M.P. TITLE Assignment of Clostridium bryantii to Syntrophospora bryantii gen. nov., comb. nov. on the basis of a 16S rRNA sequence analysis of its crotonate-grown pure culture JOURNAL Int. J. Syst. Bacteriol. 40, 40-44 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17752 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26493 isolate_name= B159 BASE COUNT 394 a 356 c 485 g 300 t 2841 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UAUCAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----A A----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAUGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUA UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- -UU|-CG--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--CCU-G C-CCUU---C -AGAU-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------U-U CU-U--U-UU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A GA-GG----G AA--GAAA-- ---GGGAGG- ----CUC--- 601 --(------- ---UUCG--- ---)------ ----GAG--| --CUUU--C- G--CUG---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCN-GC-GU 961 G-A-AC-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UGUU-AU-AC 1021 --GG-GAC-- GA-AUGG-CG --UAG-CGG( U----CAAUA -----C---) CCGU-UA-UG 1081 ---------- -------A-G U-GA-CGGU- A-CCG-U-AA G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GC-GU- 1261 C-GU-AAG|U CGG---UCUU A-AAA-GU-G CG-GGG-C(- UU-A)A-CCC -CG-U-CA-- 1321 -GGGG-ACCG A-AAC-UGCG A-UGCUA-GA GUA-----UC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AUUG--- -CU----AUG 1981 -GAU-A--(- GAGA-)-UAU -C-CAGU--- UC-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA CG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 UG--UUAC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-GA-CU-C- A-GGA-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-CU -UA-AUAGAG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCAAA-C CCCAA-AAAC -AG-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CAU- UC-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-NGG GGC-GA-UG- AUU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.CY_69 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone CY. ACCESSION No information KEYWORDS No information. SOURCE clone CY. ORGANISM clone CY. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, cyanide-degrading consortium JOURNAL FEMS Microbiol. Ecol. 13, 225-232 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09060 BASE COUNT 131 a 119 c 150 g 96 t 3880 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... ....AAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AAAG--- -AA-----UG 1981 -CCU-A--(- GAGA-)-UAG -G-CAGUA-- -G-------- --CUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAG------- ----CA---| CUC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 YG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-AAG-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-AUG--UC -A-AGUY-AU AAU-G-GC-C CGUAU-G-UC -CU--GGGC- 2821 A-ACA-CA-C RUA--CUACA AUGGR-U-CU -AA-ACAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-C CCCAA-AAAG -GG-A-CUC- UCAGUUCGGA 2941 U-CGCAGRC- (UGCAAC-U- C)-GYCUGCG -UGAAGU-CG -GAAU-CNC- -UAGUA-AUC 3001 AU-AGM-(UC -AGCAAU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UU UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1.3 SPM.PAUCIVORANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1.3 SPM.PAUCIVORANS_SUBGROUP. ORGANISM 2.16.3.1.3 SPM.PAUCIVORANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ace.longum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetonema longum str. APO-1 DSM 6540 (T). ACCESSION No information KEYWORDS No information. SOURCE Acetonema longum str. APO-1 DSM 6540 (T). ORGANISM Acetonema longum. REFERENCE 1 AUTHORS Kane,M.D. and Breznak,J.A. TITLE Acetonema longum, gen. nov. sp. nov., an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis JOURNAL Arch. Microbiol. 156, 91-98 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 6540 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61919 isolate_name= APO-1 BASE COUNT 297 a 257 c 393 g 252 t 3177 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~......UGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--N ACNC-NUGCN U-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-NCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CA--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CNA--UCU-G C-CCUU---G -AGAN-G-GG 421 -GAC-AA-CG U--------- ------UC-- C(-GAAA-)G -GAGC-G--C UAAUACC-GA 481 AU-GUU---- ---------- -------G-U GG-A--G-AG ---AMU-(-- --------GC 541 AU-------- -)-NGU---U UC-UU----U AC--UAAA-- ---GGUGGC- CUC-UA---- 601 --(------- ---UNUN--- ---)------ -----UN-A| -GCUAC--C- A--CUC---- 661 ----AAGG-- AGG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-NA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UC 1021 --GG-GAC-- GA-AUGU-GC --GGG-UGG( U----AAAUA -----A---) UCAC-UC-GU 1081 ---------- -------A-A U-GA-CGGU- A-CC--G-AA G-GA--GGCG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUGA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GG-UU- 1261 U-AU-AAG|U CUG---UUGU G-AAA-AU-G CG-GGG-C(- UN-A)A-YCC -GU-A-GGG- 1321 --UCA-AUGG A-AAC-UGUM A-AUCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-NGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUUCUN-- ---------- ---------- ---------G 1501 ACU--GU-UA CUNACG-CUG AG-G------ -------CG- C-AAAA-GC- CA-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CUA- G-CN-GU--N 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -UCCUG-UGC 1741 NG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC N|A|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACNN -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-NGU -UUNAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUR ACA-UC|--- ---------G ---CCSR--- -AA----GAU 1981 -CCU-A--(- GAGA-)-UAG -G-GAGY--- ---------- ---YY----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----RA---| CAG-GU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CSR-- UNG-NNA|-G C-U---NG-U |GU-N(-GUN A)-GAUNU-U 2221 GG-G.(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... ...AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-NCN-NN-C GUU--CUNCN AUGGG-C-UC -UU-ANNGAG GGA-A-G-C- AA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCCAA-U CCCAA-AAAC -GA-G-AUC- UNNGUUCGGA 2941 U-CGGAGGC- (UGCNNC-U- C)-GCCUUNG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUN-CGGU.. .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.quercico 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium quercicolum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium quercicolum. ORGANISM Clostridium quercicolum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59110 BASE COUNT 401 a 323 c 464 g 296 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---GANNNNU UCAUACU-AU (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... UAC|-AU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CUUC---C -AGAU-G-GG 421 -GAC-AA-CA C--------- ------CG-- C(-GAAA-)G -UGGU-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------G-U AU-U--U-UG ---AGC-(-- --------GC 541 AU-------- -)-GCU---U GA-AA----U AG--CAAA-- ---GGUGGC- CUC-U----- 601 --(------- ---GAAG--- ---)------ ------A-U| -GCUAC--C- G--CUG---- 661 ----GAAG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-CA 1021 --AG-GGA-- GA-ACGU-GC --CUU-AUG( U----AAAUA -----A---) UGUA-AG-GC 1081 ---------- -------A-A U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GG-AA- 1261 U-AU-AAG|U CUG---UCUU A-AAA-GU-G CG-GGG-C(- UC-A)A-CCC -CG-U-GA-- 1321 -GGGG-AUGG A-AAC-UAUA U-UUCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- CA-GGG-UA- 1561 GU-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-A UC----CUN- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGG 1981 -UCU-A--(- GAGA-)-UAG -A-CGCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAC-AA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- A-UGG-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-UU -AA-AUAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCGAA-C CCCGA-AAAC -AA-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- AA-AC-ACCC -GAA-A-CCG 3121 G-CNA-C-UU -AA-CCU--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGA-G-A A-CC-GU-CU A-AGGU-GGG GCC-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spm.pauciv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporomusa paucivorans str. X DSM 3697. ACCESSION No information KEYWORDS No information. SOURCE Sporomusa paucivorans str. X DSM 3697. ORGANISM Sporomusa paucivorans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 3697 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59117 isolate_name= X BASE COUNT 386 a 334 c 469 g 299 t 2888 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUNUNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 A--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGU-NA (--GC----- ---------- ---------- 241 --------AA -)UA-ACUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CUCU---A -AACU-G-GG 421 -GAC-AA-CA C--------- ------CG-- C(-GAAA-)G -UGGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AA-C--U-UG ---GCU-(-- --------GC 541 AU-------- -)-GGC---U GA-GU----U AA--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CAUG--- ---)------ -----UA-A| -GCUAU--C- G--UUU---- 661 ----AGAG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| NGUC-GU-UU 1021 --GG-GAC-- GA-ACGU-GG --AUU-GUG( U----GAAUA -----A---) UGCA-GU--C 1081 ---------- -------A-A U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GU -G|-GA-UU- 1261 C-UU-AAG|U CCU---GUGU C-UAA-GU-A CG-GUG-C(- UC-A)A-CAC -CG-U-AUG- 1321 -GGCG-CAGG A-AAC-UGGG A-AUCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|N|G-CCU- G-GGGNGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGG 1981 -UCC-A--(- GAGA-)-UGG -A-UCCC--- UN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-U A--GCCG--- ---------- ---------- ---C(---CG ---UAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----UGGU|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-UU -AA-ACAAAG UGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-A CACAU-AAAC -AA-G-CUC- UCAGUUCGGA 2941 U-CGGAGGC- (UGCAAC-U- C)-GCCUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CCA--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAAC-U-A G-CC-GU-CU A-AGGU-GGG GCC-GA-UG- AUC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spm.termit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporomusa termitida str. JSN-2. ACCESSION No information KEYWORDS No information. SOURCE Sporomusa termitida str. JSN-2. ORGANISM Sporomusa termitida. REFERENCE 1 AUTHORS Kane,M.D. and Breznak,J.A. TITLE Acetonema longum gen. nov. sp. nov, an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis JOURNAL Arch. Microbiol. 156, 91-98 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M61920 isolate_name= JSN-2 BASE COUNT 348 a 298 c 431 g 268 t 3031 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UAUUGG CGCGUU(U-N A)N-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUN---UA (--GC----- ---------- ---------- 241 --------AA -)UA-ACUNC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CUCU---U -AGCU-G-GG 421 -GAC-AA-CA C--------- ------CG-- C(-GAAA-)G -UGGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AA-C--U-CG ---GUU-(-- --------GC 541 AU-------- -)-AAC---G GA-GU----U AA--GAAA-- ---GAUGG-- CCA-CU---- 601 --(------- ---CUAA--- ---)------ -----AG-A| -ACUAU--C- G--CUA---- 661 ----AGAG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -A-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-GU-UU 1021 --GG-GAC-- GA-ACGU-NG --YCU-AUG( U----GAAUA -----A---) URUA-GA-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UCG-GU -G|-GC-CU- 1261 G-GU-AAG|U CGU---GUGU C-UAA-GU-G CG-AAG-C(- UC-A)A-CUU -CG-U-AUG- 1321 -GGCG-CAGG A-AAC-UGUC C-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-N--CN-AG CGGUGG-CGU C-U-GU-NGU -UUAAUU-AG -(ANGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UU|--- ---------G ---AGCG--- -AA----AGG 1981 -UUC-A--(- GAGA-)-UGA -A-UCCC--- UA-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----UA---| CGC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G A-U---AG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-AA-CU-C- --NAG-GG-A G-CU-G-CGG --CA(-NGAG AA)-UGC-G- -GUGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUAAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGG-C-UU -AN-ACAAAG CGA-A-G-C- AA-GCC-U(G 2881 -CGA)AGGU- ---------- AA-GCAAA-A CGCAG-AAAU -AA-G-CUC- UCRGUUCGGA 2941 N-GGCAGGC- (UGCAAC-U- C)-GCCUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG.(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spm.silvac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporomusa silvacetica str. DG-1 DSM 10669 (T). ACCESSION No information KEYWORDS No information. SOURCE Sporomusa silvacetica str. DG-1 DSM 10669 (T). ORGANISM Sporomusa silvacetica. REFERENCE 1 AUTHORS Kuhner,C.H., Frank,C., Griesshammer,A., Schmittroth,M., Acker,G., Gossner,A. and Drake,H.L. TITLE Sporomusa silvacetica sp. nov., an acetogenic bacterium isolated from aggregated forest soil JOURNAL Int. J. Syst. Bacteriol. 47, 352-358 (1997) STANDARD No information COMMENTS Organism information Culture collection: DSM 10669 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y09976|g1743395 isolate_name= DG-1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 389 a 329 c 462 g 298 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GNNUC-CA (--NC----- ---------- ---------- 241 --------AA -)UG-GAUAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGA- CAA--CCU-G C-CUCU---A -AAUU-G-GG 421 -GAC-AA-CA C--------- ------CG-- C(-GAAA-)G -UGGU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------G-U AU-C--U-UG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U GA-GA----U AA--GAAA-- ---GGUGGC- CUC-UG---- 601 --(------- -----AA--- ---)------ -----UA-U| -GCUAC--C- G--AUU---- 661 ----AGAG-- AUG---G-|G UCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-GU-UU 1021 --GG-GAC-- GA-ACGU-GG --GAU-GUG( U----GAAUA -----A---) UGCA-UU-CU 1081 ---------- -------A-A U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GU -G|-GA-UC- 1261 U-UU-AAG|U CGU---GUGU C-UAA-GU-G CG-AGG-C(- UC-A)A-CCU -CG-U-AUA- 1321 -GGCG-CAGG A-AAC-UGGU U-AUCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- CA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CAA--- --GC-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AAA 1981 -CUA-A--(- GAGA-)-UUA -G-UUCC--- UAU------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---AUA---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- A-AGG-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGG-C-UU -AA-ACAAAG CGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGGU- ---------- AA-GCAAA-A CGCAU-AAAC -AA-G-CUC- UCAGUUCGGA 2941 U-CGGAGGC- (UGCAAC-U- C)-GCCUCCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGA- CA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CCA--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAAC-U-A G-CC-GU-CU A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1.4 PHA.FAECIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1.4 PHA.FAECIUM_SUBGROUP. ORGANISM 2.16.3.1.4 PHA.FAECIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aam.ferme3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidaminococcus fermentans str. VR4 DSM 20731 (T). ACCESSION No information KEYWORDS No information. SOURCE Acidaminococcus fermentans str. VR4 DSM 20731 (T). ORGANISM Acidaminococcus fermentans. REFERENCE 1 AUTHORS Cook,G.M., Rainey,F.A., Chen,G., Stackebrandt,E. and Russell ,J.B. TITLE Emendation of the description of Acidaminococcus fermentans, a trans-aconitate-and citrate-oxidizing bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 576-578 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20731 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78017 DSM 20731 (T) = ATCC 25085 isolate_name= VR4 biol_source= pig gut BASE COUNT 385 a 349 c 473 g 307 t 2862 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAACUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUGUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-N C-CCCU---C -UGUU-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GGAU-G--C UAAUACC-GA 481 AU-GAG---- ---------- -------A-U CC-U--C-UU ---UCC-(-- --------GC 541 AU-------- -)-GGA---G AG-AG----G AU--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUAU--C- G-CCA----- 661 ----GAAG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUN-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAC-- GA-AAGC-AC --CGA-UCU( A----UAAUA -----C---) AUUU-UG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CCG---ACGU G-AAA-AU-G CG-GGG-C(- UU-A)A-CCC -CG-U-AUG- 1321 --GCG-UUGG A-UAC-UGGA A-GUCUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGA 1981 -CCC-A--(- GAGA-)-UGG -G-UCCC--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -CA-ACAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-ACC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CU-GU-CU A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUUC G(AGA-A)CG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aam.ferme2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidaminococcus fermentans str. AO. ACCESSION No information KEYWORDS No information. SOURCE Acidaminococcus fermentans str. AO. ORGANISM Acidaminococcus fermentans. REFERENCE 1 AUTHORS Cook,G.M., Rainey,F.A., Chen,G., Stackebrandt,E. and Russell ,J.B. TITLE Emendation of the description of Acidaminococcus fermentans, a trans-aconitate-and citrate-oxidizing bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 576-578 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77951 isolate_name= AO BASE COUNT 382 a 346 c 468 g 304 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAACUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUGUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-N C-CCCU---C -UGUU-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GGAU-G--C UAAUACC-GA 481 AU-GAG---- ---------- -------A-U CC-U--C-UU ---UCC-(-- --------GC 541 AU-------- -)-GGA---G AG-AG----G AU--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| -GCUAU--C- G-CCA----- 661 ----GAAG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUN-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAC-- GA-AAGC-AC --CGA-UCU( A----UAAUA -----C---) AUUU-UG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GG-CU- 1261 U-UU-AAG|U CCG---ACGU G-AAA-AU-G CG-GGG-C(- UU-A)A-CCC -CG-U-AUG- 1321 --GCG-UUGG A-UAC-UGGA A-GUCUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGA 1981 -CCC-A--(- GAGA-)-UGG -G-UCCC--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUA- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---NA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 --GA-CU-C- A-UAG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -CA-ACAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-ACC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CU-GU-CU A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-GNUC G(AGA-A)CG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aam.fermen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acidaminococcus fermentans str. VR4 ATCC 25085. ACCESSION No information KEYWORDS No information. SOURCE Acidaminococcus fermentans str. VR4 ATCC 25085. ORGANISM Acidaminococcus fermentans. REFERENCE 1 AUTHORS Both,B., Buckel,B., Kroppenstedt,R. and Stackebrandt,E. TITLE Phylogenetic and chemotoxonomic studies on acidaminococcus fermentans JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25085 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X65935 ATCC 25085 = DSM 20731 (T) isolate_name= VR4 biol_source= pig gut BASE COUNT 374 a 339 c 460 g 288 t 2915 others ORIGIN 1 .......... .......... .......... .....NUUGG AGAGNN(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- NGGC-GGC-G -UGC-NN--A ACAC-AUGCU A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAACUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGGUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGN- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-N C-CUNU---C -UGUU-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GGAU-G--C UAAUACC-GA 481 AU-GAG---- ---------- -------A-U CC-U--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GGA---G AG-AG----G AU--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CUUG--- ---)------ -----UA-A| --NUAU--C- G--CA----- 661 ----GAAG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UNU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCA -CNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAC-- GA-AAGC-AC --CGA-UCU( A----UAAUA -----C---) AUUU-UG-GU 1081 ---------- -------G-U U-GA-CGGU- A-CCU-N-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GC-NN- 1261 U-UA-ANG|U CCG---ACGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AUG- 1321 --GCG-UUGG A-UAC-GGAA G-UCNUN-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAN- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -N-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -NNCUG-UGC 1741 CG--GA---- --GN-(GAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|--- ---------G ---AGUG--- -AA----AGA 1981 -CCC-A--(- GAGA-)-UGG -G-NCCC--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CAC-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UC--CUA- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- A-UAG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-N- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -CA--CAAAG GGC-A-G-C- GA-AG--C(G 2881 -CGA)GGCG- ---------- GA-GCCAA-U CCCAG-AAAC -CC-G-ACC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CU-GU-CU A-AGGU-GGG GCC-GA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Scl.rumini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Succiniclasticum ruminis str. SE10 DSM 9236 (T). ACCESSION No information KEYWORDS No information. SOURCE Succiniclasticum ruminis str. SE10 DSM 9236 (T). ORGANISM Succiniclasticum ruminis. REFERENCE 1 AUTHORS van Gylswyk,N.O. TITLE Succiniclasticum ruminis gen. nov., sp. nov., a ruminal bacterium converting succinate to propionate as the sole energy-yielding mechanism JOURNAL Int. J. Syst. Bacteriol. 45, 297-300 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9236 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81137|g871547 isolate_name= SE10 BASE COUNT 365 a 367 c 487 g 282 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUUUU-GU (--UU----- ---------- ---------- 241 --------CG -)GC-AGAAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCCC---C -GGAU-U-GG 421 -GAC-AA-CA C--------- ------CC-- C(-GAAA-)G -GGGU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------A-A GA-U--A-GC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G UU-AU----U UU--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---UUUA--- ---)------ -----UA-A| -GCUAU--C- G--CCG---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GU|----CC G--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A G-GAA--G-U UC(--UU-CG --)GA-ACGU AAA--GCCC| UGUU-GU-AC 1021 --AU-GAC-- GA-ACGU-GC --UUU-CUA( U----CAACA -----A---) CGGG-AA-GC 1081 ---------- -------A-A U-GA-CGGU- A-GUG-U-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- AUG-UAG-GC -G|-GC-GC- 1261 C-UU-AAG|U CUG---UCGU G-AAA-CU-G CG-GGG-C(- CU-A)A-CCC -CG-U-AUG- 1321 --GCG-AUGG A-AAC-UGGG G-CACUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 CU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------G ---AUUG--- -AA----GGN 1981 --GU-A--(- GAGA-)-UAC -N-CCCC--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAU-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCA- 2281 UG--UUAC-C AU-CA----- ---------- ---------- ----(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -CA-ACAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-C CCCAU-AAAC -CC-G-GUC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU N-NGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pha.faeci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phascolarctobacterium faecium. ACCESSION No information KEYWORDS No information. SOURCE Phascolarctobacterium faecium. ORGANISM Phascolarctobacterium faecium. REFERENCE 1 AUTHORS Del Dot,T., Osawa,R. and Stackebrandt,E. TITLE Phascolarctobacterium faecium gen. nov, spec. nov., a novel taxon of the Sporomusa group of bacteria JOURNAL Syst. Appl. Microbiol. 16, 380-384 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72865|g453433 BASE COUNT 395 a 339 c 474 g 300 t 2868 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GNAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAUUUU-AU (--UU----- ---------- ---------- 241 --------CG -)GU-AGAAU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-A C-CCUU---U -AGAC-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-U CA-U--C-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A GG-AU----G AA--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CAAG--- ---)------ -----UA-A| -GCUAU--C- G--CUA---- 661 ----AAGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G AU(--UU-CG --)GU-CUGU AAA--GCUC| UGUU-GU-UU 1021 --AU-GAC-- GA-ACGU-GC --AGU-GUG( U----GAACA -----A---) UGCA-UU-GC 1081 ---------- -------A-A U-GA-CGGU- A-GUA-A-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GC-UU- 1261 A-AU-AAG|U CGA---GCGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AUG- 1321 --GCG-CUGG A-AAC-UGUU A-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|--- ---------G ---AUUG--- -AA----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUA- 2281 UG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -AA-ACAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCA- ---------- GA-GCAAA-C CCCAG-AAAC -CC-G-AUC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -AUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGN GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pha.faeci3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phascolarctobacterium faecium. ACCESSION No information KEYWORDS No information. SOURCE Phascolarctobacterium faecium. ORGANISM Phascolarctobacterium faecium. REFERENCE 1 AUTHORS Del Dot,T., Osawa,R. and Stackebrandt,E. TITLE Phascolarctobacterium faecium gen. nov, spec. nov., a novel taxon of the Sporomusa group of bacteria JOURNAL Syst. Appl. Microbiol. 16, 380-384 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72866|g457409 BASE COUNT 385 a 324 c 461 g 298 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-G.. .......... .......... .......... ....-..... .......... 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAUUUU-AU (--UU----- ---------- ---------- 241 --------CG -)GU-AGAAU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-A C-CCUU---U -AGAC-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-U CA-U--C-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A GG-AU----G AA--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CAAG--- ---)------ -----UA-A| -GCUAU--C- G--CUA---- 661 ----AAGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G AU(--UU-CG --)GU-CUGU AAA--GCUC| UGUU-GU-UU 1021 --AU-GAC-- GA-ACGU-GC --AGU-GUG( U----GAACA -----A---) UGCA-UU-GC 1081 ---------- -------A-A U-GA-CGGU- A-GUA-A-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GC-UU- 1261 A-AU-AAG|U CGA---GCGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AUG- 1321 --GCG-CUGG A-AAC-UGUU A-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GNC-C---(C CAA)---G-N UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UU|--- ---------G ---AUUG--- -NA----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUA- 2281 UG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -AA-ACAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCA- ---------- GA-GAAAA-C CCCAG-AAAC -CC-G-AUC- UCAGUUCGGA 2941 U-CGNAGGU- (UGCAAC-C- C)-GCCUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-NGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -AUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG GAC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUNA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pha.faeci4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phascolarctobacterium faecium. ACCESSION No information KEYWORDS No information. SOURCE Phascolarctobacterium faecium. ORGANISM Phascolarctobacterium faecium. REFERENCE 1 AUTHORS Del Dot,T., Osawa,R. and Stackebrandt,E. TITLE Phascolarctobacterium faecium gen. nov, spec. nov., a novel taxon of the Sporomusa group of bacteria JOURNAL Syst. Appl. Microbiol. 16, 380-384 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72867|g457170 BASE COUNT 401 a 347 c 487 g 312 t 2829 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAAUUUU-AU (--UU----- ---------- ---------- 241 --------CG -)GU-AGAAU UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-A C-CCUU---U -AGAC-G-GG 421 -GAC-AA-CA U--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GG 481 AU-GUG---- ---------- -------A-U CA-U--C-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A GG-AU----G AA--GAAA-- ---GAUGGC- CUC-UA---- 601 --(------- ---CAAG--- ---)------ -----UA-A| -GCUAU--C- G--CUA---- 661 ----AAGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAC-GG) -A-CUACC-A A|-GGC-GA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G AU(--UU-CG --)GU-CUGU AAA--GCUC| UGUU-GU-UU 1021 --AU-GAC-- GA-ACGU-GC --AGU-GUG( U----GAACA -----A---) UGCA-UU-GC 1081 ---------- -------A-A U-GA-CGGU- A-GUA-A-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- AUG-UAG-GC -G|-GC-UU- 1261 A-AU-AAG|U CGA---GCGU G-AAA-AU-G CG-GGG-C(- UC-A)A-CCC -CG-U-AUG- 1321 --GCG-CUGG A-AAC-UGUU A-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-GU CUGACG-CUG AG-A------ -------UG- C-GAAA-GC- CA-GGG-UA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UU|--- ---------G ---AUUG--- -AA----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUA- 2281 UG--UUAC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-UGG-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -AA-ACAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCA- ---------- GA-GAAAA-C CCCAG-AAAC -CC-G-AUC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -AUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGG--UG GAUCACCUCC 3361 UUCU|UU~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.1.5 ENVIRONMENTAL_BANGOMBE_CLONES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.1.5 ENVIRONMENTAL_BANGOMBE_CLONES. ORGANISM 2.16.3.1.5 ENVIRONMENTAL_BANGOMBE_CLONES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G43 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone G43.. ACCESSION No information KEYWORDS No information. SOURCE clone G43. ORGANISM clone G43. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Diversity and distribution of subterranean bacteria in groundwater at Oklo in Gabon, Africa, as determined by 16S rRNA gene sequencing JOURNAL Mol. Ecol. 5, 427-436 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91295|g987043 BASE COUNT 81 a 76 c 127 g 64 t 4028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGM|G UAAA-GGGC- GHG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U GGA---GUGU G-AAA-UC-- SA-CGG-C(- UC-A)A-CCG -UG-C-AAC- 1321 -UGCG-CUUC A-AAC-UGGC G-GGCUU-GA GGU-----CA G-GA-GAGGG AAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUGUC C|C|G-CCU- G-GG...... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G31 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91283|g987031 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 88 a 79 c 119 g 65 t 4025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......UAGG |-GAUC-C-- 1201 GAG-CGUUAU CC--GAUUCA -CU-GGGC|G UAAAAGCGC- GUG-CAG-GC -G|-GU-CU- 1261 G-GU-AAG|U UGG---AUGC G-AAA-UC-U CC-UGG-C(- UC-A)AACUG -GG-A-GGGG 1321 -ACCG-UUCA A-UAC-UGUC A-GACUA-GA GGG-----CG A-CA-GAGGA AGG-U|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 GUC--GC-AC CUGACG-CUC AG-A------ -------CG- C-GAAA-GC- UA-GGG-GAA 1561 GC-GAA-CG- -GG(AUUA-G AAAC)-CCC- ----GGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGU A--GA-CU-- -------U|G -GU-GU-CGG -UG-GG---- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- -------UCC -GCCGG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CG- AUAA-GUCUA C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91290|g987038 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 69 a 52 c 83 g 56 t 4116 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. ........CC A-AAA-GA-C CA-UGG-C(- UC-A)A-CUA -UG-G-AUU- 1321 -GAGU-UGCA A-UAC-UGCU U-UUCUU-GA GGA-----CC A-GA-GAGGA AAA-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUU-CUG-- ---------- ---------- ---------G 1501 CUG--GU-UU CUGACG-CUG AG-G------ -------AN- N-NAAA-GC- CA-GGG-GA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-AUGG A--CA-CU-- -------A|G -GU-GU-GGG -UG-G----- -U-------- 1681 -(GUU-AA)A G--------- ---------- ---------- --------CC -NNCUG-UGC 1741 CG--CA---- --GU-(AA-- --CC)--CA. .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.2 HELIOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.2 HELIOBACTERIUM_GROUP. ORGANISM 2.16.3.2 HELIOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.2.1 DFI.DEHANLOGENANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.2.1 DFI.DEHANLOGENANS_SUBGROUP. ORGANISM 2.16.3.2.1 DFI.DEHANLOGENANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfi.hafnie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfitobacterium hafniense str. DCB-2. ACCESSION No information KEYWORDS No information. SOURCE Desulfitobacterium hafniense str. DCB-2. ORGANISM Desulfitobacterium hafniense. REFERENCE 1 AUTHORS Christiansen,N. and KlaerAhring,B. TITLE Desulfitobacterium hafniense sp. nov., an anaerobic, reductively dechlorinating bacterium JOURNAL Int. J. Syst. Bacteriol. 46, 442-448 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94975 isolate_name= DCB-2 BASE COUNT 394 a 345 c 485 g 301 t 2851 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- NGGC-GUC-G -UGC-CU--C ACAC-AUGCG A-GUC-GAGC 121 G--GA----- -----GAGCU CAA------- ---------- ---------- ---------- 181 ---------- ---------- -----UA-AU (--AG----- ---------- ---------- 241 --------UU -)CU-UA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA GAGUUC---- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-A C-CUAG---U -AGAC-C-GG 421 -GAC-AA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--C UAAUACC-GG 481 AU-NAG---- ---------- -------C-U UA-A--U-UA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U GA-UU----A AG--GAAA-- ---GAUGGC- CUC-U----- 601 --(------- ---GAAG--- ---)------ ------A-U| -GCUAU--C- G--UUA---- 661 ----GUAG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AC-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UGUC-UU-CA 1021 --GG-GAC-- GA-ACGG-UA --AGU-AUG( U----AAAGA -----A---) UGUA-CU-UA 1081 ---------- -------C-A U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CUG---GUGU G-AAA-AC-C UA-GGG-C(- UC-A)A-CCC -UG-G-GAC- 1321 -UGCA-UCGG A-AAC-UGGG U-AUCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- CUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCU 1981 -UGG-G--(- GAAA-)-CNN -G-NGAG--- UGC------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-U AA-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAC GGA-A-G-C- GA--GC-C(G 2881 -UGA)GGUG- ---------- AA-GCCAA-U CCGAG-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfi.frappi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfitobacterium frappieri str. PCP-1. ACCESSION No information KEYWORDS No information. SOURCE Desulfitobacterium frappieri str. PCP-1. ORGANISM Desulfitobacterium frappieri. REFERENCE 1 AUTHORS Bouchard,B., Beaudet,R., Villemur,R., McSween,G., Lepine,F. and Bisaillon,J.G. TITLE Isolation and characterization of Desulfitobacterium frappieri sp. nov., an anaerobic bacterium which reductively dechlorinates pentachlorophenol to 3-chlorophenol JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1010-1015 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U40078|g1648960 legacy_attribute= 3-chlorophenol. legacy_attribute= generate legacy_attribute= pentachlorophenol in ortho-, para-, and meta- positions to legacy_attribute= dehalogenates legacy_attribute= pentachlorophenol only in ortho-position; PCP-1 legacy_attribute= dehalogenate legacy_attribute= Number L28946), another anaerobic bacterium that can legacy_attribute= Accession legacy_attribute= sequence of Desulfitobacterium dehalogenans (GenBank legacy_attribute= PCP-1 16S rRNA gene sequence is similar to the 16S rRNA gene isolate_name= PCP-1 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 431 a 374 c 522 g 328 t 2721 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----- -----CCAGU GUCUAACACC -G-AGUGUUU -A-AGGAGC- AGAUAA-GUG 181 -GA-UGACA- GCGA------ ---GAGC-GC (--GAAGA-- ---------- ---------- 241 ------AUGA -)GC-GCUC- ---------- --CACGCAUU CAAUAAG-UG UCA-A-CAC- 301 A-GCUUCU-G -GAAUGCU-G -GGUGUUAGA UGCUGG---- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-A C-CUAG---U -AGAC-C-GG 421 -GAC-AA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--C UAAUACC-GG 481 AU-GAG---- ---------- -------C-U UA-A--U-CG ---GUG-(-- --------GC 541 AU-------- -)-CAC---U GA-UU----A AG--GAAA-- ---GAUGGC- CUC-U----- 601 --(------- ---GAAA--- ---)------ ------A-U| -GCUAU--C- G--UUA---- 661 ----GUAG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AC-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UGUC-UU-CA 1021 --GG-GAC-- GA-ACGG-UA --AGU-AUG( U----AAAUA -----A---) UGUA-CU-UA 1081 ---------- -------C-A U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U CUG---GUGU G-AAA-AC-C UA-GGG-C(- UC-A)A-CCC -UG-G-GAC- 1321 -UGCA-UCGG A-AAC-UGGG U-AUCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- CUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCC 1981 -UGU-G--(- GAAA-)-CAU -G-GGAG--- UGC------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-U AA-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAC GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- AA-GCCAA-U CCGAG-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfi.dehalo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfitobacterium dehalogenans str. JW/IU-DC1 DSM 9161. ACCESSION No information KEYWORDS No information. SOURCE Desulfitobacterium dehalogenans str. JW/IU-DC1 DSM 9161. ORGANISM Desulfitobacterium dehalogenans. REFERENCE 1 AUTHORS Utkin,I., Woese,C.R. and Wiegel,J. TITLE Isolation and characterization of Desulfitobacterium dehalogenans gen. nov., sp. nov., an anerobic bacterium which reductively dechlorinates chlorophenolic compounds JOURNAL Int. J. Syst. Bacteriol. 44, 612-619 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 9161 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L28946 isolate_name= JW/IU-DC1 BASE COUNT 378 a 341 c 467 g 298 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- -----GAACU CAA------- ---------- ---------- ---------- 181 ---------- ---------- -----UA-AG (--CU----- ---------- ---------- 241 --------UN -)NY-UA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA CAUUAC---- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-A C-CCAA---U -AGAC-C-GG 421 -GAC-AA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--C UAAUACC-GN 481 AU-AAG---- ---------- -------C-U UA-U--C-CC ---AUG-(-- --------GC 541 AU-------- -)-CAU---G GN-AU----A AG--GAAA-- ---GAUGGC- CUC-U----- 601 --(------- ---GAAY--- ---)------ ------A-U| -GCUAU--C- G--UUA---- 661 ----AUGG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AC-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UGUC-UU-CA 1021 --GG-GAC-- GA-ACGG-CA --GGU-AUG( A----AAAUA -----U---) UGUA-CU-UG 1081 ---------- -------C-A U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUGU CC-GNAAUCA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UG- 1261 A-UU-AAG|U CUG---GUGU G-AAA-AC-C UA-GGG-C(- UC-A)A-CCC -UG-G-GNC- 1321 -UGCA-UCGG A-AAC-UGGU U-AUCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUNC)-CCU- ----GGUN-G UC----CAC- G-CC-NN--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -CUCUG-UGC 1741 CG--CA---- --GU-(UNA- ---C)N-CA- CUNA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCC 1981 -CGU-G--(- GAAA-)-CAU -G-GGNG--- UGC------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UC ---ARG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAC GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfi.spPCE1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfitobacterium sp. str. PCE1. ACCESSION No information KEYWORDS No information. SOURCE Desulfitobacterium sp. str. PCE1. ORGANISM Desulfitobacterium sp. REFERENCE 1 AUTHORS Gerritse,J., Renard,V., Pedro Gomes,T.M., Lawson,P.A., Collins,M.D. and Gottschal,J.C. TITLE Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols JOURNAL Arch. Microbiol. 165 (2), 132-140 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81032|g886474 Former RDP Sids: Dfm.sp_11 isolate_name= PCE1 NB: former name Desulfotomaculum sp. BASE COUNT 366 a 332 c 444 g 282 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... ..GU---AAC -GC-GUGGA- UAA--CCU-A C-CCAA---U -AGAC-C-GG 421 --AC-AA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-U UA-U--C-CC U--AUG-(-- --------GC 541 AU-------- -)-CAU---G GG-AU----A AG--GAAA-- ---GAUGGCC AUC-U----- 601 --(------- ---GAAUU-- ---)------ ------A-U| -GCUAU--C- G--UUA---- 661 ----AUGG-- AUG---G-|A UCCGC----- -GU|----CU GC-AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACC)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AC-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUAC| UGUC-UU-CA 1021 --GG-GAC-- GA-ACGG-CA --GGU-AUG( A----AAAUA -----U---) UGUA-CU-UG 1081 ---------- -------C-A U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GA-UG- 1261 A-UU-AAG|U CUG---GUGU G-AAA-AC-C UA-GGG-C(- UC-A)A-CCC -UG-G-GAC- 1321 -UGCA-UCGG A-AAC-UGGU U-AUCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GUAGGG-GA- 1561 GC-AAA-CA- -GG(ACUA-G AUAC)-CCU- ----GGUA-G UCCCCCCAC- GUCC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- CUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AUAG--- -AA----UCC 1981 -CGU-G--(- GAA--)-CAU -G-GGAG--- UGC------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CUA-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ----(---GU ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAC GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CUG- CA-AC-GCCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Syp.glycol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Syntrophobotulus glycolicus str. SlGlym. ACCESSION No information KEYWORDS No information. SOURCE Syntrophobotulus glycolicus str. SlGlym. ORGANISM Syntrophobotulus glycolicus. REFERENCE 1 AUTHORS Friedrich,M., Springer,N., Ludwig,W. and Schink,B. TITLE Phylogenetic position of Desulfofustis glycolicus gen. nov. sp. nov. and Syntrophobotulus glycolicus gen. nov. sp. nov. two new strict anaerobes growing with glycolic acid JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X99706|g1490394 isolate_name= SlGlym NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 409 a 341 c 491 g 314 t 2821 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAUU-GA (--GGAAGCU ---------- ---------- 241 ----UGCGAA -)UU-GAUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- UUC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G U-CCUC---A -UGAC-C-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUGCC-GG 481 AU-AAG---- ---------- -------C-U UU-U--G-GU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A CC-GG----A AG--GAAA-- ---GCUGGC- CUC-U----- 601 --(------- ---GAU---- ---)------ ------A-U| -GCUAG--U- G--CAA---- 661 ----GAGG-- GUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----AA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--GUAC| UGUU-GU-CA 1021 --GG-GAC-- GA-ACCG-UA --UAU-GUG( U----AAAUA -----A---) UGCA-UA-UA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-UG- 1261 U-AU-AAG|U CUG---AUGU G-AAA-GU-G CG-GAG-C(- UU-A)A-CUC -CG-U-AAA- 1321 --GCA-UUGG A-AAC-UGUA C-GGCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------U ---ACAG--- -AA----UCC 1981 -CGA-A--(- GAGA-)-UUC -G-GGAG--- UGC------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CUG-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--UUU- 2281 AG--UUAC-U AA-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-GA-CU-C- U-AGA-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAGAC GGA-A-G-C- GA-AGC-C(G 2881 -AGA)GGUG- ---------- GA-GCAAA-U CCGAG-AAAG -CC-C-GUU- CUAGUUCGGA 2941 U-UGAUCUC- (UGCAAC-U- C)-GAGAUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AC)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GACUACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A49u 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A49u.. ACCESSION No information KEYWORDS No information. SOURCE clone A49u. ORGANISM clone A49u. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91472|g987777 BASE COUNT 94 a 70 c 124 g 70 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GG-UA- 1261 U-UU-AAG|U CCG---GUGU G-AAA-GA-U CA-GGG-C(- UC-A)A-CCC -UG-A-GAG- 1321 -UGCA-UCGG A-AAC-UGGG U-AUCUU-GA GGA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UG. 1741 .......... .....(.AA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.orient 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum orientis str. Singapore I NCIMB 8382. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum orientis str. Singapore I NCIMB 8382. ORGANISM Desulfotomaculum orientis. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34417 isolate_name= Singapore I BASE COUNT 301 a 252 c 386 g 253 t 3184 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.UUUUUUGG AGAGUU(U-G R)U-CCU|-G 61 GCUCAG-GAN -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AA---UUGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GACAA---- UUS|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCAU---A -AAKC-C-GG 421 -GAC-AA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--C UAAUACC-GG 481 AU-AUC---- ---------- -------U-U -A-G--A-UY ---YUG-(-- --------GC 541 AU-------- -)-CAG---G AY-UU----A AG--GAAA-- ---GAUGGC- CUC-UG---- 601 --(------- -----AA--- ---)------ -----CA-U| -GCUAU--C- G--AUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCN-GC-GU 961 G-U-AU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUAC| UGUC-AG-UG 1021 --UG-GGG-- AC-G-GU-GC --UNU-UUG( A----AAAUA -----U---) UGAG-GA-GA 1081 ---------- -------C-A U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A A........( .......... .........) .......... |......... 1201 .......... .C-GGAAUUA -CU-GGGC|G UNAA-GGGC- GCG-UNG-GC -G|-GA-UG- 1261 C-UU-AAG|U CCK---GUGU G-AAA-GA-U CA-GGG-C(- UC-A)A-CCC -UN-A-GAG- 1321 -UGCA-UUCG G-UA------ -----AU-GG GUA-----UU G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -C-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGA -GG-G----- -U-------- 1681 -(AUC-NN)C A--------- ---------- ---------- --------CN -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU........ .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .....G---| CUG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---UG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UA--UUU- 2281 AG--UUGC-U AC-GAG---- ---------- ---------- ----(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CN-CU-C- U-AGA-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C NUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCGAG-AAAG -CC-G-GUC- UCRGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pep.niger 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptococcus niger.. ACCESSION No information KEYWORDS No information. SOURCE Peptococcus niger. ORGANISM Peptococcus niger. REFERENCE 1 AUTHORS ,K.H. Ludwig,W., Weiznegger,M., Dorn,S., Andreesen,J. and Schleifer TITLE rRNA sequence studies The phylogenetic position of Peptococcus niger based on 16S JOURNAL FEMS Microbiol. Lett. 71, 139-144 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55797 BASE COUNT 357 a 330 c 435 g 281 t 2973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- -----CGAGG AAAGAGAC-- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --UGACCUUU CCCGAG---- ---|-UU--- AGUG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUGAG- UGA--CCU-G C-CCAG---C -AGUG-G-GG 421 -AAU-AA-CA G--------- ------UG-- A(-GAAA-)U -CAUU-G--C UAAUACC-GC 481 AU-AUC---- ---------- -------U-U AC-A--A-GU ---GCU-(-- --------UC 541 AU-------- -)-GGU---A CC-UG----U AA--GAAA-- ---GACGGC- ---------- 601 --(------- --CUUCGU-- ---)------ ---------| -GCUGU--C- G--CUG---- 661 ----UUGG-- AUG---G-|A CUCGC----- -GU|----CU G--AUUA-G- CCA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-AGC-AA- UGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--ACUC| UGUC-CU-CA 1021 --UC-CAA-- GA-GAGG-GG --AAG-GUA( G----UAAC- -----U---) GACC-UUUCC 1081 ---------- -------A-G --GA-CGGU- A-GAU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-GG-U UA-GGG-C(- UC-A)A-CCC -UG-A-ACG- 1321 -UGCA-UCUG A-UAC-UGGC A-GACUU-GA GUA-----UG G-AA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGG -AG-GUU--- ---------- 1681 -(-UC-AA)- ---------- ---------- -G-------- -------ACC -GUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UC|--- ---------C ---UGCU--- GCC----GAG 1981 -UGA-U--(- GUAAU)-GUC -A-CUUUU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| AGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAC-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCCAA-U CUCAC-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-GCG- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CG.. ........G- UA-AC-ACCC -G........ 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A50u 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A50u.. ACCESSION No information KEYWORDS No information. SOURCE clone A50u. ORGANISM clone A50u. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91473|g987778 BASE COUNT 93 a 74 c 121 g 70 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UA- 1261 A-UU-AAG|U CAG---GUGU G-AAA-AC-U CU-GGG-C(- UC-A)A-CCC -AG-A-GAC- 1321 -UGCA-CCUG A-UAC-UGGA U-AACUU-GA GUG-----CA G-GA-GAGGA CAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UG. 1741 .......... .....(.AA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.3.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.3.2.2 HEL.CHLORUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.3.2.2 HEL.CHLORUM_SUBGROUP. ORGANISM 2.16.3.2.2 HEL.CHLORUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.rumin1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum ruminis str. DL NCIMB 8452. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum ruminis str. DL NCIMB 8452. ORGANISM Desulfotomaculum ruminis. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria. JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34418 legacy_attribute= Dave Stahl (Devereux) sequence isolate_name= DL BASE COUNT 340 a 285 c 420 g 267 t 3064 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUAUGG AGAGUU(U-R G)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G UU---UAAAA UGAA------ ---------- ---------- ---------- 181 ---------- ---------- --------AC (--CU----- ---------- ---------- 241 --------N- -)GU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA UUUUUR---- AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G G-CGGA---U -AGAC-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CC-U--A-GG ---AAC-(-- --------GC 541 AU-------- -)-GUU---C UA-AG----G AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----ACCG-- AUG---G-|A UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-GU-( GU-AAC-GG) -A-CCCCU-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA GGGA|-GCAA CGCN-GC-GU 961 G-A-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCUC| UGUC-UU-AA 1021 --GG-GAA-- GA-A------ ---------( -----CAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A .........( .......... .........) .......... |......... 1201 ..G-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GU -G|-GU-GC- 1261 A-UU-AAG|U UAG---AGGU G-AAA-GU-G CC-GGG-C(- NN-A)A-CCC -CG-U-GA-- 1321 -GGCC-UCUG A-UAC-UGGU G-GACUU-GA GUG-----CA G-GA-GAGGG GAG-C|AGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNNUCUN-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-CC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(AUC-GA)C C--------- ---------- ---------- -------ACC -CCCAG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C --GUCUN--- -AA----AAG 1981 -UAU-A--(- GGGA-)-UAU -A-CUCU--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GGN------- ----NA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-AC--AUU- 2281 CG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- G-AAU-GU-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACN-CG-C GUA--CUACN AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- AA-GCAAA-U CUGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGGGGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.rumin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum ruminis str. DL NCIMB 8452. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum ruminis str. DL NCIMB 8452. ORGANISM Desulfotomaculum ruminis. REFERENCE 1 AUTHORS Devereux,R., Delaney,M., Widdel,F. and Stahl,D.A. TITLE Natural relationships among sulfate-reducing eubacteria JOURNAL J. Bacteriol. 171, 6689-6695 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M34418 isolate_name= DL BASE COUNT 341 a 286 c 419 g 266 t 3064 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UUAUGG AGAGUU(U-R G)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G UU---UAAAA UGAA------ ---------- ---------- ---------- 181 ---------- ---------- --------AC (--CU----- ---------- ---------- 241 --------N- -)GU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA UUUUUR---- AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G G-CGGA---U -AGAC-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CC-U--A-GG ---AAC-(-- --------GC 541 AU-------- -)-GUU---C UA-AG----G AG--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUA---- 661 ----ACCG-- AUG---G-|A UCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-AG-GU-( GU-AAC-GG) -A-CCCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GCCU -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCN-GC-GU 961 G-A-GG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CCUC| UGUC-UU-AA 1021 --GG-GAA-- GA-A------ ---------( -----CAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A .........( .......... .........) .......... |......... 1201 .AG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GU -G|-GU-GC- 1261 A-UU-AAG|U UAG---AGGU G-AAA-GU-G CC-GGG-C(- NN-A)A-CCC -CG-U-GAG- 1321 --GCC-UCUG A-UAC-UGGU G-GACUU-GA GUG-----CA G-GA-GAGGG GAG-C|AGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNNUCUN-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-CC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(AUC-GA)C C--------- ---------- ---------- -------ACC -CCCAG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C --GUCUN--- -AA----AAG 1981 -UAU-A--(- GGGA-)-UAU -A-CUCU--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------CG G-)------- GGN------- ----NA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-R |-AC--AUU- 2281 CG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-AA-CU-C- G-AAU-GU-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACR-CG-C GUA--CUACN AUGGC-C-GG -UA--CAGAC GGA-A-G-C- GA-AGC-U(G 2881 -UGA)AGUG- ---------- AA-GCAAA-U CUGAG-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGGGGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUN- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dfm.nigrif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Desulfotomaculum nigrificans. ACCESSION No information KEYWORDS No information. SOURCE Desulfotomaculum nigrificans. ORGANISM Desulfotomaculum nigrificans. REFERENCE 1 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their relationships to members of the Genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62176 NB: 'UGACGGUACUUUAGGAAGAA' after 477r probably in error; duplication BASE COUNT 355 a 334 c 461 g 266 t 2960 others ORIGIN 1 .......... .......... .......... .........N AUAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CN--N NNAC-AUGCA A-GUC-GAAC 121 G--GG----G NU---GAAUG AA-------- ---------- ---------- ---------- 181 ---------- ---------- --------GC (---U----- ---------- ---------- 241 --------UG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA UUUCUA---- AAC|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUGG---U -AGAC-C-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-U CU-U--G-GN ---GCC-(-- --------GC 541 AU-------- -)-GGU---G CC-GA----G AG--GAAA-- ---GG----- ---------- 601 --(------- ---GGAG--- ---)------ ---------| -----C--C- G--CUA---- 661 ----UCAG-- AUG---G-|A UCCGC----- -GU|----CC C--AUUA-G- CUG-G---UU 721 GG-UG-GU-( GU-AGC-GG) -A-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GC--UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G CN(--UC-GN --)GU-U-GU AAA--CCUC| UGUC-CU-AA 1021 --AG-GAA-- GA-A------ ---------( -----AGAAA ---------) ---------- 1081 UGACGGUACU UUAGGAAGAA U-GA-CGGU- A-CUU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GU -G|-GU-CC- 1261 A-UU-AAG|U UAG---AGGU G-AAA-GU-G CG-GGG-C(- UU-A)N-CCC -NG-U-GAU- 1321 -UGCC-UCUG A-UAC-UGGU G-GACUU-GA GUG-----CA G-GA-GAGGG GAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGC -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UGCAG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-N---(G CAA)---G-N CU-GAAACUN -AAA-GGAAU UG-ACGGG-G -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCG--- CAC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GGGU--- UC-------- -UGCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A G-)------- GGUA------ ----GA---| CGC-GC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGCG-C--GC AACCC-CU-A |-AC--AUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---U(---AG ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-GA-CU-C- U-AAU-GU-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CUAAC GGA-U-G-C- GAAUGG-C(G 2881 -UGA)GCCG- ---------- GA-GCAAA-A CUGAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GN-UGA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.fascia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium fasciatum str. Tanzania ATCC 51790. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium fasciatum str. Tanzania ATCC 51790. ORGANISM Heliobacterium fasciatum. REFERENCE 1 AUTHORS Madigan,M.T. and Woese,C.R. TITLE Phylogenetic classification of Heliobacterium JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51790 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36197|g695344 isolate_name= Tanzania NB: identical to U14557 BASE COUNT 348 a 335 c 478 g 266 t 2949 others ORIGIN 1 .......... .......... .......... ..NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G CA---UUGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAAA---- UGC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUGGA- UCA--UCU-A C-CUCG---G -UUUG-G-GG 421 -AAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GNNN-G--C UAAUACC-GC 481 AU-AAU.... .......... .......... ..-....... .......(-- ------.... 541 AU-------- -)-CCU---U CG-GG----A U---CAAA-- ---GGC---- ---------- 601 --(------- --UUUUR--- ---)------ ---------| ----GC--C- G--CAU---- 661 ----CGAG-- AUG---A-|G UCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCN| UGUC-UC-CA 1021 --GG-GAA-- GA-A------ ---------( ------RWUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CC- 1261 A-UU-AAG|U CUG---AGGU G-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CG-N-NGC- 1321 -GGCC-UUGG A-UAC-UGGU G-GNCUU-GA GGG-----AC G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACG--UC-AA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -UCCGG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGNG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-N AG-CGU---- ---------- ---------- ---G(---UA ---AWG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GYG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CNUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AAU-C(G 2881 -YGA)GAUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.fasci2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium fasciatum str. Tanzania ATCC 51790. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium fasciatum str. Tanzania ATCC 51790. ORGANISM Heliobacterium fasciatum. REFERENCE 1 AUTHORS Kimble,L.K., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Heliobacterium modestocaldum, a thermophilic heliobacterium of thermal springs and volcanic soils JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Madigan,M. and Woese,C.R. TITLE Heliobacterium sps. small subunit rRNA JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51790 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14557|g797295 isolate_name= Tanzania NB: identical to L36197 BASE COUNT 348 a 335 c 478 g 266 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G CA---UUGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAAA---- UGC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -CC-GUGGA- UCA--UCU-A C-CUCG---G -UUUG-G-GG 421 -AAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GNNN-G--C UAAUACC-GC 481 AU-AAU.... .......... .......... ..-....... .......(-- ------.... 541 AU-------- -)-CCU---U CG-GG----A U---CAAA-- ---GGC---- ---------- 601 --(------- --UUUUR--- ---)------ ---------| ----GC--C- G--CAU---- 661 ----CGAG-- AUG---A-|G UCUGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-G-GG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCN| UGUC-UC-CA 1021 --GG-GAA-- GA-A------ ---------( ------RWUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GA-CC- 1261 A-UU-AAG|U CUG---AGGU G-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CG-N-NGC- 1321 -GGCC-UUGG A-UAC-UGGU G-GNCUU-GA GGG-----AC G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACG--UC-AA CUGACG-CUG AG-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -UCCGG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----UCC 1981 -GCU-A--(- GAGA-)-UAG -U-GGNG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-N AG-CGU---- ---------- ---------- ---G(---UA ---AWG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GYG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CNUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AAU-C(G 2881 -YGA)GAUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-UUC- ACAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -UAAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.mobili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacillus mobilis. ACCESSION No information KEYWORDS No information. SOURCE Heliobacillus mobilis. ORGANISM Heliobacillus mobilis. REFERENCE 1 AUTHORS Madigan,M.T. and Woese,C.R. TITLE Phylogenetic classification of Heliobacterium JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36199|g695346 NB: identical to U14560 BASE COUNT 348 a 334 c 479 g 254 t 2961 others ORIGIN 1 .......... .......... .......... .NNNNUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCC A-GUC-GAAC 121 G--GA----G AG---CNGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GY (--UC----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGARG---- CNN|-NU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUGA---G -AGUG-G-GG 421 -GAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GGCU-G--C UAAUACC-GC 481 AU-AAY---- ---------- -------G-U UG-U--Y-UR ---RGG-(-- --------AC 541 AU-------- -)-CCY---U GG-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----UUGG-- AUG---G-|G UCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UR-RG-( GU-AAY-GG) -C-YYACY-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-NC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCU| YGUC-UU-CR 1021 --GG-GAA-- RA-A------ ---------( ------AUAN ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-YA- 1261 U-GU-AAG|U CUG---AGGU G-AAA-GC-U UG-GAG-C(- UC-A)A-CUC -CG-A-AAU- 1321 -GGCC-UUGG A-AAC-UGGA U-GUCUU-GA GAG-----AU G-GA-GAGGA UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CCCGG-UGC 1741 CG--CA---- --GU-(UCA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---USYG--- -AA----YCU 1981 -NUY-A--(- GAGA-)-UNA -G-AGNN--- NG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AGC-C(G 2881 -AGA)GGUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN NUGUA----C 3061 ACACCGNNN- GUC-ACA--- --CCA-CGAA A--GU-YGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UNUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbc.mobili 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacillus mobilis. ACCESSION No information KEYWORDS No information. SOURCE Heliobacillus mobilis. ORGANISM Heliobacillus mobilis. REFERENCE 1 AUTHORS Kimble,L.K., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Heliobacterium modestocaldum, a thermophilic heliobacterium of thermal springs and volcanic soils JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Madigan,M. and Woese,C.R. TITLE Heliobacterium sps. small subunit rRNA JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14560|g797297 NB: identical to L36199 BASE COUNT 348 a 334 c 479 g 254 t 2961 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNNUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCC A-GUC-GAAC 121 G--GA----G AG---CNGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GY (--UC----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGARG---- CNN|-NU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUGA---G -AGUG-G-GG 421 -GAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GGCU-G--C UAAUACC-GC 481 AU-AAY---- ---------- -------G-U UG-U--Y-UR ---RGG-(-- --------AC 541 AU-------- -)-CCY---U GG-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----UUGG-- AUG---G-|G UCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UR-RG-( GU-AAY-GG) -C-YYACY-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-NC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCU| YGUC-UU-CR 1021 --GG-GAA-- RA-A------ ---------( ------AUAN ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-YA- 1261 U-GU-AAG|U CUG---AGGU G-AAA-GC-U UG-GAG-C(- UC-A)A-CUC -CG-A-AAU- 1321 -GGCC-UUGG A-AAC-UGGA U-GUCUU-GA GAG-----AU G-GA-GAGGA UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CCCGG-UGC 1741 CG--CA---- --GU-(UCA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---USYG--- -AA----YCU 1981 -NUY-A--(- GAGA-)-UNA -G-AGNN--- NG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CAC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AGC-C(G 2881 -AGA)GGUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN NUGUA----C 3061 ACACCGNNN- GUC-ACA--- --CCA-CGAA A--GU-YGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UNUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.chlor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium chlorum. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium chlorum. ORGANISM Heliobacterium chlorum. REFERENCE 1 AUTHORS Woese,C.R., DeBrunner-Vossbrinck,B.A., Oyaizu,H., Stackebrandt,E. and Ludwig,W. TITLE Gram-positive bacteria: Possible photosynthetic ancestry JOURNAL Science 229, 762-765 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M11212|g148823 BASE COUNT 369 a 366 c 502 g 275 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AG---CGGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAAG---- CUC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--CCU-A C-CGGA---G -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UC-- C(-GAAA-)G -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U UC-C--U-GA ---AGG-(-- --------AC 541 AU-------- -)-CCU---U CA-GG----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UCCG-- AUG---G-|G UCCAC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCU| UGUC-UU-CG 1021 --GG-GAA-- GA-A------ ---------( ------GUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-CA- 1261 U-GU-AAG|U CUG---AGGU G-AAA-GC-U UG-GAG-C(- UC-A)A-CUC -CG-A-AAC- 1321 -GGCC-UUGG A-AAC-UGGA U-GUCUU-GA GAG-----AU G-GA-GAGGA UAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AU CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -CCCGG-UGC 1741 CG--CA---- --GU-(UCA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGUUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----UCC 1981 -GAU-A--(- GAGA-)-UAG -C-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AGC-C(G 2881 -AGA)GGUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(UC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUCA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.gestii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium gestii str. Chainat ATCC 43375. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium gestii str. Chainat ATCC 43375. ORGANISM Heliobacterium gestii. REFERENCE 1 AUTHORS Madigan,M.T. and Woese,C.R. TITLE Phylogenetic classification of Heliobacterium JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43375 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36198|g695345 isolate_name= Chainat NB: identical to U14558 BASE COUNT 337 a 345 c 473 g 243 t 2978 others ORIGIN 1 .......... .......... .......... ..NNNUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AG---CNGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAGG---- NNN|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CGGA---G -AGUG-G-GG 421 -GAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GGCN-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U US-U--Y-UG ---AAG-(-- --------AC 541 AU-------- -)-CUU---C GG-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----UCNN-- AUG---G-|A UCCGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GN-NU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCN| NGUC-UU-CA 1021 --GG-GAA-- GA-G------ ---------( ------NUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-UG- 1261 C-UU-AAG|U CUG---AGGU G-AAA-GN-C CG-GAG-C(- UC-A)A-CUC -CG-N-NGC- 1321 -GGCC-UUGG A-AAC-UGGG N-GUCUU-GA GGG-----AU G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGNAA)-UGC -GU-AGAU-A UC-GGGAGG- AACC-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AC CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GN-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -CCCAG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCCG--- -NA----YCU 1981 -GCC-A--(- GAGA-)-UGG -U-RGRN--- NN-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-NN-CU-C- U-GGG-NN-N A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -NNGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-CNC- ACAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GNN-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-NGN-NN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-CNA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GNC-NA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.gesti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium gestii str. Chainat ATCC 43375. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium gestii str. Chainat ATCC 43375. ORGANISM Heliobacterium gestii. REFERENCE 1 AUTHORS Kimble,L.K., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Heliobacterium modestocaldum, a thermophilic heliobacterium of thermal springs and volcanic soils JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Madigan,M. and Woese,C.R. TITLE Heliobacterium sps. small subunit rRNA JOURNAL Unpublished (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43375 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14558|g797294 isolate_name= Chainat NB: identical to L36198 BASE COUNT 337 a 345 c 473 g 243 t 2978 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNNUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AG---CNGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAGG---- NNN|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CGGA---G -AGUG-G-GG 421 -GAU-AA-CA G--------- ------CC-- C(-GAAA-)G -GGCN-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U US-U--Y-UG ---AAG-(-- --------AC 541 AU-------- -)-CUU---C GG-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----UCNN-- AUG---G-|A UCCGC----- -GU|----CC G--AUUA-G- CUN-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GN-NU 961 G-G-GG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCN| NGUC-UU-CA 1021 --GG-GAA-- GA-G------ ---------( ------NUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-UG- 1261 C-UU-AAG|U CUG---AGGU G-AAA-GN-C CG-GAG-C(- UC-A)A-CUC -CG-N-NGC- 1321 -GGCC-UUGG A-AAC-UGGG N-GUCUU-GA GGG-----AU G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGNAA)-UGC -GU-AGAU-A UC-GGGAGG- AACC-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AC CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GN-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CN -CCCAG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCCG--- -NA----YCU 1981 -GCC-A--(- GAGA-)-UGG -U-RGRN--- NN-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-NN-CU-C- U-GGG-NN-N A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -NNGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-CNC- ACAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GNN-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-NGN-NN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-CNA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GNC-NA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.modcal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium modestocaldum str. Ice1. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium modestocaldum str. Ice1. ORGANISM Heliobacterium modestocaldum. REFERENCE 1 AUTHORS Kimble,L.K., Mandelco,L., Woese,C.R. and Madigan,M.T. TITLE Heliobacterium modestocaldum, a thermophilic heliobacterium of thermal springs and volcanic soils JOURNAL Unpublished (1995) STANDARD No information REFERENCE 2 AUTHORS Madigan,M. and Woese,C.R. TITLE Heliobacterium sps. small subunit rRNA JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14559|g797296 isolate_name= Ice1 NB: identical to L36200 seq. BASE COUNT 349 a 347 c 489 g 251 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AG---CUGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAGG---- CNC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUGA---G -AGUG-G-GG 421 -GAU-AA-CA A--------- ------CC-- C(-GAAA-)G -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U US-Y--U-SR ---RRG-(-- --------AC 541 AU-------- -)-CYU---Y GG-AU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----UCAG-- AUG---G-|G UCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-G-GG-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCU| UGUC-UU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-CC- 1261 U-UU-AAG|U CUG---AGGU G-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CG-G-NGC- 1321 -GGCC-UUGG A-AAC-UGGA G-GNCUU-GA GGG-----AU G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACC-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GN-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCAG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCCG--- -AA----CCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGNN--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUC- 2281 AG--UUGC-N AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-NN-CU-C- U-GGG-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -NAGG-A-AG 2761 G-CG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-CUC- ACAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hel.spIce1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Heliobacterium sp. str. Ice1. ACCESSION No information KEYWORDS No information. SOURCE Heliobacterium sp. str. Ice1. ORGANISM Heliobacterium sp. REFERENCE 1 AUTHORS Madigan,M.T. and Woese,C.R. TITLE Phylogenetic classification of Heliobacterium JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36200|g695347 isolate_name= Ice1 NB: identical to U14559 BASE COUNT 349 a 347 c 489 g 251 t 2940 others ORIGIN 1 .......... .......... .......... ..NUUUGUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G AG---CUGAA ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GU (--UU----- ---------- ---------- 241 --------CG -)AU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GGAGG---- CNC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUGA---G -AGUG-G-GG 421 -GAU-AA-CA A--------- ------CC-- C(-GAAA-)G -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-U US-Y--U-SR ---RRG-(-- --------AC 541 AU-------- -)-CYU---Y GG-AU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----UCAG-- AUG---G-|G UCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAG-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-G-GG-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCCU| UGUC-UU-CA 1021 --GG-GAA-- GA-A------ ---------( ------GAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GCGC- GUG-CAG-GC -G|-GA-CC- 1261 U-UU-AAG|U CUG---AGGU G-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CG-G-NGC- 1321 -GGCC-UUGG A-AAC-UGGA G-GNCUU-GA GGG-----AU G-GA-GAGGA CAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACC-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 ACA--UU-AC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GN-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UCCAG-UGC 1741 CG--CA---- --GU-(CAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---UCCG--- -AA----CCU 1981 -UGC-A--(- GAGA-)-UGC -G-AGNN--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUC- 2281 AG--UUGC-N AG-CGA---- ---------- ---------- ----(---GA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|G 2701 G-NN-CU-C- U-GGG-GA-G A-CU-G-CCC --GG(-GA-C GA)-CCG-G- -NAGG-A-AG 2761 G-CG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-C CGGAG-AAAG -CC-G-CUC- ACAGUUCGGA 2941 U-UGCUCUC- (UGCAAC-U- C)-GAGAGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGG-(NC -AGC-AU)-A CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAA A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4-EUB 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4 EUBACTERIUM_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4 EUBACTERIUM_AND_RELATIVES. ORGANISM 2.16.4 EUBACTERIUM_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1 C.COCCOIDES_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1 C.COCCOIDES_GROUP. ORGANISM 2.16.4.1 C.COCCOIDES_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.1 C.XYLANOLYTICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.1 C.XYLANOLYTICUM_SUBGROUP. ORGANISM 2.16.4.1.1 C.XYLANOLYTICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens.. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41172|g1127849 BASE COUNT 408 a 324 c 454 g 291 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G UUAU-UCGCU GAUGAA---- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------AGAA UCUUGA--AU AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AG-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--A UAACACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GUC-(-- --------GC 541 AU-------- -)-GAC---A CA-GU----G UG--AAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-AAGA--- ----C-CUC( -----GUAA- ---------) GAGG------ 1081 ---------- ------GG-A U-GA-CGGU- A-CCU-G-AG U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-GU- 1261 A-UC-AAG|U CUG---AAGU G-AAA-CC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GCU- 1321 -UGCU-UUGG A-AAC-UGGU A-GACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GUA(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GC-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GA-GAC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------UCU -UUCAG-UGC 1741 CG--GC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG AGA-UC|--- ---------C ---AGAUG-- -AA----UGA 1981 -UGG---G(- UAAUG)--CC -A-UCAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CAU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---U(---AA ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AUG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGUC-G--U -AA--CAAAG GGA-A-G-C- AA-CCC-U(G 2881 -CGA)AGGU- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GAC- CCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-C- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -AAA-G-UCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-UG-CU A-AGGC-AGG UCG-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Willems,A., Amat-Marco,M. and Collins,M.D. TITLE Phylogenetic analysis of Butyrivibrio strains reveals three distinct groups of species within the Clostridium subphylum of the gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 46 (1), 195-199 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89970|g1185079 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 409 a 324 c 454 g 291 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUNCA A-GUC-GANC 121 G--GA----G UUAU-UCGCU GAUGAA---- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------AGAA UCUUGA--AU AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AG-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--A UAACACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GUC-(-- --------GC 541 AU-------- -)-GAC---A CA-GU----G UG--AAAA-- ---UA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--A- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-AAGA--- ----C-CUC( -----GUAA- ---------) GAGG------ 1081 ---------- ------GG-A U-GA-CGGU- A-CCU-G-AG U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-GU- 1261 A-UC-AAG|U CUG---AAGU G-AAA-CC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GCU- 1321 -UGCU-UUGG A-AAC-UGGU A-GACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GUA(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GC-AA CUGACG-UUG AG-G------ -------CU- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GA-GAC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------UCU -UUCAG-UGC 1741 CG--GC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG AGA-UC|--- ---------C ---AGAUG-- -AA----UGA 1981 -UGG---G(- UAAUG)--CC -A-UCAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UCAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CAU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---U(---AA ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AUG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGUC-G--U -AA--CAAAG GGA-A-G-C- AA-CCC-U(G 2881 -CGA)AGGU- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GAC- CCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-C- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -AAA-G-UCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CU A-AGGC-AGG UCG-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.proteocl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium proteoclasticum str. B316 ATCC 51982 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium proteoclasticum str. B316 ATCC 51982 (T). ORGANISM Clostridium proteoclasticum. REFERENCE 1 AUTHORS Attwood,G.T., Reilly,K. and Patel,B.K.C. TITLE Clostridium proteoclasticum sp. nov. a novel proteolytic bacterium from the bovine rumen JOURNAL Int. J. Syst. Bacteriol. 46, 753-758 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51982 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U37378|g1051210 Former RDP Sids: C.nakupumu isolate_name= B316 NB: former name Clostridium nakupumuans BASE COUNT 408 a 336 c 476 g 298 t 2858 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-GAG--A-U AUAACGCUGC AGA------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AC (--UU----- ---------- ---------- 241 --------CG -)GU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------A AAGCUU-GUU GUA|UCU--U AGUG-GGGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUCA---U -ACUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--U UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GA ---GUC-(-- --------GC 541 AU-------- -)-GAC---U CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CA G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-AA- CGA------- -----UC-UG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C GCG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-AAGG--- ----C-UC-( -----GCAA- ---------) -GAG------ 1081 ---------- -------AGA U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-AC -G|-GU-CA- 1261 A-GC-AAG|U CUG---AAGU G-AAA-CC-C CA-CGG-C(- UC-A)A-CCG -UG-G-GCU- 1321 -UGCU-UUGG A-AAC-UGUU U-GACUA-GA GUA-----CU G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-UCGG- 1441 -U-G-GG(-G AA-G)GCGG- -CUUANUG-- ---------- ---------- ---------G 1501 ACA--GC-AA CUGACG-UUG AG-G------ -------CU- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GU-GC---- ---------- 1681 -(CAU-AG)- ---------- ---------- ---------- -------GCA -UUCAG-UGC 1741 CG--UC---- --GC-(UAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-UC-UUG AGA-UC|--- ---------C ---AGAUG-- -AA----UAA 1981 -GUG---G(- UAAUG)--CA -U-UUAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-C-(UUAA -GU)-CCCCC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CAU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AUG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGUC-G-U- -AA--CAAAG GGG-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GAC- CCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-CCG 3121 G-UGA-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CC-GU-CG A-AGGC-AGG UCG-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aminophi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aminophilum str. F VPI 14602. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aminophilum str. F VPI 14602. ORGANISM Clostridium aminophilum. REFERENCE 1 AUTHORS Paster,B.J., Russell,J.B., Yang,C.M., Chow,J.M., Woese,C.R. and Tanner,R.S. TITLE Phylogeny of ammonia-producing ruminal bacteria, Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 107-110 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI 14602 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04165 isolate_name= F BASE COUNT 382 a 333 c 465 g 287 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAACGAG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-GAA----A UU---ACAGA AGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUUUGU---- AAU|-UU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUG---U -ACCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--U UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---UYC-(-- --------GC 541 AU-------- -)-GRA---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGG- GCG-CAG-AC -G|-GC-GA- 1261 U-GC-AAG|U CUN---AAGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CUG -UG-G-NAU- 1321 -UGCU-UUGG A-AAC-UGUA U-UGCUU-GA GUG-----CU G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GC-AA CUGACG-UUG AG-G------ -------CC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -YUCGG-UGC 1741 CG--GC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---AUCUG-- -AA----UGU 1981 -GAU---G(- CAAAA)--GU -C-GCAG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUA- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-UGG-GA-G A-CC-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CANAG GGA-G-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- UA-AU-GCCC -GAA-G-CCA 3121 G-UGG-C-UC -AA-CC---- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGC-AGG ACU-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.symbiosm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium symbiosum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium symbiosum. ORGANISM Clostridium symbiosum. REFERENCE 1 AUTHORS Varel,V.H., Tanner,R.S. and Woese,C.R. TITLE Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 45, 490-494 (1995) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59112 ATCC 14940 = VPI 4246-1 (T) BASE COUNT 396 a 318 c 457 g 285 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C GA---UUUAA CGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA GUUGAA---- UUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---AUU-(-- --------GC 541 AU-------- -)-GAU---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-AA- 1261 A-GC-AAG|U CUG---AAGU G-AAA-GC-C CG-CGN-C(- UC-A)A-CUG -CG-G-NNC- 1321 -UGCU-UUGG A-AAC-UGUU U-AACUG-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---ACUCG-- -AC----GGG 1981 -GGA---G(- UAACG)--UC -C-CNNU--- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| GGA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUA- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-UGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CANAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGG ACC-GA-NA- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.symbios2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium symbiosum.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium symbiosum. ORGANISM Clostridium symbiosum. REFERENCE 1 AUTHORS Both,B., Buckel,W., Kroppenstedt,R. and Stackebrandt,E. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66000|g534970 BASE COUNT 382 a 313 c 439 g 272 t 2970 others ORIGIN 1 .......... .......... .......... .....NCNUG AGAGUU(U-G A)U-CCU|-G 61 GCUCNG-GAU -NNNC-GC-- UGGC-GGC-G -UGC-CU--N NCCC-NUGCA A-GUC-GAAC 121 G-AAG----C NA---UUUAA CGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------N-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA GUUGAA---- UUG|AC---- ---G-GNGG- 361 -A-NG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUNG---U -ANUG-G-GG 421 -GAC-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUNA-G- CNA-G---NN 721 GG-UA-AG-( GU-AAC-GG) -C-UNACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-NG| -A-CCC--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-NGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAN |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-AA- 1261 A-GC-AAG|U CUG---AAGU G-AAA-GC-C CG-CGG-C(- UC-A)A-CUG -CG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUU U-AACUG-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-NGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCN- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UN-CU-- -------N|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(N CAA)---U-A AU-GAAACUC -AAA-GGAAU UG-ACNGG-G -A-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAUCAA-C N)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---AUCCG-- -AC-----GG 1981 -GGA---G(- UAACG)--UC -C-CC-U--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| GGA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UA-A |-UU--CUA- 2281 AG--UAGC-N AG-CGG---- ---------- ---------- ----(---UN ---NGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-AA-CU-C- U-UGG-GA-G A-CU-G-CNA --GG(-GA-U AA)-CCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CNN-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU--C-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sphenoid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sphenoides. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sphenoides. ORGANISM Clostridium sphenoides. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73449|g437770 (bases 8 to 1522) ATCC 19403 = DSM 632 (T) BASE COUNT 402 a 342 c 472 g 296 t 2864 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C GA---UUCAA AUGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-U- (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAU UUUGAA---- UUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AA----- ---------- -------C-A CA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGU---A CG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-AC- 1261 U-GC-AAG|U CUG---GAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G--AC- 1321 -UGCU-UUGG A-AAC-UGUG G-UGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACGUUCG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CC---- --GG-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 --CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------G ---GAAUG-- -AC----CGG 1981 -GAU---G(- UAACG)--AU -C-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AU--CC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- --AG(---UC ---AAG--)C 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-C CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-NGGG---- ACU-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG NNUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.celerecr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium celerecrescens. ACCESSION No information KEYWORDS No information. SOURCE Clostridium celerecrescens. ORGANISM Clostridium celerecrescens. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71848|g431236 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 401 a 343 c 476 g 299 t 2857 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C GA---UUUCA NGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUGAAA---- UUG|ACU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-A CA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGU---A CG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-AC- 1261 U-GC-AAG|U CUG---GAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUG G-UGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------G ---GAAUG-- -AC----CGG 1981 -GAU---G(- UAACG)--AU -C-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AUU-CC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-N-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-G-G-C- AA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-C CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AC-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGG ACU-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aerotole 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aerotolerans. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aerotolerans. ORGANISM Clostridium aerotolerans. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76163|g572628 BASE COUNT 398 a 322 c 453 g 290 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .....CGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AU---UUUAA AGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUUAAG---- AUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GCU-(-- --------GC 541 AU-------- -)-AGC---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-UC- 1261 U-GC-AAG|U CUG---GAGU G-AAA-GC-C -G-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUG G-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------G ---GAAUG-- -AC----CGU 1981 -CUC---G(- UAACG)--GA -G-ACCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AUU-CC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAN---- ---------- ---------- ---N(---UN ---NNN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NUG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGG ACU-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.xylanol2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium xylanolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium xylanolyticum. ORGANISM Clostridium xylanolyticum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76739|g572675 (bases 8 to 1448) BASE COUNT 387 a 318 c 443 g 289 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AU---UUUAA AGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUUAGA---- AUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GCU-(-- --------GC 541 AU-------- -)-AGU---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-UC- 1261 U-GC-AAG|U CUG---GAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUG G-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UNC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------G ---GAAUG-- -AC----CGU 1981 -CUC---G(- UAACG)--GA -G-ACCU--- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AUU-CC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ---G(---UW ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.xylanoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium xylanolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium xylanolyticum. ORGANISM Clostridium xylanolyticum. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71855|g431246 ATCC 49623 (T) = DSM 6779 geog_source= Richards Bay, South Africa biol_source= decayed Pinus patula chips NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 403 a 329 c 467 g 297 t 2880 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AU---UUUAA AGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUUAGA---- AUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GCU-(-- --------GC 541 AU-------- -)-AGN---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-UC- 1261 U-GC-AAG|U CUG---GAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUG G-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------G ---GAAUG-- -AC----CGU 1981 -CUC---G(- UAACG)--GA -G-ACCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AUU-CC-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CA -AC-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-UU-GC-CG A-AGGC-GGG ACU-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GCAA-CAAGG UAGCC-NUNN N(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spFS41 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sp. str. FS 41 DSM 6877. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sp. str. FS 41 DSM 6877. ORGANISM Clostridium sp. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 6877 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76747|g572669 (bases 42 to 1484) isolate_name= FS 41 BASE COUNT 384 a 324 c 447 g 280 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 ......AA-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------N-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAU UUCUGG---- UUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUCA---C -ACUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----UGAG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAN ---------C 1141 -NNNGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-NA- 1261 A-GC-AAG|U CUG---GAGU G-AAA-NC-C CA-GGG-C(- UC-A)A-CCC -UG-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUU U-UGCUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(-CA-AA)G ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GCAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CCCUG-- --A----CCG 1981 -GUC-A-G(- UAAAG)-UGA -C-CUU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-CCC-U(G 2881 -CGA)AGGC- ---------- AA-GCAAA-U CCCAA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-C- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- CA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AN---GGG GCA-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.clostrid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium clostridiiforme. ACCESSION No information KEYWORDS No information. SOURCE Clostridium clostridiiforme. ORGANISM Clostridium clostridiiforme. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59089 BASE COUNT 398 a 333 c 460 g 279 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNGAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -CAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AA---UUAAG AUGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UU (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UCUUGA---- UUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUCA---C -ACUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A GU-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- A--GUG---- 661 ----UGAG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-GA- 1261 A-GC-AAG|U CUG---AAGU G-AAA-AC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CAC- 1321 -UGCU-UUGG A-AAC-UGUU U-UGCUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(GCA-AA)G ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 CG--CC---- --GC-(AAA- ---C)G-CA- GUAA-GCAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CCCUG-- --A----CGG 1981 -CCG---G(- UAACG)--CG -G-CCN---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-C- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- CA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CN A-AGGC-GGG GCA-GG-UA- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.2 RUC.HANSENII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.2 RUC.HANSENII_SUBGROUP. ORGANISM 2.16.4.1.2 RUC.HANSENII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.cellul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium cellulosolvens. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium cellulosolvens. ORGANISM Eubacterium cellulosolvens. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34613|g762796 BASE COUNT 376 a 328 c 446 g 287 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCUUYAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---UCUGG AAGAU----- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAU UCCUCU---- GUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---AUG-(-- --------GC 541 AU-------- -)-CAU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACN-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------ARW- ---------) ---------- 1081 ---------- ---------- Y-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCANC NGNGGUA-A) U-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-GA- 1261 U-GC-AAG|U CUG---AAGU G-AAA-AC-C UG-GGG-C(- UC-A)A-CCC -CA-G-NNU- 1321 -UGCU-UUGG A-AAC-UGUA U-UGCNA-GA GUA-----CC G-NA-GGGGU AAG-C|GNNA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -NNUACUG-- ---------- ---------- ---------G 1501 ACG--GN-NA CUGACG-UUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CAG -CA-GG---- ---------- 1681 -(CAA-AG)- ---------- ---------- ---------- -------CCU -GUUGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ANNGN-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AGA 1981 -UCC---U(- UAAUC)--GG -A-UCCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---G(---YC ---ARG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-G AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UG -AA--CAGAG GGN-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- UG-GCAAA-U CUCAA-AAAA -CA-C-GUC- CCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-U- C)-GACUACA -CGAAGC-UG -GNAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGGC-AGG GCC-AG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.cellu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium cellulosolvens. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium cellulosolvens. ORGANISM Eubacterium cellulosolvens. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71860|g431248 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 392 a 354 c 469 g 297 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---UCUGG AAGAU----- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAU UCCUCU---- GUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---AUG-(-- --------GC 541 AU-------- -)-GAU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GU|----UG G--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GUU--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-GA- 1261 U-GC-AAG|U CUG---AAGU G-AAA-AC-C UG-GGG-C(- UC-A)A-CCC -CA-G-GAU- 1321 -UGCU-UUCC A-AAC-UGUA U-UGCUA-GA GUA-----CC G-GA-GGGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GC-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CAG -CA-GG---- ---------- 1681 -(CAA-AG)- ---------- ---------- ---------- -------CCU -GUUGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AGA 1981 -UCC---U(- UAAUC)--GG -A-UCCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGG-GA-G A-CU-G-CCA --GG(-GA-G AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UG -AA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- UG-GCAAA-U CUCAA-AAAA -CA-C-GUC- CCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-U- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUC- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -A--CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGGC-AGG GCC-AG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.obeum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus obeum.. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus obeum. ORGANISM Ruminococcus obeum. REFERENCE 1 AUTHORS Rainey,F.A. and Janssen,P.H. TITLE Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus Ruminococcus JOURNAL FEMS Microbiol. Lett. 129 (1), 69-73 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85101|g854420 BASE COUNT 383 a 337 c 452 g 282 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----A AAC--CUUUC AUUGAA---- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGAUU UGGNNU---G UUU|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CA A--------- ------CC-- A(-GAAA-)U -GGUU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GA-CU- 1261 G-GC-AAG|U CUG---AUGU G-AAA-GG-C GG-GGG-C(- UC-A)A-CCC -CU-G-GAC- 1321 -UGCA-UUGG A-AAC-UGUU A-GUCUU-GA GUG-----CC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CC---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGN 1981 -CCC---U(- UAACC)--GG -A-UCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCC- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---U(---CC ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GCUG|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-GCC-U(G 2881 -CGA)AGGU- ---------- AA-GCAAA-U CCCAA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CU---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAAG-G-A G-CU-GC-CG A-AGGC-GGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.hansen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus hansenii. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus hansenii. ORGANISM Ruminococcus hansenii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59114 Former RDP Sids: Stc.hansen ATCC 27752 (T) = VPI C7-24 = GIFU 8637 NB: former name "Streptococcus" hansenii BASE COUNT 381 a 318 c 435 g 285 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNUAUCAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---UUAUC AUUGAC---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGAUU UGAUAU---- UUG|ACU--N AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GGCU-G--C UAAUGCN-CA 481 UA-AGC---- ---------- -------G-C AC-A--G-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCNC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACN-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-NGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GA-AG- 1261 A-GC-AAG|U CUG---AUGU G-AAA-GG-C UG-GGN-C(- NU-A)A-CCC -CA-G-NAC- 1321 -UGCA-UUGG A-AAC-UGUU U-UUCUA-GA GUG-----CC G-NN-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-UGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CAG -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------U ---GCCUG-- -AC----CGU 1981 -UCC---U(- UAACC)--GG -A-GCUU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-CA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UAGC-C AG-NAG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-NA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UN -N-AAUC-AU CAU-G-CC-C NNNAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-AGC-G(G 2881 -UGA)CGCU- ---------- UA-GCAAA-U CUCAA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCN- NUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGN-C-CC -AA-CC---- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-G.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.hanse2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus hansenii. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus hansenii. ORGANISM Ruminococcus hansenii. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14155|g454558 (bases 7 to 1347) Former RDP Sids: Stc.hanse2 ATCC 27752 (T) = VPI C7-24 = GIFU 8637 NB: former name Streptococcus hansenii BASE COUNT 329 a 289 c 370 g 249 t 3139 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A).....|.. 61 .......... ......UA-- CGUA-GGG-G -UGC-UU--A ACNC-AUGCA AAGUC-GAGC 121 G-AAG----C AC---UUAUC AUUGAC---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UN----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGAUU UGAUAU---- NUG|ACU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -AAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GGCU-G--C UAAUGCCGCA 481 UA-AGC---- ---------- -------G-C AC-A----GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G UG--AAAA-- ---NC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCCC----- -CC|----CU C--AUUA-G- GUA-A---UU 721 GC-UG-GG-( GU-AAC-GG) -C-CUCCC-A A|-CCC-GC- CNA------- -----UN-AG 781 U-AN-C-CG| -C-CCU--(G -AGA)-GGGU ----GA-C-- CGC-C|C-AC -AUNGG-G-A 841 (CUGA-GA-C ACG)--NCCC -AGA-C-UCC -(UNCG)--G GAG-NC-AU- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU NAA--CUUC| UAUC-AG-CA 1021 --GN-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-UC U-AA--GC-- ---------C 1141 -CCC...... .........( .CA--GCAGC CG.......) .......... |......... 1201 GGG-AGGUCA CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GA-AG- 1261 A-CC-AAG|U CUG---AUGU GAAAA-GG-C UG-GGG-C(C UU-A)A-CCC -CA-G-GAC- 1321 -UGCA-UUGG A-AAC-UGUU U-UUCUA-GA GUG-----CC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACGGUUG AG-G------ -------CU- C-GAAA-GUC GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-UGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CAG -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGAGACGU 1801 CCA-G...(. ...)...... ........UC -AAA-NGAA. .......... .......... 1861 ........AG CGGUGG-AGC A-U-GU-GGU -UUAUUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------U ---GCCUG-- -AC----CGU 1981 -UCC---U(- UNACC)--GG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-CG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGA-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--NC AACCC-CU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UC ---CGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-AGC-G(G 2881 -UGA)CGCU- ---------- UA-ACAAA-U CUCAA-AAAU -UA-C-GUC- CCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GNCUGCA -CGAAAC-UG -GAAU-CAC- -UAGUA-AUC 3001 AC-GA..(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.8 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 8. str. 8. ACCESSION No information KEYWORDS No information. SOURCE str. 8. str. 8. ORGANISM str. 8. REFERENCE 1 AUTHORS Rieu-Lesme,F., Dauga,C., Grimont,P.A.D. and Gouet,P. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85333|g732984 isolate_name= 8 BASE COUNT 348 a 299 c 411 g 249 t 3069 others ORIGIN 1 .......... .......... .......... .......... AGAGGU(U-G A)U-CAU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---UUAAG UG-------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UC (--UGUU--- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAN ACUGAU---- UUG|AGU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUGA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GANA-)U -GGCU-G--C UAAUACC-G- 481 AU-AAG---- ---------- ---------- GA-C--A-GG ---ACC-(-- --------GC 541 G.....---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. ...GC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GN-NN-NG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGN------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCN-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-AA-GA- 1261 G-CC-AAG|U CUG---AUGU G-AAA----G CU-GGG-C(- UU-A)A-CCC -AG---GAC- 1321 -UGCA-UUGG A-AAC-UGUU U-UUCUA-GA GUG-----CC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUA..... .......... .......... .......... 1501 .......... .......... .......... .......... .......... ...GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GG-AGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -CCC---G(- UAACG)--GG -G-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--- 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- UUAUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGG ACC-GA-UN- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.produc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus productus. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus productus. ORGANISM Ruminococcus productus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14144|g454185 (bases 7 to 1381) Former RDP Sids: Pps.produc ATCC 27340 = GIFU 7707 NB: former name Peptostreptococcus productus BASE COUNT 350 a 305 c 428 g 269 t 3024 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-AN-U UA---AGACG GAUU------ ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UNAA GUCUUU---- GUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UCAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GNUC| UAUC-AG-NU 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-CA--GAAG ---------C 1141 -CCCGCCU-A ACUAC-GUG( CCA--GCAGC CGCG.....) .........G |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GA-AG- 1261 A-GC-AAG|U CUG---AUGU G-AAA-GG-C UG-GGG-C(- UU-A)A-CCC -CA-G-GAC- 1321 -UGCA-UUGG A-AAC-UGUG U-UCUAU-GA GUG-----CC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-UU-CGG -GU-NG---- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUNGG-UGC 1741 CG--CN---- --GN-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGGAC 1801 GUU-CC--(C GAA)G--G-A UU-AUAGGUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CN-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCC---G(- UAACG)--GG -G-ANUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ---A(---UN ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGA-A-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- GA-GCGAA-U CUCAA-AAGC -CA-G-AUC- CCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- N)-GCCUACA -CGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUAA---C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.coccoids 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium coccoides. ACCESSION No information KEYWORDS No information. SOURCE Clostridium coccoides. ORGANISM Clostridium coccoides. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59090 ATCC 29236 = VPI 11470 (T) NB: GB has this associated with DSM 2088 BASE COUNT 374 a 330 c 459 g 280 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNUAUCAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C GC---UAAGA CAGAUU---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UUGAA GUCUUU---- GUG|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 NU-NAG---- ---------- -------C-G CA-C--A-GG ---ACC-(-- --------GN 541 NU-------- -)-GGU---C UG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-NA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UNAA-GGGA- GCG-UAG-AC -G|-GA-AG- 1261 A-GC-NAG|U CUG---AUGU G-AAA-GG-C UG-GGN-C(- UU-A)A-CCC -CA-G-GAC- 1321 -UGCA-UUGG A-AAC-UGUU G-UUCGA-GA GUG-----CC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-UUG AG-G------ -------CU- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G NUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-N-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCC---G(- UAACG)--GG -G-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAC---- ---------- ---------- ---A(---UG ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U NA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ANG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CNAAG GGA-A-G-C- GA-GAC-A(G 2881 -CGA)UGUU- ---------- GA-GCGAA-U CCCAA-AAAU -NA-C-GUC- CCAGUUCGGA 2941 C-UGCAGUC- (UGCNAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AU)-G CCG-CGGUG- AAUNC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGC-GGG ACC-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.3 BTV.CROSSOTUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.3 BTV.CROSSOTUS_SUBGROUP. ORGANISM 2.16.4.1.3 BTV.CROSSOTUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.crosst 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio crossotus. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio crossotus. ORGANISM Butyrivibrio crossotus. REFERENCE 1 AUTHORS Willems,A., Amat-Marco,M. and Collins,M.D. TITLE Phylogenetic analysis of Butyrivibrio strains reveals three distinct groups of species within the Clostridium subphylum of the gram-positive bacteria JOURNAL Int. J. Syst. Bacteriol. 46 (1), 195-199 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89981|g1185078 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 409 a 321 c 439 g 296 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-NC-- UGUC-GGC-G -UGC-UU--A ACAC-AUNCA A-GUC-GANC 121 G-AAG----C ACUU-CA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AG--AA GUG|ACU--U ANUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUA---C -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-C AG-C--A-GA ---GUC-(-- --------GC 541 AU-------- -)-GAC---U CA-AC----U GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--NCCC -AAA-C-UCC -(UACG)--G GAG-GC-AN- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- C-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-AU- 1261 C-AC-AAG|U CAG---AAGU G-AAA-AU-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCU-UUUG A-AAC-UGUG G-AGCUG-GA GUG-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GU-UUC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------AAG -CUCGG-UGC 1741 CG--GC---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CUG 1981 -UUA---U(- GUAAU)--GU -A-ACAU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---U(---AA ---G----)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-ACC-U(G 2881 -UGA)AGGC- ---------- AA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGU- AA-AU-GCCC -GAA-G-UCG 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GC-CG A-AGGC-AGG UAU-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.saburr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium saburreum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium saburreum. ORGANISM Eubacterium saburreum. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS amplification_primer= 3': AGAAAGGAGGTGATCC amplification_primer= 5': AGAGTTTGATYMTGGCTCAG NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome Amplification primers: BASE COUNT 427 a 319 c 465 g 312 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C UG---UUAAA AGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA UUUUAA---- CAG|ACU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CG G--------- ------AG-- A(-GAAA-)U -UUCC-G--C UAAGACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CA-GG----G GU--AAAA-- ---UA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--A- G--GUA---- 661 ----UAAG-- AUG---G-|A UCCGC----- -GU|----CC G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AGA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GAA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-AC -G|-GC-CA- 1261 A-GC-AAG|U CUG---AAGU G-AAA-UG-C AU-GGG-C(- UC-A)A-CCC -AU-G-AAU- 1321 -UGCU-UUGG A-AAC-UGUU U-GGCUU-GA GUG-----UC G-GA-GGGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AC-AA CUGACG-UUG AG-G------ -------CU- C-GAAG-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------U|G -GU-GU-CGG -GG-AG---- ---------- 1681 -(AUA-AA)- ---------- ---------- ---------- -------CUC -UUCGG-UGC 1741 CG--CAA--- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UA|--- ---------C ---UCUUG-- -AA----UAG 1981 -UCU-U-G(- UAAU-)-GAG -A-CUAG--- U--------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUC- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GAC-GA-G A-CA-G-CCG --GA(-GA-U AA)-UCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG UGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCAAA-U CACAG-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAU- CA-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GC-CG A-AGGC-AGG GAG-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Jhn.ignava 4376 bp RNA RNA 02-JUL-1998 DEFINITION Johnsonella ignava. ACCESSION No information KEYWORDS No information. SOURCE Johnsonella ignava. ORGANISM Johnsonella ignava. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Evidence for the placement of the Gram-negative Catonella morbi (Moore and Moore) and Johnsonella ignava (Moore and Moore) within the Clostridium subphylum of the Gram-positive bacteria on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 855-857 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87152|g1067136 BASE COUNT 386 a 343 c 482 g 260 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GANC 121 G-GAG--A-C UUUUUCA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUGCAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGCA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GAG AAG|UCU--U AGUG-NCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUCG---C -ACCG-U-GG 421 -GAU-AA-CA G--------- ------GG-- G(-GAAG-)C -UCCU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-A--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---A -A-UA----U AC-AAAAA-- ---GG----- ---------- 601 --(------- ---GAUA--- ---)------ ---------| -----C--C- G--GUG---- 661 ----AGAG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- AUA-G---UU 721 GG-CA-GG-( AU-AGC-AG) -C-CUACC-A A|-GUC-AA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--CU-CG --)GN-ACGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----AAAAA ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-AN U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( NCA--NCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-UA- 1261 U-GC-AAG|U CUG---GAGU G-AAA-UG-C CG-GGG-C(- UC-A)A-CCC -CG-G-AGC- 1321 -UGCU-CUGG A-AAC-UGCG U-GGCUU-GA GUG-----UC G-GA-GGGGC AGG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACG--AC-AA CUGACG-UUG AG-G------ -------CU- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-A----- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- --------UU -UCCGG-UGC 1741 CG--GC---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UG|--- ---------C ---CGGUG-- -AA-----GG 1981 -GGG-A-G(- UAAAA)-UCC -U-CUGC--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- G-)------- GG-------- -----G--C| ACC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-A |-UU--CCC- 2281 GG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- C-GGG-GA-G A-CU-G-CCG --AG(-GA-A GA)-CUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CA -GA--CAGAG GGA-A-G-C- AA-GGC-C(G 2881 -CGA)GGCA- ---------- GA-GCAAA-U CUCAA-AAAC -UG-C-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUN- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- CA-AU-GCCC -GAA-G-UCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-AGG GCG-GA-UG- ACC-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.4 EUB.FORMICIGENERANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.4 EUB.FORMICIGENERANS_SUBGROUP. ORGANISM 2.16.4.1.4 EUB.FORMICIGENERANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.nexile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium nexile. ACCESSION No information KEYWORDS No information. SOURCE Clostridium nexile. ORGANISM Clostridium nexile. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins ,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73443|g456654 BASE COUNT 401 a 338 c 469 g 305 t 2863 others ORIGIN 1 .......... .......... .......... .........G AGA-UU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGCCGGCCG -UGC-UU--- ACAC-AUGC- A-GUC-GAAC 121 G-AAG----C GC---UUAAA CUGGAUU--- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UUGAAG UUUUUG---- CUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-NN 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---GCU-(-- --------GC 541 AU-------- -)-GGC---A CA-GU----G U---AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-NG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-G-UG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-UG- 1261 U-GU-AAG|U CUG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G--AC- 1321 -UGCA-UUGG A-AAC-UAUG U-AACUA-GA GUG-----UC G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-CA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--UA-CU-- -------A|G -GU-GU-CGG -GG-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAGU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CG-UGG-AGC A-U-GU-GGU -UUAAUU-CG -(A-GCAA-C G)--CGAAGA 1921 --CCUUA-CC UGG-UC-UUG ACA-UC|--- ---------C ---CGGUG-- -AC----CGG 1981 -UCC-A-G(- UAAU-)-GGG -A-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AC--GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-ACC-U(G 2881 -UGA)GGGG- ---------- AA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGG ACC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.gnavus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus gnavus. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus gnavus. ORGANISM Ruminococcus gnavus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14136|g454188 (bases 7 to 1387) ATCC 29149 (T) = GIFU 12124 = VPI C7-9 biol_source= human feces NB: 7 nucs removed after 527r; nucs below removed before 989r GCGAAGAGGGGAUGUGAUANUGCGAAGUACGAGAAGAGCUAAGCCGG BASE COUNT 329 a 283 c 394 g 248 t 3122 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|.. 61 .......... ..AGC-GN-- UGGU-GNC-G -UGC-NU--A CNAC-AUGCA A-GUN-GAGC 121 G-AAG----C AC---CUUUA CGGAUU---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UC----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UUGAG CCNUUG---- GUG|ACU--G AGCG-GCGG- 361 -A-CG-GN-U GAGU---AAC -GN-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--A UAAUACC-NC 481 AU-GAA---- ---------- -------G-N GC-G--ACAG G--ACC-(-- --------GU 541 CU-------- -)UGGN---G NC-GG----U GU--GAAA-- ---AC----- ---------- 601 --(------- ---UNCG--- ---)------ ---------| -----G--U- G--AUA---- 661 ----UGAG-- AUG---G-|A GCCGC----- -GU|---ACU G--AUUA-G- GUA-G---UU 721 GN-UG-GG-( GU-AAN-CG) -G-CCUNC-C A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACUAU-- GG-GG-(GAA A)-CCC-UGA UACA|-ACNA CCCC-NC-GU 961 G-A-GC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AA-CA 1021 --GG-GUA-- GA-------- ---------( ------AUA- ---------) ---------- 1081 ---------- ---------- U-GCNCGGU- A-CCU-G-AC U-AA--GAAA ---------C 1141 -CCCGGCU-G ACNAC-UUG( CCA--GCAGC CG.......) ..A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-AU- 1261 G-GC-AAG|C CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCA-UUUG G-AANCUGUC A-GGCUAGCA GUG-----UC G-GA-GAGGA AAA-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AU-GA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)N-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CNA)---G-A AU-GNNNNUC -AAA-NGAA. .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ....UC-UCG ACA-UC|--- ---------C ---CGCUG-- ACC----GCU 1981 -CU----A(- ACNAU)C--G -G-AGAU--- UG-------- ---CC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--G| AGA-GG-GGA |---C|A--G 2161 GU-GG-UGGA UG|G-CUG-- AAG-UCA|-G C-U---CG-N |NU-C(-GUG A)-NAUGU-U 2221 GG-G-(AAAA GUG)-NCNCC AG-------- CGAG-CN-CG AACCG-CU-A |-UCU-UUU- 2281 AG--UANC-C AG-CAUU--- ---------- ---------- ----(---UU ---UG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GAUG|G 2701 G-CA-CU-C- U-AGA-GA-G G-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC --C--GGGC- 2821 U-ACACCA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-GCC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGC-CU U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.formic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium formicigenerans. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium formicigenerans. ORGANISM Eubacterium formicigenerans. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34619|g762802 ATCC 27755 = VPI C8-13 (T) NB: valid exception to normal 988:1217 pair (A:C) BASE COUNT 390 a 319 c 454 g 295 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---AUAAG UUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UGAAG ACUUUU---- GUG|ACU--G AGCG-GCGG- 361 -A-CG-NN-N GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------YU-- A(-GAAA-)U -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---ACU-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G NN--NAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-N A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGNGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GC-UG- 1261 U-GC-AAG|U CUG---AAGU G-AAA-GG-C AU-GGG-C(- UC-A)A-CCU -GU-G-GAC- 1321 -UGCU-UUGG A-AAC-UGUG C-AGCUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUACUG-- ---------- ---------- ---------G 1501 ACG--AU-GA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--UG-CU-- -------A|G -GU-GU-CGG -GU-AGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CUA -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAGU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGA-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -AC----CGC 1981 -UUC---G(- UAAUG)--GA -A-GYUU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAGAG GGA-G-G-C- AG-AGC-C(G 2881 -CGA)GGCC- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGG ACC-GA-UA- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.contor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium contortum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium contortum. ORGANISM Eubacterium contortum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34615|g762798 ATCC 25540 = VPI 0119 (T) BASE COUNT 387 a 317 c 444 g 297 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C RC---UUUAC UUWGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-W---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UGAAR GGUUUU---- GYG|ACU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--R-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G GN--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CN-N-NNC- 1321 -UGCA-UUGG A-AAC-UAUG U-AACUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-GA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----CGG 1981 -CGU---G(- UAAUG)--GU -G-CCNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-GG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNN AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ---U(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 N-NA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-NA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--NN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CA--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-G-G-C- GA-AGC-C(G 2881 -YGA)GGUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGG ACC-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.fissic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium fissicatena. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium fissicatena. ORGANISM Eubacterium fissicatena. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS amplification_primer= 3': AGAAAGGAGGTGATCC amplification_primer= 5': AGAGTTTGATYMTGGCTCAG NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome Amplification primers: BASE COUNT 405 a 336 c 471 g 312 t 2852 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C GC---UUUAC UUAGAUU--- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UUGAAG AGUUUU---- GCG|ACU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G GG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-UA- 1261 U-GU-AAG|U CUG---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCA-UUGG A-AAC-UAUG U-AACUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AG-CA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -CGU---G(- UAAUG)--GU -G-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-G-G-C- AA-UAC-C(G 2881 -CGA)GGUU- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGG AUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.torque 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus torques. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus torques. ORGANISM Ruminococcus torques. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14137|g454189 (bases 7 to 1385) ATCC 27756 (T) = GIFU 12126 = VPI B2-51 biol_source= human feces NB: 12 nucs before 541r BASE COUNT 354 a 311 c 417 g 262 t 3032 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCNN-NNU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---UUNGC UUAGAU---- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UC----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UGAAG AGGAUU---- GUG|ACU--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CG-GG----G GU--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 Y-AG-C-CG| -A-CCU--(G -AGA)-GGGU ---GCA-C-- CSG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AN-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CG.......) .......... |.GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAGCAC -G|-GA-UG- 1261 G-GC-AAG|U CUG---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCA-UUGG A-AAC-UGUU C-AUCUA-GA GUG-----MU G-GA-GAGGU WAMGU|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA C--UA-CU-- -------A|G -GU-GU-CGG -GU-GGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-U-C 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAGU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GNCGCUC -AAA-NGAAU .....UGG-A -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGU 1921 AACCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGG 1981 -ACG---G(- UAAUG)--CG -U-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---CC ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUUU-G-AG -CA--GGGC- 2821 U-ACA-CA-C GUGCUCUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GAU- CCC-GGG-UC CUCC...... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.oroticum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium oroticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium oroticum. ORGANISM Clostridium oroticum. REFERENCE 1 AUTHORS Varel,V.H., Tanner,R.S. and Woese,C.R. TITLE Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 45, 490-494 (1995) STANDARD No information REFERENCE 2 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59109 ATCC 13619 = VPI 0565 (T) BASE COUNT 400 a 334 c 460 g 311 t 2871 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---AUUUA CCUUUGAUU- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UUGAAG AGUGUU---- GUG|ACU--G AGCG-GCGG- 361 -G-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACU-G--C UAAUACC-GU 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A CA-GU----G GU--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-AA- 1261 U-GC-AAG|U CUG---AUGU G-AAA-C... .......C(- UC-A)A-CCC -CG-A-UAC- 1321 -UGCA-UUGG A-AAC-UGUG U-GACUA-GA GUG-----UC G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-GA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GU-NGC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------CCA -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGG 1981 -CCA---G(- UAAUG)--UG -G-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-G-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGG ACC-GA-UA- ACU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.5 BTV.FIBRISOLVENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.5 BTV.FIBRISOLVENS_SUBGROUP. ORGANISM 2.16.4.1.5 BTV.FIBRISOLVENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rsb.cecic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Roseburia cecicola. ACCESSION No information KEYWORDS No information. SOURCE Roseburia cecicola. ORGANISM Roseburia cecicola. REFERENCE 1 AUTHORS Cornick,N.A., Jensen,N.S., Stahl,D.A., Hartman,P.A. and Allison,M.J. TITLE Lachnospira pectinoschiza sp. nov.: an anaerobic pectinophile from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 44, 87-93 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14676 BASE COUNT 356 a 290 c 414 g 278 t 3038 others ORIGIN 1 .......... .......... .......... NNNNNACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---UCUAU UUGAU----- ---------- ---------- ---------- 181 ---------- ---------- -----UU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAA GAUUUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---ACU-(-- --------GC 541 AU-------- -)-GGU---A CC-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(URCG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNNAAU-- GG-GG-(GAA A)-CCC-UNA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----AAAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 MAG-CGUUAU YC-GGAUUUA -CU-GGGU|G UMAA-GGGA- GCG-CMG-GC -G|-GU-GC- 1261 G-GC-AAG|U CUG---AUGU G-AAA-GN-C CG-GGG-C(- UY-M)A-CCC -CG-G-NAC- 1321 -UGCA-UUGG A-AAC-UGUC G-UACUA-GA GUG-----UY G-GA-GGGGN AAG-U|GGNA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-AGC--- ---------- 1681 -(-AU-U-)- ---------- ---------- -G-------- -------CUC -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CW- AUAA-GUAUU C|C|N-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-N--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----AAU 1981 -RUA---U(- GUAAU)--GU -A-UAUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UY-A |-UU--CUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CNAAG GGA-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-C CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-U- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -MGA-AU)-G NCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.rectal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium rectale. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium rectale. ORGANISM Eubacterium rectale. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34627|g762810 ATCC 33656 = VPI 0990 (T) BASE COUNT 382 a 325 c 437 g 299 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUUAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---UUUAU UUGAUU---- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----CUGAU UAUUUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--R-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----UG G--ANUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CNACN-N A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GC -G|-GU-GC- 1261 G-GC-AAG|U CUG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CN-N-NAC- 1321 -UGCA-UUGG A-AAC-UGUC G-UACUA-GA GUG-----UC G-GA-GGGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GA-AGC--- ---------- 1681 -(-AU-U-)- ---------- ---------- -G-------- -------CUU -CUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -UAC---U(- UAACC)--GU -A-CCUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UC ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|N 2701 N-NA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-AGC-U(G 2881 -UGA)AGCC- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-C- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GNG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACN--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-CCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GU-CG A-AGGC-AG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.ramulu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium ramulus. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium ramulus. ORGANISM Eubacterium ramulus. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34623|g762806 BASE COUNT 369 a 331 c 449 g 295 t 2932 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNUUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---UUUAC CUGAU----- ---------- ---------- ---------- 181 ---------- ---------- -----UU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAU UGUUCU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- UAA--CCU-G C-CUCA---C -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GRCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----UGAG-- AUG---G-|A UCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GNA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-CC- 1261 U-GC-AAG|U CUG---AUGU G-AAA-GG-C CG-GNG-C(- UC-A)A-CCC -CN-N-NAC- 1321 -UGCA-UUGG A-AAC-UGUA G-GNCUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AC-UA CUGACG-CUG AG-G------ -------CU- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CA-GG---- ---------- 1681 -(UAA-GN)- ---------- ---------- ---------- -------CCU -GUCNG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CGGUG-- -AC----AGA 1981 --AC-A-U(- GUAA-)-UGU -G-UUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----N--C| ACC-GG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CCC- 2281 AG--UAGC-C AG-NAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CN-CU-C- U-GUG-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CANAG GGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCNA-AAAU -AA-C-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GUAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACNGNNC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGGC-AGG UCU-GA-UA- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrslv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens str. 49. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens str. 49. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41167|g1127844 isolate_name= 49 BASE COUNT 399 a 316 c 450 g 310 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AGU--UUAUC ACGAU----- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------UGA CGAUUU---A CUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-GU----G UG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CUC -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUUG-- -AC----AAA 1981 -GUA-U-G(- UAAU-)-GUA -C--UCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-UCA-C(G 2881 -UGA)GUGU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGG--AGG CUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pv.ruminis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudobutyrivibrio ruminis str. A12-1 DSM 9787 (T). ACCESSION No information KEYWORDS No information. SOURCE Pseudobutyrivibrio ruminis str. A12-1 DSM 9787 (T). ORGANISM Pseudobutyrivibrio ruminis. REFERENCE 1 AUTHORS van Gylswyk,N.O., Hippe,H. and Rainey,F.A. TITLE Pseudobutyrivibrio ruminis gen. nov., sp. nov., a butyrate-producing bacterium from the rumen that closely resembles Butyrivibrio fibrisolvens in phenotype JOURNAL Int. J. Syst. Bacteriol. 46, 559-563 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 9787 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95893 isolate_name= A12-1 BASE COUNT 394 a 321 c 443 g 303 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GACG 121 G-AGC----A AC---UUAUC -ACGAUC--- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GUGAC GA-UUU---- GUU|GAC-UG AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUG---U -ACAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---AUC-(-- --------GC 541 AU-------- -)-GAN---G CA-GU----G UG--AAAA-- ---G------ ---------- 601 --(------- ---UUUUU-- ---)------ ---------| --------C- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AA-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CUC -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---CACUG-- ACA----AAG 1981 -UAU---G(- UAAU-)--GU -A-CUCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-UUG-G(G 2881 -UGA)CCAU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGGC-AGG CUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens.. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41169|g1127846 BASE COUNT 415 a 321 c 451 g 323 t 2866 others ORIGIN 1 .......... .......... .......... .AUUAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AA---UUUAU UAC------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGAC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAGUUUA UUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GC ---UUU-(-- --------GC 541 AU-------- -)-GAA---G CG-GU----G UG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-CAG-C(- UC-A)A-CUG -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-CGCC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUUG-- -AC----AAA 1981 -CUA---U(- GUAAU)--GU -A-GUCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ---U(---UA ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-GUG-G(G 2881 -UGA)CCAU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGGC-AGG CUU-GC-UA- ACU--GGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-UACC A(A....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens.. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41168|g1127845 BASE COUNT 414 a 330 c 462 g 327 t 2843 others ORIGIN 1 .......... .......... .......... ...UAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---UUACU UACGAUC--- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GUGAC GAGUUA---- AUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUA---U -ACAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-AU ---GUU-(-- --------GC 541 AU-------- -)-GAC---A AC-GU----G UG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUUG-- ACA----AAC 1981 -UAU---G(- UAAU-)--GU -A-GUCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-GUG-G(G 2881 -UGA)CCAU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-AGG--AGG CUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens.. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41171|g1127848 BASE COUNT 410 a 321 c 447 g 320 t 2878 others ORIGIN 1 .......... .......... .......... AUAUAACAUG AGAGUU(U-G A)U-CCU|-G 61 SCUCRG-GWU -GAAC-GC-- UGSC-GSC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---UUACU UACGAUC--- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GUGAC GAGUUU---- AUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUA---U -ACAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-AU ---GUU-(-- --------GC 541 AU-------- -)-GAC---A AC-GU----G UG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUUG-- ACA----AAC 1981 -UAU---G(- UAAU-)--GU -A-GUCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-GUG-G(G 2881 -UGA)CCAU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-ACG--AGG CUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-U... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Btv.fbrsl4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Butyrivibrio fibrisolvens.. ACCESSION No information KEYWORDS No information. SOURCE Butyrivibrio fibrisolvens. ORGANISM Butyrivibrio fibrisolvens. REFERENCE 1 AUTHORS Forster,R.J., Teather,R.M., Deng,S. and Gong,J. TITLE 16S rDNA analysis of Butyrivibrio fibrisolvens: phylogenetic position and relation to butyrate producing anaerobic bacteria from the rumen of white-tailed deer JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41170|g1127847 BASE COUNT 410 a 321 c 448 g 322 t 2875 others ORIGIN 1 .......... .......... .......... AUAUAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UG-C--GC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---UUACU UACGAUC--- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GUGAC GAGUUU---- AUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUA---U -ACAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-AU ---GUU-(-- --------GC 541 AU-------- -)-GAC---A AC-GU----G UG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UU- 1261 U-AC-AAG|U CUG---AUGU G-AAA-GC-C CG-UGG-C(- UC-A)A-CCA -CG-G-UAU- 1321 -UGCA-UUGG A-AAC-UGUA G-AACUA-GA GUG-----UC G-GA-GGGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -CU-UCC--- ---------- 1681 -(-AU-A-)- ---------- ---------- -G-------- -------GGA -GUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUUG-- ACA----AAC 1981 -UAU---G(- UAAU-)--GU -A-GUCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- AA-GUG-G(G 2881 -UGA)CCAU- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-GCCC -GAA-G-UCU 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CA-GC-CG A-ACG--AGG CUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-U... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.6 EUB.VENTRIOSUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.6 EUB.VENTRIOSUM_SUBGROUP. ORGANISM 2.16.4.1.6 EUB.VENTRIOSUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.hadrum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium hadrum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium hadrum. ORGANISM Eubacterium hadrum. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS ATCC 29173 = DSM 3319 NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome and clone Method: Sanger BASE COUNT 408 a 341 c 470 g 304 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAA----C AC---CUUAU UUGAUU---- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----CUGAA GAUUUG---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UC-- A(-GAAA-)U -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CA-GG----G GU--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--CU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GU -G|-GU-AU- 1261 G-GC-AAG|U CAG---AAGU G-AAA-AC-C CA-GGG-C(- UU-A)A-CUC -UG-G-GAC- 1321 -UGCU-UUUG A-AAC-UGUC A-GACUG-GA GUG-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CGC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CC---- ---------- 1681 -(GUA-GA)- ---------- ---------- ---------- -------GGC -UUCGG-UGC 1741 CG--CA---- --GC-(CAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-UA-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -UCC---U(- UAACC)--GG -A-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---CAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAGAG GGA-A-G-C- AG-CCU-C(G 2881 -UGA)GAGU- ---------- GA-GCAAA-U CCCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CAG- UA-AC-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGG ACC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUNN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.unifor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium uniforme. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium uniforme. ORGANISM Eubacterium uniforme. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34626|g762809 BASE COUNT 390 a 311 c 427 g 310 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCN A-GUC-GAAC 121 G-AAG----C AC---UUUAU UUGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------AGAU UAUUCU---- GUG|ACU--U AGUG-GCGG- 361 -A-CG-GG-N GAGU---AAN -NC-GUGGG- UAA--CCU-G C-CUYA---U -ACAC-C-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GN 481 AU-AAG---- ---------- -------C-A UA-C--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGN----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGN-NAUAUU G-CNCUAU-- GG-GG-(NNN A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-U AU(--UN-CG --)GU-AUGU AAA--CUUC| UAUC-UG-CN 1021 --AG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GU -G|-GC-AA- 1261 G-GC-AAG|U CAG---AAGU G-AAA-GC-U CG-GGN-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCU-UUUG A-AAC-UGCC A-GGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GA-G----- ---------- 1681 -(CAA-AG)C ---------- ---------- ---------- --------UC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AN CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-NC UGA-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CA----AGA 1981 -CUU-U-G(- UAAU-)-GAA -G-UCCC--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- CN-ACC-Y(G 2881 -UGA)GGGG- ---------- GA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- UA-AU-GCCC -GNA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-NG A-AGGC-AGN AUU-GA-UA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.ventri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium ventriosum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium ventriosum. ORGANISM Eubacterium ventriosum. REFERENCE 1 AUTHORS Varel,V.H., Tanner,R.S. and Woese,C.R. TITLE Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 45, 490-494 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34421|g762792 ATCC 27560 = VPI 1013B (T) = DSM 3988 (T) BASE COUNT 398 a 323 c 452 g 295 t 2908 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---CUUGG ACAGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GGAAG ACCAUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGN-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GC-AU- 1261 G-GC-AAG|U CAG---AAGU G-AAA-GC-C UG-GGN-C(- UC-A)A-CCC -CG-G-AAU- 1321 -UGCU-UUUG A-AAC-UGUC A-GGCUA-GA GUG-----UC G-GA-GGGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-GAC--- ---------- 1681 -(-AA-UA)- ---------- ---------- -G-------- -------UUC -CUCGG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----AGG 1981 -UCA---G(- UAAUG)--UG -A-CCCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-AG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CANAG GGA-A-G-C- GA-CCC-C(G 2881 -UGA)GGGU- ---------- AA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.ventr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium ventriosum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium ventriosum. ORGANISM Eubacterium ventriosum. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS DSM 3988 (T) = VPI 1013B (T) = ATCC 27560 amplification_primer= 3': AGAAAGGAGGTGATCC amplification_primer= 5': AGAGTTTGATYMTGGCTCAG NB: several mistakes (here) vs "n's" in Woese seq. Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome Amplification primers: BASE COUNT 411 a 336 c 472 g 306 t 2851 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---CUUGG ACAGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GGAAG ACCAUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GC-AU- 1261 G-GC-AAU|G CAG---AAGU G-AAA-GC-C UG-GGG-C(- UC-A)A-CCC -CG-G-AAU- 1321 -UGCU-UUUG A-AAC-UGUC A-GGCUA-GA GUG-----UC G-GA-GGGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACG--AU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-GAC--- ---------- 1681 -(-AA-UA)- ---------- ---------- -G-------- -------UUC -CUCGG-UGC 1741 CG--AA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CUU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGC-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----AGG 1981 -UCA---G(- UAAUG)--UG -A-CCCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UA ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-AG -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG GGA-A-G-C- GA-CCC-C(G 2881 -UGA)GGGU- ---------- AA-GCAAA-U CUCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.7 LCN.MULTIPARA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.7 LCN.MULTIPARA_SUBGROUP. ORGANISM 2.16.4.1.7 LCN.MULTIPARA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.pectin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium "pectinii" str. P-1 DSM 6788. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium "pectinii" str. P-1 DSM 6788. ORGANISM Eubacterium "pectinii". REFERENCE 1 AUTHORS Mountfort,D.O., Grant,W.D., Morgan,H., Rainey,F.A. and Stackebrandt,E. TITLE Isolation and characterization of an obligately anaerobic, pectinolytic, member of the genus Eubacterium from mullet gut JOURNAL Arch. Microbiol. 159, 289-295 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 6788 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X67097|g535050 isolate_name= P-1 BASE COUNT 349 a 271 c 370 g 255 t 3131 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GA-C 121 G-AAG----C AC---AUAAG ACAGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAA GAUUAU---- GUG|AUC--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC--UGGG- UAA--CCU-G C-CUUG---U -ACUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- A(-GAAA-)U -GACA-G--C -AAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-G- ---AUC-(-- --------AC 541 AU-------- -)-GAU---A C--GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GAA---- 661 ----U-AG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU--G) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC --UUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GG--AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 --A-GU-G-A A-GAA--G-U AU(--UU-CG --)GA-UUGU AAA--GCUC| UA-C-AG-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-G--CGGU- A-CUU-G-AC U-AA--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CG-GGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GG-A- GUG-UAG-GU -G|-GC-AU- 1261 A-GC-AAG|U CAG---AAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC --G-G-AAC- 1321 -UGCU-UUUG A-AAC-UGCC A......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .ACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- --GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -G--CCC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------GGC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----GGA 1981 -UCC---G(- UAAU-)--GG -G-AUCU--- UU-------- ---CC----- --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG UGA-A-G-C- AA-GCU-G(G 2881 -NGA)CAGU- ---------- AA-GCAAA-U CNCAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcn.mpara 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lachnospira multipara str. D32 ATCC 19207 (T). ACCESSION No information KEYWORDS No information. SOURCE Lachnospira multipara str. D32 ATCC 19207 (T). ORGANISM Lachnospira multipara. REFERENCE 1 AUTHORS Cornick,N.A., Jensen,N.S., Stahl,D.A., Hartman,P.A. and Allison,M.J. TITLE Lachnospira pectinoschiza sp. nov.: an anaerobic pectinophile from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 44, 87-93 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19207 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14720 (bases 1 to 371) ATCC 19207 (T) = ATCC 12563 = DSM 3073 biol_source= bovine rumen isolate_name= D32 NB: ATCC 19207 is Bryant and Small strain D32. former name Lachnospira multiparus BASE COUNT 300 a 231 c 337 g 236 t 3272 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .GC-GUGGG- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AG-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--A UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CYACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(URCG)--G GAG-GC-NG- C-M---GU-G 901 GGG-AAUAUU G-CACMAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GUG-UAG-GU -G|-GC-AA- 1261 A-GC-AAG|U CAG---UAGU G-AAA-AU-C CG-GGG-C(- UC-A)A-CCU -CG-G-AAC- 1321 -UGCU-AUUG A-AAC-UGUU U-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GU-CUC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------AGA -UUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- AUAA-GUAUU C|C|N-NCU- G-GGGAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ..C----AAG 1981 -UAU-G--(- UAA--)-UGU -A-CUCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--UCU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---G(---UU ---CGG--)C 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UA--GGGC- 2821 U-ACR-CA-C GUG--CUACN AUGGC-G-UA -AA--CNAAG UGA-A-G-C- GA-GVG-U(G 2881 -UGA)GCUU- ---------- AA-GCAAA-U CACAA-AAAU -AA-C-GUC- UCNGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -NGA-AU)-G CUG-CGGUG- AAUA...... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcn.mpar40 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lachnospira multipara str. 40. ACCESSION No information KEYWORDS No information. SOURCE Lachnospira multipara str. 40. ORGANISM Lachnospira multipara. REFERENCE 1 AUTHORS Cornick,N.A., Jensen,N.S., Stahl,D.A., Hartman,P.A. and Allison,M.J. TITLE Lachnospira pectinoschiza sp. nov.: an anaerobic pectinophile from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 44, 87-93 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14713 (bases 1 to 331) biol_source= bovine rumen isolate_name= 40 NB: former name Lachnospira multiparus BASE COUNT 269 a 200 c 290 g 199 t 3418 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(..AAA-)C -GGCU-G--A UAAUACN-GC 481 AU-AAG---- ---------- -------C-G CA-C--R-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(URSG)--G GAG-GC-NG- C-N---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAN ---------C 1141 -UCCGGCU-A AA.......( .......... .........) .......... |......... 1201 .......... .......... ........|. .....GGGA- GUG-UAG-GU -G|-GC-AA- 1261 A-GC-AAG|U CAG---UAGU G-AAA-AU-C CG-GGG-C(- UC-A)A-CCU -CG-G-NAC- 1321 -UGCU-AUUN A-AAC-UGUU U-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G USAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-VU-UGG -GU-CUC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------AGA -UUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- AUAA-GUAUU C|C|N-NCU- G-GGGAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |...-|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CN-A |-UU--UCU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---G(---UU ---CGG--)C 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-G-UA -AA--CNAAG UGA-A-G-C- GA-GVG-U(G 2881 -UGA)GCUU- ---------- AA-GCAAA-U CACAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.eligen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium eligens. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium eligens. ORGANISM Eubacterium eligens. REFERENCE 1 AUTHORS Varel,V.H., Tanner,R.S. and Woese,C.R. TITLE Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 45, 490-494 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34420|g762791 ATCC 27750 = VPI C15-48 (T) BASE COUNT 402 a 314 c 444 g 303 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---UUACG AACAGAU--- ---------- ---------- ---------- 181 ---------- ---------- ------U-AY (--UU----- ---------- ---------- 241 --------CG -)GU-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAAGU UCCUUU---- AUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACUG-G-GG 421 -GAU-AG-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--G UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-AU ---GUU-(-- --------GC 541 AU-------- -)-GAC---A UG-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AA(--UU-CG --)UU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GUG-UAG-GU -G|-GC-CA- 1261 U-GC-AAG|U CAG---AAGU G-AAA-AU-C NG-GGG-C(- UY-A)A-CCC -CN-N-NAC- 1321 -UGCU-UUUG A-AAC-UGUA A-GGCUG-GA GUG-----CA G-GA-GGGGU GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CCC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------GGC -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 --AC-A--(- GUAA-)-UGU -G-UCCU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ARU-RG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG UGA-A-G-C- GA-AGU-C(G 2881 -UGA)GGCC- ---------- AA-GCAAA-U CACAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-CGA- AA-AU-GCCC -GAA-G-UCG 3121 G-UGA-C-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-CC-GC-CG A-AGGC-AGG UUU-GA-NA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcn.pectin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lachnospira pectinoschiza str. 150-1. ACCESSION No information KEYWORDS No information. SOURCE Lachnospira pectinoschiza str. 150-1. ORGANISM Lachnospira pectinoschiza. REFERENCE 1 AUTHORS Cornick,N.A., Jensen,N.S., Stahl,D.A., Hartman,P.A. and Allison,M.J. TITLE Lachnospira pectinoschiza sp. nov.: an anaerobic pectinophile from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 44, 87-93 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14675 isolate_name= 150-1 BASE COUNT 392 a 313 c 434 g 293 t 2944 others ORIGIN 1 .......... .......... .......... NNNNNNUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---NNAAG ACNRGAU--- ---------- ---------- ---------- 181 ---------- ---------- ------U-NY (--UU----- ---------- ---------- 241 --------CG -)GR-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UGAAG UCNNUU---- AUG|NCU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---C -ACAG-G-GG 421 -GAU-AG-CA G--------- ------UU-- G(-GAAA-)C -GGCU-G--A UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--A-GN ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-CA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U NA(--UU-CG --)UU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GUG-UAG-GU -G|-GC-AU- 1261 C-AC-AAG|U CAG---AAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-N-NAC- 1321 -UGCU-UUUG A-AAC-UGUG G-AGCUN-GA GUG-----CA G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CUC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------AGC -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|R-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CR-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C --UCCUUG-- CCC----GGU 1981 ---C-A--(- GUAA-)-UGU -G-ACCU--- UU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ---U(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-AA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUNAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -AA--CAAAG UGA-A-G-C- GA-GAG-U(G 2881 -UGA)GCUN- ---------- AA-GCAAA-U CACAA-AAAU -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACNGCNC- GUN-ACN--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-UCG 3121 G-UNA-C-CU -AA-C----- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-CC-NC-CG A-AGGC-AGG U......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP. ORGANISM 2.16.4.1.8 C.POLYSACCHAROLYTICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.hallii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium hallii. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium hallii. ORGANISM Eubacterium hallii. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34621 Former RDP Sids: Eub.halii ATCC 27751 = DSM 3353 = VPI B4-27 (T) NB: wierdness in 83 helix BASE COUNT 377 a 337 c 460 g 285 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---CUUAC CWGAU----- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------UGAA AGWYUG---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-G CA-C--G-AG ---GAG-(-- --------AC 541 AU-------- -)-CUC---C UU-GU----G UG--AAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-CA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGAG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GU -G|-GC-AG- 1261 U-GC-AAG|U CAG---AUGU G-AAA-GG-C CG-GGG-C(- UC-A)A-CCC -CG-G-NGC- 1321 -UGCA-UUUG A-AAC-UGCW Y-RGCUA-GA GUA-----CA G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CC---- ---------- 1681 -(GUA-UA)- ---------- ---------- ---------- -------GGC -UYCGG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGC 1981 -ACC---U(- UAAUC)--GG -U-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC NACCC-CU-A |-UC--UUC- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACN AUGGC-G-GU -CA--CAGAG UGA-G-G-C- GA-ACC-Y(G 2881 -CGA)NGGG- ---------- GA-GCAAN-C CACAA-AAAG -GC-C-GUC- CCAGUUCGGA 2941 C-UGUAGUC- (UGCAAC-C- C)-GACUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-CCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- UUUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CG A-AGGU-GGA GCC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cop.eutact 4376 bp RNA RNA 02-JUL-1998 DEFINITION Coprococcus eutactus. ACCESSION No information KEYWORDS No information. SOURCE Coprococcus eutactus. ORGANISM Coprococcus eutactus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14148|g455389 (bases 7 to 1353) ATCC 27759 (T) = GIFU 7852 = VPI C33-22 biol_source= human feces BASE COUNT 355 a 298 c 397 g 272 t 3054 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 G......... .GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----AUUGA A--------- ---------- ---------- ---------- 181 ---------- ---------- ---GCUG-GA (--GAUU--- ---------- ---------- 241 --------GC -)UC-CGGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CGAUUU---- ---|------ AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AG-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--G UAAAACC-NU 481 AUUAAG---- ---------- -------C-G CA-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAU---A CA-GU----G UG--AAAAC- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CCCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CG.......) .......... |.CGGU-G-- 1201 CAG-CGUUAU CC-GGACUUA -CU-GGGU|G CAAA-GGGU- GCG-UAG-GU -G|-GC-UA- 1261 G-GC-AAG|U CCG---AAGU G-AAA-AU-C CG-GGG-C(- UC-A)A-CCC -CG-G-AAC- 1321 -UGCU-UUGG A-AAC-UGUU U-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GC-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GU-UCC--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------GGA -CUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GCAGCUC -AAA-GGAAU UG........ .....CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUUCCG -(AAGCAA-C G)--CGAAAA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UGAUG-- -AC----GGU 1981 -UCC---U(- UAACC)--GG -A-ACUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AN-------- CGAG-C--CC AACCC-CC-U |AUU--UCC- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-N-CCG --GG(-GA-U AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -UA--CAAAG AGA-A-G-C- GA-ACC-U(G 2881 -UGA)AGGC- ---------- GA-GCAAA-C CUCAA-AAAG -GC-U-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC--UU- CCC-GGC-UU A......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.herbivor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium herbivorans str. 54408 ATCC 49925 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium herbivorans str. 54408 ATCC 49925 (T). ORGANISM Clostridium herbivorans. REFERENCE 1 AUTHORS Varel,V.H., Tanner,R.S. and Woese,C.R. TITLE Clostridium herbivorans sp. nov., a cellulolytic anaerobe from the pig intestine JOURNAL Int. J. Syst. Bacteriol. 45, 490-494 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49925 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34418|g762786 isolate_name= 54408 BASE COUNT 378 a 329 c 456 g 295 t 2918 others ORIGIN 1 .......... .......... .......... .NNNUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---UUGAU UCUGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UGAAG AAUCUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-C GA-U----AG ---GCC-(-- --------GC 541 AU-------- -)-GGC---C UG-GA----C GG--AAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGAG-- AUG---G-|A YCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNNGGUA-A) U-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GU -G|-GC-GU- 1261 G-GC-AAG|U CAG---AAGU G-AAA-GG-C CG-GGG-C(- UC-A)A-CCC -CG-N-NNC- 1321 -UGCU-UUUG A-AAC-UGUC A-UGCUG-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CYUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CCC--- ---------- 1681 -(-AC-A-)- ---------- ---------- -G-------- -------GGC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UC|--- ---------C ---CGAUG-- -AC----CGU 1981 -CCC---G(- UAAUG)--GG -G-NCNU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CN-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UG -N-AAUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-A-GU -UA--CAAAG UGA-A-G-C- UA-CCU-C(G 2881 -UGA)GAGC- ---------- AA-GCAAA-U CACAA-AAAG -GC-U-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-GG-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.polsacch 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium polysaccharolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium polysaccharolyticum. ORGANISM Clostridium polysaccharolyticum. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71858|g431244 ATCC 33142 = DSM 1801 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 390 a 362 c 480 g 286 t 2858 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GANC 121 G-AAG----C AC---CUGGA UGGA------ ---------- ---------- ---------- 181 ---------- ---------- -----UU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAA GUUCUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-C GA-U--A-GG ---GCC-(-- --------GC 541 AU-------- -)-GGC---C CG-GU----C GG--AAAA-- ---GA----- ---------- 601 --(------- ---AUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAUU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU A-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGN- A-CCU-G-AA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGUGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GU -G|-GC-GU- 1261 G-GC-AAG|U CAG---AAGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUUG A-AAC-UGUC A-UGCUG-GA GUG-----CA G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CCC--- ---------- 1681 -(-AC-A-)- ---------- ---------- -G-------- -------GGC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----CGU 1981 -CCG---G(- CAAUG)--CG -G-ACUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---AU ---NNG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-NC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GC -UA--CAAAG UGA-A-G-C- UA-CCC-C(G 2881 -UGA)GGGC- ---------- GA-GCAAA-U CACAA-AAAG -GC-U-GUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGCAC-CC -AC-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.polsacc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium polysaccharolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium polysaccharolyticum. ORGANISM Clostridium polysaccharolyticum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77839|g572657 DSM 1801 = ATCC 33142 BASE COUNT 393 a 353 c 475 g 278 t 2877 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AC---CUGAU GGA------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAA GUUCUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CUAA-CCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-C GA-U--A--- ---GCC-(-- --------GC 541 AU-------- -)-GGC---C CG-GA----C GG--AAAA-- ---GA----- ---------- 601 --(------- ---AUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GU -G|-GC-GU- 1261 G-GC-AAG|U CAG---AAGU G-AAA-GC-- -G-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCU-UUUG A-AAC-UGUC A-UGCUG-GA GUG-----CA G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GC-GCC--- ---------- 1681 -(-AC-A-)- ---------- ---------- -G-------- -------GGC -UUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- GUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-CC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----CGU 1981 -CCG---G(- CAAUG)--CG -G-ACUU--- U--------- ---CC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUC- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---AU ---CNG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --GG(-GA-C AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GC -UA--CAAAG UGA-A-G-C- UA-CCC-C(G 2881 -UGA)GGCA- ---------- AA-GCAAA-U CACAA-AAAG -GC-U-GUC- CCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-GG-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)NN UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acm.rumini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetitomaculum ruminis str. 139B ATCC 43876. ACCESSION No information KEYWORDS No information. SOURCE Acetitomaculum ruminis str. 139B ATCC 43876. ORGANISM Acetitomaculum ruminis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43876 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59083 isolate_name= 139B BASE COUNT 383 a 340 c 459 g 273 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUAAACAAG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-GAG----U GC---UUGUA GAA------- ---------- ---------- ---------- 181 ---------- ---------- ----GCU-UU (--UU----- ---------- ---------- 241 --------CG -)GA-AGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GG AAAUAA---- GUU|ACU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AC-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-CU 481 AU-AAG---- ---------- -------C-G CA-C--G-AU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A AA-GU----G UG--AAAA-- ---G------ ---------- 601 --(------- --CCAUAA-- ---)------ ---------| --------C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-AGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNNGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GC -G|-GC-AG- 1261 G-GC-AAG|U CAG---AUGU G-AAA-UC-C NG-GGG-C(- CC-A)A-CCC -CG-G-NAC- 1321 -UGCA-UUUG A-AAC-UGUC C-NGCUU-GA GUA-----CA G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-ACC--- ---------- 1681 -(-AC-U-)- ---------- ---------- -G-------- -------GUC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ANGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----AGU 1981 -GCA-U--(- GUA--)-AUG -U-GUAUU-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--N| AUU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC NA-------- CGAG-C--GC AACCC-UU-G |-CC--GCC- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-GGC-GN-N A-CU-G-CCG --GG(-NU-C AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UG -GA--CAAAG GGA-A-G-C- GA-CCC-U(G 2881 -CGA)AGGU- ---------- GA-GCAAA-U CCCAA-AAAU -AA-U-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGG-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGC-GGA GUC-GG-UG- NCN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cn.morbi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Catonella morbi. ACCESSION No information KEYWORDS No information. SOURCE Catonella morbi. ORGANISM Catonella morbi. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Evidence for the placement of the Gram-negative Catonella morbi (Moore and Moore) and Johnsonella ignava (Moore and Moore) within the Clostridium subphylum of the Gram-positive bacteria on the basis of 16S rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 45, 855-857 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87151 BASE COUNT 388 a 322 c 464 g 289 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G-GAG----A UUAC-GGACG GA-------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAA GACU----GU AAU|UCU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CCUA---U -ACAG-G-GG 421 -GAU-AG-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--G UAAGACC-GC 481 AU-AAG---- ---------- -------U-C GG-U--U-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UG-AU----C GG--GAAA-- ---UGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--A- G--GUA---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CCA-G---UU 721 GG-CA-GG-( GU-AAA-AG) -C-CUACC-A A|-AGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UGA---GAGU G-GAA-GC-A GG-GGG-C(- UC-A)A-CCC -CC-U-GAC- 1321 -UGCU-CCCA A-AAC-UGUA A-AACUU-GA GUA-----UG G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -UU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -NCUGCUG-- ---------- ---------- ---------G 1501 ACC--AA-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GC-UGG -GA-UGC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------CAU -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC CGG-UC-UUG AGA-UC|--- ---------C ---UCCUG-- -AA----UAC 1981 -UGA---G(- UAAUG)--UC -A-GUAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-CU-A |-UU--UUU- 2281 AG--UAGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GU -UA--CAGAG GGA-A-G-C- GA-AGN-U(G 2881 -UGA)NUCG- ---------- GA-GCAAA-U CUCAG-AAAG -GC-U-GCC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CU-GC-CG A-AGGC-AGG UCU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.1.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.1.9 C.AMINOVALERICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.1.9 C.AMINOVALERICUM_SUBGROUP. ORGANISM 2.16.4.1.9 C.AMINOVALERICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.xylano 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium xylanophilum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium xylanophilum. ORGANISM Eubacterium xylanophilum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34628|g762794 BASE COUNT 398 a 325 c 442 g 312 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G-AAG----C AU---CUCUC CCGAAGAUUG AA-------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------A GAUUGAUUCA UUUGAG---- AUG|ACU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U GU-G--A-CU ---GUC-(-- --------AC 541 AU-------- -)-GAC---A GA-CA----C AU--CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCNC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GU -G|-GC-AA- 1261 G-GC-AAG|U CAG---AUGU G-AAA-UG-N CG-GGG-C(- UC-A)A-CCC -CG-N-NAC- 1321 -UGCA-UUUG A-AAC-UGUC U-AGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -AU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-CCC--- ---------- 1681 -(-AC-A-)- ---------- ---------- -G-------- -------GGN -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGA -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UGCUG-- -AC----CGU 1981 -UCC---U(- UAGUC)--GG -A-ACUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GA(-GA-C AA)-UCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-UCA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAAG UGA-A-G-C- GA-CCC-U(G 2881 -UGA)AGGU- ---------- AA-GCCAA-C CACAA-AAAG -GU-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGC-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-NNG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-AU-GCCC -GAA-G-CCG 3121 G-UGN-C-CC -AA-CC---- ---------- ---------- -----(---- -NUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CG A-AGGU-GGA GCC-AA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.populeti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium populeti. ACCESSION No information KEYWORDS No information. SOURCE Clostridium populeti. ORGANISM Clostridium populeti. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71853 BASE COUNT 405 a 330 c 466 g 306 t 2869 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G-AAG----C AC---CAAAA GCGGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA GCAUUU---- GUG|ACU--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAG-A-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-UG 481 AU-AAU---- ---------- -------A-A UG-U--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GGG---A GG-AC----A UU--CAAA-- ---GA----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GU -G|-GC-GU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-GAC- 1321 -UGCA-UUUG A-AAC-UAUC A-UGCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-UCA--- ---------- 1681 -(-AA-A-)- ---------- ---------- -G-------- -------ACC -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGU 1981 -CCC---G(- UAACG)--GG -G-ACUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UAGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-NC -NA--CAAAG UGA-A-G-C- AG-CCU-C(G 2881 -UGA)GAGU- ---------- GA-GCAAA-U CACAA-AAAA -G--C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AC-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-NU-GC-CG A-AGGU-GGA GCC-NA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGN--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aminoval 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aminovalericum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aminovalericum. ORGANISM Clostridium aminovalericum. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23929 ATCC 13725 = VPI 4212 (T) = DSM 1283 (T) BASE COUNT 406 a 331 c 465 g 320 t 2854 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G UU---AAUAA GCGGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAAGC GNAGUU---- AAC|-UU--- AGUG-GCGG- 361 -C-NN-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CU-- G(-GAAA-)C -GGUU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-A UA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G UG--AAAA-- ---AGA---U UNA-GUUCAA 601 C-(------- ----UUC--- ---)------ GUUGAAC--| ----UC--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-CU- 1261 G-GU-AAG|U CAG---GUGU G-AAA-GC-C NC-GGG-C(- UC-A)A-CCC -CG-G-NAU- 1321 -UGCA-CUUG A-AAC-UACC C-GACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-UCC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------GAC -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCC---G(- UAAUG)--GG -A-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAAG AGA-A-G-C- AA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCAA-AAAG -GU-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-UGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-AA-UG- ACU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aminova2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aminovalericum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aminovalericum. ORGANISM Clostridium aminovalericum. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73436|g437744 DSM 1283 (T) = VPI 4212 (T) = ATCC 13725 BASE COUNT 391 a 316 c 440 g 302 t 2927 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....UU--A ACAC-AUGCA A-GUC--AAC 121 G--GA----G UU---AAUCA AGCGCGAA-- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GGAAG CUUGUU---- AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------CC-- G(-GAAA-)C -GGUU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-A UA-C--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGU---A CA-GU----G UG--AAAA-- ---AGA---U UAA-GUUCAA 601 C-(------- ----UUC--- ---)------ GUUCAAC--| ----UC--U- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|UGGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GCUC| UAUC-AG-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CNNGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-AC -G|-GU-CU- 1261 G-GU-AAG|U CAG---GUGU G-AAA-NNCC CG-GGG-C(- UC-A)A-CCC -CG-G-A-U- 1321 -UGCA-CUUG A-AAC-UACC C-GACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAAACA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-UCC--- ---------- 1681 -(-AU-AA)- ---------- ---------- -G-------- -------GAC -UUCGG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGUGGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCC---G(- UAAUG)--GG -A-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-A-A |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CAG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AC -UA--CAAAG AGA-A-G-C- AA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCCAA-U CUCAA-AAAG -GU-C-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-UGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AU-AU-GCCC -GAA-G-UCA 3121 G-UGA-C-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CG A-AGGU-GGA GCC-AA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.2 C.PROPIONICUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.2 C.PROPIONICUM_GROUP. ORGANISM 2.16.4.2 C.PROPIONICUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.propioni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium propionicum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium propionicum. ORGANISM Clostridium propionicum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77841|g572659 BASE COUNT 414 a 343 c 461 g 300 t 2858 others ORIGIN 1 .......... .......... .......... ....NNNNNN GAGAGU(U-U G)U-CCU|-G 61 GCUCAG-GUG -AANC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----A AU---AUGCA AUCGGA---- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---AGGAAGA UUACAU---- AUU|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GU-GUGGG- CAA--CCU-G C-CCUG---U -ACUG-U-GG 421 -AAU-AA-UC A--------- ------CU-- G(-GAAA-)C -GGUG-A--C UAAUACC-GC 481 AU-GUC---- ---------- -------A-U UG-C--G-AG ---AGG-(-- --------GC 541 AU-------- -)-CCU---C UU-GC----A AG--AAAA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CAGGC|C-AC -CAUUG-G-G 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGC--GC-GU 961 G-A-AG-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--CUUC| UAUC-AA-CA 1021 --GG-GAC-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GAG-UAG-GC -G|-GC-AU- 1261 G-GU-AAG|U UAG---AUGU G-AAA-GC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GAU- 1321 -UGCA-UUUA A-AAC-UAUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -A-CCUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UAA-CAAAG UGA-C-G-C- AA-AAC-G(G 2881 -CGA)CGUC- ---------- GA-GCAAA-U CACAA-AAAC -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-UCG 3121 G-UGA-C-CU -GA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-CC-GC-CG A-AGGU-GAA GCC-AG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGN--UG NAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.neopropi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium neopropionicum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium neopropionicum. ORGANISM Clostridium neopropionicum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76746|g572655 BASE COUNT 412 a 338 c 456 g 303 t 2867 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 AG-GA----G UA---UGAAA UCUGAGA--- ---------- ---------- ---------- 181 ---------- ---------- --------GC (--UU----- ---------- ---------- 241 --------CG -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---AGGAUGA UUUCAU---- AUU|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GU-GUGGG- CAA--CCU-G C-CCUG---U -ACUG-U-GG 421 -AAU-AA-UC A--------- ------CU-- G(-GAAA-)C -GGUG-A--C UAAUACC-GC 481 AU-GUC---- ---------- -------A-U CC-G--A-AG ---AGG-(-- --------GC 541 AU-------- -)-CCU---C UU-UG----G AG--ANNA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--GUA---- 661 ----CAGG-- AU---GG-|G CCCGC----- -AU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--CUUC| UAUC-AA-CA 1021 --GG-GAC-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CG-U- A-CCU-G-AU A-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GAG-UAG-GC -G|-GC-AU- 1261 G-GU-AAG|U UAG---AUGU G-AAA-GC-C CG-AGG-C(- UU-A)A-CCU -CG-G-GAU- 1321 -UGCA-UUUA A-AAC-UAUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGG -GG-G----- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GU-(-AA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -A-CCUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(---- -)--AUGU-U 2221 AG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UAGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UAA-CAAAG UGA-C-G-C- AA-AAC-G(G 2881 -CGA)CGUC- ---------- GA-GCAAA-U CACAA-AAAC -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-A-)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-UCG 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-G-A G-CC-GC-CG A-A-GU-GAA GCC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)G- UGCCGGCCUG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pilifor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium piliforme.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium piliforme. ORGANISM Clostridium piliforme. REFERENCE 1 AUTHORS Goto,K. and Itoh,T. TITLE Detection of Bacillus piliformis by specific amplification of ribosomal sequences JOURNAL Jikken Dobutsu 43 (3), 389-394 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S72349|g632716 BASE COUNT 173 a 140 c 174 g 138 t 3751 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 ....AA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GA-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UU -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----AGG 1981 -CUA-C-G(- UAAA-)-GUA -G-CUU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AU -AA--CAAAG UGA-A-G-C- GA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-G CACAU-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-A..... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.TyzzRT 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RT. str. RT. ACCESSION No information KEYWORDS No information. SOURCE str. RT. str. RT. ORGANISM str. RT. REFERENCE 1 AUTHORS Tsuji,M., Kono,R., Takahashi,T., Ishihara,C., Iwai,H., Goto ,K. and Ito,T. TITLE Taxonomic status of the Tyzzer's organisms based on the 16S ribosomal RNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14639 isolate_name= RT NB: Genbank entry gives name as Bacillus piliformis BASE COUNT 427 a 304 c 442 g 309 t 2894 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----G AU---AUAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UAG-CG (--UU----- ---------- ---------- 241 -------AAU -)CG-CUA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AUAU---- AUU|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -ACAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------C-U AA-C--A-GU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A UA-GU----U AG--AAAA-- ---AC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAGG-- AGG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-AG) -C-AUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-GA-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C UG-GGG-C(- UC-A)A-CUC -CA-G-CGC- 1321 -UGCA-UAAG A-AAC-UAUU U-AACUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GA-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UU -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----AGG 1981 -CUA-C-G(- UAAA-)-GUA -G-CUU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AU -AA--CAAAG UGA-A-G-C- GA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-G CACAU-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-CCU 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CA-GU-CG A-AGGU-GAA GCC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.piliform 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium piliforme.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium piliforme. ORGANISM Clostridium piliforme. REFERENCE 1 AUTHORS Duncan,A.J., Carman,R.J., Olsen,G.J. and Wilson,K.H. TITLE Assignment of the agent of Tyzzer's disease to Clostridium piliforme comb. nov. on the basis of 16S rRNA sequence analysis JOURNAL Int. J. Syst. Bacteriol. 43, 314-318 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L07416 BASE COUNT 411 a 299 c 433 g 290 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----G AU---AUUAU A--------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CG (--CG----- ---------- ---------- 241 --------UG -)CG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CANGAU---- AUU|-UU--- AGCG-GCGG- 361 -A-CN-GG-N GAGU---AAC -GC-GNGGG- UAA--CCU-G C-CCUA---U -ACAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-AG 481 AU-AAG---- ---------- -------C-U AA-C--A-GU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A CA-GU----U AG--AAAA-- ---AC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAGG-- AGG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-AG) -C-AUACC-A A|-GGC-AA- CGA------- -----UC-NG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -NUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -A-A-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUN G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-GA-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-NA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGNG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CN-GGGN|G UAAA-GGGN- GAG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CAU---ANGN G-AAA-UU-C UG-GGG-C(- UC-A)A-CUC -CA-G-CGC- 1321 -NGCA-UAAG A-AAC-UAUU U-AACUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACN-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-N-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UU -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAC-N---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG --GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----AGA 1981 -CUA-C-G(- UAAA-)-GUA -G-UUU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC CACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAC---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CNN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-ANUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AC -AA--CAAAG UGA-A-G-C- GA-GAC-A(G 2881 -UAA)UGUG- ---------- GA-GCAAA-G CACAU-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-N-A--- --CGA-UGGG A--GU-UGG- AA-GC-GCCC -GAA-G-CCU 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CA-GU-CG A-AGGU-GAA GCC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCN-NN.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.TyzzRJ 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RJ. str. RJ. ACCESSION No information KEYWORDS No information. SOURCE str. RJ. str. RJ. ORGANISM str. RJ. REFERENCE 1 AUTHORS Tsuji,M., Kono,R., Takahashi,T., Ishihara,C., Iwai,H., Goto ,K. and Ito,T. TITLE Taxonomic status of the Tyzzer's organisms based on the 16S ribosomal RNA sequences JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14638 isolate_name= RJ NB: Genbank entry gives name as Bacillus piliformis BASE COUNT 425 a 308 c 442 g 306 t 2895 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----G AU---AUUAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CG (--CG----- ---------- ---------- 241 --------UG -)CG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CAUGAU---- AUU|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -ACAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACU-GG 481 AU-AAG---- ---------- -------C-U AA-C--A-GU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A CA-GU----U AG--AAAA-- ---AC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAGG-- AGG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-UG-( GU-AAA-AG) -C-AUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-GA-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C UG-GAG-C(- UC-A)A-CUC -CA-G-CGC- 1321 -UGCA-UAAG A-AAC-UAUU U-AACUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GA-A----- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- --------UU -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----AGG 1981 -CUA-C-G(- UAAA-)-GUA -G-UUU---- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UN--CUU- 2281 AG--UAGC-C AG-CAC---- ---------- ---------- ----(---CU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AC -AA--CAAAG UGA-A-G-C- GA-GAC-A(G 2881 -UAA)UGUG- ---------- GA-GCAAA-G CACAU-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-CCU 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CA-GU-CG A-AGGU-GAA GCC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.colinum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium colinum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium colinum. ORGANISM Clostridium colinum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76748|g572637 BASE COUNT 415 a 309 c 444 g 304 t 2904 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU UUAUGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAU AAAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -ACAC-A-GG 421 -GAU-AA-CA U--------- ------UG-- A(-GAAA-)U -UGAU-G--C UAAUACC-UG 481 AU-AAG---- ---------- -------C-C AA-C--A-GU ---A-G-(-- --------GC 541 AU-------- -)-CUA---C AA-GU----U GG--AAAA-- ---AC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAGG-- AGG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--CUUC| UAUC-GA-CA 1021 --GG-GAA-- GA-------- ---------( ----AAUAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-AA--GAAG ---------C 1141 -ACCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GU-UA- 1261 U-GC-AAG|U CAU---AUGU G-AAA-UU-C UG-GGG-C(- UC-A)A-CCU -CA-G-GGC- 1321 -UGCA-UAAG A-AAC-UGUG U-AACUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GA-A----- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- --------UU -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---CGAUG-- -AC----AAU 1981 -CUG-U-G(- UAAU-)-GCA -G-ACU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UAGC-C AG-CAW---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GU -AA--CAAAG UGA-A-G-C- AA-GAU-A(G 2881 -UGA)UAUG- ---------- GA-GCAAA-G CACAA-AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-GCCC -GAA-G-CCU 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGAG-G-A G-CA-GU-CG A-AGGU-GAA GCC-AG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCG-C---U GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN117 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN117.. ACCESSION No information KEYWORDS No information. SOURCE clone UN117. ORGANISM clone UN117. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63599 BASE COUNT 90 a 50 c 95 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UAAG A-AAC-UGUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN11 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN11.. ACCESSION No information KEYWORDS No information. SOURCE clone UN11. ORGANISM clone UN11. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63595 BASE COUNT 90 a 50 c 95 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UAAG A-AAC-UGUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN15 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN15.. ACCESSION No information KEYWORDS No information. SOURCE clone UN15. ORGANISM clone UN15. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63601 BASE COUNT 90 a 50 c 95 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UAAG A-AAC-UGUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN68 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN68.. ACCESSION No information KEYWORDS No information. SOURCE clone UN68. ORGANISM clone UN68. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63628 BASE COUNT 90 a 50 c 95 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UAAG A-AAC-UGUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN16 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN16.. ACCESSION No information KEYWORDS No information. SOURCE clone UN16. ORGANISM clone UN16. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63602 BASE COUNT 90 a 50 c 95 g 65 t 4076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UU- 1261 G-AU-AAG|U CAU---AUGU G-AAA-UU-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -UGCA-UAAG A-AAC-UGUC A-AGCUA-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--AG-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.3 C.LENTOCELLUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.3 C.LENTOCELLUM_GROUP. ORGANISM 2.16.4.3 C.LENTOCELLUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Epp.mtyA1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Epulopiscium sp. str. morphotype A1. ACCESSION No information KEYWORDS No information. SOURCE Epulopiscium sp. str. morphotype A1. ORGANISM Epulopiscium sp. REFERENCE 1 AUTHORS Angert,E.R., Clements,K.D. and Pace,N.R. TITLE The Largest Bacterium: A Phylogenetic Analysis of Epulopiscium-like Surgeonfish Symbionts JOURNAL Nature 362, 239-241 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99572 isolate_name= morphotype A1 NB: IDENT:general C.aminoval area; member fish-gut-symb group BASE COUNT 406 a 299 c 427 g 301 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUUA---U -ACUG-U-GG 421 -AAU-AA-CG U--------- ------UU-- G(-GAAA-)C -AAAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------C-C AU-U--U-UC ---UUC-(-- --------GC 541 AU-------- -)-GGG---G AG-AA----U GG--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CCUGC----- -GG|----AA G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-UA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-UU-G-A U-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--GAUC| UAGC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ----AAGAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA U-AA--GAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GUG-UAG-GC -G|-GU-AU- 1261 G-GU-AAG|U CAG---UUGU G-AAA-GA-U UA-AAG-C(- UC-A)A-CUU -UA-A-AAU- 1321 -UGCA-ACUG A-AAC-UAUC A-AACUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -GG-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGU -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)A-CA- AUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---CUAUG-- -AC----AGG 1981 -GGG---G(- UAAUG)--CC -C-CUUU--- UU-------- -CUAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUAG------ ----GA--C| AUA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --AG(-GA-U AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG GGA-G-G-C- AA-AGC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-C CCCAA-AAAG -GU-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGA-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GG-GCCC -GAC-A-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.lentocel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium lentocellum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium lentocellum. ORGANISM Clostridium lentocellum. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71851|g431247 BASE COUNT 403 a 338 c 447 g 309 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUCCA A-GUC-GANC 121 G--AA----- -----CUGAG A--------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- NNGANC---- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCCA---U -ACAG-G-GG 421 -GAU-AA-CG U--------- ------UU-- G(-GAAA-)C -GAAC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-U AU-C--G-GU ---AUUC(-- --------GC 541 UU-------- -)-GAU---U AU-NA----U AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GU-UA- 1261 G-UU-AAG|U CAG---AAGU G-AAA-UU-U AG-GGG-C(- UC-A)A-CCU -CU-A-AGC- 1321 -UGCU-UCUG A-AAC-UGAU G-AACUA-GA GUG-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-CGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-CGG -GG-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGU -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|A-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---CGAUG-- -AC----CGG 1981 -NCU-G--(- UAAU-)-CGC -U-CCUU--- CC-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----GA--C| AUN-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UG--UUU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAAAG GGA-A-G-C- GA-UCU-C(G 2881 -CGA)GAGU- ---------- CA-GCAAA-C CUCAA-AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GN-NN-GCCC -AAC-G-CCG 3121 G-UGA-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-GU A-AGGC-AAA ACC-AA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.lentoce2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium lentocellum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium lentocellum. ORGANISM Clostridium lentocellum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76162|g572652 BASE COUNT 394 a 315 c 430 g 302 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----- -----CUGCN ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -NNNNN---- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -GCAG-G-GG 421 -GAU-AA-CG U--------- ------UU-- G(-GAAA-)C -GAAC-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------C-U AU-C--G-GU ---ANUC(-- --------GC 541 AU-------- -)-GAU---U AU-UA----U AG--UAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GCA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-NCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-UU-AAG|U CAG---AAGU G-AAA-UU-U AG-GGG-C(- UC-A)A-CCU -CU-A-AGC- 1321 -UGCU-UCUG A-AAC-UGAU G-AACUA-GA GUG-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCGAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-CGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-CGG -GG-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGU -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|A-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---CGAUG-- -AC----CGG 1981 -NNN-N--(- UAAU-)-NNN -N-CCUU--- UC-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----GA--C| AUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UAGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAAAG GGA-A-G-C- GA-UCU-C(G 2881 -CGA)GAGU- ---------- CA-GCAAA-C CUCAA-AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GG-GG-GCCC -AAC-G-CCG 3121 G-UGA-C-CC -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGC-AAA ACC-AA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAN--AAGG UAGCC-GUAU C(GGA-A)N. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Epp.mtyB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Epulopiscium sp. str. morphotype B. ACCESSION No information KEYWORDS No information. SOURCE Epulopiscium sp. str. morphotype B. ORGANISM Epulopiscium sp. REFERENCE 1 AUTHORS Angert,E.R., Clements,K.D. and Pace,N.R. TITLE The Largest Bacterium: A Phylogenetic Analysis of Epulopiscium-like Surgeonfish Symbionts JOURNAL Nature 362, 239-241 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99574 isolate_name= morphotype B NB: IDENT:general C.aminoval area; member fish-gut-symb group BASE COUNT 397 a 311 c 430 g 304 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CUUGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAA G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUA---U -AGAA-U-GG 421 -AAU-AA-CG U--------- ------UU-- G(-GAAA-)C -AGAC-G--C UAAUACC-AU 481 AU-AAC---- ---------- -------C-U AA-U--U-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UG-GU----U AG--CAAA-- ---GAU---- ---------- 601 --(------- ---UUU---- ---)------ ---------| ----AU--C- G--CUA---- 661 ----UAGG-- AUG---G-|A CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GUG-UAG-GC -G|-GC-AU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CUU -CA-A-GAU- 1321 -UGCA-UCUG A-AAC-UGCU A-AGCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GC-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGG -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---UUAUG-- -AU----CGG 1981 -AGG---G(- UAAUG)--CC -U-CUUU--- CU-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----GG--C| AUA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UAGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCA --AG(-GA-C AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAAAG GGA-A-G-C- AU-AGC-G(G 2881 -UAA)CGUG- ---------- AA-GCAAA-C CCCAA-AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGUGGUC- (UGCAAC-U- C)-GACCACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGA- GG-GG-GCCC -AAC-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CU A-AGGC-AAA AUC-AA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Epp.mtyA2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Epulopiscium sp. str. morphotype A2. ACCESSION No information KEYWORDS No information. SOURCE Epulopiscium sp. str. morphotype A2. ORGANISM Epulopiscium sp. REFERENCE 1 AUTHORS Angert,E.R., Clements,K.D. and Pace,N.R. TITLE The Largest Bacterium: A Phylogenetic Analysis of Epulopiscium-like Surgeonfish Symbionts JOURNAL Nature 362, 239-241 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99573 isolate_name= morphotype A2 NB: IDENT:general C.aminoval area; member fish-gut-symb group BASE COUNT 406 a 308 c 418 g 314 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----C U----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- -AG|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUA---U -ACAG-U-GG 421 -AAU-AA-CG U--------- ------UU-- G(-GAAA-)C -AGAC-G--C UAAUACC-AC 481 AU-AAC---- ---------- -------C-U AU-A--A-UG ---GUC-(-- --------GC 541 AU-------- -)-GAU---U AU-UA----U AG--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UAGG-- AUG---G-|A CCUGC----- -GU|----UG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-UA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G AA(--UU-CG --)UU-UCAU AAA--CUUC| UAUC-AG-CA 1021 --GG-GAA-- GA-------- ---------( ----AAUAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AC U-AA--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GUG-UAG-GC -G|-GC-AU- 1261 G-GU-AAG|U CAG---AUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CUU -CA-A-GAU- 1321 -UGCA-UCUG A-AAC-UGCU A-AGCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GC-CU---- ---------- 1681 -(-UA-CG)- ---------- ---------- ---------- -------GGG -UUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|A-CCU- G-GGAAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UC|--- ---------C ---UUAUG-- -AC----UGA 1981 -GAA-G--(- UAAU-)-UUU -C-UCUU--- UC-------- -CUAG----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- CUAG------ ----GA--C| AUA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UAGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --AG(-GA-U AA)-CUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GC -UA--CAAAG GGA-U-G-C- AU-AGC-G(G 2881 -UAA)CGUG- ---------- AA-GCCAA-C CCCAA-AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGAGCUC- (UGCAAC-U- C)-GAGCUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGA- GG-GG-GCCC -AAC-G-UCA 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GC-CU A-AGGC-AAA AUC-AA-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.4.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.4.4 EUBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.4.4 EUBACTERIUM_GROUP. ORGANISM 2.16.4.4 EUBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.halphlum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium halophilum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium halophilum. ORGANISM Clostridium halophilum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77837|g572645 BASE COUNT 382 a 323 c 460 g 290 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG GCUUUAACUA A--------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- GAAGAUAGAG CUGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUG---U -ACAG-A-GG 421 -GAU-AG-CC G--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-UC 481 AU--AA---- ---------- -------G-A CC-AC-A-GU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A CA-GU----G GC--CAAA-- ---AU----- ---------- 601 --(------- ---UCAG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AA 1021 --GG-GAA-- GA-------- ---------( -----AAAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-CA- 1261 G-GC-AAG|C CAG---AGGU U-AAA-GG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UA-- 1321 -AGCC-UUUG G-AAC-UGUA U-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UN-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUC-AC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CUUUG-- -CU----AGG 1981 -UUU---G(- UAAUG)--GA -A-CCCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA ...)...... .......... .......... ..CCC-UU-A |-UCA-UUU- 2281 AG--UUGC-A UC-AGG---- ---------- ---------- ---U(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG GGC-A-G-C- UA-AAG-A(G 2881 -UAA)UCUG- ---------- GA-GCUAA-U CCCAA-AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUGGGC- (UGCAAC-U- C)-GCCCAUA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GA-CUA- GG-GC-ACCC -GAA-G-UCA 3121 G-UUA-U-CC -AA-CU---- ---------- ---------- -----(---- -UUUAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CU-GC-CG A-AGGU-GAA AUC-GG-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aminobut 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aminobutyricum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aminobutyricum. ORGANISM Clostridium aminobutyricum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76161|g572627 BASE COUNT 390 a 311 c 446 g 294 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UGCA A-GUC-GAGC 121 G--GU-A--U AUA--UCUGA ACAAA----- ---------- ---------- ---------- 181 ---------- ---------- --------UC (--UU----- ---------- ---------- 241 --------CG -)GA------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -------AGA GUGAAG--GU AUA|-GA--G AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCCA---U -ACAG-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAAACC-UC 481 AU-AAC---- ---------- -------G-C GG-A--A-GA ---UUC-(-- --------AC 541 AU-------- -)-GAG---U CU-UU----C GC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GCUC| UGUC-CU-UG 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-UG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UU- 1261 G-GU-AAG|C GUG---GGGU G-AAA-GG-C AA-UAG-C(- UU-A)A-CUA -UU-G-UA-- 1321 -AGCC-UUGC G-AAC-UGUC A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GG-UC---- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- -------GAC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AGG 1981 -ACU-U--(- UAAC-)-AGG -U-CCCU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- --------C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-C-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCAAA-U CUCA--AAAA -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-GCCC -GAA-G-UUG 3121 G-C-C-A--- ---------- ---------- ---------- -----(---- AUAAAUA--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G G-UU-AC-CU A-AGGC-GAA AUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN48 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN48.. ACCESSION No information KEYWORDS No information. SOURCE clone UN48. ORGANISM clone UN48. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63620 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN82 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN82.. ACCESSION No information KEYWORDS No information. SOURCE clone UN82. ORGANISM clone UN82. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63635 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN43 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN43.. ACCESSION No information KEYWORDS No information. SOURCE clone UN43. ORGANISM clone UN43. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63617 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN38 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN38.. ACCESSION No information KEYWORDS No information. SOURCE clone UN38. ORGANISM clone UN38. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63614 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN24 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN24.. ACCESSION No information KEYWORDS No information. SOURCE clone UN24. ORGANISM clone UN24. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63607 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN17 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN17.. ACCESSION No information KEYWORDS No information. SOURCE clone UN17. ORGANISM clone UN17. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63603 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN105 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN105.. ACCESSION No information KEYWORDS No information. SOURCE clone UN105. ORGANISM clone UN105. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63591 BASE COUNT 79 a 53 c 104 g 63 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-UC- 1261 U-GU-AAG|C GAG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUUC G-AAC-UGUG G-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.saphen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium saphenum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium saphenum. ORGANISM Eubacterium saphenum. REFERENCE 1 AUTHORS Cheeseman,S.L., Hiom,S.J., Weightman,A.J. and Wade,W.G. TITLE Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infirmum sp. nov. and Eubacterium tardum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 957-959 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U65987|g1513214 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 362 a 296 c 419 g 266 t 3033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--A ACU--ACAUG CAGAC----- ---------- ---------- ---------- 181 ---------- ---------- --------AC (--UU----- ---------- ---------- 241 --------CG -)GU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -------AGA AGCGAG--UA GCG|-GA--A AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GU-GG- CAA--CCU-G C-CCUU---C -ACAG-A-GG 421 -UAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAAACC-AC 481 AU-AAA---- ---------- -------A-U CA-U--A-GG ---UUC-(-- --------GC 541 AU-------- -)-GAA---C CA-AA----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-U-A U-GAA--G-G CC(--UU-UG --)GG-UUGU AAG--CCUC| UGUC-CU-AG 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-CU- 1261 A-CU-AAG|C GCG---GGGU G-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -AGCC-UUGC G-AAC-UGGC A-GACUU-GA GUG-----CA A-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 AUU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-ACGA G--CA-CU-- -------A|G -GU-GU-CGG -GA-C----- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- --------GU -CUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUG-U C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CU--G 1861 C-G--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----GUA 1981 -CCC-U--(- UAAU-)-CGG -G-UAUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GG(-GA-- AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-A-G-C- GA-UAC-C(G 2881 -CAA)GGGG- ---------- GA-GCAAA-U CUUA--AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.SC87K 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. SC 87K. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. SC 87K. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36275|g530294 isolate_name= SC 87K NB: duplicates Eub.SC87K2? BASE COUNT 404 a 342 c 472 g 292 t 2866 others ORIGIN 1 .......... .......... ........GU GCUGCAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG CCAUAAAAG- ---------- ---------- ---------- 181 ---------- ---------- ----GAC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --AUUAUAUG GCGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC G--------- ------GA-- G(-GAGA-)C -UACG-AU-U UAAUACC-UC 481 AU-AAA---- ---------- -------G-C AA-A--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G CG-AU----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---AUAA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAAG-- AUG---G-|U CCCGC----- -GU|----CU GAAGUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AGC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--CUUC| UGUC-CA-AA 1021 --GG-GAA-- GA-------- ---------( -----AAAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-UG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-G-- 1201 AGU-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GU-UU- 1261 A-GC-AAG|C GUA---GGGU U-UAA-GG-C GA-CAG-C(- UC-A)A-CCA -UC-G-UA-- 1321 -UGCCCUUGC G-AAC-UGUG UAGACUU-GA GUA-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GC-UC---- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- -------GAG -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU--AAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CACUG-- -AA----GUA 1981 -CCG-G-G(- UAAUG)-CCG -G-UAUGU-- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GG(-GA-G AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-GU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-CGUC -CA--CAGAG GGA-A-G-C- GA-AAG-A(G 2881 -CGA)UCUU- ---------- AA-GCCAA-A CCAA--AAAG -GC-G-GUC- CCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -GAA-G-UCG 3121 G-U-C----- ---------- ---------- ---------- -----(---- AAUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G G-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAC C(CGU-A)UC CGUG...... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.SC87K2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. SC 87K. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. SC 87K. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13037|g551083 isolate_name= SC 87K NB: duplicates Eub.SC87K? BASE COUNT 389 a 326 c 453 g 277 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG CCAUAAAAG- ---------- ---------- ---------- 181 ---------- ---------- ----GAC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --AUUAUAUG GCGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUU---C -ACAG-A-GG 421 -GAU-AG-CC G--------- ------GA-- G(-GAGA-)C -UACG-AU-U UAAUACC-UC 481 AU-AAA---- ---------- -------G-C AA-A--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G CG-AU----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---AUAA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----AAAG-- AUG---G-|U CCCGC----- -GU|----CU GAAGUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AGC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--CUUC| UGUC-CA-AA 1021 --GG-GAA-- GA-------- ---------( -----AAAGA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-UG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGC-G-- 1201 AGU-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GU-UU- 1261 A-GC-AAG|C GUA---GGGU U-UAA-GG-C GA-CAG-C(- UC-A)A-CCA -UC-G-UA-- 1321 -UGCCCUUGC G-AAC-UGUG UAGACUU-GA GUA-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GC-UC---- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- -------GAG -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU--AAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CACUG-- -AA----GUA 1981 -CCG-G-G(- UAAUG)-CCG -G-UAUGU-- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- ---------- ----GA--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GG(-GA-G AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-GU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-CGUC -CA--CAGAG GGA-A-G-C- GA-AAG-A(G 2881 -CGA)UCUU- ---------- AA-GCCAA-A CCAA--AAAG -GC-G-GUC- CCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -GAA-G-UCG 3121 G-U-C----- ---------- ---------- ---------- -----(---- AAUAAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G G-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.nodat2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium nodatum str. AK-5 ATCC 33099. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium nodatum str. AK-5 ATCC 33099. ORGANISM Eubacterium nodatum. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33099 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13041|g551087 isolate_name= AK-5 BASE COUNT 364 a 299 c 423 g 265 t 3025 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--------- -----AGAAA UCA------- ---------- ---------- ---------- 181 ---------- --------CU UAAAGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AGACU UAAG------ ---------- ---------- ---------- 301 ---------- ---------- --------AG AUGGAG---- ---|------ AGCA-GCGG- 361 -A-CG-GG-U GAGG---AAC -GC-GUGGG- AAA--CCU-G C-CCUU---G -ACAG-G-AG 421 -GAU-AG-CC G--------- ------AG-- A(-GAAA-)U -UUCG-AU-U UAAUACU-UC 481 AU-AAA---- ---------- -------G-C AG-A--G-CA ---UUC-(-- --------GC 541 AU-------- -)-GGA---U GA-AC----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---AUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|U CCAGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UA-AG-( GU-ACC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA -)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--CUUC| UGUC-CA-AA 1021 --GG-GAA-- GAA------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-UG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GU-UA- 1261 A-GU-AAG|C GUA---GGGU U-UAA-GG-C GA-CAG-C(- CC-A)A-CUG -UC-G-UA-- 1321 -UGCC-CCGC G-AGC-UGUU U-AACUU-GA GUA-----CA G-GA-GGGGA AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-C UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GC-UC---- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- -------GAG -UUCGG-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CACUG-- -AA----AGC 1981 -UCG-G-U(- UAAAA)-CUG -A-GCCC--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GG(-GA-G AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -CA--CAGAG GGA-A-G-C- GA-GAG-A(G 2881 -CGA)UCUU- ---------- AA-GCGAA-- ACCAA-AAAG -GC-G-GUC- CCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.nodatm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium nodatum str. AK-5 ATCC 33099. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium nodatum str. AK-5 ATCC 33099. ORGANISM Eubacterium nodatum. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33099 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36274|g530291 isolate_name= AK-5 BASE COUNT 375 a 313 c 441 g 277 t 2970 others ORIGIN 1 .......... .......... ........GU GCUGCAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--------- -----AGAAA UCA------- ---------- ---------- ---------- 181 ---------- --------CU UAAAGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AGACU UAAG------ ---------- ---------- ---------- 301 ---------- ---------- --------AG AUGGAG---- ---|------ AGCA-GCGG- 361 -A-CG-GG-U GAGG---AAC -GC-GUGGG- AAA--CCU-G C-CCUU---G -ACAG-G-AG 421 -GAU-AG-CC G--------- ------AG-- A(-GAAA-)U -UUCG-AU-U UAAUACU-UC 481 AU-AAA---- ---------- -------G-C AG-A--G-CA ---UUC-(-- --------GC 541 AU-------- -)-GGA---U GA-AC----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---AUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AAGG-- AUG---G-|U CCAGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-UA-AG-( GU-ACC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA -)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--CUUC| UGUC-CA-AA 1021 --GG-GAA-- GAA------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-UG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GU-UA- 1261 A-GU-AAG|C GUA---GGGU U-UAA-GG-C GA-CAG-C(- CC-A)A-CUG -UC-G-UA-- 1321 -UGCC-CCGC G-AGC-UGUU U-AACUU-GA GUA-----CA G-GA-GGGGA AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-C UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GC-UC---- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- -------GAG -UUCGG-UGC 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---CACUG-- -AA----AGC 1981 -UCG-G-U(- UAAAA)-CUG -A-GCCC--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --GG(-GA-G AA)-CCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -CA--CAGAG GGA-A-G-C- GA-GAG-A(G 2881 -CGA)UCUU- ---------- AA-GCGAA-- ACCAA-AAAG -GC-G-GUC- CCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCG- GUG-GAU--- --CCG-UG.. .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.brachy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium brachy str. BR-179 ATCC 33089. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium brachy str. BR-179 ATCC 33089. ORGANISM Eubacterium brachy. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33089 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36272|g530290 isolate_name= BR-179 BASE COUNT 407 a 319 c 454 g 320 t 2876 others ORIGIN 1 .......... .......... ........GU GCUGCAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG UUUUGAAAA- ---------- ---------- ---------- 181 ---------- ---------- ----GAU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --AAUUUAAA AUGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCA-- ---------U -ACAA-A-GG 421 -GAU-AG-CA U--------- ------UU-- G(-GAAA-)C -GAAU-A--U UAAUACC-UU 481 AU-GAA---- ---------- -------A-C UU-A--A-CU ---AGU-(-- --------GC 541 AU-------- -)-GCU---A GG-UA----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GU|CUGACU GCCCUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GUUC| UGUU-CU-AG 1021 --GU-GAU-- GA-------- ---------( -----AAAC- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-ACC-U-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) UAC-U-GGAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GU -G|-GC-CU- 1261 U-UU-AAG|C GUA---GGGU A-UAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -CGCC-CUAU G-AAC-UGGA A-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UU-AGGAGG- AACA-UCAG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GG-UC---- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- -------GGC -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGA-GA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -UCU-U--(- UAAU-)-AGG -A-CCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- ---------- ----GA--C| AGA-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-G CUCA--AAAA -CC-A-GCC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-GCCC -AAA-G-UUG 3121 G-C-A-G-A- ---------- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----U-A-U G-CU-AC-CU A-AGGU-GAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAG G(AUC-C)CU G......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.brach2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium brachy str. BR-179 ATCC 33089. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium brachy str. BR-179 ATCC 33089. ORGANISM Eubacterium brachy. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33089 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13038|g551084 isolate_name= BR-179 BASE COUNT 392 a 305 c 435 g 306 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG UUUUGAAAA- ---------- ---------- ---------- 181 ---------- ---------- ----GAU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --AAUUUAAA AUGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCA-- ---------U -ACAA-A-GG 421 -GAU-AG-CA U--------- ------UU-- G(-GAAA-)C -GAAU-A--U UAAUACC-UU 481 AU-GAA---- ---------- -------A-C UU-A--A-CU ---AGU-(-- --------GC 541 AU-------- -)-GCU---A GG-UA----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GU|CUGACU GCCCUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--GUUC| UGUU-CU-AG 1021 --GU-GAU-- GA-------- ---------( -----AAAC- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-ACC-U-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUCC-GUG( CCA--GCAGC CGCGGUA-A) UAC-U-GGAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GU -G|-GC-CU- 1261 U-UU-AAG|C GUA---GGGU A-UAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -CGCC-CUAU G-AAC-UGGA A-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -AU-AGAU-A UU-AGGAGG- AACA-UCAG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GG-UC---- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- -------GGC -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- UUAA-GUGCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGA-GA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -UCU-U--(- UAAU-)-AGG -A-CCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- ---------- ----GA--C| AGA-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-G CUCA--AAAA -CC-A-GCC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-GCCC -AAA-G-UUG 3121 G-C-A-G-A- ---------- ---------- ---------- -----(---- -UAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----U-A-U G-CU-AC-CU A-AGGU-GAA ACC-AA-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.SMK197 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone SMK197.. ACCESSION No information KEYWORDS No information. SOURCE clone SMK197. ORGANISM clone SMK197. REFERENCE 1 AUTHORS Schuppler,M., Mertens,F., Schoen,G. and Goebel,U.B. TITLE Molecular characterization of nocardioform actinomycetes in activated sludge by 16S rRNA analysis JOURNAL Microbiology 141, 513-521 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78636|g509477 BASE COUNT 109 a 82 c 132 g 77 t 3976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... ........AA GAGGAAG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-UGGAA UCUU------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ------AUU- GAU|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGNN- GU---CAA-C C-UUUG---C -ACAG-G-GG 421 -GAU-AA-CG G--------- ------AC-- C(-GAAA-)G --UCA----C UAAUACC-GC 481 AU-GAG---- ---------- -------A-C CA-C--G-GU ---GUU-(-- --------GC 541 AU-------- -)-GAC---A CA-GA----G GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC---- G--GUG---- 661 ----CAAG-- ACG---G-|G CUCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UA- UGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AAAAC-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-A-UAUU G-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UGUC-CU-UG 1021 --GU-AGA-- AG-------- ---------( -----AGAAG A--------) ---------- 1081 ---------- ---------- A-GA-CGGU- A-GC...... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.W1471 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. W 1471. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. W 1471. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36273|g530293 isolate_name= W 1471; clone 1471-3 NB: duplicates Eub.W14712? BASE COUNT 400 a 328 c 450 g 323 t 2875 others ORIGIN 1 .......... .......... .........U GCUGCAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG UAAA------ ---------- ---------- ---------- 181 ---------- ---------G AAAUGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AGAUU UUC------- ---------- ---------- ---------- 301 ---------- ---------- -------AUU AUGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AG-CU A--------- ------CC-- C(-GAAA-)A -GGUG-A--U UAAUACC-CC 481 AUGAUGCA-- ---------- -------A-C AA-G--A-GA ---UAC-(-- --------AC 541 AU-------- -)-GUA---U CA-CU----U GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( UU-AAC-GG) -C-UUACC-A A|-GGC-AC- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(CUA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CUUC| UGUC-CU-AG 1021 --GG-GAA-- GA-------- ---------( ----AACAAA ---------) ---------- 1081 ---------- ---------- U-GA-CAUU- A-CCC-U-UG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAA-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GC-AU- 1261 C-UU-AAG|C GCA---GGGU U-UAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -CGCC-UUGC G-AAC-UGGG G-UGCUU-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GG-UC---- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- -------GAC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-AGUCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU--AAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-U G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---UCUUG-- -AC----AGA 1981 -UCC-U--(- UAAU-)-CGG -A-UUCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|U 2701 GGCA-CU-C- U-AGC-GA-G A-CU-G-CCG --AG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCGAA-A CACC--AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -AAA-G-UCG 3121 G-U-U-A--- ---------- ---------- ---------- -----(---- AUUAAUC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------U A-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUG- GUAA-CAAGG UA-CC-GUAG G(AUC-C)CU G......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.W14712 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. W 1471. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. W 1471. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13039|g551085 isolate_name= W 1471; clone 1471-3 NB: duplicates Eub.W1471? BASE COUNT 385 a 316 c 431 g 309 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG UAAA------ ---------- ---------- ---------- 181 ---------- ---------G AAAUGAA-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AGAUU UUC------- ---------- ---------- ---------- 301 ---------- ---------- -------AUU AUGGAA---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCUG---U -ACAG-G-GG 421 -GAU-AG-CU A--------- ------CC-- C(-GAAA-)A -GGUG-A--U UAAUACC-CC 481 AUGAUGCA-- ---------- -------A-C AA-G--A-GA ---UAC-(-- --------AC 541 AU-------- -)-GUA---U CA-CU----U GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUA---- 661 ----UGGG-- AUG---G-|G CCUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( UU-AAC-GG) -C-UUACC-A A|-GGC-AC- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(CUA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CUUC| UGUC-CU-AG 1021 --GG-GAA-- GA-------- ---------( ----AACAAA ---------) ---------- 1081 ---------- ---------- U-GA-CAUU- A-CCC-U-UG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAA-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GC-AU- 1261 C-UU-AAG|C GCA---GGGU U-UAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UU-- 1321 -CGCC-UUGC G-AAC-UGGG G-UGCUU-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-CGG -GG-UC---- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- -------GAC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-AGUCU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU--AAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-U G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------C ---UCUUG-- -AC----AGA 1981 -UCC-U--(- UAAU-)-CGG -A-UUCU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|U 2701 GGCA-CU-C- U-AGC-GA-G A-CU-G-CCG --AG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCGAA-A CACC--AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -AAA-G-UCG 3121 G-U-U-A--- ---------- ---------- ---------- -----(---- AUUAAUC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------U A-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.timidm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium timidum.. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium timidum. ORGANISM Eubacterium timidum. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36296|g530378 BASE COUNT 395 a 337 c 448 g 318 t 2878 others ORIGIN 1 .......... .......... ........CU GCUGCAGAGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG CUUG------ ---------- ---------- ---------- 181 ---------- ---------G AAAUGAC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-UGAAU UUC------- ---------- ---------- ---------- 301 ---------- ---------- -------CAA GCGGAC---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCCU---G UACAG-A-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAAACC-UC 481 AU-GAC---- ---------- -------A-C CG-U--A-GU ---AGC-(-- --------AC 541 AU-------- -)-GCU---A CA-UC----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCUCC----- -GU|----CU G--AUUA-A- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGU-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GUA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CUUC| UGUU-CU-AA 1021 --GG-GAA-- GA-------- ---------( ----AAGAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--CAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UA- 1261 C-CU-AAG|C GCA---AGGU U-UAA-AU-U AG-AGG-C(- UC-A)A-CCU -CU-A-CA-- 1321 -UGCC-UUGC G-AAC-UGGG C-UACUU-GA GUG-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -GU-CC---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AU-A-AGUGU C|C|G-CCU- --GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU--AAACUC --AA-GGAAU UG-ACGGG-C -A-C-CC--G 1861 C-A--CA-AG CAGGGG-AGC U-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---UGCUG-- -AC----AGA 1981 -ACC-U--(- UAAU-)-CGG -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --AG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCGAA-A CACC--AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -AAA-G-UCG 3121 G-U-U-A--- ---------- ---------- ---------- -----(---- AUUAAUC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------U A-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UACCC-GUAG G(AUC-C)CU G......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.timid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium timidum.. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium timidum. ORGANISM Eubacterium timidum. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13042|g551088 BASE COUNT 379 a 322 c 429 g 304 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----AGAAG CUUG------ ---------- ---------- ---------- 181 ---------- ---------G AAAUGAC-GC (--UU----- ---------- ---------- 241 --------CG -)GU-UGAAU UUC------- ---------- ---------- ---------- 301 ---------- ---------- -------CAA GCGGAC---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- CAA--CCU-G C-CCCU---G UACAG-A-GG 421 -GAU-AG-CC A--------- ------UU-- G(-GAAA-)C -GAUG-A--U UAAAACC-UC 481 AU-GAC---- ---------- -------A-C CG-U--A-GU ---AGC-(-- --------AC 541 AU-------- -)-GCU---A CA-UC----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AGGG-- AUG---G-|G CCUCC----- -GU|----CU G--AUUA-A- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGU-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU G-CACAAU-- GG-GC-(GUA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CUUC| UGUU-CU-AA 1021 --GG-GAA-- GA-------- ---------( ----AAGAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--CAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GCG-UAG-GU -G|-GU-UA- 1261 C-CU-AAG|C GCA---AGGU U-UAA-AU-U AG-AGG-C(- UC-A)A-CCU -CU-A-CA-- 1321 -UGCC-UUGC G-AAC-UGGG C-UACUU-GA GUG-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -GU-CC---- ---------- 1681 -(-GU-UA)- ---------- ---------- ---------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AU-A-AGUGU C|C|G-CCU- --GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU--AAACUC --AA-GGAAU UG-ACGGG-C -A-C-CC--G 1861 C-A--CA-AG CAGGGG-AGC U-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---UGCUG-- -AC----AGA 1981 -ACC-U--(- UAAU-)-CGG -U-UUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCG --AG(-GU-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-UAC-U(G 2881 -CGA)AGUG- ---------- GA-GCGAA-A CACC--AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GU-GCCC -AAA-G-UCG 3121 G-U-U-A--- ---------- ---------- ---------- -----(---- AUUAAUC--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------U A-UC-GC-CU A-AGGC-AAA ACC-AA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.5-C.L 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.5 C.LITUSEBURENSE_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.5 C.LITUSEBURENSE_GROUP. ORGANISM 2.16.5 C.LITUSEBURENSE_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.formacet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium formicoaceticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium formicoaceticum. ORGANISM Clostridium formicoaceticum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77836|g572640 BASE COUNT 393 a 337 c 481 g 303 t 2862 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G -)U-CCU|-G 61 GCUCAG--GU -GAACGGC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----C CG---AUUUA UCGGAAG--- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)-G------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGGAAG AUGAUG---- AGG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GAUU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------G-C UA-U--U-UU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A GA-AU----A GC--CAAA-- ---AG----- ---------- 601 --(------- ---AUUUA-- ---)------ ---------| -----U--UG G--UCA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GU|C---CU G-UAUUA-G- CUA-G---UU 721 GG-NG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGACUGUAGC CGACCUC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-A-UAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-UC-GA 1021 --GG-GAA-- GA-------- ---------( -----AAAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-GG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG--- --|-GC-CA- 1261 A-UA-AAG|U CUA---GGGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCC-UUGG A-AAC-UUAU U-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-ACG A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---UUAUG-- -AC----CGC 1981 -UUU-U--(- UAAC-)-AGA -A-GCUUU-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AC---| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UC ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-G UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAAG GGC-A-G-C- GA-AGG-A(G 2881 -UAA)UCUG- ---------- GA-GCGAA-U CUCAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGUGGGC- (UGAAAC-U- C)-GCCCACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-GC-GCCC -GAA-G-CCA 3121 G-CUA-CUUU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CU-GU-CG A-AGGU-GAA GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.felsineu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium felsineum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium felsineum. ORGANISM Clostridium felsineum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77851|g572643 (bases 10 to 1501) BASE COUNT 389 a 332 c 475 g 296 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----C CG---AUUUA UCGGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA GAUGAU--G- AGG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUUG---U -ACAG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GAUU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------G-C UA-U--U-UU ---AAG-(-- --------GC 541 AU-------- -)-CUU---A GA-AU----A GC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCGC| UGUU-UC-GA 1021 --GG-GAA-- GA-------- ---------( -----AAAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-GG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU--GGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CA- 1261 A-UA-AAG|U CUA---GGGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AUGC-CUUG GAAAC-UUAU U-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---UUAUG-- -AC----CGC 1981 -UUU-U--(- UAAC-)-AGA -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---U(---UC ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAAG GGC-A-G-C- GA-AGG-A(G 2881 -UAA)UCUG- ---------- GA-GCGAA-U CUCAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGUGGGC- (UGAAAC-U- C)-GCCCACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-GC-GCCC -GAA-G-CC- 3121 A-GUCAC-UU -UAACC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAG--A-G A-GC-GU-CG A-AGGU-GAA GCC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sticklan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sticklandii str. HF ATCC 12662 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium sticklandii str. HF ATCC 12662 (T). ORGANISM Clostridium sticklandii. REFERENCE 1 AUTHORS Zhao,H., Yang,D., Woese,C.R. and Bryant,M.P. TITLE Assignment of Clostridium bryantii to Syntrophospora bryantii gen. nov., comb. nov. based on 16S rRNA sequence analysis of its crotonate-grown pure culture JOURNAL Int. J. Syst. Bacteriol. 40, 40-44 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 12662 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M26494 ATCC 12662 (T) = VPI 1940 isolate_name= HF BASE COUNT 391 a 326 c 440 g 308 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAUAUUUG AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 GG-AG-A--U AU-------- ---------- ---------- ---------- ---------- 181 ---------- ------AAAA AGGAAG--CC (--UU----- ---------- ---------- 241 --------NG -)GG-GNNNC AUUUUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- AUG|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GCGU---AAC -AC-GUGGG- UAA--CCU-G C-CCCU---A -UCAC-U-GG 421 -GAU-AA-CA C--------- ------AC-- U(-GAAA-)A -GUGU-G--C UAAUACC-AG 481 AU-AAC---- ---------- -------A-U AA-G--C-UU ---UUG-(-- --------GC 541 AU-------- -)-CAU---U AG-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GAU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UC-AAG|U CAG---GGGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UG-- 1321 -AGCC-UCUG A-AAC-UGGU G-AACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -CU------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------G -GUCGG-UGC 1741 CN--GC---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CUUUG-- CAA----ACG 1981 --CC---U(- UAACC)--GG -G-CACC--- UC-------- -UUCG----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- CGAA------ ----GA--C| AAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---U(---UA ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CU-G-CCG --AG(-GA-C AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GU -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -AC-A-GUC- UAAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-ACCC -AAA-G-UUA 3121 G-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-G G-CU-AC-CU A-AGGU-GAA UUC-AA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.stickla2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sticklandii str. SR VPI 14603. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sticklandii str. SR VPI 14603. ORGANISM Clostridium sticklandii. REFERENCE 1 AUTHORS Paster,B.J., Russell,J.B., Yang,C.M., Chow,J.M., Woese,C.R. and Tanner,R.S. TITLE Phylogeny of ammonia-producing ruminal bacteria, Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov JOURNAL Int. J. Syst. Bacteriol. 43, 107-110 (1992) STANDARD No information COMMENTS Organism information Culture collection: VPI 14603 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04167|g174116 isolate_name= SR BASE COUNT 354 a 318 c 431 g 297 t 2976 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-NN--N ACAC-AUGCA A-GUC-GA.. 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... ....AA---- AUG|-CN--- AGCG-GCGG- 361 -A-CG-GG-U GCGU---NAC -AC-GUGGG- UAA--CCU-G C-CCCU---A -UCAC-U-GG 421 -GAU-AA-CA C--------- ------AC-- U(-GAAA-)A -GUGU-G--C UAAUACC-AG 481 AU-AAC---- ---------- -------A-U AA-G--C-UU ---UUG-(-- --------GC 541 NU-------- -)-CAU---U AG-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--GAU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUNUU G-CACNAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UNA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUN -CU-GGGC|G UNAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-UC-AAG|U CAG---GGGU G-AAA-GG-C UA-CGG-C(- UN-N)A-CCG -UA-G-UG-- 1321 -AGCC-UCUG A-AAC-UGGU G-AACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -CU------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------G -GUCGG-UGC 1741 CG--GC---- --GU-(UNA- ---C)N-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -NAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CUUUG-- CAA----AGY 1981 --CC---U(- UAACC)--GG -R-CUCC--- UY-------- -UUS------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- S-AA------ ----RA--C| AAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-CU-N |-UU--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---U(---UA ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-AA-G A-CU-G-CCG --AG(-GA-C NA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-NCA-CA-C GUG--CUACA AUGGC-U-GU -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAA -AC-A-GUC- UNAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -NGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-ACCC -AAA-G-UUA 3121 G-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-G G-CU-AC-CU A-AGGU-GAA UUC-AA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Flf.villos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Filifactor villosus. ACCESSION No information KEYWORDS No information. SOURCE Filifactor villosus. ORGANISM Filifactor villosus. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73452|g437771 (bases 8 to 1514) Former RDP Sids: C.villosum ATCC 33388 = NCTC 11220 = DSM 1645 (T) NB: former name Clostridium villosum BASE COUNT 422 a 297 c 436 g 307 t 2914 others ORIGIN 1 .......... .......... .......... .......... GAGAUU(U-G A)U-CCU|-G 61 GCU....... .......... .......... .......... ....-..... .......... 121 .......... .....AAUUA UAUCGGA--- ---------- ---------- ---------- 181 ---------- ---------- -----GN-UC (--UU----- ---------- ---------- 241 --------CG -)GG-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- AAAGAGAUAA UAAGCU---- ---|------ AGUG-GCGG- 361 -A-CG-GG-U GCGU---AAC -GU-GUGGG- UAA--UCU-G C-CUUU---G -UCAU-A-GG 421 -AAU-AA-CU G--------- ------CU-- U(-GAAA-)A -AGUA-G--C UAAUACC-AA 481 AU-AAC---- ---------- -------A-U AU-C--G-UA ---UAG-(-- --------GC 541 AU-------- -)-CUA---U AA-GA----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---GAAA--- ---)------ ---------| -----U--C- G--GAC---- 661 ----AAAG-- AUG---A-|G CCCGC----- -AU|----CU G--AUUA-G- CUG-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CU-CC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AA A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUAA -CU-GGGC|G UAAA-GGGU- GCG-CAG-GU -G|-GU-CU- 1261 G-UC-AAG|U UAG---UGGU G-AAA-GG-C AU-AGG-C(- UC-A)A-CCA -AU-G-UA-- 1321 -AGCC-AUUA A-AAC-UGAC G-GACUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -G-------- ---------- 1681 -(AGG-AA)U ---------- ---------- ---------- ---------- -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CGAUG-- -CC----GAU 1981 -UCG---G(- UAAUG)--CG -A-AUUU--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AUU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AAU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---AU ---AAG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AUU-GA-G A-CA-G-CUA --AG(-GA-C AA)-CUU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-AU -UA--CAGAG GGA-A-G-C- GA-GAU-U(G 2881 -UGA)AAUG- ---------- GA-GCAAA-C CCCAA-AAAG -AU-G-AUC- UAAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -G-------- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UCG- GG-GG-GCCC -AAA-G-UCA 3121 G-UGA-G-CA -AA-CC---- ---------- ---------- -----(---- -GCGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGUG-C-A G-CU-GC-CU A-AGGC-AAA ACG-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.yurii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium yurii subsp. yurii ATCC 43713. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium yurii subsp. yurii ATCC 43713. ORGANISM Eubacterium yurii. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34629|g762795 BASE COUNT 432 a 292 c 441 g 308 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AA----G GU---AUAUA UA-GGAA--- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAA-U AUGUAU---- AAC|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- UAA--UCA-A C-CUGU---G -ACAC-A-CG 421 -GAU-AA-CU G--------- ------AU-- A(-GAAA-)U -GUCA-G--C UAAUACG-AG 481 AU-GAA---- ---------- -------C-U GU-U--U-AA ---AUU-(-- --------GG 541 GA-------- -)-AAU---G GA-AA----C AG--CAAA-- ---GC----- ---------- 601 --(------- ---GAAA--- ---)------ ---------| -----G--C- G--GUC---- 661 ----ACAG-- ACG---A-|G CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A A-GAA--G-G CC(--CU-AG --)GG-UCGU AAA--GCUC| UGUC-GU-AU 1021 --GG-GAA-- GA-------- ---------( ----AGAAAA ---------) ---------- 1081 ---------- ---------- U-GA-CUGU- A-CCA-U-AC A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGNGGUA-A) U-A-C-GUAG |-GGGN-N-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 G-UU-AAG|U CGA---GGUU A-AAA-GG-C AG-UAG-C(- UC-A)A-CUA -CU-G-UUG- 1321 --GGC-CUUG A-AAC-UAAU U-AGCUU-GA GUA-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--AU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GA------- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- ---------U -UUCGG-UGC 1741 CG--GC---- --GC-(AAA- ---C)G-CA- AUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UG|--- ---------G ---GGAUG-- -AA----AAG 1981 -CAA-U-G(- UAAA-)-GUU -G-UAAU--- GA-------- -UACC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGUA------ ----UA--C| AUC-CC-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GAU- 2281 AG--UUGC-C AG-UAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUA|G 2701 G-CA-CU-C- U-AUU-AA-G A-CA-G-UUA --UG(-GA-U AA)-CAU-A- -AAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GU -AA--CAAAG AGA-A-G-C- AA-GGU-C(G 2881 -UAA)GGCG- ---------- GA-GCAAA-C CUGAA-AAAA -GC-A-GUC- CAAGUUCGGA 2941 U-UGUGGGC- (UGAAAC-U- C)-GCCCACA -UGAAGU-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GC-UGA- GG-GU-ACCC -AAA-G-UCA 3121 G-UGA-U-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAG-A-A G-CU-GC-CU A-AGGU-AAA CUU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.litorale 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium litorale. ACCESSION No information KEYWORDS No information. SOURCE Clostridium litorale. ORGANISM Clostridium litorale. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77845|g572653 BASE COUNT 384 a 351 c 471 g 293 t 2877 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 GAACA-AA-G CG---AUGUG AA-------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAU CAUCGC--G- GCG|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-U-GG 421 -GAU-AA-CG C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------G-U GA-A--C-CU ---UUC-(-- --------GC 541 AU-------- -)-GGA---A GG-AU----C AC--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 A-UA-AAG|U CCG---AGGU G-AAA-GG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UA-- 1321 -AGCC-UUGG A-AAC-UUAU C-AGCUU-GA GUA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AA--CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUUG-- -AC----CGC 1981 -UUC---U(- UAACC)--GA -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AN 2761 N-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG GGC-A-G-C- AA-UCU-C(G 2881 -CGA)GAGC- ---------- AA-GCCAA-U CCCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC--GA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-GCCC -GAA-G-UCA 3121 G-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ----GG-A-G G-CU-GC-CG A-AGGU-GAA AUC-AA-UG- ACU-GGGG-- 3301 ----AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG U-CGGC--UG GA........ 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pardoxum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium paradoxum str. JW-YL-7. ACCESSION No information KEYWORDS No information. SOURCE Clostridium paradoxum str. JW-YL-7. ORGANISM Clostridium paradoxum. REFERENCE 1 AUTHORS Li,Y., Mandelco,L. and Wiegel,J. TITLE Isolation and characterization of a moderately thermophilic anaerobic alkaliphile, Clostridium paradoxum sp nov JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L06838 isolate_name= JW-YL-7 BASE COUNT 359 a 333 c 456 g 298 t 2930 others ORIGIN 1 .......... .......... .......... .NUAUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----G -----AAAUA UUA....... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... ........GU AUUUNC---- --C|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-U-UG 421 -GAU-AA-CA C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACA-AG 481 AU-GAU---- ---------- -------A-U CA-A--A-GG ---AAG-(-- --------GC 541 AU-------- -)-CUU---C UU-UU----G AU--CAAA-- ---GY----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-UG 1021 --AG-GAA-- GA-------- ---------( -----AUUC- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCC-UUUG A-AAC-UGUU G-GGNNU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-CUG AG-G------ -------NA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GA-G----- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CU -CUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----AGC 1981 -UCC---U(- UAAUC)--GG -A-GCCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --AG(-GA-U AA)-CNC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-U-G-C- AA-GGU-C(G 2881 -UGA)GGCU- ---------- GA-GCUAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- GG-GC-ACCC -GAA-G-UCA 3121 G-CUA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G G-CU-GC-CG A-AGGU-GAA AUC-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thalcali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermoalcaliphilum str. JW/YL-23-2 DSM 7309 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermoalcaliphilum str. JW/YL-23-2 DSM 7309 (T). ORGANISM Clostridium thermoalcaliphilum. REFERENCE 1 AUTHORS Li,Y., Engle,M., Weiss,N., Mandelco,L. and Wiegel,J. TITLE Clostridium thermoalcaliphilum sp. nov., an anaerobic and thermotolerant facultative alkaliphile JOURNAL Int. J. Syst. Bacteriol. 44, 111-118 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 7309 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11304 Former RDP Sids: C.thalkali isolate_name= JW/YL-23-2 NB: former name Clostridium thermoalkaliphilum BASE COUNT 350 a 331 c 443 g 291 t 2961 others ORIGIN 1 .......... .......... .......... .....UUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GNC-G -UGC-CU--A AC..-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .).....AUU UGCC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-U-UG 421 -GAU-AA-CA C--------- ------AC-- C(-GAAA-)G -GUGU-G--C UAAUACA-AG 481 AU-AAU---- ---------- -------A-U CA-A--A-GG ---AAG-(-- --------GC 541 AU-------- -)-CUU---C UU-UU----G AU--CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-UG 1021 --AG-GAA-- GA-------- ---------( -----AAUUU ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 U-UC-AAG|U CAG---AGGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCC-UUUG A-AAC-UGUU G-GGCNU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------NN- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GA-G----- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CU -CUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-GC-UUG ACA-UC|--- ---------C ---CUUGG-- -AC----AGC 1981 -UCC---U(- UAAUC)--GG -A-GCCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| UAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-CU--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AG(-GA-U AA)-CUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAGAG GGC-A-G-C- GA-AAC-C(G 2881 -UGA)GGUC- ---------- AA-GCCAA-U CCCUU-AAAG -CU-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GNG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- GG-GC-ACCC -GAA-G-UCA 3121 G-CUA-C-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G G-CU-GC-CG A-AGGU-GAA AUC-GA-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.tenue 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium tenue. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium tenue. ORGANISM Eubacterium tenue. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59118 ATCC 25553 = VPI 4157 (T) BASE COUNT 372 a 331 c 446 g 313 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACG-AG 481 AU-GAU---- ---------- -------A-U AU-N--A-AA ---GUU-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 U-UC-AAG|C CAG---AAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-UUUG G-AAC-UGUA A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CAUUG-- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GG-GC-GCCC -GAA-G-CCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G G-CC-GU-CG A-AGGU-GAA ACC-AA-UG- ACN-GGGG.. 3301 .......... GUAA-CAAGG UAUCG-GAAG G(AUC-A)CC UCCUUU--CU .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ghoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium ghoni. ACCESSION No information KEYWORDS No information. SOURCE Clostridium ghoni. ORGANISM Clostridium ghoni. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M .D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73451|g437750 NCIMB 10636 (T) = VPI 4897 = ATCC 25757 NB: Genbank has DSM 10636 BASE COUNT 381 a 342 c 461 g 309 t 2883 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACG-GG 481 AU-AACU--- ---------- -------A-U AU-G--A-AA ---GUU-(-- --------GC 541 AU---A---- -)-AGC---U UU-CA----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 U-UC-AAG|C CAG---AAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-UUUG G-AAC-UGUA G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GC-G- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CACUUG- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---GA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------U|G 2701 G-CA-CU-C- U-AGA-GG-- A-NU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GG-GC-GCCC -GAA-G-CCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G G-CC-GU-CG A-AGGU-GAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGN--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sordelli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sordellii. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sordellii. ORGANISM Clostridium sordellii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59105 ATCC 9714 = NCIMB 10717 (T) = VPI 2013 BASE COUNT 362 a 325 c 447 g 301 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUAUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----NC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACG-GG 481 AU-AAC---- ---------- -------A-U AU-G--A-GA ---GUC-(-- --------GC 541 AU-------- -)-GGC---U UU-UA----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 U-UC-AAG|C CAG---AAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-UUUG G-AAC-UGUA G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GN-N----- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CN -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GG-GC-GCCC -GAA-G-CCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G G-CN-GG-CG A-AGGU-GAA ACC-AA-UG- GNN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAN031 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone PAN031.. ACCESSION No information KEYWORDS No information. SOURCE clone PAN031. ORGANISM clone PAN031. REFERENCE 1 AUTHORS Benlloch,S., Rodriguez-Valera,F. and Martinez-Murcia,A.J. TITLE Bacterial diversity in two coastal lagoons deduced from 16S rDNA PCR amplification and partial sequencing JOURNAL FEMS Microbiol. Ecol. 18, 267-280 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89360 BASE COUNT 59 a 49 c 65 g 38 t 4165 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 ....A-AG-( GU-AAU-UG) -C-UUACC-A A|--GC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CG--C|C-AC -ACUGG-A-A 841 (CU-A-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG GU........ .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.bifermen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium bifermentans. ACCESSION No information KEYWORDS No information. SOURCE Clostridium bifermentans. ORGANISM Clostridium bifermentans. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73437|g437746 NCIMB 10716 (T) = ATCC 638 BASE COUNT 386 a 337 c 456 g 313 t 2884 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G---A----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GA--- -GCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CU A--------- ------AC-- C(-GAAA-)G -GUAU-A--C UAAUACG-GG 481 AU-AAC---- ---------- -------A-U AU-G--A-AA ---GUC-(-- --------GC 541 AU-------- -)-GGC---U UU-UGA---U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|------ G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 U-UU-AAG|U CAG---AAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-UUUC A-AAC-UAGA G-AACUU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AG(-GA-U AA)-CUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- GG-GC-GCCC -GAA-G-CCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G G-CC-GU-CG A-AGGU-GAA ACC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.litusebu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium lituseburense. ACCESSION No information KEYWORDS No information. SOURCE Clostridium lituseburense. ORGANISM Clostridium lituseburense. REFERENCE 1 AUTHORS Tanner,R.S., Miller,L.M. and Yang,D. TITLE Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I JOURNAL Int. J. Syst. Bacteriol. 43, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59107 ATCC 25759 = VPI 2751 (T) BASE COUNT 383 a 335 c 445 g 317 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ UUUUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACG-GG 481 AU-AAC---- ---------- -------A-U AC-U--U-UU ---AUC-(-- --------GC 541 AU-------- -)-GGU---A GA-AG----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NNG-CGUUAU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CAG---AAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-UUUG A-AAC-UAAG A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-U-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -CU-GU-CGG -NN-NG---- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CC -CUCGG-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---UUUUG-- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCA --GN(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGC-A-G-C- CA-AGU-C(G 2881 -UGA)GGCG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- AG-GC-GCCC -GAA-G-CCG 3121 G-AUA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G U-CC-GU-CG A-AGGU-GAA GCC-AA-UA- ACU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.JN18e 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone JN18e.. ACCESSION No information KEYWORDS No information. SOURCE clone JN18e. ORGANISM clone JN18e. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Microbial diversity of the Maqarin site, Jordan JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69283|g1177268 BASE COUNT 98 a 67 c 101 g 77 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGUG-C-- 1201 AAG-CAUUAU CC-GGAGUAA -CU-GGGC|G UAAA-GAGUU GCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U GAA---UGGU G-AAA-UC-U GG-CGG-C(- UC-A)A-CCG -UA-CAGAC- 1321 -UAUU-AUUC A-AAC-UGGC A-AACUC-GA GAA-----UG G-UA-GAGGU AAC-U|GGAA 1381 UU-UCUAGU- GUA-GGA(-G UGAAA)-UCC -GU-AGAU-A UU-AGAAGG- AACA-CCAA- 1441 -U-G-GC(-G UA-G)GCAG- -GUUACUG-- ---------- ---------- ---------G 1501 ACC--AU-CU CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CC- -GG(AUUA-G AUAC)-CCG- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|G -CU-GU-UGG -GG------- UA-------- 1681 -(UCG-AC)C C--------- ---------- ---------- ---------C -CCCAG-UAG 1741 CG--AA---- ---C-(KAA- ---C)G-CG- UUAA-GUAUC C|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.glycolic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium glycolicum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium glycolicum. ORGANISM Clostridium glycolicum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76750|g572644 Former RDP Sids: C.glycolin DSM 1288 (T) = NCIMB 10632 = ATCC 14880 BASE COUNT 379 a 326 c 445 g 311 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--A------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UUC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GAA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAC-AUGG 421 --AU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACA-GG 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---UUC-(-- --------AC 541 AU-------- -)-GUA---U UU-CU----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CAG---GAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-CUUG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)- ---------- ---------- ---------- -------CCC -CUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---UUUU--- -GA----CCG 1981 AUGC---C(- UAAUC)--GC -A-UUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGC-A-G-C- CA-AGU-C(G 2881 -UGA)GGCC- ---------- GA-GCUAA-U CCCUUAAAUG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-UGG- GG-GC-GCCC -GAA-G-CCA 3121 C-UUA-G-CU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAG-C-G A-GU-GU-CG A-AGGU-GAA AUC-AA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.mayombei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium mayombei str. SFC-5 DSM 6539. ACCESSION No information KEYWORDS No information. SOURCE Clostridium mayombei str. SFC-5 DSM 6539. ORGANISM Clostridium mayombei. REFERENCE 1 AUTHORS Kane,M.D., Brauman,A. and Breznak,J.A. TITLE Clostridium mayombeii, sp. nov., an H2/CO2 acetogenic bacterium from the gut of the African soil-feeding termite, Cubitermes speciosus JOURNAL Arch. Microbiol. 156, 99-104 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 6539 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M62421 Former RDP Sids: C.mayobeii isolate_name= SFC-5 BASE COUNT 330 a 289 c 400 g 286 t 3071 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.......UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NNNC-GC-- UGGC-GGC-G -UGC-CU--N ACNC-AUGCN A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---NAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAC-A-UG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUNU-G--C UAAUACA-GG 481 AU-GAU---- ---------- -------A-U AA-G--A-GA ---UUC-(-- --------AC 541 AU-------- -)-MGA---U UU-AU----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-NG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NAA-C-UCC -(UAGG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NNG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CAG---GAGU G-AAA-GG-C UA-CGG-C(- UN-A)A-CCG -UA-G-UAA- 1321 --GCU-CUUG A-AAC-UGGG A-GACUU-GA GUG-----CC G-GA-GAGGN NAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGCA-C UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 -C-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-NNG -GU-U----- ---------- 1681 -(NCC-CC)- ---------- ---------- ---------- --------CC -AUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---UUUU--- -GA----CCG 1981 -CUG-C-C(- UNAU-)---C -G-CAUYU-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AC---| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGC-A-G-C- CA-AGU-C(G 2881 -UGA)GGCC- ---------- GA-GCUAA-U CCCU--UAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUKCA -UGAAGC-UN -GAGU-UNC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUN- AAUGC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.irregulr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium irregularis. ACCESSION No information KEYWORDS No information. SOURCE Clostridium irregularis. ORGANISM Clostridium irregularis. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73447|g437756 ATCC 25756 = DSM 2635 (T) BASE COUNT 384 a 333 c 459 g 313 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--A------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----A---C (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--G--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -ACAC-AUGG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACA-GG 481 AU-AAC---- ---------- -------A-U AG-UU-U-UU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A AA-AA----U AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 U-UC-AAG|U CAG---GAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-CUUG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GC-G- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---UUCU--- -GA----CUC 1981 -UCC---U(- UAAUC)--GG -A-GAUU--- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCA --GG(-G--U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGC-A-G-C- CA-AGU-C(G 2881 -UGA)GGCG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- AG-AC-GCCC -GAA-G-CGG 3121 A-CUA-U-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-A-A G-UC-GU-CG A-AGGU-GGA AUC-AA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.difficil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium difficile str. N6. ACCESSION No information KEYWORDS No information. SOURCE Clostridium difficile str. N6. ORGANISM Clostridium difficile. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73450|g437749 NCTC 11209 (T) = DSM 1296 = ATCC 9689 isolate_name= N6; Clark 90556-M6S; Mc Clung 1780 NB: Genbank entry has DSM 11209 BASE COUNT 385 a 319 c 444 g 314 t 2914 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUAU-G--C UAAUACG-GG 481 AU-AAU---- ---------- -------A-U AU-U--U-GA ---GAG-(-- --------GC 541 AU-------- -)-CUC---U UG-AA----U AU--CAAA-- ---GG----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----C--C- A--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CC-GGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 U-UC-AAG|U CAG---GAGU G-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UA-- 1321 -AGCU-CUUG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAN-A UU-AGGAGG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UCG -GG-GG---- ---------- 1681 -(UUA-CC)C ---------- ---------- ---------- --------CC -NUCGG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----AUC 1981 -UCC---U(- UAAUC)--GG -A-GAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AG -UA--CAGAG GGU-U-G-C- CA-AGC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CU-A-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- AG-AC-GCCC -GAA-G-CCG 3121 A-UUA-U-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-A-A G-UC-GU-CG A-AGGU-GGA AUC-AA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN36 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN36.. ACCESSION No information KEYWORDS No information. SOURCE clone UN36. ORGANISM clone UN36. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63613 BASE COUNT 85 a 51 c 95 g 65 t 4080 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAAUAA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 A-UC-AAG|U CAG---GAGU U-AAA-AG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UC-- 1321 -AGCU-UUUG A-AAC-UGAU G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU....... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.spUN84 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN84.. ACCESSION No information KEYWORDS No information. SOURCE clone UN84. ORGANISM clone UN84. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63636 BASE COUNT 85 a 52 c 97 g 65 t 4077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAAUAA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 A-UC-AAG|U CAG---GAGU U-AAA-AG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UC-- 1321 -AGCU-UUUG A-AAC-UGAU G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.UN109 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone UN109.. ACCESSION No information KEYWORDS No information. SOURCE clone UN109. ORGANISM clone UN109. REFERENCE 1 AUTHORS Ohkuma,M. and Kudo,T. TITLE Phylogenetic diversity of the intestinal bacterial community in the termite Reticulitermes speratus JOURNAL Appl. Environ. Microbiol. 62, 461-468 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D63594 BASE COUNT 85 a 51 c 95 g 67 t 4078 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAAUAA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 A-UC-AAG|U CAG---GAGU U-AAA-AG-C UA-CGG-C(- UU-A)A-CCG -UA-G-UC-- 1321 -AGCU-UUUG A-AAC-UGAU G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GN-UGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-UU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.mangenot 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium mangenotii str. A33N ATCC 25761. ACCESSION No information KEYWORDS No information. SOURCE Clostridium mangenotii str. A33N ATCC 25761. ORGANISM Clostridium mangenotii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25761 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59098 ATCC 25761 = VPI 4622B (T) isolate_name= A33N BASE COUNT 369 a 320 c 421 g 298 t 2968 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUAUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G---A----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|NNG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CCUG---U -ACAC-A-CG 421 -GAU-AA-CA U--------- ------AC-- C(-GAAA-)G -GUUU-A--C UAAUACG-UG 481 AU-GAC---- ---------- -------A-U AU-C--A-GA ---CAG-(-- --------GC 541 AU-------- -)-CUG---U UU-GA----U AU--CAAA-- ---GG----- ---------- 601 --(------- ---UNAG--- ---)------ ---------| -----C--U- G--GUA---- 661 ----CAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACN-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCN -NAA-C-UCN -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCN-GN-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-CU-CA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-G-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGNA-A) U-A-C-GUAG |-GGGG-N-- 1201 NNG-CGUUAU CC-GGAUUUA -CU-GGGC|G NAAA-GGGU- GCG-NAG-GC -G|-GU-CU- 1261 U-UC-AAG|U CAG---AAGU U-AAA-UU-C UA-CGG-C(- UC-A)A-CCG -UA-G-CC-- 1321 -AGCU-UUUG A-AAC-UGGA A-GACNU-GA GUG-----CA G-GA-GAGGA GAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGN- -CNCUCUN-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GN-NG---- ---------- 1681 -(UUA-CC)- ---------- ---------- ---------- -------CCN -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---UGGUG-- -AC----CUC 1981 -UCC---C(- UAAUC)--GG -A-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| ACC-AG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GN(-N--U AA)-CCU-N- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CNUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGN-N-G-C- NA-AAC-C(G 2881 -CAA)GGUC- ---------- AU-GCCAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUGGGC- (UGAAAC-U- C)-GCCCACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-UGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CU -AA-CC---- ---------- ---------- -----(---- -NCUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-A G-UC-GU-CG A-AGGU-GGC AUC-AA-UA- NCU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.anaer4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus anaerobius str. LK16 ATCC 27227. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus anaerobius str. LK16 ATCC 27227. ORGANISM Peptostreptococcus anaerobius. REFERENCE 1 AUTHORS Ng,L., Bigelow,N. and Dillon,J.R. TITLE Intergenic sequences of the 16S and 23S rRNA genes in Peptostreptococcus anaerobius ATCC 27337 rrn operons JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27227 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z28984|g551660 (bases 1 to 565) isolate_name= LK16 BASE COUNT 134 a 133 c 166 g 132 t 3811 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ..A-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-UC-GU-CG A-AGGU-GGC GUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|UAAGG AGAAU..... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.anaer5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus anaerobius str. LK54 ATCC 27337. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus anaerobius str. LK54 ATCC 27337. ORGANISM Peptostreptococcus anaerobius. REFERENCE 1 AUTHORS Ng,L., Bigelow,N. and Dillon,J.R. TITLE Intergenic sequences of the 16S and 23S rRNA genes in Peptostreptococcus anaerobius ATCC 27337 rrn operons JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29060|g551661 (bases 1 to 565) ATCC 27337 = GIFU 7882 = VPI 4330 = NCTC 11460 isolate_name= LK54 isolate_name= KL51 BASE COUNT 134 a 134 c 166 g 131 t 3811 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ..A-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-UC-GU-CG A-AGGU-GGC GUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|UAAGG AGAAU..... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.anaer3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus anaerobius str. LK54 ATCC 27337. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus anaerobius str. LK54 ATCC 27337. ORGANISM Peptostreptococcus anaerobius. REFERENCE 1 AUTHORS Ng,L., Bigelow,N. and Dillon,J.R. TITLE Intergenic sequences of the 16S and 23S rRNA genes in Peptostreptococcus anaerobius ATCC 27337 rrn operons JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z29059|g551662 (bases 1 to 565) ATCC 27337 = GIFU 7882 = VPI 4330 = NCTC 11460 isolate_name= LK54 isolate_name= KL51 BASE COUNT 133 a 135 c 167 g 130 t 3811 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... ..A-GC-UUG ACA-UC|--- ---------C ---CUCGG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-UC-GU-CG A-AGGU-GGC GUC-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|UAAGG AGAAU..... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.sp.C 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus sp. str. C. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus sp. str. C. ORGANISM Peptostreptococcus sp. REFERENCE 1 AUTHORS Paster,B.J., Russell,J.B., Yang,C.M., Chow,J.M., Woese,C.R. and Tanner,R.S. TITLE Phylogeny of ammonia-producing ruminal bacteria, Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 107-110 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04166 isolate_name= C BASE COUNT 374 a 324 c 437 g 316 t 2925 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----U CU---UA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- AGA|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -ACAC-A-UG 421 -GAU-AA-CA U--------- ------AC-- U(-GAAA-)A -GUUU-A--C UAAUACA-UG 481 AU-AAU---- ---------- -------A-U AU-A--U-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A GA-UA----U AU--CAAA-- ---GU----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-UG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GC-AG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 U-UC-AAG|U CGG---UGGU U-AAA-GG-C UA-CGG-C(- UN-A)A-CCG -UA-G-UU-- 1321 -AGCC-UCCG A-AAC-UGGA A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-UUN--- ---------- 1681 -(-CC-C-)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-RAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-UC-GU-CG A-AGGU-GGC GUC-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.anaer2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus anaerobius str. LK54 ATCC 27337. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus anaerobius str. LK54 ATCC 27337. ORGANISM Peptostreptococcus anaerobius. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14150|g454442 (bases 7 to 1366) ATCC 27337 = GIFU 7882 = VPI 4330 = NCTC 11460 isolate_name= LK54 isolate_name= KL51 BASE COUNT 345 a 295 c 394 g 293 t 3049 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----U CU---NAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUNA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NNAA---- AGA|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CNUA---U -ACAC-A-UG 421 -GAU-AA-CA U--------- ------AC-- U(-GAAA-)A -GUUU-A--C UAAUACA-UG 481 AU-AAU---- ---------- -------A-U AU-A--U-NN ---CCG-(-- --------GC 541 AU-------- -)-CGU---A GA-UA----U AU--CAAA-- ---GU----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----N--C- G--GUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-UG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GC-AG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 U-UC-AAG|U CGG---UGGU U-AAA-GG-C UA-CGG-C(- UC-A)A-CCN -UA-G-UU-- 1321 -AGCU-UCCG A-AAC-UGGA A-GACUU-GA GUC-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--NC-AA CUNACA-CUG AG-G------ -------NA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-UUA--- ---------- 1681 -(-CC-C-)- ---------- ---------- ---------- --------NG -CUCGG-UGC 1741 CU--UC---- --AC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 G.......(. ...)...... ........UC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AG- A-U-GU-GGU -UUAAUA-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-N 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GN(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCGAA-U CCCCU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGU-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.anaero 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus anaerobius str. LK54 ATCC 27337. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus anaerobius str. LK54 ATCC 27337. ORGANISM Peptostreptococcus anaerobius. REFERENCE 1 AUTHORS Paster,B.J., Russell,J.B., Yang,C.M., Chow,J.M., Woese,C.R. and Tanner,R.S. TITLE Phylogeny of ammonia-producing ruminal bacteria, Peptostreptococcus anaerobius, Clostridium sticklandii, and Clostridium aminophilum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 43, 107-110 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27337 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04168 ATCC 27337 = GIFU 7882 = VPI 4330 = NCTC 11460 isolate_name= LK54 isolate_name= KL51 BASE COUNT 374 a 324 c 436 g 319 t 2923 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~UUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--CG----U CU---NAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUGA-UG (--CU----- ---------- ---------- 241 --------UG -)CN-UUAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- AGA|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -ACAC-A-UG 421 -GAU-AA-CA U--------- ------AC-- U(-GAAA-)A -GUUU-A--C UAAUACA-UG 481 AU-AAU---- ---------- -------A-U AU-A--U-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A GA-UA----U AU--CAAA-- ---GU----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-UG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GC-AG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-CU- 1261 U-UC-AAG|U CGG---UGGU U-AAA-GG-C UA-CGG-C(- UC-A)A-CCG -UA-G-UU-- 1321 -AGCC-UCCG A-AAC-UGGA A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-UUN--- ---------- 1681 -(-CC-C-)- ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-GC-UUG ACA-UC|--- ---------C ---CUUAG-- -AC----CGG 1981 -UGU---U(- UAAUC)--AC -A-CCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCA --GG(-GA-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-CU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAGAG GGU-U-G-C- CA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-U CCCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- AA-AC-ACCC -GAA-G-CCG 3121 A-UUA-U-CC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-UC-GU-CG A-AGGU-GGC GUC-GA-UA- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.6-C.P 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.6 C.PURINOLYTICUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.6 C.PURINOLYTICUM_GROUP. ORGANISM 2.16.6 C.PURINOLYTICUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.s7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. s7. str. s7. ACCESSION No information KEYWORDS No information. SOURCE str. s7. str. s7. ORGANISM str. s7. REFERENCE 1 AUTHORS Pedersen,K. and Hallbeck,L. TITLE Investigation of the microbial populations in boreholes and drilling equipment used in the SELECT program JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69311|g1181123 isolate_name= s7 BASE COUNT 92 a 63 c 111 g 70 t 4040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGA-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-G-ACA- 1321 -UGCA-UUUG A-AAC-UGAA A-GACUU-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- ---C-(UAA- ---C)G-CA- AUAA-GCACU C|C|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.Aspo4 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone Aspo4.. ACCESSION No information KEYWORDS No information. SOURCE clone Aspo4. ORGANISM clone Aspo4. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X95232|g1166408 BASE COUNT 403 a 319 c 454 g 294 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AC-G AGAU-GG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA--AU CUU|AGA--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -GGAA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAUGCC-UU 481 AU-AAU---- ---------- -------A-U AA-A--G-AA ---GUC-(-- --------GC 541 AU-------- -)-GGC---U UU-UU----A UU--AAAC-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-AU-UG 1021 --GG-GAA-- GA-------- ---------( ----AAAAAA ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCC-A-AG A-AG--AAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-AC- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-G-ACA- 1321 -UGCA-UUUG A-AAC-UGAA A-GACUU-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -CC----AAU 1981 -CUG-A--(- GAGA-)-UCA -G-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UG--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-CA-G A-CU-G-CCG --UG(-GA-U AA)-CAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -AA--CAGAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- AA-GCUAA-U CCCUU-AAAA -CA-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCA 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-C-A G-CU-GC-CG A-AGGU-GGG GUC-AG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAG. ......GUAG C(CGU-A)UC GGAAGG.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A1ghqi 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A1ghqi.. ACCESSION No information KEYWORDS No information. SOURCE clone A1ghqi. ORGANISM clone A1ghqi. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91424|g987729 BASE COUNT 92 a 64 c 116 g 71 t 4033 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GGGA-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-G-ACA- 1321 -UGCA-UUUG A-AAC-UGAA A-GACUU-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- ---S-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGG..... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.limos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium limosum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium limosum. ORGANISM Eubacterium limosum. REFERENCE 1 AUTHORS Weizenegger,M., Neumann,M., Stackebrandt,E., Weiss,N. and Ludwig,W. TITLE Eubacterium alactolyticum phylogenetically groups with Eubacterium limosum, Acetobacterium woodii and Clostridium barkeri JOURNAL Syst. Appl. Microbiol. 15, 32-36 (1992) STANDARD No information COMMENTS DSM 20543 (T) = NCIMB 9763 = ATCC 8486 NB: data hand entered from paper BASE COUNT 380 a 313 c 456 g 287 t 2940 others ORIGIN 1 .......... .......... .......AUC CUUUUUAUUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-N -UGC-NN--N ACNC-NUGCN A-GUC-GAAC 121 G--AG-AA-G GN---NNGAA GG-------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UG----- ---------- ---------- 241 --------GG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAC AUUAGA---- ACU|GGA--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -GGAA-A-GG 421 -AAU-AG-UC U--------- ------NG-- G(-GAAN-)C -UGGG-A--G UAAAGCC-UU 481 AU-AUU---- ---------- -------A-U GG-U--U-UU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A AG-AU----G AU--GAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AA-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GN-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAG--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUA-AU-UG 1021 --GG-GAA-- GA-------- ---------( -----AGAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AG--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 AAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-A-AAG- 1321 -UGCA-UUGG A-AAC-UGGU A-GACUU-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----GAG 1981 -CCU-A--(- GAGA-)-UAG -G-AANN--- NU-------- ---CC----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C N-)------- GG-------- ----AA---| CAN-AG-AGA |---C|N--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN NA-------- CGAG-C--GN NACCC-CU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UA(-GA-C AA)-UAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -AA--NAGAG GGN-N-G-C- GA-AGC-C(G 2881 -CNA)GGUG- ---------- AA-GCAAA-N CCCUU-AAAN -NA-G-AUC- CCAGUNCGNA 2941 U-UGNAGNC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAGU-UNC- -UAGUA-AUC 3001 GC-GGA-(NN -AGA-AU)-G CCG-CGGUN- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 NCNCCGCCC- GUC-NCA--- --CCN-CGAG A--GU-UGG- UA-AC-ACCC -NGA-G-CCU 3121 G-UGA-G-AG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CA-GU-CG A-AGGU-GGG GCU-G..... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.limosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium limosum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium limosum. ORGANISM Eubacterium limosum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59120 ATCC 8486 = NCIMB 9763 = DSM 20543 (T) BASE COUNT 399 a 327 c 468 g 306 t 2876 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-G GU---UUUGA UGG------- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAC AUUAGA---- ACU|GGA--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CCUA---U -GGAA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAAGCC-UU 481 AU-AUU---- ---------- -------A-U GG-U--U-UU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A AG-AU----C AU--GAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-AU-UG 1021 --GG-GAA-- GA-------- ---------( -----AGAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AG--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 NAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-N-AAG- 1321 -UGCA-UUGG A-AAC-UGGU A-GACUU-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--AA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----GAG 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --UA(-GA-C AA)-UAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -AA--CAGAG GGC-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-U CCCUU-AAAA -CA-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GNG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-CCU 3121 G-UGA-G-AG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CA-GU-CG A-AGGU-GGG GCU-AG-UA- AUU-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.barke2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium barkeri.. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium barkeri. ORGANISM Eubacterium barkeri. REFERENCE 1 AUTHORS Weizenegger,M., Neumann,M., Stackebrandt,E., Weiss,N. and Ludwig,W. TITLE Eubacterium alactolyticum phylogenetically groups with Eubacterium limosum, Acetobacterium woodii and Clostridium barkeri JOURNAL Syst. Appl. Microbiol. 15, 32-36 (1992) STANDARD No information COMMENTS NB: data hand entered from paper BASE COUNT 409 a 329 c 462 g 304 t 2872 others ORIGIN 1 .......... .......... .......... ..UUUAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-G CU---UUUUA UGGA------ ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA AAUAAG---- AGU|GGA--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -GGAA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAAGCC-UU 481 AU-AUU---- ---------- -------A-U UA-A--G-AC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G UU-UU----A AU--GAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UUUU-AU-UG 1021 --GG-GAA-- GA-------- ---------( -----AGAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GN-N-ACG- 1321 -UGCA-UUUG A-AAC-UGUA A-GACUU-GA GUA-----CU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUCAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAU 1981 -CCU-A--(- GAGA-)-UAG -G-AGAU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --UA(-GA-C AA)-UAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-UG -GG-ACAAAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAA -CA-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CU-GU-CG A-AGGU-GGG GUC-AG-UA- AUU-GGGG-N 3301 G---NNNNN- GUAA-CAAGN NNNNN-GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.barker 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium barkeri. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium barkeri. ORGANISM Eubacterium barkeri. REFERENCE 1 AUTHORS Tanner,R.S., Miller,L.M. and Yang,D. TITLE Clostridium ljungdahlii sp. nov., an acetogenic species in clostridial rRNA homology group I JOURNAL Int. J. Syst. Bacteriol. 43, 232-236 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23927 Former RDP Sids: C.barkeri ATCC 25849 (T) = VKM B-1775 = NCIMB 10623 = DSM 1223 = VPI 5359 NB: former name Clostridium barkeri BASE COUNT 409 a 329 c 462 g 304 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-G CU---UUUUA UGGA------ ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GA AAUAAG---- AGU|GGA--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUCA---U -GGAA-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--G UAAAGCC-UU 481 AU-AUU---- ---------- -------A-U UA-A--G-AC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G UU-UU----A AU--GAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AA-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UUUU-AU-UG 1021 --GG-GAA-- GA-------- ---------( -----AGAAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AA--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GN-N-ACG- 1321 -UGCA-UUUG A-AAC-UGUA A-GACUU-GA GUA-----CU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUCAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAU 1981 -CCU-A--(- GAGA-)-UAG -G-AGAU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --UA(-GA-C AA)-UAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-UG -GG-ACAAAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAA -CA-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGA-G-CG -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-C-A G-CU-GU-CG A-AGGU-GGG GUC-AG-UA- AUU-GGGG-N 3301 G......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Psb.alacly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pseudoramibacter alactolyticus. ACCESSION No information KEYWORDS No information. SOURCE Pseudoramibacter alactolyticus. ORGANISM Pseudoramibacter alactolyticus. REFERENCE 1 AUTHORS Weizenegger,M., Neumann,M., Stackebrandt,E., Weiss,N. and Ludwig,W. TITLE Eubacterium alactolyticum phylogenetically groups with Eubacterium limosum, Acetobacterium woodii and Clostridium barkeri JOURNAL Syst. Appl. Microbiol. 15, 32-36 (1992) STANDARD No information COMMENTS Former RDP Sids: Eub.alacly DSM 3980 = ATCC 23263 NB: 5' primer seq nnnnnnnnagaguuugauymtggcucag 3' primer seq ggaucaccuccuuucu data hand entered from paper former name Eubacterium alactolyticum BASE COUNT 406 a 333 c 475 g 305 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-YMU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGU-A -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG-AA-G UU---UUUUA UUGA------ ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GAU AUAAGA---- GAC|AGA--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-A C-CUAU---C -GGAG-C-GG 421 -GAU-AG-CC U--------- ------CG-- A(-GAAA-)U -CGGG-A--G UAAAACC-GC 481 AU-AAC---- ---------- -------A-C AG-C--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAC---U UU-GC----U GU--CAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CCG---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAG-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA UACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-AU-UG 1021 --GG-GAA-- GA-------- ---------( -----AGCAG ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AU G-AG--GAAG ---------U 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-UU- 1261 U-AU-AAG|U CAG---AUGU G-AAA-GG-U AC-CGG-C(- UC-A)A-CCG -GU-G-ACG- 1321 -UGCA-UUUG A-AAC-UGUA A-GACUU-GA GUA-----CU G-AA-GAGGC AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GCA--GA-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -C-------- ---------- 1681 -(GAA-UA)A ---------- ---------- ---------- ---------- -GUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---UCUG--- -AG----CGC 1981 -AAU-A--(- GAGA-)-UAU -U-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --UA(-GA-C AA)-UAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -AA--CAAAG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UUCG- ---------- GA-GCGAA-U CUCAU-AAAA -CA-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGA-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGA-G-AC -AA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-A G-CU-GU-CG A-AGGU-GGG AUC-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.tmarin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium thermomarinus.. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium thermomarinus. ORGANISM Eubacterium thermomarinus. REFERENCE 1 AUTHORS Pledger,R.J., Brown,J.W., Hedrick,D.R., Pace,N.R., White,D.C. and Baross,J.A. TITLE Preliminary characterization of a rod-shaped thermophilic, anaerobic eubacterium isolated from a submarine hydrothermal vent environment JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10086 BASE COUNT 345 a 335 c 465 g 263 t 2968 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G-GGU-AG-G UG---CUUUA AUGAA----- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAU UUAAAG---- UAC|UGA--A AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--CCU-G C-CCUA---U -GCAG-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUGGC-CC 481 AU-AAC---- ---------- -------A-C UU-A--U-GG ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CA-UA----A GU--CAAA-- ---GCG---- ---------- 601 --(------- ----UUU--- ---)------ ---------| ----AG--C- G--GCA---- 661 ----UAGG-- AUG---G-|C CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-C 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA -)-GCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AA 1021 --GG-GAA-- GA-------- ---------( -----AAGA- ---------) ---------- 1081 ---------- ---------- U-GU-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GC-CC- 1261 U-GC-AAG|U CAG---GUGU G-AAA-GG-C AU-CGG-C(- UC-A)A-CCG -AU-G-UG-- 1321 -AGCA-CUUG A-AAC-UGUA G-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(GUA-AC)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UC|--- ---------C ---UCCGG-- -AC----GGC 1981 -UCU-G--(- GAGA-)-CAG -G-GCUUU-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGU------- ----AC---| UGG-AG-AGG |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AUG-AG-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-ACC-C(G 2881 -UAA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUGGGC- (UGCAAC-U- C)-GCCCACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- A-UGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACU--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -G-AA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-G.... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acidiuri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium acidiurici. ACCESSION No information KEYWORDS No information. SOURCE Clostridium acidiurici. ORGANISM Clostridium acidiurici. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59084 ATCC 7906 = DSM 604 (T) BASE COUNT 396 a 335 c 463 g 300 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- -----GGAAA GUCGUUACGG AU-------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------U GAAAGAAUGA CUGGAG---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- AAA--CCU-U C-CUUA---U -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-UU 481 AU-AAA---- ---------- -------A-C UC-U--A-GC ---ACC-(-- --------AC 541 AU-------- -)-GGU---G CA-UG----A GU--CAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----UAAG-- AUG---G-|U CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-UG --)GG-UCGU AAA--ACUC| UGUC-CU-AA 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-NAG-GC -G|-GC-CA- 1261 G-AU-AAG|U CAG---GUGU G-AAA-GG-C GU-CGG-C(- UC-A)A-CCG -GC-G-UA-- 1321 -AGCA-CUUG A-AAC-UAUU U-GGCNU-GA GUA-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-UA CUGACG-CUG AG-G------ -------UA- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-AU-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GUCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--N| AGA-GG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-N A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAA-UAAG -CC-G-AUC- ACAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AC-ACCC -GAA-G-CCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-GGG AUC-GA-UG- ANN-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.purinoly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium purinolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium purinolyticum. ORGANISM Clostridium purinolyticum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M60491 ATCC 33906 = DSM 1384 (T) BASE COUNT 385 a 326 c 463 g 297 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- -----AAAGU URUAACGG-- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- GAAGUUAUAA CUGGAY---- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- AAA--CCU-G C-CUUA---U -ACAA-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-CN 481 AU-AAA---- ---------- -------A-C UC-U--A-GU ---AGC-(-- --------GC 541 AU-------- -)-GYU---A CA-UG----A GU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----UAAG-- AUG---G-|U CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-CU-AA 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UNG-GC -G|-GC-NA- 1261 U-GU-AAG|U CAG---GCGU U-AAA-GG-C AU-CGG-C(- UU-A)A-CCG -AU-G-UA-- 1321 -AGCG-UUUG A-AAC-UGUG U-GGNNU-GA GUA-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 ACC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 CN--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG NAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-AC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -ACU-A--(- GAGA-)-UAG -U-CCCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA--C| AGA-GG-CGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-U AA-CA----- --U------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGA-GG-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG GGG-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCCAA-UAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGA- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CG A-AGGU-GGG GUU-GA-UG- ANN-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.angust 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium angustum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium angustum. ORGANISM Eubacterium angustum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34612|g762793 ATCC 43737 = DSM 1989 (T) BASE COUNT 385 a 329 c 453 g 285 t 2924 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- -----AGAAC UCGAAGGAAA ---------- ---------- ---------- 181 ---------- ---------- --------AC (--UU----- ---------- ---------- 241 --------CG -)GU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -CGGAAUUCG AAUGAU---- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- AAA--CCU-G C-CUUG---U -ACAA-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-CU 481 AU-GAA---- ---------- -------A-C CA-C--A-AG ---AAC-(-- --------AC 541 AU-------- -)-GUU---C UA-AU----G GU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUA---- 661 ----CAAG-- AUG---G-|U CCCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AA 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGNGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- UCG-CAG-GU -G|-GN-CC- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-CA-- 1321 -AGCA-CUUG A-AAC-UGAA G-NNCUU-GA GUA-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NUUUCUG-- ---------- ---------- ---------G 1501 ACU--GA-AA CUGACA-CUG AG-G------ -------AA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -ACU-A--(- GAGA-)-UAG -U-GCCUU-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CA--UUU- 2281 AG--UUGC-U A--CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGA-UG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG GGC-A-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-U CCCAA-GAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CNGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GC-CG A-AGGU-GGG AUU-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.hybenzoi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium hydroxybenzoicum str. JW/Z-1 ATCC 51151 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium hydroxybenzoicum str. JW/Z-1 ATCC 51151 (T). ORGANISM Clostridium hydroxybenzoicum. REFERENCE 1 AUTHORS Zhang,X., Mandelco,L. and Wiegel,J. TITLE Clostridium hydroxybenzoicum sp. nov., an amino acid-utilizing, hydroxybenzoate-decarboxylating bacterium isolated from methanogenic freshwater pond sediment JOURNAL Int. J. Syst. Bacteriol. 44, 214-222 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51151 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L11305 ATCC 51151 (T) = DSM 7310 isolate_name= JW/Z-1 BASE COUNT 399 a 310 c 443 g 294 t 2930 others ORIGIN 1 .......... .......... .......... .NAUUAAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUN-CA (--UU----- ---------- ---------- 241 --------UA -)UG-UAG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--UCU-G C-CCUA---U -ACAG-A-GG 421 -AAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAAACC-AC 481 AU-GAA---- ---------- -------G-C UU-U--U-GU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A UA-GA----A GU--CAAA-- ---UUG---- ---------- 601 --(------- ---AAUA--- ---)------ ---------| ----AG--A- G--GUA---- 661 ----UAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-CU-UG 1021 --GU-GAA-- GA-------- ---------( ----AAGAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-A-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GU-UG- 1261 C-AU-AAG|U CAG---AUGU A-AAA-GG-C UA-AGG-C(- UU-A)A-CCA -UA-G-UA-- 1321 -UGCA-UUUG A-AAC-UGUG U-GACUU-GA GUA-----CA G-GA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-U------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU------- ---------- 1681 -(AGC-GA)U ---------- ---------- ---------- ---------A -CUCAG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CCNUG-- -AC----CGG 1981 -UGC-A--(- GAGA-)-UGU -A-CCCU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG--C| AAG-GG-NGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 N-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG GGG-A-G-C- GA-AGG-A(G 2881 -CAA)UUCG- ---------- GA-GCAAA-U CCCAA-UAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AC)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGG- UA-AU-ACCC -GAA-G-UCG 3121 C-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-GC-GC-CG A-AGGU-AGG AUU-AA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tss.praea2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tissierella praeacuta. ACCESSION No information KEYWORDS No information. SOURCE Tissierella praeacuta. ORGANISM Tissierella praeacuta. REFERENCE 1 AUTHORS Farrow,J.A.E., Lawson,P.A., Hippe,H., Gauglitz,U. and Collins,M.D. TITLE Phylogenetic evidence that the gram-negative nonsporulating bacterium tissierella (Bacteroides) praeacuta is a member of the Clostridium subphylum of the gram-positive bacteria and description of Tissierella creatinini sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 436-440 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80833|g1019828 ATCC 25539 (T) = NCTC 11158 = VPI 0563 BASE COUNT 387 a 315 c 447 g 319 t 2908 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGNC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------A AG---UUUUU AAAGAAGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -UGAAACUUU AAUUAU---- CUU|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- AAA--CCU-G C-CUUU---U -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UU 481 AU-GAC---- ---------- -------A-C UU-A--A-AU ---GUC-(-- --------GC 541 AU-------- -)-GAG---A UU-UA----A GU--CAAA-- ---GC----- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-AG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-AA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GA-U CA-CGG-C(- UC-A)A-CCG -UG-G-UA-- 1321 -AGCA-UUUG A-AAC-UGAA A-GGCUU-GA GUU-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CCCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----UA--C| AGG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGC-A-G-C- UA-CUU-A(G 2881 -CGA)UAAG- ---------- AU-GCUAA-U CUCUU-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- GA-AU-ACCC -GAA-G-NCA 3121 N-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -AUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGNGGG-N-A G-CU-GUUCG A-NGGGUAGG GGUCAA-UN- ACU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tss.praeac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Tissierella praeacuta. ACCESSION No information KEYWORDS No information. SOURCE Tissierella praeacuta. ORGANISM Tissierella praeacuta. REFERENCE 1 AUTHORS Farrow,J.A.E., Lawson,P.A., Hippe,H., Gauglitz,U. and Collins,M.D. TITLE Phylogenetic evidence that the gram-negative nonsporulating bacterium tissierella (Bacteroides) praeacuta is a member of the Clostridium subphylum of the gram-positive bacteria and description of Tissierella creatinini sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 436-440 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80832|g1019827 NCTC 11158 = VPI 0563 = ATCC 25539 (T) BASE COUNT 371 a 308 c 427 g 304 t 2966 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------A AG---UUUUU AAAGAAGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -UGAAACUUU AAUUAU---- CUU|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- AAA--CCU-G C-CUUU---U -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UU 481 AU-GAC---- ---------- -------A-C U--------- ---GUC-(-- --------GC 541 AU-------- -)-GAG---A UU-UA----A GU--CAAA-- ---GC----- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-AG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-AA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GA-U CA-CGG-C(- UC-A)A-CCG -UG-G-UA-- 1321 -AGCA-UUUG A-AAC-UGAA A-GGCUU-GA GUU-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CCCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----UA--C| AGG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGC-A-G-C- UA-CUU-A(G 2881 -CGA)UAAG- ---------- AU-GCUAA-U CUCUU-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G.... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.hastifo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium hastiforme. ACCESSION No information KEYWORDS No information. SOURCE Clostridium hastiforme. ORGANISM Clostridium hastiforme. REFERENCE 1 AUTHORS Farrow,J.A.E., Lawson,P.A., Hippe,H., Gauglitz,U. and Collins,M.D. TITLE Phylogenetic evidence that the gram-negative nonsporulating bacterium tissierella (Bacteroides) praeacuta is a member of the Clostridium subphylum of the gram-positive bacteria and description of Tissierella creatinini sp. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 436-440 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80841|g643110 DSM 5675 (T) = NCTC 11832 = ATCC 33268 BASE COUNT 401 a 330 c 463 g 327 t 2855 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------A AG---UUUUU AAAGAAGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -UGAAACUUU AAUUAU---- CUU|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- AAA--CCU-G C-CUUU---U -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UU 481 AU-GAC---- ---------- -------A-C UU-A--A-AU ---GUC-(-- --------GC 541 AU-------- -)-GAG---A UU-UA----A GU--CAAA-- ---GC----- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-AG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-AA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GA-U CA-CGG-C(- UC-A)A-CCG -UG-G-UA-- 1321 -AGCA-UUUG A-AAC-UGAA A-GGCUU-GA GUU-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CCCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----UA--C| AGG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGC-A-G-C- UA-CUU-A(G 2881 -CGA)UAAG- ---------- AU-GCUAA-U CUCUU-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-CCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-AGG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.hastifor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium hastiforme. ACCESSION No information KEYWORDS No information. SOURCE Clostridium hastiforme. ORGANISM Clostridium hastiforme. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77848|g572646 DSM 5675 (T) = NCTC 11832 = ATCC 33268 BASE COUNT 373 a 309 c 435 g 302 t 2957 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .........U UAU|CUU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- AAA--CCU-G C-CUUU---U -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UU 481 AU-GAC---- ---------- -------A-C UU-A--A-AU ---GUC-(-- --------GC 541 AU-------- -)-GAG---A UU-UA----A GU--CAAA-- ---GC----- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| -----G--C- G--GUA---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-AG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-AA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---AUGU G-AAA-GA-U CA-CGG-C(- UC-A)A-CCG -UG-G-UA-- 1321 -AGCA-UUUG A-AAC-UGAA A-GGCUU-GA GUU-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-ANN A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CCCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----UA--C| AGG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-U AA-CAG---- ---------- ---------- ----(---AU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGC-A-G-C- UA-CUU-A(G 2881 -CGA)UAAG- ---------- AU-GCUAA-U CUCUU-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-CCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-AGG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spBNII 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sp. str. BN II. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sp. str. BN II. ORGANISM Clostridium sp. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75909|g572666 (bases 72 to 1440) isolate_name= BN II BASE COUNT 360 a 297 c 424 g 287 t 3008 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ...AA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--U UAAUACC-UU 481 AU-GAU---- ---------- -------A-C UU-U--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---G AA-GA----A GU--UAAA-- ---GC----- ---------- 601 --(------- ---GUAAA-- ---)------ ---------| -----G--C- G--GUG---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-CG- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUC-CU-A- 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- UCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GG-C AU-AGG-C(- UC-A)A-CCU -GU-G-UA-- 1321 -AGCA-CUUG A-AAC-UGAA A-GACUU-GA GUG-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 AAC--UU-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GN-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC--A)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-A -U-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-A-C A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UG|--- ---------C ---CCCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-UCUU--- UA-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----UA--C| AGG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-U AA)-AUC-AG -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGG-A-G-C- UA-CCU-A(G 2881 -CGA)UAGG- ---------- AU-GCAAA-U CUCUA-AAAG -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-CCA 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-AGG GUC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.filament 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium filamentosum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium filamentosum. ORGANISM Clostridium filamentosum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77847|g572642 BASE COUNT 365 a 307 c 425 g 291 t 2988 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------GG (--AUA---- ---------- ---------- 241 ------UAAA -)-C------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUGAG- AAA--UCU-A C-CU-G---C -ACU--A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -UGGG-A--A UAAUACC-CU 481 CU-GAC---- ---------- -------A-C UU-A--C-AU ---UUC-(-- --------AC 541 AU-------- -)-GAA---A -G-UA----A GU--UAAA-- ---GC----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----G--C- C--CUUUU-- 661 ---GCUUG-- AUG---A-|U UACA------ -GU|----CC C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGUC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUC-CU-AG 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 U-GC-AAG|C CAG---AUGU G-AAA-GA-U CA-UGG-C(- UU-A)A-CUG -UG-G-UA-- 1321 -AGCA-UUUG A-AAC-UGUA A-GGCUU-GA GUA-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAN-A UU-AGGAAG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GUC-AU)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)------ NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UN|--- ---------C ---CUCGG-- -AC----CGG 1981 -ACU-A--(- GAGA-)-UAG -UCCUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G-AC| UGA-GGGUGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G .......... |....(.... .)........ 2221 .....(.... ..U)-CCCGC AA-------- CGAG-C--GN AACCC-UU.. |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GA -UA--CAACG GGU-U-G-C- CA-CCU-C(G 2881 -NAA)GAGG- ---------- GA-GCUAA-U CCCAC-AAAG -UC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UGA- CA-AU-ACCC -GAA-G-CCA 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-AGG GCC-AA-UG- ACU-GGGG-U 3301 C---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCCGG.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ultunens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium ultunense.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium ultunense. ORGANISM Clostridium ultunense. REFERENCE 1 AUTHORS Schnurer,A., Schink,B. and Svensson,B.H. TITLE Clostridium ultunense sp. nov., a meophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium JOURNAL Int. J. Syst. Bacteriol. 46, 1145-1152 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69293|g1181135 Former RDP Sids: C.ultunae BASE COUNT 378 a 317 c 446 g 305 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------A AGAA-UUUAU CA-------- ---------- ---------- ---------- 181 ---------- ---------- --UGAAG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGGAA ---------- ---------- ---------- ---------- 301 ---------- ---------- --------UG AUAAAC--UU CUU|------ AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -GC-GUGAG- GAA--CCU-G C-CUUC---C -ACAA-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-CU 481 AU-GAA---- ---------- -------A-C UU-A--G-CA ---AUC-(-- --------GC 541 AU-------- -)-GAU---A UU-UA----A GU--UAAA-- ---GC----- ---------- 601 --(------- ---GUUA--- ---)------ ---------| -----G--C- G--GUG---- 661 ----GAAG-- AUG---G-|C CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( UU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GA-C-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GGA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GU-CA- 1261 A-AU-AAG|U CAG---AUGU G-AAA-GG-C GU-AGG-C(- UU-A)A-CCU -AU-G-UA-- 1321 -AGCA-UUUG A-AAC-UGUU U-GGCUU-GA GUU-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -AGG------ ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCGG-- -GC----CGU 1981 -CUU-A--(- GAGA-)-UAA -G-ACCU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA--C| UGA-GG--GA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AA-CAG---- ---------- ---------- ----(---UU ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|U 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG GGU-A-G-C- GA-CUU-A(G 2881 -UGA)UAAG- ---------- GA-GCCAA-U CCCUU-AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UAG- CA-AU-ACCC -GAA-G-CCA 3121 G-UGA-G-CC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-C-A A-CU-GU-CG A-AGGU-AGG GUU-UA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hlc.kunzii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Helcococcus kunzii. ACCESSION No information KEYWORDS No information. SOURCE Helcococcus kunzii. ORGANISM Helcococcus kunzii. REFERENCE 1 AUTHORS Collins,M.D., Facklam,R.R., Rodrigues,U.M. and Ruoff,K.L. TITLE Phylogenetic analysis of some Aerococcus-like organisms from clinical sources: description of Helcococcus kunzii gen.nov.sp.nov. JOURNAL Int. J. Syst. Bacteriol. 43, 425-429 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X69837 NB: GAUGUAAAU repeated after 193r (in downstream stalk of 183 helix) BASE COUNT 416 a 291 c 428 g 327 t 2914 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUU-GAAC 121 G--------- -----AGAAU UUUUCAGUUG AU-------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------U GAAACCGAAA ANGGAA---- ---|------ AGUA-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G C-CUUU---C -ACAA-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-UU 481 AU-GAU---- ---------- -------A-C AU-U--A-AU ---AUC-(-- --------GC 541 AU-------- -)-GAU---G UA-AA-UG-A UG--UAAA-- ---UG----- ---------- 601 --(------- -UUAAAGAAU U--)------ ---------| -----U--C- G--GUG---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-ACU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-AUU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUC-CU-UA 1021 --GC-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-GCU-A-AG A-AG--CAAG ---------C 1141 -CCUGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ANG-UAG-GC -G|-GU-UA- 1261 A-UU-AAG|U CUG---AAUU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -CG-G-UU-- 1321 -CGGU-UUAG AAAAC-UGGU U-AACUU-GA GUA-----GA U-GA-GGGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUA-- ---------- ---------- ---------G 1501 AAU--CU-AA CUGACG-CUG AG-A------ -------UA- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -UU-GU-UGG -GA------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------U -CUCAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG A-A---|--- ---------- ----GGG--- -A-----NAU 1981 -CCU-A--(- GAGA-)-UAG -G-AUAG--- UC-------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CUU-GU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AG-CGA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UG -AA--CAAAG CGU-A-G-C- UA-CCU-C(G 2881 -UGA)GAGC- ---------- AA-GCGAA-U CGCAU-AAAA -CA-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-CGGAG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-UCG 3121 U-CGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUCAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-AC-GC-CG A-AGGU-UGG GUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.8_29 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PUS8.29. str. PUS8.29. ACCESSION No information KEYWORDS No information. SOURCE str. PUS8.29. str. PUS8.29. ORGANISM str. PUS8.29. REFERENCE 1 AUTHORS Dymock,D., Weightman,A.J., Scully,C. and Wade,W.G. TITLE Molecular analysis of microflora associated with dentoalveolar abscesses JOURNAL J. Clin. Microbiol. 34, 537-542 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43700|g1172144 isolate_name= PUS8.29 BASE COUNT 399 a 288 c 420 g 305 t 2964 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGCUG -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--UG----A UU---UUUAU GGAAA----- ---------- ---------- ---------- 181 ---------- ---------- ----AGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------G GAAAUU--A- AAU|-GA--A AGUG-GCGA- 361 -A-C--GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CUUA---C -ACAG-G-GG 421 --AU-AG-CC G--------- ------UU-- G(-GAAA-)C -GACG-A--U UAAUACC-AC 481 AU-GAG---- ---------- -------A-C AA-C--U-AA ---GAC-(-- --------AC 541 AU-------- -)-GUU---U UG-GA----G GU--AAAA-- ---GA----- ---------- 601 --(------- ----UUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)AA-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CAG---GUGU G-AAA-GC-G UG-AGG-C(- UU-A)A-CCU -CA-U-UA-- 1321 -AGCA-CUUG A-AAC-UGGA A-GGCUU-GA GUG-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-N UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UU-UA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -GA------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------U -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-G---(G CAA)---C-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- --------UA ---GUUG--- -AG----UUA 1981 -UUG-A--(- GAAA-)-UUG -A-UAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAG-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CA-CG AGA-A-G-C- UA-GAC-A(G 2881 -UGA)UGUU- ---------- AA-GCAAA-A CUCUA-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-CCG 3121 C-CGA-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.micros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus micros. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus micros. ORGANISM Peptostreptococcus micros. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14143|g454184 (bases 7 to 1375) BASE COUNT 383 a 270 c 406 g 301 t 3016 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--UG----A UU---UUUGU GGAA------ ---------- ---------- ---------- 181 ---------- ---------- ----AUU-CU (--UU----- ---------- ---------- 241 --------NG -)GG-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------N GAAAUN--G- AAU|-CN--A AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CUUA---C -ACAG-G-GG 421 -GAU-AG-CC G--------- ------UU-- G(-GAAA-)C -GACG-A--U UAAUACC-AC 481 AU-GAG---- ---------- -------A-C CA-C--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GNU---A UA-GG----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AAG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-AA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GGA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)AA-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GA-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-UAA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GU-UU- 1261 U-UC-AAG|U CAG---GUGU U-AAA-GC-G UN-AGG-C(- UU-A)A-CCU -CA-U-UA-- 1321 -AGCA-UUUG A-AAC-UGGA A-GACUU-GA GUN-----AA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--UU-UA CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GA------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------U -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- CUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-G---(G CAA)---C-A CU-GAAACUC -AAA-NGAAU NG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- --------UA ---GUUG--- -AG----UUA 1981 -UUU-A--(- GAAA-)-UUG -A-UAAG--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAA-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-AA-CU-C- U-GGA-GA-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGA-A-G-C- GA-GAU-A(G 2881 -AGA)UGUU- ---------- AA-GCGAA-A CUCUA-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.magnus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus magnus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus magnus. ORGANISM Peptostreptococcus magnus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14149|g454441 (bases 7 to 1365) ATCC 15794 = GIFU 7881 BASE COUNT 381 a 283 c 395 g 282 t 3035 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -CAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 GGGNUU---U AG---UAGAC AGAA------ ---------- ---------- ---------- 181 ---------- ---------- --------GC (--CU----- ---------- ---------- 241 --------CG -)GN------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -------GGA AGAUUA---- CUA|-AUCGG AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- CAA--CCU-G C-CUAU---G -ACAG-U-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------A-U CG-U--A-GA ---AAC-(-- --------AC 541 AU-------- -)-GUU---U CA-AC----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUC---- 661 ----AUAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-NCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-G A-GAA--G-G UC(--UU-CG --)UA-UCGU AAA--GUUC| UGUC-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGG....) .......... |...GG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CGA---AUGU U-AAA-GA-U CG-GGG-C(- UC-A)A-CCC -CG-U-AA-- 1321 -AGCA-UUGG A-AAC-UGAU A-AACUU-GA GUA-----GU G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAGG- AAUA-CCAG- 1441 -U-A-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--CA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUAGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UNNA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- --------UG ---GGUG--- -AA----AGG 1981 -UAU-A--(- GAGA-)-UAU -A-CCCCU-- CU-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- AG-------- ----AG--A| CAU-CC-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--CUU- 2281 AG--UUAC-C AG-CNN---- ---------- ---------- ---N(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-UA-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGAG GGC-A-G-C- UA-UAU-A(G 2881 -UGA)UAUA- ---------- AU-GCAAA-A CUCGA-AA-G -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGA-AU)-G UCA-CGGUG- AAUGC-GUU- CC........ ..GUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.prevo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus prevotii. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus prevotii. ORGANISM Peptostreptococcus prevotii. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14153|g454444 (bases 7 to 1370) GIFU 8124 = JCM 8142 BASE COUNT 371 a 293 c 406 g 280 t 3026 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAAU UNNAACCGA- ---------- ---------- ---------- 181 ---------- ---------- ------U-CU (--CU----- ---------- ---------- 241 --------NN -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --GAGAAGAU AAAUGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- AAA--CCU-G C-CUUU---C -ACAA-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-CU 481 AU-GAC---- ---------- -------A-C AU-U--U-CC ---UUC-(-- --------GC 541 AU-------- -)-GGA---A GA-AA----U NU--UAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUG---- 661 ----AAAG-- AUG---G-|U CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-CA- UGA------- -----UC-AG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)AG-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- UCG-CAG-GC -G|-GU-UU- 1261 A-GC-AAG|U CCG---AUGU U-AAA-GG-C AU-GGG-C(- UC-A)A-CCC -AU-G-UA-- 1321 -AGCA-UUNN A-AAC-UGGU A-GACUU-GA GUU-----AA G-GA-GAGGN AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--UN-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -G-------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------- -CUCGG-UGC 1741 CG--GA---- ---N-(UAA- ---C)N-NA- NUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GUG-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UAG ACA-UU|--- --------UU ---AAUG--- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-CCUU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A---| CAG-UA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AAA-GG-G A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG AGC-A-G-C- GA-GCG-A(G 2881 -CGA)UCUC- ---------- AA-GCGAA-U CUCAA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.indoli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus indolicus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus indolicus. ORGANISM Peptostreptococcus indolicus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14147|g454440 (bases 7 to 1372) ATCC 29427 = GIFU 7848 BASE COUNT 387 a 292 c 394 g 288 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAAU CUUAACAGAA ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---NGAAGAU AAGUGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUA---G -ACAU-U-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-AA 481 AU-NAA---- ---------- -------A-U CA-C--A-UA ---UGC-(-- --------AC 541 AU-------- -)-GCA---U AA-NU----G AU--CAAA-- ---GC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--C- G--GUC---- 661 ----UAAG-- AUG---G-|A CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-A ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GGA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--GUUC| UUUG-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AA G-AA--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- UCG-CAG-GC -G|-GA-AA- 1261 U-GC-AAG|U CAG---GUGU A-AAA-GG-C AG-UAG-C(- UU-A)A-CUA -CU-G-UA-- 1321 -AGCA-UUUN A-AAC-UGCA U-AUCUU-GA GUG-----AA G-UA-GAGGU AAG-U|GGAA 1381 UU-UUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAAAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--CA-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-AU-CGG -A-------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------- -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUG-C---(G CAA)---G-C AU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUA-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- --------CU ---CAGG--- -AC----CGG 1981 -UAU-A--(- GAGA-)-UAU -A-CCCU--- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- CA-------- ----AG---| CCU-CA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CA-G-(UUAA -GU)-CUGGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -AA--CAAAG AGC-GGG-C- AA-GCU-A(G 2881 -CGA)UAGC- ---------- AA-GCGAA-U CUCAA-AAAG -CC-U-AUC- UCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGAACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACC....... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.asacl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus asaccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus asaccharolyticus. ORGANISM Peptostreptococcus asaccharolyticus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14145|g454439 (bases 7 to 1384) NB: NGAAUCAAA removed at pos 884 (redundant) BASE COUNT 389 a 282 c 397 g 292 t 3016 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAGC UUUAACAGAU ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --UGAAGAUA AAGCGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUU---N -ACAU-C-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACN-NN 481 AU-AAA---- ---------- -------A-U CC-U--A-CA ---UAC-(-- --------AC 541 AU-------- -)-GUA---C AU-AG----G UU--CAAA-- ---AC----- ---------- 601 --(------- ---UACG--- ---)------ ---------| -----G--U- G--GUC---- 661 ----UUAG-- AUG---G-|A CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-GA-( GU-AAA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-A ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AN-G-A A-GAA--G-G CC(--UU-CG --)GG-CAGU AAA--GGUC| UUUU-NU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AA G-GA--AAAG ---------C 1141 -ACCGGCU-G CAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- UCG-CAG-GC -G|-GA-AA- 1261 U-GC-AAG|U CAG---AUGU A-AAA-GG-C AG-UAG-C(- UU-A)A-CUA -CU-G-UA-- 1321 -AGCA-UUUN A-AAC-UGUA U-AUCUU-GA GAA-----GU G-UA-GAGGN AAG-U|GGAA 1381 UU-UUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAAAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 GCA--CA-UU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -C-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUG-C---(G CAA)---G-U AU-GAAACUC -AAA.GGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- --------UA ---GAGG--- -AC----AUA 1981 -UUU-A--(- GAGA-)-UAA -A-UAAUU-- CU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CCU-CU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGGG-C--GC AACCC-UU-A |-UA--UCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AGA-UA-G A-CU-G-CCG --AU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-CC -CU--GGGC- 2821 N-ACA-CA-C GUG--CUACA AUGGA-A-GG -UA--CAAAG GGA-A-G-C- CA-AAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CUCAA-AAAG -CC-U-UUC- CCAGUUCGGA 2941 U-UGUUCUC- (UGCAAC-U- C)-GAGUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.lacrim 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus lacrimalis. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus lacrimalis. ORGANISM Peptostreptococcus lacrimalis. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14141|g454182 (bases 7 to 1373) GIFU 7667 = JCM 8139 BASE COUNT 392 a 289 c 400 g 282 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAAU CUUAACAGA- ---------- ---------- ---------- 181 ---------- ---------- -----AC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---GAAGAUA AGACGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUU---N -ACAC-A-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAAACC-UG 481 AU-GAA---- ---------- -------C-U AU-C--A--A ---AUC-(-- --------AC 541 AU-------- -)-GAU---U AG-GA----A GU--UAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--GUA---- 661 ----AAAG-- AUG---G-|A CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AA-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-A ACG)--GUCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AA G-GA--AAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- UCG-CAG-GC -G|-GC-AA- 1261 U-GC-AAG|U CAG---AUGU A-AAA-GG-C AA-AGG-C(- UC-A)A-CCU -UU-G-UA-- 1321 -AGCA-UCUG A-AAC-UGUA U-AGCUU-GA GAA-----GU G-UA-GAGGC AAG-U|GGAA 1381 UU-UUUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AAAAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCA--CA-AU CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -U-------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------- -UCUGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUG-C---(G CAA)---G-C AU-GAAACUC -AAA-NGAAU NG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGNAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- --------UU ---AGAG--- -AC----GAA 1981 -CUU-A--(- GAGA-)-UAA -G-UUUUC-- UU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----AA--G| CCC-UU-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AGA-AA-G A-CU-G-CCG --AU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-AAG-A(G 2881 -UGA)UCUG- ---------- AA-GCGAA-A CUCAC-AAAA -UC-U-GUC- CCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.9succ1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus sp. str. 9succ1. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus sp. str. 9succ1. ORGANISM Peptostreptococcus sp. REFERENCE 1 AUTHORS Janssen,P.H., Liesack,W., Kluge,C., Seeliger,S., Schink,B. and Harfoot,C.G. TITLE Sodium-dependent succinate decarboxylation by a new anaerobic bacterium belonging to the genus Peptostreptococcus JOURNAL Antonie Van Leeuwenhoek 70 (1), 11-20 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90471|g939960 isolate_name= 9succ1 BASE COUNT 398 a 297 c 423 g 285 t 2973 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAAU UUGGCNUGAA ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --AGAUUACU AAAUGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUU---G -ACAU-G-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-CA 481 AU-NAA---- ---------- -------A-C UG-U--A-AG ---AUC-(-- --------GC 541 AU-------- -)-GAU---C AA-UC----A GU--CAAA-- ---AU----- ---------- 601 --(------- --GUCUA--- ---)------ ---------| -----G--U- G--GUC---- 661 ----AAAG-- AUG---G-|A CUCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--GCUC| UGUC-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAG- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- UCG-CAG-GC -G|-GC-AA- 1261 U-GC-AAG|U CAG---GUGU G-AAA-GA-C GG-AGG-C(- UC-A)A-CCU -CC-G-CA-- 1321 -AGCA-UUUG A-AAC-UGCA U-AGCUU-GA GAU-----GU G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--CA-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -A-------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------- -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- --------UA ---GUGG--- -GA----UAU 1981 -UCU-A--(- GAGA-)-UAG -A-AUAGA-- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--A| CUG-CU-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AGA-GG-G A-CU-G-CCG --AU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--UAAAG AGA-A-G-C- AA-GAU-A(G 2881 -UGA)UAUU- ---------- AA-GCAAA-C CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGA-AU)-G CUG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- CA-AU-ACCC -GAA-G-CCG 3121 G-UGA-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.asaclt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus asaccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus asaccharolyticus. ORGANISM Peptostreptococcus asaccharolyticus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14138|g454180 (bases 7 to 1377) ATCC 14963 = GIFU 7656 BASE COUNT 381 a 293 c 404 g 283 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- -----GAAAA UCAAACAGAA C--------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- -CUGAAGUUU GGAAGG---- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUU---G -ACAC-G-GG 421 -GAU-AG-CC A--------- ------CC-- G(-GAAA-)C -GGUG-A--U UAAUACC-CU 481 AU-GAA---- ---------- -------A-U CG-U--A-GU ---GAC-(-- --------AC 541 AU-------- -)-GUC---A UA-AC----G AU--CAAA-- ---GUN---- ---------- 601 --(------- ---AAUU--- ---)------ ---------| ----AG--C- G--GUC---- 661 ----AAAG-- AUG---G-|A CUCGC----- -GU|----CU ---UAAU--- -UA-A---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-A ACG)--GUCC -AAA-C-UCC -(UACG)-GG GAG-GC-AG- C-A---GUUG 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-G A-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--GCUC| UGNN-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- UCG-CAG-AC -G|-GU-UU- 1261 A-GC-AAG|U CAG---AUGU N-AAA-NG-C AA-GGG-C(- UC-A)A-CCC -UU-G-UA-- 1321 -AGCA-UUUN A-AAC-UAAU A-AACUU-GA GUA-----GU G-AA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 UCA--CA-AA CUGACG-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-CGG -A-------- ---------- 1681 -(-NA-AU)- ---------- ---------- ---------- ---------- -UUCGG-UGC 1741 CG--NA---- --NU-(UAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GUG-C---(G CAA)---G-C UU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- --------AU ---AUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-UA-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-AA-CU-C- U-AAA-GG-G A-CU-G-CCG --AU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-GG -UA--CAAAG AGC-G-G-C- GA-GCU-A(G 2881 -UGA)UAGU- ---------- AA-GCGAA-U CUCAA-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGUUCGC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GGU- CCC-GGU-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.tetrad 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus tetradius. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus tetradius. ORGANISM Peptostreptococcus tetradius. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14142|g454183 (bases 7 to 1377) BASE COUNT 380 a 282 c 396 g 305 t 3013 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GUAUU UAGUAGACNN AA-------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UC----- ---------- ---------- 241 --------GG -)UG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -ANGAUUACU AAUGGA---- ---|-----G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CUAU---G -ACAG-U-GG 421 -GAU-AG-CC U--------- ------CG-- G(-GAAA-)C -CGGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------A-U CG-U--A-UC ---UNC-(-- --------GC 541 AU-------- -)-GUU---G AA-AU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GG 961 U-G-AN-N-A U-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--AAUC| UUUU-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGAUA-A) U-A-C-GUGG |-GGCC-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GA-UA- 1261 A-GC-AAG|U UAG---AAGU C-AAA-UC-C UA-UAG-C(- UC-A)A-CUA -UA-G-UA-- 1321 -AGCU-UUUA A-AAC-UGCU C-AUCUU-GA GGU-----AU G-GA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCA--UA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-GU-CUG -GA------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------U -CUGGG-GUC 1741 CU--NC---- --AG-(UAA- ---C)G-CA- AUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------UU ---ACGG--- -AG----GGA 1981 -AUU-A--(- GAGA-)-UAG -U-UCCUU-- AC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAA------- ----GA---| CUG-UA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UA--UUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-UU-U A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CACAG GGA-A-G-C- GA-GAC-U(G 2881 -CGA)AGUU- ---------- AA-GCAAA-A CUCAA-AAAG -CC-U-GUC- CCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UCGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.laclyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus lactolyticus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus lactolyticus. ORGANISM Peptostreptococcus lactolyticus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14154|g454445 (bases 7 to 1375) GIFU 8586 = JCM 8140 BASE COUNT 376 a 284 c 387 g 307 t 3022 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAAAC UUAAAUNAC- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUUUN AAGUGG---- ---|-AU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUA---G -AGAA-G-GG 421 -GAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--A UAAUACC-CU 481 AU-AAC---- ---------- -------A-C CA-A--C-AC ---CUC-(-- --------GC 541 AU-------- -)-GAA---G AG-UU----G GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----UAAG-- AUG---G-|A CUUGC----- -GU|----CU G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-UU-U-A --GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AAUC| UUUU-CU-AU 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCA-U-AG G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCG.....) .......... |.GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GG-UA- 1261 A-GC-AAG|U UAG---AAGU G-AAA-UC-C UG-UAG-C(- UC-A)A-CUA -CA-G-UA-- 1321 -AGCU-UUUA A-AAC-UGCU C-AUCUU-GA GAU-----AU G-GA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCA--UA-AU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-GU-CUG -GA------- ---------- 1681 -(GUA-AA)- ---------- ---------- ---------- ---------U -CUGGG-UGC 1741 CU--UC---- --AC-(UAA- ---C)G-CA- UUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 AUN-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)---GAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------UU ---ACGG--- -NG----GGA 1981 -GCU-A--(- GAGA-)-UAG -U-UCCUU-- AC-------- --UUC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GAC------- ----GA---| CUG-UA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAC-AA-U A-CU-G-CCG --AU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CACAG AGC-A-G-C- UA-AAC-A(G 2881 -CGA)UGUC- ---------- AC-GCGAA-U CUCAA-AAAG -CC-U-GUC- CCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.prevot 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus prevotii. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus prevotii. ORGANISM Peptostreptococcus prevotii. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14139|g454446 (bases 7 to 1375) ATCC 9321 = GIFU 7658 BASE COUNT 377 a 283 c 397 g 304 t 3015 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-G -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAAGC UUAAAUGAU- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGACCUA AAGUGG---- ---|-AU--U AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUG---C -ACAA-G-GG 421 -GAU-AG-CC G--------- ------UU-- G(-GAAA-)C -GACG-A--A UAAUACC-CU 481 AU-GAU---- ---------- -------A-U GA-U--A-GU ---CUC-(-- --------GC 541 AU-------- -)-GGN---G UU-AU----C AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-AG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-UU---U A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AAUC| UUUC-GU-AU 1021 --GG-GAA-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCA-U-AC G-AA--UAAG ---------G 1141 -ACCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GA-UA- 1261 A-GC-AAG|U UAG---AAGU U-AAA-UC-C UA-UAG-C(- UC-A)A-CUA -UA-G-UA-- 1321 -AGCU-UUUA A-AAC-UGCU C-AUCUU-GA GGU-----AU G-GA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCA--UA-AA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-GU-CUG -GA------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------U -CUGGG-UGC 1741 CG--UC---- --AC-(UAA- ---C)G-CA- AUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------UU ---ACGG--- -CG----GGG 1981 -UCU-A--(- GAGA-)-UAG -A-CUCUUA- CN-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ---GGA---| CUG-UA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-AA-U A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG GGN-A-G-C- UA-CCN-A(G 2881 -CGA)UAGG- ---------- AA-GCNAA-U CUNAA-AAAG -CC-U-GUC- GUAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.hygenl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus hydrogenalis. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus hydrogenalis. ORGANISM Peptostreptococcus hydrogenalis. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14140|g454181 (bases 7 to 1375) BASE COUNT 387 a 275 c 388 g 310 t 3016 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-G -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAAAC UUAGAUGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGACCUU AAGUGG---- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUA---C -ACAA-G-GG 421 -GAU-AG-CC U--------- ------CU-- G(-GAAA-)C -GGAG-A--A UAAUACC-CU 481 AU-AAA---- ---------- -------G-U CU-A--A-UC ---AGC-(-- --------CC 541 AU-------- -)-GCU---G GA-AA----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-UU---U A-GAA--G-G NC(--UU-CG --)GG-UUGU AAA--AAUC| UUUU-UU-AC 1021 --GG-GAU-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGNNN-N) N-N-C--UAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GA-UA- 1261 A-GC-AAG|U UAG---AAGU G-AAA-UC-C UA-UAG-C(- UC-A)A-CUA -UA-G-UA-- 1321 -AGCU-UUUA A-AAC-UGCU C-AUCUU-GA GGU-----AU G-GA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAGG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCA--UC-AU CUGACG-CUU AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-GU-UUG -GA------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------U -CUGGG-AGC 1741 CU--GC---- --AC-(UAA- ---C)G-CA- UUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAAGUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUUACG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------UU ---UCGG--- -AG----GGA 1981 -AUU-A--(- GAGA-)-UAU -U-UCCUU-- AC-------- --GAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUC------- ----GA---| CUG-AA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---NA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-U A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-AAG-A(G 2881 -UGA)UCUG- ---------- AA-GCGAA-A CUCAC-AAAA -UC-U-GUC- CCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.asacl3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus asaccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus asaccharolyticus. ORGANISM Peptostreptococcus asaccharolyticus. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14152|g454443 (bases 7 to 1369) BASE COUNT 387 a 269 c 383 g 315 t 3022 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-G -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAAAC UUAGAUGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGANUUU AAGUGG---- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUA---C -ACAA-G-GG 421 -GAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--A UAAUACC-CU 481 AU-AAC---- ---------- -------G-U CA-A--U-UU ---CUC-(-- --------GC 541 AU-------- -)-GAU---A GA-GU----N AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-UU-U-A --GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AAUC| UUUU-UU-AC 1021 --GG-GAU-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCG-U-AA G-AA--UAAG ---------G 1141 -UCCGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGNN-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GC-CU- 1261 A-GU-AAG|U UAG---AAGU U-AAA-UA-A UA-UAG-C(- UC-A)A-CUA -UA-U-AA-- 1321 -AGCU-UUUA A-AAC-UGCU A-GGCUU-GA NNN-----AU G-GA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCA--UC-AU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-AC-UUG -GG------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------U -CUGGG-AGC 1741 CU--GC---- --AC-(UAA- ---C)G-CA- UUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GANACUC -AAA-NGAAU CG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------UU ---UCGG--- -AG----GGA 1981 -AUU-A--(- GAGA-)-UAA -U-UCCUU-- AC-------- --GGC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUC------- ----GA---| CUG-AA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-U A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-AAG-A(G 2881 -CGA)UCUG- ---------- AA-GCGAA-A CUCAC-AAAA -UC-U-GUC- CCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA..... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pps.vagnls 4376 bp RNA RNA 02-JUL-1998 DEFINITION Peptostreptococcus vaginalis. ACCESSION No information KEYWORDS No information. SOURCE Peptostreptococcus vaginalis. ORGANISM Peptostreptococcus vaginalis. REFERENCE 1 AUTHORS Ezaki,T., Na,L. and Yasuhiro,H. TITLE 16S ribosomal DNA sequences of Anaerobic cocci and proposal of Ruminococcus hansenii comb. nov. and Ruminococcus productus comb. nov JOURNAL Int. J. Syst. Bacteriol. 44, 130-136 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D14146|g454874 (bases 7 to 1375) GIFU 12669 = JCM 8138 BASE COUNT 393 a 275 c 380 g 310 t 3018 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-G -UGC-AU--A ACAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAAAC UNAGNUGAU- ---------- ---------- ---------- 181 ---------- ---------- ------U-UC (--UU----- ---------- ---------- 241 --------CG -)GA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAAAUU AAGUGG---- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUUA---C -ACAA-G-GG 421 -GAU-AG-CC U--------- ------UU-- G(-GAAA-)C -GAAG-A--A UAAUACC-CU 481 AU-AAC---- ---------- -------G-U CA-A--A-AN ---AUC-(-- --------GC 541 AU-------- -)-GAU---N NA-NU----G AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUG---- 661 ----UAAG-- AUG---G-|A CUUGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-CUU--(G -AGA)-GAGU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-AU-U-N --GAA--G-G CC(--UU-CG --)GG-UUGU AAA--AAUC| UUUC-CC-AU 1021 --GG-GAU-- GA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCA-U-CA G-AA--UAAG ---------C 1141 -UCCGGCU-C AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GGNG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- ACG-UAG-GC -G|-GC-CU- 1261 A-GU-AAG|U UAG---AAGU N-AAA-UA-A UA-UAG-C(- UC-A)A-CUA -UA-U-AA-- 1321 -AGCU-UUUA A-AAC-UGUU A-GGCUU-GA GAG-----AU G-AA-AGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UU-AGGAAG- AAUA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCA--UC-AU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-UU-- -------A|G -GU-UC-UUG -GA------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------U -CUGGG-AGC 1741 CU--UC---- --AC-(UAA- ---C)G-CA- UUAA-ACACU C|C|G-CCU- G-GGGAGUAC 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-NGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- --------AU ---ACGG--- -AG----GGA 1981 -AUU-A--(- GAGA-)-UAG -U-UUCCN-- AU-------- --GAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUC------- ----UA---| CUG-UA-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCAU AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-U A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAGAG GGC-A-G-C- GA-AAG-A(G 2881 -CGA)UCUG- ---------- AA-GCGAA-A CUCAC-AAAG -UC-U-GUC- CCAGUUCGGA 2941 U-UGUACUC- (UGCAAC-U- C)-GAGUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.7-ANA 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.7 ANAEROBIC_HALOPHILES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.7 ANAEROBIC_HALOPHILES. ORGANISM 2.16.7 ANAEROBIC_HALOPHILES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.7.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.7.1 HALOANAEROBACTER_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.7.1 HALOANAEROBACTER_GROUP. ORGANISM 2.16.7.1 HALOANAEROBACTER_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hla.lacuna 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobacter lacunaris str. Z-7888 DSM 6640 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobacter lacunaris str. Z-7888 DSM 6640 (T). ORGANISM Haloanaerobacter lacunaris. REFERENCE 1 AUTHORS Tourova,T.P., Boulygina,E.S., Zhilina,T.N., Hanson,R.S. and Zavarzin,G.A. TITLE Phylogenetic study of haloanaerobic bacteria by 16S ribosomal RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 18, 189-195 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6640 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37421|g1050205 Former RDP Sids: Hbac.lacun isolate_name= Z-7888 NB: former name Halobacteroides lacunaris BASE COUNT 375 a 313 c 419 g 321 t 2948 others ORIGIN 1 .......... .......... .......... ...CAAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCCUAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUU-GCGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A-AGCUA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UAGUG AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCG-GCGA- 361 -A-CG-GG-U GACU---AAC -GC-GUGGG- UUA--CCU-A C-CUCU---A -AGUU-A-GG 421 -GAU-AA-CU U--------- ------CU-- C(-GAAA-)G -GGAA-G--C UAAUACC-NN 481 AU-AUUC--- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ----UAAA-- ---GAUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -CGUAU--C- G--CUU---- 661 ----AGNG-- AUG---G-|G CCYGC----- -GU|U---CC C--AUUA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAGAGU) -A-CUACC-A A|-AGC-AA- CAA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU U---GA-U-- CGG-C|C-AC -ACUGG---A 841 (CUGA-GA-C ACG)--GCCU -NGN-C-UCC -(UACG)--G GAG-NC-UG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCAA CGCN-GY-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| NGUC-CU-UA 1021 --GG-GAA-- GA-ACAC-CU --CAG-UAG( A----UAACA -----U---) CUGC-UG-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-UG G-AG--GAAG --------CC 1141 -CUCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAAG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UGAA-GGGU- GCG-CAG-GC -U|GGU-CU- 1261 A-GY-AAN|U CAA---GAGY G-AAA-UG-C AU-CGG-C(- UC-A)A-CCG -GU-G-AAC- 1321 -UGCG-CUCG A-AAC-UACU A-GACUU-GA GAA-----UA G-CA-GAAGA GAG-U|GGAA 1381 UU-CCUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AGGAAG- AAUA-CCAA- 1441 -U-G-GC(-G AA-A)GAAG- -CUCUCUA-- ---------- ---------- ---------G 1501 CCU--NA-UU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 UC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAAC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGYAA-C G)--CGCAGA 1921 A-CAUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UAUG--- -AC----CAU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUU--- UG-------- -GCUC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GAG------- ----CA---| CAU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-CUC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GU-CU-C- U-AAG-GA-G A-CU-G-CCA --UA(-GAAA AA)AUAU-G- -G-GG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UA -AA--CACAG GGU-G-G-C- GA-GGC-U(G 2881 -CGA)AGCY- ---------- UA-GCUAA-U CCCAC-AAAU -UA-G-AUC- UCAGUUCGGA 2941 U-UGCAGAU- (UGUAAU-U- C)-AUCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCU-CGGUG- AAUAA-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-AC-ACCA -GAA-G-UCA 3121 U-U-U-A--- ---------- ---------- ---------- -----(---- CUUUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------U-A A-GU-GC-CG A-A....... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hla.lacun2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobacter lacunaris str. Z-7888 DSM 6640 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobacter lacunaris str. Z-7888 DSM 6640 (T). ORGANISM Haloanaerobacter lacunaris. REFERENCE 1 AUTHORS Patel,B.K., Andrews,K.T., Ollivier,B., Mah,R.A. and Garcia,J .L. TITLE Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene JOURNAL FEMS Microbiol. Lett. 134, 115-119 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6640 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32593 Former RDP Sids: Hbac.lacu2 isolate_name= Z-7888 NB: former name Halobacteroides lacunaris BASE COUNT 393 a 325 c 440 g 330 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUU-GCGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A-AGCUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAGUG AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UUA--CCU-A C-CUCU---A -AGUU-A-GG 421 -GAU-AA-CU U--------- ------UU-- C(-GAAA-)G -GGAA-G--C UAAUACC-UA 481 AU-AUUC--- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ----UAAA-- ---GAUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UA-GU-( GU-AAG-AG) -A-CUACC-A A|-AGC-AA- CAA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-CU-AA 1021 --GG-GAA-- GA-ACAC-CU --CAG-UAG( A----UAACA -----U---) CUGC-UG-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -CUCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GAGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UGAA-GGGU- GCG-CAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAA---GAGU G-AAA-UC-C AU-CGG-C(- UC-A)A-CCG -GU-G-AAC- 1321 -UGCU-UUUG A-AAC-UACU A-GACUU-GA GAA-----UA G-GA-GAAGA GAG-U|GGAA 1381 UU-CCUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AGGAAG- AAUA-CCAN- 1441 -U-G-GC(-G AA-A)GCAG- -CUCUCUA-- ---------- ---------- ---------G 1501 CCU--AA-UU CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 UC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -G-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(N CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-U-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CAUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UAUG--- -AC----CAU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUU--- UG-------- -GCUC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GAGU------ ----CA---| CAU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCA --UA(-GAAA AA)AUAU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UA -AA--CAGAG GGU-G-G-C- GA-GAC-U(G 2881 -CGA)AGCC- ---------- AA-GCUAA-U CCCAC-AAAU -UA-G-AUC- UCAGUUCGGA 2941 U-UGCAGAU- (UGUAAU-U- C)-AUCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAA-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-AC-ACCA -GAA-G-UCA 3121 U-U-U-A--- ---------- ---------- ---------- -----(---- CUUUUG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------U-A A-GU-GC-CG A-AGGU-GUG CCC-GA-UA- AGG-GGNG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUAA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbac.halob 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halobacteroides halobius str. Z-7287 DSM 6639. ACCESSION No information KEYWORDS No information. SOURCE Halobacteroides halobius str. Z-7287 DSM 6639. ORGANISM Halobacteroides halobius. REFERENCE 1 AUTHORS Tourova,T.P., Boulygina,E.S., Zhilina,T.N., Hanson,R.S. and Zavarzin,G.A. TITLE Phylogenetic study of haloanaerobic bacteria by 16S ribosomal RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 18, 189-195 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6639 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37423|g1050204 isolate_name= Z-7287 BASE COUNT 386 a 309 c 447 g 327 t 2907 others ORIGIN 1 .......... .......... .......... ...UAAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUU-GGGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A--GCUA--C (--UU----- ---------- ---------- 241 --------CG -)GG-UAGUG AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCG-GCGG- 361 -A-CG-GG-U GAGY---AAC -GC-GUGGG- UAA--UCU-G C-CUUU---A -AGUU-A-AG 421 -GAU-AA-CU U--------- ------CU-- C(-GAAA-)G -GGAA-G--C UAAUACU-UA 481 AU-AAUAG-- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ----UAAA-- ---GAUGGC- ---------- 601 --(------- ----UUU--- ---)------ ---------| -CGUAU--C- G--CUU---- 661 ----AAAG-- AAG---A-|G CCUGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACY-A A|-GGC-AA- CAA------- -----UG-G- 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC- -NGN-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCAA CGCU-GY-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| NGUC-CU-UA 1021 --GG-GAA-- GA-ACAC-CC --YAG-UAG( A----UAAUA -----C---) CUGC-UG-GG 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -CUCGGCU-A AUUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAA |-GAGG-C-- 1201 NAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UGAA-GGGU- GCG-CAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAA---GAGU G-AAA-UC-C AU-CGG-C(- UC-A)A-CCA -GU-G-AAC- 1321 -UGGG-UUUG A-AAC-UAUU A-GACUU-GA GGA-----CA G-GA-GAAGG AAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AGGAAG- AAUA-CCAA- 1441 -Y-G-GC(-G AA-G)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 UCU--GA-UC CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UA-GAG-UA- 1561 UC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UU----CUA- G-CU-GU--A 1621 AAC-G-CUGG A--CA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GUAAU UC-CCGGG-G -G-C-C---G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGYAA-C G)--CGAAGA 1921 A-CAUUA-CC AGG-GU-UUG ACA-UC|-CU AUGACCAU-C ---UAUG--- -AC----CAU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUC--- UG-------- -GCUC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GAG------- ----CA---| NAK-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GY NACCC-CU-G |-UU--CUU- 2281 AG--UUGC-U AG-C------ ---------- ---------- -CUG(---UA ---AUG--)G 2341 C--------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GU-CU-C- U-AAG-GC-G A-CU-G-CUA --CA(-GGAA AA)-UGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -R-AGUC-AU CAU-G-CU-C CUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UA -AA--CAGAG GGU-A-G-C- AA-UAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CUCAC-AAAU -UA-G-AUC- UCA.....GA 2941 U-UGCAGAU- (UGCAAU-U- C)-ACCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAU-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCY- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-AC-ACCA -GAA-G-UCA 3121 U-U-C-G-C- ---------- ---------- ---------- -----(---- -AAUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----G-C-G A-NU-GC-CG A-AGGU-GGG CCU-GA-UA- AGG-GNGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCU-GG.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hla.chitnv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobacter chitinovorans str. W5C8 OCM 229 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobacter chitinovorans str. W5C8 OCM 229 (T). ORGANISM Haloanaerobacter chitinovorans. REFERENCE 1 AUTHORS Patel,B.K., Andrews,K.T., Ollivier,B., Mah,R.A. and Garcia,J .L. TITLE Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene JOURNAL FEMS Microbiol. Lett. 134, 115-119 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32596 isolate_name= W5C8 BASE COUNT 337 a 282 c 380 g 279 t 3098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUU-GCGC 121 C--AGA---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A--GCUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAGUG AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCG-GNGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--UCU-A C-CUUU---A -AGUU-A-AG 421 -GAU-AA-CU U--------- ------CU-- C(-GAAA-)G -GAAA-G--C UAAUACU-UA 481 AU-AAUAA-- ---------- ---------- ---------- -------(-- ---------- 541 ---------- -)-------- ---------- ----UAAA-- ---GAUGGC- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----AGAG-- AUG---A-|G CCCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AAG-GG) -C-CUNCCNA A|-GGC-AA- CAA------- -----UG-G- 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-N-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-G 901 GGG-AAUC.. .......... ......(... .)........ .GGA|-GCAA ---------U 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGC -AA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACAA-AC --CAG-UUG( A----UAAUA -----C---) CAGC-UG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -CUCGGCU-A AUUAC-GUG( C--CAGAAGC CGCGGUA-A) U-A-C-GUAA |-GAGG-C-- 1201 UAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UUAA-GGGU- GCG-CAG-CG -G|-GU-CU- 1261 A-GU-AAG|U CAA---GAGU G-AAA..... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(AUAA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(UCA-AC)U ---------- ---------- ---------- -------CCC -CUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUGUC C|C|G-CCU- G-GGGAUUAC 1801 GNC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CAUUA-CC AGG-GU-UUG ACA-UC|--- ---------C ---UAUG--- -AC----CAU 1981 -CUG-U--(- GAAA-)-GCA -G-AGUU--- UG-------- -GCUC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GAGU------ ----CA---| CAU-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-A G-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-C------ ---------- ---------- -ACG(---UA ---AUG--)G 2341 U--------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --CA(-GAAA AA)AUGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-A-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-UA -AA--CAGAG GGA-A-N-C- AA-GAC-U(G 2881 -CGA)AUCC- ---------- AA-GCGAA-U CUCAC-AAAU -UA-G-AUC- UCAGUUCGGA 2941 U-UGCAGAU- (UGUAAU-U- C)-AUCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAU-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-AC-ACCA -GAA-G-UCA 3121 U-U-U-G-C- ---------- ---------- ---------- -----(---- -GAUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----G-C-A A-GU-GC-CG A-AGGU-GUG CCU-GA-UA- AGG-GGAG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUAA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbac.halo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halobacteroides halobius str. MD-1 ATCC 35273 (T). ACCESSION No information KEYWORDS No information. SOURCE Halobacteroides halobius str. MD-1 ATCC 35273 (T). ORGANISM Halobacteroides halobius. REFERENCE 1 AUTHORS Patel,B.K., Andrews,K.T., Ollivier,B., Mah,R.A. and Garcia,J .L. TITLE Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene JOURNAL FEMS Microbiol. Lett. 134, 115-119 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35273 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32595 isolate_name= MD-1 BASE COUNT 401 a 329 c 440 g 330 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGN-G -UGN-UU--A ACAC-AUGCA A-GUU-GUGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A-AGUUA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAACA AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- UAA--UCU-A C-CUUU---A -AGUC-U-GG 421 -GAU-AA-CU C--------- ------UU-- C(-GAAA-)G -AGGG-G--C UAAUACC-AG 481 AU-AUA---- ---------- ---------- ---------- ---CUC-(-- --------CU 541 UG-G------ -)-GAG---- ---------- ----GAAA-- ---GAUGGU- ---------- 601 --(------- ----AUU--- ---)------ ---------| -ACUAU--U- G--CUU---- 661 ----AAAG-- AUG---A-|G CUUGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-AG --)GG-UCGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAA-- GA-ACAC-UU --UAG-UAG( A----GAAUU -----A---) CUGC-UA-GA 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-UA A-AG--GAAG ---------C 1141 -CCCGGCU-A AUUAC-GUG( CCA--GCAGC CGUGGUA-A) C-A-C-GUAA |-GGGG-C-- 1201 UAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UGAA-GGGU- ACG-CAG-GC -G|-GU-CU- 1261 A-GC-AAG|U CAA---GAGU G-AAA-AC-C AU-CGG-C(- UC-A)A-CCN -AU-G-AAG- 1321 -UGCU-UUUG A-AAC-UGUA A-GACUU-GA GAC-----CA A-GA-GGGGA AGA-U|GGAA 1381 UU-CCUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UC-AGGAAG- AAUA-CCAN- 1441 -U-G-GC(-G AA-A)GCAG- -UCUUCUG-- ---------- ---------- ---------G 1501 CUU--GA-CU CUGACC-CUG AG-G------ -------UA- C-GAAA-GC- UA-GGG-UA- 1561 UC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- N-CU-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 CG--UA---- --GU-(UAA- ---C)G-CU- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-CG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-AC-UUG ACA-UC|--- ---------C ----CUG--U GAU----CGU 1981 -UCU-U--(- UAAC-)-AAG -A-ACUU--- UU-------- -CCUU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GAA------- ----CA---| CAG-A--UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GU AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---GUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --CG(-GAAG CA)ACGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-UA -UA--CAGAG GGG-A-G-C- GA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-U CCCCA-AAAG -UA-G-ACC- UCAGUUCGGA 2941 U-UGCAGAU- (UGCAAC-U- C)-AUCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUCC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- GG-GC-ACCA -GAA-G-UCA 3121 C-UGA-C-CU -AA------- ---------- ---------- -----(---- CUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAAG-G-A A-GU-GC-CG A-AGGU-GUG CCC-GA-UA- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUAA|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ach.arabat 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetohalobium arabaticum str. Z-7288. ACCESSION No information KEYWORDS No information. SOURCE Acetohalobium arabaticum str. Z-7288. ORGANISM Acetohalobium arabaticum. REFERENCE 1 AUTHORS Tourova,T.P. JOURNAL Thesis, Genosystematic and evolution of bacteria, Institute of Microbiology of Russian Academy of Science (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21975|g288381 (bases 1 to 165) isolate_name= Z-7288 BASE COUNT 125 a 119 c 148 g 105 t 3879 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... ..G-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(CG AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GA-CC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-C-- -GG(AUUA-G AUAC)-CC-- ----GGUA-G UC----CU-- G-CU-GU--A 1621 A-C-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAUC C|-|G-CCU- G-GGUAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAUCUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAG-AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----UA. 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.ACU -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCA --GU(-CA-A AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAGAG GGC....... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ach.araba2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetohalobium arabaticum str. Z-7288 DSM 5501 (T). ACCESSION No information KEYWORDS No information. SOURCE Acetohalobium arabaticum str. Z-7288 DSM 5501 (T). ORGANISM Acetohalobium arabaticum. REFERENCE 1 AUTHORS Tourova,T.P., Boulygina,E.S., Zhilina,T.N., Hanson,R.S. and Zavarzin,G.A. TITLE Phylogenetic study of haloanaerobic bacteria by 16S ribosomal RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 18, 189-195 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 5501 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37422|g1050188 isolate_name= Z-7288 BASE COUNT 349 a 339 c 445 g 326 t 2917 others ORIGIN 1 .......... .......... .......... ...NNNUCGG AGAGUU(U-G A)U-CCU|UG 61 GCUCAG-GAC -GAAC-G--- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GCGC 121 CG-AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A-AGC-G-CU (-CUU----- ---------- ---------- 241 --------UG -)AG-CAGUU AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CGU--GYGG- 361 -G-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--UCU-A C-CUUU---A -AGUC-U-GA 421 -UAU-AA-CU U--------- ------CU-- C(-GAAA-)G -GGAA-G--C UAAUUUC-GG 481 AU-AUU---- ---------- -------A-U GC-U--G-CU ---GGA-(-- --------UA 541 AC-------- -)-CAG---G CK-GG----C AU--CAAA-- ---GGCGGC- ---------- 601 --(------- ---UUUUU-- ---)------ ---------| -GCCUC--C- G--CUU---- 661 ----UUAG-- AUG---U-|G CUCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-UCACU-A A|-GGC-AA- CAA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCG -UGU-C-UCC -(UACG)--G UAG-NC-UG- C-A---GU-G 901 GGG-UAUCUU U-CGCAAU-- GA-UGC(GCA A)-GCU-UGA CGAA|-GCGA CGCC-GY-GU 961 G-A-GU-G-A U-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| NGUC-CU-CA 1021 --GG-GAA-- GA-ACAU-CU --UAG-UAG( U----GAAUA -----A---) CUGC-UU-GG 1081 ---------- -------C-U U-GG-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC NUCGGUA-A) U-A-C-GUAG |-GGAG-Y-- 1201 NAG-GCUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GU-CU- 1261 G-GC-AAG|U CAA---GUGU G-AAA-UG-U AU-CGG-C(- UU-A)A-CUG -AU-A-CAC- 1321 -UGCG-CUUG A-AAC-UGUC A-GGCUU-GA GGG-----YA A-GA-GAAGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GA-CC CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- UA-GGG-UA- 1561 GC-NAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUG- G-CU-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUU -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----UAU 1981 -CUG-U-C(- AACA-)-GCA -G-AAUU--- UG-------- -GUCC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGAU------ ----CA---| CAC-GG-UGA |---C|A--G 2161 GA-GG-AGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GG GACCC-CU-G |-AC----U- 2281 AG--UUGC-U AG-CG----- ---------- ---------- --AU(---UA ---AUG--)C 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------CG|G 2701 G-GU-CU-C- U-AAG-GA-G A-CU-G-CUA --GU(-CA-A AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU UAU-G-CC-C CUUAU-G-CU -CC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAGAG GGC-G-G-C- UA-UAC-C(G 2881 -CAA)GGUU- ---------- UA-GCUAA-U CCUC--AAAA -CA-G-GUC- CCAGUUCGGA 2941 U-UGCUGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-AGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCG 3121 U-C------- ---------- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GC-GC-CG A-AGGU-UYG UCC-GG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Shb.lortet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporohalobacter lortetii str. MD-2 ATCC 35059. ACCESSION No information KEYWORDS No information. SOURCE Sporohalobacter lortetii str. MD-2 ATCC 35059. ORGANISM Sporohalobacter lortetii. REFERENCE 1 AUTHORS Bhupathiraju,V.K., Oren,A., Sharma,P.K., Tanner,R.S., Woese ,C.R. and McInerney,M.J. TITLE Haloanerobium salsugo sp. nov., a moderately halophilic, anaerobic bacterium from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 44, 565-572 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35059 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59122 ATCC 35059 = DSM 3070 isolate_name= MD-2 BASE COUNT 374 a 355 c 442 g 316 t 2889 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.......GG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GCGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A A-AGCUG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UAGUU AGU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AA--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--UCU-A C-CUUU---A -AGUU-C-GG 421 -UAU-AA-CU U--------- ------UU-- C(-GAAA-)G -GAAA-G--C UAAUUCC-GG 481 AU-AUU---- ---------- -------A-U AC-U--U-UC ---UGC-(-- --------AC 541 AA-------- -)-GCA---G AU-UG----U AU--UAAA-- ---GACGGC- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCCUU--C- G--CUU---- 661 ----AAAG-- AUG---A-|G CUCGC----- -GU|----CC C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-UCACC-A A|-AGC-UA- CGA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCGA CGCN-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)AG-UCGU AAA--GCUC| AGUC-CU-CA 1021 --GG-GAA-- GA-ACAU-CC --CGG-UUG( G----AAAUA -----C---) CUAC-CG-GG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-CAG-GC -G|-GC-CU- 1261 G-GC-AAG|U CAA---GUGU G-AAA-UG-U AU-CGG-C(- UU-A)A-CCG -AU-A-CAC- 1321 -UGCG-CUUG A-AAC-UGUC A-GACUU-GA GGG-----CA A-GA-GAAGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GA-CC CUGACG-CUG AG-G------ -------CA- C-NAAA-GC- UA-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CUA- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCA-AC)U ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CG- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CU--G 1861 C-A--CA-AG CGGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----UAU 1981 -UUG-U-C(- AACA-)-GCA -A-AGUU--- CA-------- -GCUC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GAGC------ ----UG---| CAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGG-GA-G A-CU-G-CCA --GU(-CA-A AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-UG -UA--CAGGA GGC-U-G-C- UA-CAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-U CCUC--AAAA -CA-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGC-UG -GAGU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUUC-GUU- CCC-AGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCG 3121 C-C------- ---------- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GC-GC-CG A-AGGU-GUG UCC-AA-UA- AG........ 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.7.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.7.2 HALOANAEROBIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.7.2 HALOANAEROBIUM_GROUP. ORGANISM 2.16.7.2 HALOANAEROBIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Htt.orenii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halothermothrix orenii str. H168 (T) OCM 544. ACCESSION No information KEYWORDS No information. SOURCE Halothermothrix orenii str. H168 (T) OCM 544. ORGANISM Halothermothrix orenii. REFERENCE 1 AUTHORS Cayol,J.-L., Ollivier,B., Patel,B.K.C., Prensier,G., Guezennec,J. and Garcia,J.-L. TITLE Isolation and characterization of Halothermothrix orenii gen. nov. sp. nov., a halophilic and thermophilic fermentative, strictly anaerobic bacterium JOURNAL Int. J. Syst. Bacteriol. 44, 534-540 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22016 geog_source= Chott El Guettar, Tunisia, 40-60 cm depth biol_source= Tunisian salted lake sediments isolate_name= H168 (T) BASE COUNT 345 a 356 c 481 g 278 t 2916 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..GGA G-CUC-CAGC 121 G--GU-GG-C GG---CCG-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CUC-UA (--GA----- ---------- ---------- 241 --------AC -)UA-GUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- CCG|GGC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGA- GAA--CCU-G U-CUUU---C -AGUC-C-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)C -CGGG-G--C UAAUCCC-GG 481 AU-AGA---- ---------- -------C-U GU-C--G-GA ---UGA-(-- --------GC 541 AU-------- -)-UCA---A CU-GA----C AG--GAAA-- ---GGCGGU- ---------- 601 --(------- ----UUA--- ---)------ ---------| -UCCGU--U- G--CUG---- 661 ----AGAG-- AGG---C-|G UCCGC----- -GU|----CG G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-CG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A C-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCCC| UGUC-CU-CA 1021 --GG-GAA-- GA-ACCC-UU --ACA-GGA( G-----GAAA -----U---) GCCU-GU-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CCUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGGG-C-- 1201 GAA-CGUUGU CC-GGAAUUA -CU-GUGC|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UA- 1261 G-GC-AAG|U CAA---AUGU G-AAA-UC-C GU-CGG-C(- UC-A)A-CCG -GC-G-AAU- 1321 -AGCA-UUUG A-AAC-UGCC U-AUCUU-GA GUG-----CA G-GA-GAGGG AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AU)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CG- AUAA-GUGUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-GC-UUG ACA-UC|--- ---------C ---CGUG--- -AC----UAC 1981 -CUG-U--(- GAGA-)-GCA -G-GGUU--- UG-------- --CU------ --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- AG-------- ----CC---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-C- U-AGG-AA-G A-CU-G-CC. ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-G-CC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGC-A-G-C- GA-AAC-C(- 2881 -CGC)AAGG- ---------- GA-CGUAA-U CUCAA-AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC.....(.. .....AU)-N NNG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-CGG- AU-GC-ACCA -GAA-G-UCA 3121 C-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-GU-GC-CG A-AGGU-GUG UCU-GG-UA- AGG-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UUA~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.salsug 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium salsugo str. VS-752 (T) ATCC 51327. ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium salsugo str. VS-752 (T) ATCC 51327. ORGANISM Haloanaerobium salsugo. REFERENCE 1 AUTHORS Bhupathiraju,V.K., Oren,A., Sharma,P.K., Tanner,R.S., Woese ,C.R. and McInerney,M.J. TITLE Haloanerobium salsugo sp. nov., a moderately halophilic, anaerobic bacterium from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 44, 565-572 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51327 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22890 Former RDP Sids: Han.salisl biol_source= hypersaline oilfield brine isolate_name= VS-752 (T) NB: same oil field Arhodomonas isolate BASE COUNT 396 a 320 c 460 g 320 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUUAUACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCCUG ACAGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAAGAC AGGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-G U-CCUC---N -AUUC-C-AG 421 -GAU-AA-CC A--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-GG 481 AU-AAG---- ---------- -------C-U GA-G--A-GA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U CA-AU----C AG--AAAA-- ---GGUGCU- ---------- 601 --(------- ----UUU--- ---)------ ---------| -AGCAU--C- G--UUU---- 661 ----GAGG-- AGG---G-|G UCCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GAU-GUA( G-----GUAA -----U---) GGCA-UC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-A-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 U-AA-AAG|U CAG---ACGU G-AAA-GG-U GU-CGG-C(- UC-A)A-CCG -AC-A-GAC- 1321 -GGCG-UUUG A-AAC-UGUA U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AA)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AGUU--- UA-------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGN AA-------- CGAG-C--GC AACCC-CU-G |-UU--CCU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AGG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG GGU-A-G-C- AA-UAU-C(G 2881 -CAA)GAUG- ---------- GA-GCAAA-U CCUAU-AAAA -CC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AUCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGU-GUG UCU-GG-UA- AGA-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.lacur2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium lacuroseus str. H200 DSM 10165 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium lacuroseus str. H200 DSM 10165 (T). ORGANISM Haloanaerobium lacuroseus. REFERENCE 1 AUTHORS Cayol,J.-L., Ollivier,B., Patel,B.K.C., Ageron,E., Grimont,P .A., Prensier,G. and Garcia,J.-L. TITLE Haloanaerobium lacusroseus sp. nov., an extremely halophilic fermentative bacterium from the sediments of a hypersaline lake JOURNAL Int. J. Syst. Bacteriol. 45, 790-797 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 10165 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L39787|g1235796 geog_source= Retba Lake, Senegal biol_source= sediments isolate_name= H200 BASE COUNT 402 a 337 c 473 g 332 t 2832 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACUGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGACGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAU- UAA--UCU-G U-CCUC---A -ACUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAACCCC-GG 481 AU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUGGU- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-UG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- G-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GAU-GUA( G----UUCAA -----U---) GACA-UC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-G-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCG -AC-A-GAC- 1321 -UGCG-UUUG A-AAC-UGAU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-CUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AA)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAAUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAAA-)-GUA -G-AGUU--- UG-------- -ACAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GUGU------ ----CA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-AUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGAG GGG-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CCUUU-AAAA -CC-A-ACC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AUCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGU-GUG UCC-GG-CA- AGA-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbac.aceet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halobacteroides acetoethylicus str. EIGI DSM 3532 (T). ACCESSION No information KEYWORDS No information. SOURCE Halobacteroides acetoethylicus str. EIGI DSM 3532 (T). ORGANISM Halobacteroides acetoethylicus. REFERENCE 1 AUTHORS Patel,B.K., Andrews,K.T., Ollivier,B., Mah,R.A. and Garcia,J .L. TITLE Reevaluating the classification of Halobacteroides and Haloanaerobacter species based on sequence comparisons of the 16S ribosomal RNA gene JOURNAL FEMS Microbiol. Lett. 134, 115-119 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 3532 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U32594 isolate_name= EIGI BASE COUNT 401 a 329 c 471 g 323 t 2852 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACAGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------A-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAAGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-C-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-GG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AA--AAAG-- ---GUGG-C- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GGNAG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GAU-GUA( G-----UCAA -----U---) GACA-UC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCN -AC-A-GAC- 1321 -UGCG-UUUG A-AAC-UGGU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AU)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AGUU--- UG-------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A --)------- GUGC------ ----CA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAGAG GGG-A-G-C- AA-AGC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AUCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGU-GUG UCC-GG-UA- AGA-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.praeve 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium praevalens. ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium praevalens. ORGANISM Haloanaerobium praevalens. REFERENCE 1 AUTHORS Bhupathiraju,V.K., Oren,A., Sharma,P.K., Tanner,R.S., Woese ,C.R. and McInerney,M.J. TITLE Haloanerobium salsugo sp. nov., a moderately halophilic, anaerobic bacterium from a subterranean brine JOURNAL Int. J. Syst. Bacteriol. 44, 565-572 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59123 ATCC 33744 = DSM 2228 (T) BASE COUNT 399 a 327 c 460 g 336 t 2854 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACUGAU---- ---------- ---------- ---------- 181 ---------- ---------- ------A--C (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAAGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-AG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUG-C- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCN-GN-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GGU-AUA( G-----UAAA -----U---) GCUA-CC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--NCAGC CGCGGUA-A) U-A-C-GUAG |-AGUN-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCG -AC-N-GAC- 1321 -UGUG-UUUG A-AAC-UGGU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-NAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUN-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AA)U ---------- ---------- ---------- --------CC -UUCAG-CGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AAUU--- U--------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGG-A-G-C- UA-AGC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AUCG A--GU-UGG- GU-GC-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGU-GUG CCC-GG-CA- AGA-GGGG.. 3301 .......... GUAA-CAAG. ......GUAC C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UCU~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.alclph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium alcaliphilum str. GSLS DSM 8275 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium alcaliphilum str. GSLS DSM 8275 (T). ORGANISM Haloanaerobium alcaliphilum. REFERENCE 1 AUTHORS Tsai,C.-R., Garcia,J.-L., Patel,B.K.C., Cayol,J.-L., Baresi ,L. and Mah,R.A. TITLE Haloanaerobium alcaliphilum sp. nov., an anaerobic moderate halophile from the sediments of Great Salt Lake, Utah JOURNAL Int. J. Syst. Bacteriol. 45, 301-307 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 8275 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81850|g757858 isolate_name= GSLS BASE COUNT 388 a 315 c 456 g 317 t 2900 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GCC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GU----C UA---CCUCG ACUGA----- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GAUGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-AG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AA-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UC-CG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GGU-AUA( G-----UAAA -----U---) GCUA-CC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCG -AC-A-GAC- 1321 -UGCG-UUUG A-AAC-UGGU U-AUCUU-GA GUG-----UA A-CA-CGAGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCG- ----GUAA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -GG-G----- -U-------- 1681 -(UCG-AU)U ---------- ---------- ---------- --------CC -CUCAC-AGG 1741 UG--GA---- --GU-(UAA- ---C)G-GA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AAUU--- UA-------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUU- 2281 AG--UUGN-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GA -UA--CAGAG GGG-A-G-C- UA-AGC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GGAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-NNNNN- NAUAC-GUN- CCC-GGC-C. .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... G-AU-GC-CA A-AGGU-GUC UCC-GG-CA- CNG-GGGA-A 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.sacsen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium saccharolyticum subsp. senegalensis str. H150. ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium saccharolyticum subsp. senegalensis str. H150. ORGANISM Haloanaerobium saccharolyticum. REFERENCE 1 AUTHORS Patel,B.K.C., Cayol,J., Ollivier,B. and Garcia,J. TITLE The phylogenetic position of Haloincola saccharolytica and a proposal to reclassify it as a member of Haloanaerobium, Haloanaerobium saccharolyticum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49116|g1143454 isolate_name= H150 NB: no CCdeposit info, seq equiv=DSM 7379 BASE COUNT 391 a 314 c 464 g 319 t 2888 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACUGA----- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GACGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-AG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A G|-GGC-AA- UAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-GAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GGU-AUA( G-----UAAA -----U---) GCUA-CC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCG -AC-A-GAC- 1321 -UGCG-UUUG A-AAC-UGAU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AU)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AGUU--- UA-------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAGAG GGG-A-G-C- AA-AGC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GGAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGA-AU)-A CUG-CGG... .......... .......... .......... 3061 .......... .......... .......... .......... ....C-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGU-GUG UCC-GG-UA- AGA-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.sacsa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787 DSM 6643 (T). ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787 DSM 6643 (T). ORGANISM Haloanaerobium saccharolyticum. REFERENCE 1 AUTHORS Tourova,T.P., Boulygina,E.S., Zhilina,T.N., Hanson,R.S. and Zavarzin,G.A. TITLE Phylogenetic study of haloanaerobic bacteria by 16S ribosomal RNA sequence analysis JOURNAL Syst. Appl. Microbiol. 18, 189-195 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 6643 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37424|g1050208 Former RDP Sids: Hi.sacchar isolate_name= Z-7787 NB: papers lists species name as saccharolytica former name Haloincola saccharolyticum BASE COUNT 380 a 308 c 451 g 327 t 2910 others ORIGIN 1 .......... .......... .......... ...AAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACUGAA---- ---------- ---------- ---------- 181 ---------- ---------- ------A--C (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UCCCGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -U-CG-GG-U GAGU---AA- -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--- UAAUCCG-AG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUG-C- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACU-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCU -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCN-GN-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| NGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GGU-AUA( G-----UAAA -----U---) GCUA-CC-CY 1081 ---------- ---------C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GYAGC CGCGGUA-A) U-A-C-CUAG |-AGUG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-UAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCG -AC-N-GAC- 1321 -UGCG-UUUG A-AAC-UGAU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUGGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A CU-UGGAAG- AACA-CUAG- 1441 -U-G-GC(-G AA-G)GCGU- -CUCUYUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGUCG-CUG AG-G------ -------UA- C-NAAA-GC- UG-GGG-GA- 1561 GC-GGA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUN-G UC----CCN- G-AU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AA)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CN--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|N|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGYAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AGUU--- U--------- -ACGC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--CUU- 2281 AG--UUGC-U AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAGAG GGG-A-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GAAUUCGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-AUCG A--GU-UGG- AU-GC-ACCA -GAA-G-UCA 3121 U-C------- ---------- ---------- ---------- -----(---- -UGCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- G-AU-GC-CA A-AGGY-GGG UCC-GG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Han.sacsac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787. ACCESSION No information KEYWORDS No information. SOURCE Haloanaerobium saccharolyticum subsp. saccharolyticum str. Z-7787. ORGANISM Haloanaerobium saccharolyticum. REFERENCE 1 AUTHORS Patel,B.K.C., Cayol,J., Ollivier,B. and Garcia,J. TITLE The phylogenetic position of Haloincola saccharolytica and a proposal to reclassify it as a member of Haloanaerobium, Haloanaerobium saccharolyticum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49115|g1143455 isolate_name= Z-7787 NB: no CCdeposit info, seq equiv=DSM 6645 (DSM 6643?) BASE COUNT 380 a 305 c 445 g 305 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GU----C UA---CCUCG ACUGA----- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GACGAC GAGAUC---- UAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--UCU-G U-CCUC---A -AGUC-U-GG 421 -GAU-AA-CC U--------- ------GG-- C(-GAAA-)G -UCGG-G--C UAAUCCG-AG 481 GU-AAG---- ---------- -------C-U GA-G--A-GU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A CA-AU----C AG--AAAA-- ---GGUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCCAU--C- G--UUU---- 661 ----GAGG-- AGG---A-|G UUCGC----- -GG|----UA G--AUUA-G- CUA-G---CU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A G|-GGC-AA- CAA------- -----UC-UA 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GA-U-- CAG-U|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-AG --)GA-UUGU AAA--GCUC| UGUC-CU-UA 1021 --GG-GAA-- GA-ACCG-UG --GGU-AUA( G-----UAAA -----U---) GCUA-CC-CA 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-UG G-AG--GAAG ---------C 1141 -ACUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AGUG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UA- 1261 A-UC-AAG|U CAA---GCGU G-AAA-GG-U GU-CGG-C(- UU-A)A-CCC -AC-A-GAC- 1321 -UGCG-UUUG A-AAC-UGAU U-AUCUU-GA GUG-----UA A-CA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GUG(-G UGAAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GUU--AA-CA CUGACG-CUG AG-G------ -------UA- C-GAAA-GC- UG-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CCA- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- -U-------- 1681 -(UCG-AA)U ---------- ---------- ---------- --------CC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAUUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GAG-AA-UUG ACA-UC|--- ---------C ---CGUG--- -AC----CAU 1981 -CUA-U--(- GAGA-)-GUA -G-AGUU--- UA-------- -GCAC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U --)------- GUGC------ ----UA---| CAC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--CUU- 2281 AG--UUGC-C AG-CGA---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-GA-CU-C- U-AAG-AA-G A-CU-G-CCG --GU(-G--A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-CC-C UUUAU-A-UC -UC--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAGAG GGG-A-G-C- AA-AGC-C(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CCUUG-AAAA -UC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGUA -UGAAGU-UG -GGAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AAN-NN)G. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... G-AU-GC-CA A-AGGU-GUG UCC-GG-UA- AGA-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUCAACCUC 3361 CU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8-BAC 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION. ORGANISM 2.16.8 BACILLUS-LACTOBACILLUS-STREPTOCOCCUS_SUBDIVISION. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.1 ALICYCLOBACILLUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.1 ALICYCLOBACILLUS_GROUP. ORGANISM 2.16.8.1 ALICYCLOBACILLUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.acical 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus acidocaldarius str. 104-1A DSM 446 (T). ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus acidocaldarius str. 104-1A DSM 446 (T). ORGANISM Alicyclobacillus acidocaldarius. REFERENCE 1 AUTHORS Wisotzkey,J.D., Jurtshuk,P., Fox,G.E., Deinhard,G. and Poralla,K. TITLE Comparative sequence Analyses on the 16s rRNA of Bacillus acidocaldarius Bacillus acidoterrestris and Bacillus cycloheptanicus: Proposal for the creation of a new Genus Alicyclobacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 263-269 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 446 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60742 Former RDP Sids: B.acidoc46 DSM 446 (T) = NCIMB 11725 = ATCC 27009 geog_source= Nymph Creek, Yellowstone National Park biol_source= acid, hot water isolate_name= 104-1A NB: former name Bacillus acidocaldarius BASE COUNT 351 a 377 c 519 g 243 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC UUC....-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|.UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---C -AGAC-C-GG 421 -AAU-AA-CG C--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-C CG-C--G-A- ---GGA-(-- --------GG 541 CA-------- -)-UCU---U CU-UG----C GG-GGAAA-- ---GGCCC-- ---------- 601 --(------- ---GAUU--- ---)------ ---------| --GGGC--C- A--CUG---- 661 ----AGAG-- AGG---A-|G CCCGC----- -AG|----CG C--AUUA-G- CUC-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GC-UC 1021 --GG-GGA-- GA-GCGG-CA --UGG-GGA( G----UGGAA -----A---) GCCC-CA-UG 1081 ---------- -------C-G A-GA-CGGU- A-CCG-A-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CG- 1261 A-GC-AAG|U CUG---GAGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCA -UG-G-GAU- 1321 -GGCU-CUGG A-AAC-UGCU U-GACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-AC-A-)- ---------- ---------- ---------- -------CAC -CCCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCU--- GAC----CGG 1981 -UGC-G--(- GAGA-)-UGC -A-CCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUG- 2281 UG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UU ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-CAG-GU-G A-CU-G-CCG --GC(-G--U AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUGAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-CUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCCC-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.acite2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus acidoterrestris. ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus acidoterrestris. ORGANISM Alicyclobacillus acidoterrestris. REFERENCE 1 AUTHORS Wisotzkey,J.D., Jurtshuk,P., Fox,G.E., Deinhard,G. and Poralla,K. TITLE Comparative sequence Analyses on the 16s rRNA of Bacillus acidocaldarius Bacillus acidoterrestris and Bacillus cycloheptanicus: Proposal for the creation of a new Genus Alicyclobacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 263-269 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60743 Former RDP Sids: B.acidoc23 NB: former name Bacillus acidoterrestris BASE COUNT 345 a 373 c 527 g 246 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UU (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---C -AGAC-C-GG 421 -AAU-AA-NG C--------- ------CC-- G(-GAAA-)C -GGGC-G--C UGAUGCC-GG 481 AU-ACG---- ---------- -------C-C CG-C--G-A- ---GGA-(-- --------GG 541 CA-------- -)-UCU---U CU-UG----C GG-GGAAA-- ---ACGGCC- ---------- 601 --(------- ---GAUU--- ---)------ ---------| --GGGC--C- G--CUG---- 661 ----AGAG-- AGG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-N N-NNN--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GC-UC 1021 --GG-GGA-- GA-GCGG-CA --UGG-GGA( G----UGGAA -----A---) GCCC-CA-UG 1081 ---------- -------C-G A-GA-CGGU- A-CCG-A-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CG- 1261 A-GC-AAG|U CUG---GAGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCA -UG-G-GAU- 1321 -GGCU-CUGG A-AAC-UGCU U-GACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-AC-A-)- ---------- ---------- ---------- -------CAC -CCCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC GGG-GC-UUG ACA-UC|--- ---------C ---CUCU--- GAC----CGG 1981 -UGC-G--(- GAGA-)-UGC -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AAUCC-UU-G |-AC--CUG- 2281 UG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UU ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-CAG-GU-G A-CU-G-CCG --GC(-G--U AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUGAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-CUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCCC-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.acica2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus acidocaldarius str. 104-1A NCIMB 11725. ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus acidocaldarius str. 104-1A NCIMB 11725. ORGANISM Alicyclobacillus acidocaldarius. REFERENCE 1 AUTHORS Ash,C.A., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic relationships of thermoactinomyces and thermophilic spore-forming bacilli as revealed by comparative analysis of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62177|g506572 (bases 6 to 1420) NCIMB 11725 = ATCC 27009 = DSM 446 (T) geog_source= Nymph Creek, Yellowstone National Park biol_source= acid, hot water isolate_name= 104-1A NB: seq ending 197 removed; UCCCGUGUNUCUCCUNAAGGAGUAGGCANCGAAA BASE COUNT 302 a 315 c 432 g 225 t 3102 others ORIGIN 1 .......... .......... .......... .......... ....UU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC U......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGGG- UNA--UCU-N C-CUNU---N -AGAC-U-NG 421 -GAU-AU-NN N--------- ------NG-- G(-GAAA-)U -UGGN-N--C UAAG...... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CU(--N--CG --)GG-UUGU AAA--GCUN| UNUU-GC-UN 1021 --GG-GGA-- GA-GCGG-CA --UGG-GGA( G----UGGAA -----A---) GCCC-NN-UG 1081 ---------- -------C-G A-GA-CGGU- A-CCG-A-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) A-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UNAA-GGGU- GCG-UAG-GC -G|-GU-CG- 1261 A-GC-AAG|U CUG---GAGU G-AAA-GU-C CA-UGG-C(- UC-A)A-CCA -UG-G-GAU- 1321 -GGCU-CUGG A-AAC-UGCU A-GACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCUG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-AC-A-)- ---------- ---------- ---------- -------CAC -CCCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAG-AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCU--- CAC----CGG 1981 -UGC-A--(- GAGA-)-UGC -A-CCUU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--N| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUN- 2281 UG--UUAC-C AG-CGC---- ---------- ---------- ---G(---UU ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-GA-CU-C- A-CAG-GU-G A-CU-G-CCG --GC(-G--U AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CNAAG GGA-G-G-C- GA-AGC--(G 2881 -CGA)GGCG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-CUG- GUGGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.acica3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 43034. ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus acidocaldarius str. TDBrock 115-8 ATCC 43034. ORGANISM Alicyclobacillus acidocaldarius. REFERENCE 1 AUTHORS Wisotzkey,J.D., Jurtshuk,P., Fox,G.E., Deinhard,G. and Poralla,K. TITLE Comparative sequence Analyses on the 16s rRNA of Bacillus acidocaldarius Bacillus acidoterrestris and Bacillus cycloheptanicus: Proposal for the creation of a new Genus Alicyclobacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 42, 263-269 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43034 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60741 Former RDP Sids: B.acidoc34 ATCC 43034 = NRS 1665 geog_source= Yellowstone hotspring isolate_name= TDBrock 115-8 NB: former name Bacillus acidocaldarius BASE COUNT 346 a 357 c 504 g 235 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-G....... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- UAA--UCU-G C-CUUU---C -AGAC-C-GG 421 -AAU-AA-CG C--------- ------CC-- G(-GAAA-)C -GGGC-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-C CG-C--G-A- ---GGA-(-- --------GG 541 CA-------- -)-UCU---U CU-UG----C GG-GGAAA-- ---GGCCC-- ---------- 601 --(------- ---GAUU--- ---)------ ---------| --GGGC--C- A--CUG---- 661 ----AGAG-- AGG---A-|G CCNNN----- -NN|----NG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GC-UC 1021 --GG-GGA-- GA-GCGG-CA --UGG-GGA( G----UGGAA -----A---) GCCC-CA-UG 1081 ---------- -------C-G A-GA-CGGU- A-CCG-A-GU G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CG- 1261 A-GC-AAG|U CUG---GAGU G-AAA-GU-C CA-UGG-C(- UU-A)A-CCA -UG-G-GAU- 1321 -GGCU-CUGG A-AAC-UGCU U-GACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCUG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-AC-A-)- ---------- ---------- ---------- -------CAC -CCCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCU--- GAC----CGG 1981 -UGC-A--(- GAGA-)-UGC -A-CCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUG... 2221 .....(.... ...)...... .......... .GAG-C--GC AACCC-UU-G |-AC--CUG- 2281 UG--UUAC-C AG-CG----- ---------- ---------- ---C(---GA ---UAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-GA-CU-C- A-CAG-GU-G A-CU-G-CCG --GC(-G--U AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUGAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-A CCCAA-AAAG -CC-G-CUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCCC-- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.cychep 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus cycloheptanicus.. ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus cycloheptanicus. ORGANISM Alicyclobacillus cycloheptanicus. REFERENCE 1 AUTHORS Wisotzkey,J.D., Jurtshuk,P. and Fox,G.E. TITLE PCR Amplification of 16S rDNA from Lyophilized Cell Cultures Facilitates Studies in Molecular Systematics JOURNAL Curr. Microbiol. 21, 325-327 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X51928 Former RDP Sids: B.cyclohep legacy_attribute= be determined legacy_attribute= sequenced. Thus the first 28 and last 17 nucleotides could not legacy_attribute= used to PCR the rDNA which was subsequently cloned into M13 & legacy_attribute= Bacillus specific primers very near the 5' & 3 ends were NB: former name Bacillus cycloheptanicus BASE COUNT 351 a 366 c 519 g 253 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--UCU-G C-CCAA---C -UGAC-C-GG 421 -AAU-AA-CG C--------- ------CU-- G(-GAAA-)C -GGGU-G--C UAAUGCC-GG 481 AU-AGG---- ---------- -------C-A NC-G--A-G- ---CAG-(-- --------GC 541 AU-------- -)-CUG---- CU-CG----C UG-GGAAA-- ---GGUGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCAC--C- G--CAG---- 661 ----AUGG-- AGG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| AGUC-AC-UC 1021 --GG-GAA-- GA-GCGG-CA --AGG-GGA( G----UGGAA -----A---) GCCC-CU-UG 1081 ---------- -------A-G A-GA-CGGU- A-CCG-A-GA G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--NNAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GCGU- GCG-UAG-GC -G|-GU-UG- 1261 C-GU-GUG|U CCG---GGGU G-AAA-GU-C CA-GGG-C(- UC-A)A-CCC -UG-G-GAA- 1321 -UGCC-UUGG A-AAC-UGCG U-AACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCGCGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UG-CGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-UA-CC)- ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCU--- GAC----GAC 1981 -CGC-A--(- GAGA-)-UGC -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AA--CUG- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UG ---AAG--)G 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 G-NA-CU-C- A-CAG-UU-G A-CU-G-CCG --GC(-G--U AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG GGA-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CCCUG-AAAG -CC-G-UUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGGGC-C-A G-CC-GC-CG A-AGGU-GGG GUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sfb.tsoxid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sulfobacillus thermosulfidooxidans str. VKM B-1269. ACCESSION No information KEYWORDS No information. SOURCE Sulfobacillus thermosulfidooxidans str. VKM B-1269. ORGANISM Sulfobacillus thermosulfidooxidans. REFERENCE 1 AUTHORS Tourova,T.P., Poltoraus,A.B., Lebedeva,I.A., Tsaplina,I.A., Bogdanova,T.I. and Karavaiko,G.I. TITLE 16S ribosomal RNA sequence analysis and phylogenetic position of Sulfobacillus thermosulfidooxidans JOURNAL Syst. Appl. Microbiol. 17, 509-512 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z21979 isolate_name= VKM B-1269 BASE COUNT 373 a 367 c 525 g 254 t 2857 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UA-UC (--GA----- ---------- ---------- 241 --------AA -)GA-UA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- GAA--UCU-G C-CUAA---C -AGAC-C-GG 421 -AAU-AA-CG C--------- ------CU-- G(-GAAA-)C -GGGU-G--C UAAGGCC-GG 481 AU-ACG---- ---------- -------G-G CA-U--G-G- ---GGC-(-- --------CG 541 AU-------- -)-GCU---- G--AU----G CG-GGAAAG- ---GAUGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCAU--C- G--CUG---- 661 ----AGAG-- ------A-|C CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GC--UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| AGUC-AA-GG 1021 --GG-GAA-- GA-GCGG-CA --AGG-AGA( G-----GGAA -----U---) GCUC-UU-UG 1081 ---------- -------C-G A-GA-CGGU- A-CCC-C-GA G-AG--GAAG ---------C 1141 -CCCGGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCC -AC-UGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UC- 1261 U-GC-AAG|U CUG---GGGU G-AAA-GG-C CA-GGG-C(- UC-A)A-CCU -UG-G-GAA- 1321 -UGCC-UUGG A-AAC-UGUA G-GACUU-GA GUA-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U---GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(-AC-C-)- ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AUC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCU--- GAC----GAU 1981 -ACC-A--(- GAGA-)-UGG -U-AGG---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(CUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUG- 2281 UG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-C- A-CAG-GU-G A-CU-G-CCG --GC(-G--C AA)-GUC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUGAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-C-GG -CA--CAACG GGA-A-G-C- GA-GAG-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-C CCCUG-AAAA -CC-G-CUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -GAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sfb.dislfx 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sulfobacillus disulfidooxidans str. SD-11. ACCESSION No information KEYWORDS No information. SOURCE Sulfobacillus disulfidooxidans str. SD-11. ORGANISM Sulfobacillus disulfidooxidans. REFERENCE 1 AUTHORS Dufresne,S., Bousquet,J., Boissinot,M. and Guay,R. TITLE Sulfobacillus disulfidooxidans sp. nov., a new acidophilic, disulfide-oxidizing, gram-positive, spore-forming bacterium JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1056-1064 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34974|g1619910 isolate_name= SD-11 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 362 a 368 c 518 g 248 t 2880 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UA----- ---------- ---------- 241 --------CG -)GG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- CAA--UCU-G C-CCAU---U -GGAC-U-GG 421 -AAU-AA-CG C--------- ------CU-- G(-GAAA-)C -GGGU-G--C UAAGGCC-AG 481 AU-AGA---- ---------- -------C-A CA-G--A-A- ---GAG-(-- --------GC 541 CU-------- -)-CUC---U -U-GU----G UG-GGAAA-- ---GAUGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCAU--C- G--CCA---- 661 ----GUGG-- AGG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 A-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUU| AGUC-AC-UC 1021 --GG-GAA-- GA-GCGG-GU --GGG-AGA( G-----GGAA -----U---) GCUC-CC-AC 1081 ---------- -------C-G A-GA-CGGU- A-CCG-G-GA G-AG--GAAG ---------C 1141 -CCCGGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-GU- 1261 U-GU-GGG|U CUG---AGGU G-AAA-GG-U CG-GGG-C(- UC-A)A-CCC -UG-A-GAA- 1321 -UGCC-UUGG A-AAC-UGCA A-GACUU-GA GUG-----CU G-GA-GAGGC AAG-G|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCAG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCA--- GAC----GGG 1981 -UGU-A--(- GAGA-)-UAC -A-CCGU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| UGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CGG- 2281 UG--UUAC-C AG-CGC---- ---------- ---------- ----(---GU ---AAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGCG|G 2701 G-GA-CU-C- A-CCG-GU-G A-CU-G-CCG --UC(-G--U AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-C-GG -CA--CAACG GGA-C-G-C- GA-GAG-A(G 2881 -CAA)UCUG- ---------- GA-GCCAA-C CCCUG-AAAA -CC-G-CUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -GUAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGG-GC-C-A G-CC-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.tusciae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus tusciae. ACCESSION No information KEYWORDS No information. SOURCE Bacillus tusciae. ORGANISM Bacillus tusciae. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26933|g511107 BASE COUNT 326 a 380 c 547 g 234 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-UC-- UGNC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------UC UCCCC-G-GG (--CU----- ---------- ---------- 241 --------UG -)CC-CCGGG GAGA------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUGGG- CAA--CCU-G U-CCGA---C -AGAC-C-GG 421 -GAC-AA-CG C--------- ------CU-- G(-GAAA-)C -GGGC-G--C UAAUUCC-GG 481 AU-AGG---- ---------- -------C-G CC-A--G-G- ---GGC-(-- --------GC 541 AU-------- -)-GCU---- CU-UG----G CG-GGAAA-- ---GGG---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----CC--C- G--CUG---- 661 ----UCGG-- GUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A C-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCUC| UGGC-UU-UG 1021 --GG-GAC-- GA-G-GG-CA --CCG-GG-( ------GGGA ---------) -CCC-GG-UG 1081 ---------- -------A-G G-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CCCGGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUCA -CU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GC-GA- 1261 U-GC-ACG|U CCG---AGGU G-AAA-GG-C AG-CGG-C(- UC-A)A-CCG -CU-G-AGG- 1321 -GGCC-ACGG A-UAC-GGCA U-NGCUU-GA GGG-----UC G-GA-GAGGC AAG-G|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-NGGAGG- AAUA-CCGG- 1441 -U-G-UC(-G AA-G)GCGC- -CUUGCUG-- ---------- ---------- ---------G 1501 ACG--AC-GC CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-GGG -UG-GG---- ---------- 1681 -(GAU-GA)- ---------- ---------- ---------- -------CCC -AUCCG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG AGA-UC|--- ---------C ---CUCU--- GAC----ACC 1981 -UUC-A--(- GAGA-)-UGG -G-GGUU--- ---------- --CCC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGG------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--CUG- 2281 UG--UUGC-C AG-CAC---- ---------- ---------- ----(---GC ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- A-CAG-GG-G A-CU-G-CCG --GC(-GA-G GA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CAUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG GGG-G-G-C- GA-AGG-G(G 2881 -CGA)CCUG- ---------- GA-GCGAA-U CCCUG-AAAG -CC-G-UUC- GUAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GC -AA-CC---- ---------- ---------- -----(---- -GGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGC-C-A G-CC-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGNG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS sym.Daphsp 4376 bp RNA RNA 02-JUL-1998 DEFINITION symbiont of. ACCESSION No information KEYWORDS No information. SOURCE symbiont of. ORGANISM symbiont of. REFERENCE 1 AUTHORS Embley,T.M. JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U34688|g1173620 symbiont_of= Daphnia sp. BASE COUNT 345 a 336 c 481 g 271 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAN-GC-- UGGC-GGC-G -UGC-CU--A CUAC-AUGCA A-GUC-GAGC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CA (--UU----- ---------- ---------- 241 --------UA -)UG-AG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGG---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCAA---A -AGAC-G-GG 421 -GAU-CA-CC C--------- ------UU-- G(-GAAA-)C -GAGG-G--U CAAUACC-GG 481 AU-AAGC--- ---------- -------C-U CU-U--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GGC---- UA-GA----G AG-GGAAA-- ---GGUGC-- ---------- 601 --(------- ----UUU--- ---)------ ---------| --GCAC--U- G--UUU---- 661 ----UUGG-- AAG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- CGA------- -----UG-CG 781 U-AA-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-U|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAC--G-G CC(--UU-UG --)GG-UUGU AAA--GCUC| UGUC-CA-UC 1021 --GG-GAA-- GA-AG----- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-UG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUAA -UU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GG-CU- 1261 U-AU-CAG|U CGG---GCGU G-AAA-GG-C AU-AGG-C(- UC-A)A-CCU -GU-G-UAA- 1321 -GCGU-CCGA A-ACA-GUAG G-UCUUU-GA GUG-----UA G-UA-GAGGG AAG-C|GGAA 1381 UU-UCUGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-AGAAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUG AG-G------ -------CG- C-GAAG-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CG-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGG -GA-UG---- ---------- 1681 -(-CU-AA)G ---------- ---------- ---------- -------CAU -CUUUG-UGC 1741 CG--AA---- --GG-(AAA- ---C)C-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AA----CAG 1981 -GUC-U--(- GAGA-)-AGA -U-CUGG--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGY-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUCA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUC- 2281 GG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-U- U-GGA-GA-A A-CA-G--CG --GC(-GA-- AA)-GCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GU -UA--CAGAG GGA-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CUCAG-AAAA -GC-G-GUC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGU-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-GGG- UC-AU-ACCC -GAA-G-UCG 3121 G-UGA-G-GG -AA-CCCGG- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------CC GGGACC-C-A G-CU-GC-CG A-AGGU-AGG GCU-CG-CG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ALV 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ALV. str. ALV. ACCESSION No information KEYWORDS No information. SOURCE str. ALV. str. ALV. ORGANISM str. ALV. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M80290 (bases 1 to 1029) geog_source= New Mexico isolate_name= ALV NB: IDENT:unplaced eubacterium BASE COUNT 298 a 375 c 541 g 233 t 2929 others ORIGIN 1 .......... .......... .......... ....CUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-GU--A AUAC-AUGCA A-GUC-GAGC 121 G--GU----- -----CGANG G--------- ---------- ---------- ---------- 181 ---------- ---------- --------CU (--CU----- ---------- ---------- 241 --------CA -)GC------ ---------- ---------- ---------- ---------- 301 ---------- ---------- --------GG NGGAGG---- ---|------ GGUG-AGGA- 361 -A-CA-CG-U GAGU---AAC -AC-GUGAG- UAA--CCG-G G-CGUC---G -GGUW-G-GG 421 -GAU-AA-UG G--------- ------GC-- C(-GAAA-)G -GCGC-G--G UAAUCCC-GA 481 AU--GG---- ---------- -------C-C CC-G--G-GG ---GNG-(-- --------CC 541 AG-------- -)-CC----G CC-GG----G GG--GAAA-- ---GGC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ---GGU--A- G--CCG---- 661 ----GACG-- GGG---G-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAG-GG) -C-CUCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UG-UN 1021 --GG-GAN-- GA-GGAN-NG --UNC-NGN( G----UGGGG -----N---) N--------- 1081 ---------- ---------- ---A-CGGU- A-CCG-G-CG G-AG--GAAG ---------C 1141 -CCCUGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UG- 1261 C-GC-AUG|U AGC---GGUU U-UCA-GC-G UC--GG--(- NN-N)A-CCC -GA-C-GGA- 1321 -GGGC-GGCU A-AAC-GGCG C-AGCUM-NA GGG-----CA G-GA-GAGGU GCA-U|GGAA 1381 UU-CCUKGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -UNCACUG-- ---------- ---------- ---------G 1501 CCU--NG-CC CUGACG-CUK AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UG-CG-- -------A|G -GU-GU-CGC -GG-GGG--- ---------- 1681 -(GUU-CC)- ---------- ---------- -A-------- -------CCU -UGCGG-UGC 1741 CG--GA---- --SS-(UAA- ---C)G-CA- CUCA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-GC-UAG ACG-GG|A-- ---------G ---CCGU--- -GA------- 1981 -GSG-C--(- GAAA-)-GCG -C-GGGG--- C--------- --UGC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GCA------- ----GA---| GCG-GU-CGU |---C|R--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-UC--GGC- 2281 UG--UUGC-C AG-CGA---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|G 2701 G-CA-CU-C- A-GCC-GA-G A-CA-G-CCG --GG(-GA-C GA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUCAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-CC -GA--CAACG GGC-C-G-C- GA-CCU-C(G 2881 -CGA)KGGG- ---------- GA-GCGAA-U CCUUC-AAAC -GG-C-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CC-AC-ACCC -GAA-G-CCG 3121 G-UCG-GUCG -AA-CCCC-- ---------- ---------- -----(---- -GUCA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGACG-A-C C-CC-GU-RG A-CGGU-GGG GCG-GA-UG- AUN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.cOS77 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone cOS77.. ACCESSION No information KEYWORDS No information. SOURCE clone cOS77. ORGANISM clone cOS77. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Molecular analysis of a natural acidic environment reveals a cultural bacterial diversity JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86775|g870920 BASE COUNT 304 a 381 c 523 g 228 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -AAAC-NC-- UGGC-GGC-G -UGC-GU--A AUAC-AUNCA A-GUC-GANC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGCGN CGGANG---- ---|------ GGUG-AGGA- 361 -A-CA-CG-U GAGU------ ---------- -GA--UCG-A A-CGAG---G -AGUG-G-GG 421 -GAU-AU-CG G--------- ------UC-- C(-GAAA-)G -GCGC-G--G CAAUCCC-GC 481 AU-ACG---- ---------- -------U-U CC-G------ -----G-(-- --------GA 541 GA-------- -)-C------ ---CG----G AA--GAAA-- ---GCCGG-- ---------- 601 --(------- ---GGAA--- ---)------ ---------| --CUGG--C- G--CUC---- 661 ----CUUG-- GGG---A-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAG-GG) -C-CUCCC-A A|-GNC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-NCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UG-UC 1021 --GG-GAC-- GA-AGAC-CG --ACC-CGG( -----GAGGG ---------) CCGG-GG-AG 1081 ---------- ---------- ---C-CGGU- A-CCG-G-CG G-AG--GAAG ---------C 1141 -CCCUGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GUG-UAG-AC -G|-GU-GC- 1261 G-AU-ACG|U AGC---GGUU U-UAA-GCCU CC-G-G--(- CU-C)A-CCC -GG-A-GGA- 1321 -GGGC-GGCU A-AAU-GGUC G-GACUG-GA GGG-----CA G-GA-GAGGU GCG-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCACUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -CC-GG---- ---------- 1681 -(GUC-CA)- ---------- ---------- ---------- -------CCG -GGCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- CUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UGG ACA--C|G-- ---------G ---UCGU--- -GA----GCG 1981 -CCG-C--(- GAAA-)-GCG -G-CGGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| GCG-AU-CG- |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- A-CAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUGAU-G-UU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-U-CC -GA--CAAUG GGC-G-G-C- GA-CGG-C(G 2881 -CGA)GCCG- ---------- CA-GCGAA-U CCCUC-AAAC -GG-A-UCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-CCA-(UC -AGC-AC)-G GNG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CC-AC-ACCC -GAA-G-CCG 3121 G-GUG-AUCC -AA-CCGCCC ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -------GGG CGGAGG-G-U C-CC-GU-CG A-CGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A70 4376 bp RNA RNA 02-JUL-1998 DEFINITION gram neg,. ACCESSION No information KEYWORDS No information. SOURCE gram neg,. ORGANISM gram neg,. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE The biotechnological importance of molecular diversity studies for metal bioleaching JOURNAL (in) Priest,F.G., Ramos-Cormenzana,A. and Tindall,B.J. (Eds.); BACTERIAL DIVERSITY AND SYSTEMATICS (FEBS SYMPOSIUM NO. 75): 259-273; Plenum Press, New York (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72853|g899255 library_source= gram neg, iron oxidizing, related to isolates BC and ALV BASE COUNT 313 a 391 c 536 g 238 t 2898 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -AAAC-GC-- UGGC-GGC-G -UGC-GU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGCGG CGGACG---- ---|------ GGUG-AGGA- 361 -A-CA-CG-U GAGU------ ---------- -GA--UCG-A G-CGAG---G -AGUG-G-GG 421 -GAU-AU-CG G--------- ------GC-- C(-GAAA-)G -GCGC-G--G CAAUCCC-GC 481 AU-ACG---- ---------- -------U-U CC-G------ -----G-(-- --------GG 541 AA-------- -)-C------ ---CG----G AA--GAAA-- ---GCCGG-- ---------- 601 --(------- ---GGAA--- ---)------ ---------| --CUGG--C- G--CUC---- 661 ----CUUG-- GGG---A-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAU-GG) -C-CUCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UG-UC 1021 --GG-GAC-- GA-AGAC-CG --NCC-CGG( -----AAGGG ---------) CCGG-GG-AG 1081 ---------- ---------- ---C-CGGU- A-CCG-G-CG G-AG--GAAG ---------C 1141 -CCCUGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-GC- 1261 G-AU-ACG|U AGC---GGUU U-UAA-GCCU CC-GNG--(- CU-C)A-CCC -GG-A-GGA- 1321 -GGGC-GGCU A-AAC-GGUC G-GACUG-GA GGG-----CA G-GA-GAGGU GCG-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCACUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -CC-GG---- ---------- 1681 -(GUC-CA)- ---------- ---------- ---------- -------CCG -GGCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- CUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UGG ACA--C|G-- ---------C ---UCGU--- -GA----GCG 1981 -CCG-C--(- GAAA-)-GCG -G-CGGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| GCG-AU-CG- |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- A-CAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUGAU-G-UU -CU--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGG-U-CC -GA--CAAUG GGC-G-G-C- GA-CGG-C(G 2881 -CGA)GCCG- ---------- CA-GCGAA-U CCCNC-AAAC -GG-A-UCC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-CCA-(UC -AGC-AC)-G GGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- NUC-ACA--- --CCA-CGAG A--GU-UGN- CC-AC-ACCC -GAA-N-CCG 3121 G-GUG-AUCC -AA-CC-CCC ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 -------GGG CGGAGG-G-U C-CC-GU-CG A-CGGU-GGG GUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sfb.tsoxi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sulfobacillus thermosulfidooxidans.. ACCESSION No information KEYWORDS No information. SOURCE Sulfobacillus thermosulfidooxidans. ORGANISM Sulfobacillus thermosulfidooxidans. REFERENCE 1 AUTHORS Durand,P. TITLE True primary structure of the 16S rRNA coding gene of Sulfobacillus thermosulfidooxidans by direct sequencing of PCR amplified gene JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91080|g995744 BASE COUNT 306 a 385 c 520 g 227 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-GU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----AGCGG CGGACG---- ---|------ GGUG-AGGA- 361 -A-CA-CG-U GAGU------ ---------- -GA--UCG-G G-CUGU---G -AGUG-G-GG 421 -GAU-AU-CG G--------- ------GC-- C(-GAAA-)G -GCGC-G--G CAAUCCC-GC 481 AU-ACG---- ---------- -------U-U CC-G------ -----G-(-- --------GG 541 AA-------- -)-C------ ---CG----G AA--GAAA-- ---GCUUG-- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --CAGG--C- G--CUC---- 661 ----ACAG-- GGG---A-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAU-GG) -C-CUCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UG-UC 1021 --GG-GAC-- GA-AGAC-CG --GCC-CGG( -----AAGGG ---------) CCGG-GG-AG 1081 ---------- ---------- ---C-CGGU- A-CCG-A-CG G-AG--GAAG ---------C 1141 -CCCUGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-GC- 1261 G-AU-ACG|U AGC---GGUU U-UAA-GCCU CC-G-G--(- CU-C)A-CCC -GG-A-GGA- 1321 -GGGC-GGCU A-AAC-GGUC G-CGCUA-GA GGG-----CA G-GA-GAGGU GCG-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -UGCACUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CCG -CC-GG---- ---------- 1681 -(GUC-CA)- ---------- ---------- ---------- -------CCG -GGCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- CUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UGG ACA--C|G-- ---------C ---UCGU--- -GA----GCG 1981 -CCG-C--(- GAAA-)-GCG -G-CGGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| GCG-AG-CG- |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- A-CAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUGAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-CC -GA--CAACG GGA-U-G-C- GA-CGG-C(G 2881 -CGA)GCCG- ---------- GA-GCCAA-U CCUUC-AAAC -GG-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-CCA-(UC -AGC-AU)-G GGG-CGGUG- AAUUC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CGG- CC-AC-ACCC -GAA-G-CCG 3121 G-GCG-AUCC -AA-CCGC-- ---------- ---------- -----(---- -AGAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G CGGAGG-G-U C-CC-GU-CG A-CGGU-GGG GUC-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.BC 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. BC. str. BC. ACCESSION No information KEYWORDS No information. SOURCE str. BC. str. BC. ORGANISM str. BC. REFERENCE 1 AUTHORS Lane,D.J., Harrison,A.P., Stahl,D.A., Pace,B., Giovannoni,S.J., Olsen,G.J. and Pace,N.R. TITLE Evolutionary relationships among sulfur- and iron-oxidizing eubacteria JOURNAL J. Bacteriol. 174, 269-278 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M79382 (bases 1 to 338) isolate_name= BC BASE COUNT 185 a 209 c 296 g 146 t 3540 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......G-- GGG---A-|G CUCGC----- -GG|----CC N--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAU-GG) -C-CUCCN-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|N-RC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -RGR-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UDA UGGA|-GCAA CGCN-NN-NU 961 G-A-GU-G-A A-GAC--G-G CN(--UU-KG --)GG-UUGU AAA--GCUN| UGUC-UD-UN 1021 --GG-GAC-- GA-A-GA-GC .........( .......... ......---) ......A-GG 1081 ---------- -------A-A A-GC-CARU- A-CCG-A-NG G-AG--GAAG ---------C 1141 -CNNNNCA-A ACUA.....( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .GGGC-GGCU W-AAC-GGUC N-YKCUA-GA GGG-----CA G-GA-GAGGU GCG-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCCG- 1441 -U-G-GC(-K AA-G)GCGG- -CGCACUG-- ---------- ---------- ---------G 1501 CCU--KG-CC CUKACG-CUK AG-G------ -------CG- C-KACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -CG-GG---- ---------- 1681 -(-UC-CA)- ---------- ---------- ---------- -------CCG -GGCGG-UGC 1741 CA--GA---- --SS-(UAA- ---C)G-CA- CUAA-GURCC C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUG- 2281 UG--UUGC-C AG-CKG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CD-CU-C- A-CAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUGAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-CC -GA--CAACG GGA-U-G-C- GA-CGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGAA-U CCUUC-ARAC -GG-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- R)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-CNA-(UC -AGN-AU)-G GGG-CGGUA- AAUUC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sfb.spCMT1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sulfobacillus sp. str. C-MT1. ACCESSION No information KEYWORDS No information. SOURCE Sulfobacillus sp. str. C-MT1. ORGANISM Sulfobacillus sp. REFERENCE 1 AUTHORS Goebel,B.M. and Stackebrandt,E. TITLE Cultural and phylogenetic analysis of mixed microbial populations found in natural and commercial bioleaching environments JOURNAL Appl. Environ. Microbiol. 60, 1614-1621 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75270|g496522 biol_source= continuous bioreactor isolate_name= C-MT1 BASE COUNT 276 a 334 c 465 g 203 t 3098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-.UGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UCAGCGG CGGACG---- ---|------ GGUG-AGGA- 361 -A-CA-CG-U GAGU...... .........- .GA--UCG-G G-CUGU---G -AGUG-G-GG 421 -GAU-AU-CG G--------- ------GC-- C(-GAAA-)G -GCGC-G--G CAAUCCC-GC 481 AU-ACG---- ---------- -------U-U C--------- ---CGG-(-- --------GG 541 AA-------- -)-CCG---- ---------G AA--GAAA-- ---GCUUG-- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --CAGG--C- G--CUC---- 661 ----ACAG-- GGG---A-|G CUCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-GG-GG-( GU-AAU-GG) -C-CUCCC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UG-UC 1021 --GG-GAC-- GA-A-GA-CC --GNC-CC-( -----GGAA- ---------) -GGG-CC-GG 1081 ---------- -------G-G A-GC-CGGU- A-CCG-G-CG G-AG--GAAG ---------C 1141 -CCCUGCA-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GUG-UAG-GC -G|-GU-GC- 1261 G-AU-ACG|U AGC---GGUU U-UAA-GC-C UC-CGN-G(- CU-C)A-CCC -GG-A-GGA- 1321 -GGGC-GGCU A-AAC-GGUC G-CGCUA-GA GGG-----CA G-GA-GAGGU GCG-U|GGAA 1381 UU-CCUGGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAAG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CGCACUG-- ---------- ---------- ---------G 1501 CCU--GG-CC CUGACG-CUG AG-G------ -------CG- C-GACA-GC- GU-GGG-GA- 1561 GC-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGC -CC-GG---- ---------- 1681 -(GUC-CA)- ---------- ---------- ---------- -------CCG -GGCGG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- CUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGCAGA 1921 A-CCUUA-CC AGG-AC-UGG ACA-CG|--- --------CU ---CGUG--- --A----GCG 1981 -CCG-C--(- GAAA-)-GCG -G-CGGG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| AGC-GA-GCG |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUG- 2281 UG--UUGC-C AG-CGG---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- A-CAC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CG CAU-G-GC-C UUGAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-CC -GA--CAACG GGA-U-G-C- GA-CGG-C(G 2881 -CGA)GCCG- ---------- GA-GCCAA-U CCUUC-AAAC -GG-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-CCA-(UC -AGC-A.).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.2 PARAPHYLETIC_BACILLI. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.2 PARAPHYLETIC_BACILLI. ORGANISM 2.16.8.2 PARAPHYLETIC_BACILLI. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.schlegel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus schlegelii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus schlegelii. ORGANISM Bacillus schlegelii. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26934|g511103 BASE COUNT 301 a 361 c 523 g 233 t 2958 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 NCUCAG-GAC -GAAC-GC-- UGNC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G AG---GCGGG CGGAA----- ---------- ---------- ---------- 181 ---------- ---------- ------N-CC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GGAA ANCCGU---- CUC|-UU--- AUCG-GCGG- 361 -A-CG-GG-U GAGG---AAC -AC-GUAGG- CAA--CCU-G U-CCUA---A -AGAC-C-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GG 481 AU-AGA---- ---------- -------U-U GU-C--C-U- ---GGC-(-- --------GC 541 AU-------- -)-GCU---- GG-GC----C AA-GGAAA-- ---GGGGCG- ---------- 601 --(------- ---ACC---- ---)------ ---------| -CGCUU--U- A......... 661 ......GG-- AGG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGGA|-GCGA CNCC-GC-GU 961 G-G-GG-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CCNC| UGUU-GU-CG 1021 --GG-GAA-- GA-AGGG-CC --GC-----( -----GGAG- ---------) -----GC-GG 1081 ---------- -------C-A UUGA-CGGU- A-CCC-G-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A AGUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUGA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---CUGU G-AAA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-GGG- 1321 -UGCA-GCGG A-AAC-UGGC G-GACUU-GA GUG-----CA G-GA-GAGGU GCG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCGN- 1441 -U-G-UC(-G AA-G)GCAC- -CGCACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G AC----CAC- G-CU-NU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -NU-GU-GGG -UG-GUA--- ---------- 1681 -(-UC-C.). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .........A UUGACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCU--- GCC----GGG 1981 -UCC-A--(- GAGA-)-UGG -G-CC-U--- UU-------- --CCC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGG------- ----AC---| GGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-C-CCG --CC(-GA-C GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGCG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-U CCCUG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGG-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- GG-GC-GCCC -GAA-G-GCG 3121 C-GGN..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......C-A G--C-GC-UG A-AGGC-GAA CCU-GG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GNNC C(GGA-A)GG UGNGGN--UG GAUC...... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.valid4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus validus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus validus. ORGANISM Paenibacillus validus. REFERENCE 1 AUTHORS Ash,C.A., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic relationships of thermoactinomyces and thermophilic spore-forming bacilli as revealed by comparative analysis of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M77489|g1209247 BASE COUNT 333 a 351 c 457 g 260 t 2975 others ORIGIN 1 .......... .......... .......... .......... GNUAGU(UUG A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GGAGACU CAUCUUCGGG AUGAGGAUC- ---------- ---------- ---------- 181 ---------- ---------- ---------- (--------- ---------- ---------- 241 ---------- -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--C--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGG-- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GN 481 AU-ANG---- ---------- -------U-C UU-U--U-C- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- GA-AA----A GG-GGAAA-- ---GGCGGCU UC-------- 601 --(------- ---------- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GN-GU 961 G-A-GUGAGG ACGG------ -C(--UU-CG --)GG-UUGU AAA--ACUC| UGUUCUU-GA 1021 --GGAAGAAU UCCUUCCAGG CGAACAGCC( UGGAAGGU-- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-AG G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGCG-G-- 1201 CAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UG- 1261 A-UU-AAG|U CAG---GUGU G-AAA-GG-C UG-CGG-C(- UC-A)A-CCA GAGCGGCACC 1321 U--------G A-AAC-UGGU C-AGCUU-GA GUG-----CA G-GA-GAGGG GAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAAN--- -U-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GGCUAC GC-------- 1681 -(CUC-AG)U GCCGAAGUAA CCCAU----- ---------- ---------- ---------- 1741 ---------- -----(---- ----)----- -UAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---N-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---C-CU--- -AC----CCC 1981 -UCC-A--(- GAGA-)-UUG -A-C-GU--- UU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GA--C| A-ACUGUA-A |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-N |-UC--NUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---CNG--)A 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CN-G-CCG --GU(GAAAG C-)---C-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG GGC-A-G-C- GA-ACG-C(G 2881 -CGA)GGCG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CNC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-ANNNNN. .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.3 PAE.POLYMYXA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.3 PAE.POLYMYXA_GROUP. ORGANISM 2.16.8.3 PAE.POLYMYXA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.valid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus validus str. Q1 ATCC 29948 (T). ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus validus str. Q1 ATCC 29948 (T). ORGANISM Paenibacillus validus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29948 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60617 Former RDP Sids: B.gordonae ATCC 29948 (T) = NCIMB 12553 = DSM 5395 isolate_name= Q1 NB: former name Bacillus gordonae BASE COUNT 332 a 330 c 441 g 276 t 2997 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUUNU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUNGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAU-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAGACC-GG 481 AU-AGC---- ---------- -------U-G GU-U--U-C- ---UCC-(-- --------GC 541 AU-------- -)-GGG---- GG-AA----U CA-UGAAA-- ---CACGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGU--G- G--CUU---- 661 ----ACGG-- AUG---N-|N --UNC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACN-N A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-NG| -A-CCU--(G -ANA)-GGGU ----NA-N-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CGCNAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GC-CN 1021 --AG-GAA-- GA-ACGC-CU --CGG-AGA( G----UNAC- -----U---) GCUC-UG-AG 1081 ---------- -------G-G U-GA-CGGU- N-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 N-UU-AAG|U UUG---GUGU U-UAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGA A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CNN 1981 -UNC-A--(- GAGA-)-UNU -A-CCUU--- C--------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-N C-U---CG-U |GU-C(-GUG A)-GAUGU-N 2221 GG-N-(UUAA -GU)-CCCGC AA-------- CGNG-C--GC AACCC-UU-G |-NN--CUU- 2281 AN--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCGAA-U CCUUA-GAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.validu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus validus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus validus. ORGANISM Paenibacillus validus. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78320|g1089786 BASE COUNT 344 a 322 c 449 g 280 t 2981 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUUAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAU-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAGACC-GG 481 AU-AGC---- ---------- -------U-G GU-U--U-C- ---UCC-(-- --------GC 541 AU-------- -)-GGG---- GG-AA----U CA-UGAAA-- ---CAUGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUAU--G- G--CUU---- 661 ----ACGG-- AUG---G-|N CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-NG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- A-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GN-CA 1021 --AG-GAA-- GA-ACGC-CU --CGG-AGA( G----UAAC- -----U---) GCUC-UG-AG 1081 ---------- -------G-G U-GA-CGGU- A-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUNGU CC-NNAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U UUG---GUGU U-UAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGA A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UAC-A--(- GAGA-)-UGU -A-CCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UN--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NAG-UU-G G-CU-N-CCN --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAN-G-CC-C CUUAU-G-AC -CU--GGGN- 2821 U-ACA-CA-N GUN--CUACA AUGGG-C-GG -UA--CAACG GGA-A-G-N- GA-AGU-C(G 2881 -NGA)GAUG- ---------- GA-GCGAA-U CCUUA-GAAG -NC-G-GUC- UCAGUUCGGN 2941 U-UGGAGGC- (UGCAAC-U- C)-GNCUGCA -UGAAGU-CG -GAAU-UGU- -UAGUA-AUC 3001 GN-GGA-(UC -ANN-AU)-G CCG-GGGNG- AAUAC-GNU- CCC-GGN-UC UUGUN----C 3061 ACANCCCCC- CUC-ACA--- --NCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.valid3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus validus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus validus. ORGANISM Paenibacillus validus. REFERENCE 1 AUTHORS Ash,C., Priest,F.G. and Collins,M.D. TITLE Molecular identification of rRNA group 3 bacilli (Ash, Farrow, Wallbanks and Collins) using a PCR probe test. Proposal for the creation of a new genus Paenibacillus JOURNAL Ant. van Leeuw. 64, 253-260 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S73541|g688184 Former RDP Sids: B.validus DSM 3937 (T) = NRRL NRS-1000 NB: former name Bacillus validus BASE COUNT 365 a 344 c 478 g 292 t 2897 others ORIGIN 1 .......... .......... .......... .....ANUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUUAU-C- (--UU----- ---------- ---------- 241 --------CG -)GG-AUAGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAU-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAGACC-GG 481 AU-AGC---- ---------- -------U-G GU-U--U-C- ---UCC-(-- --------GC 541 AU-------- -)-GGG---G GGGAA----U CA-UGAAA-- ---CAUGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUNU--G- G--CUU---- 661 ----ACGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --AG-GAA-- GA-ACGC-CU --CGG-AGA( G----UAAC- -----U---) GCUC-UG-AG 1081 ---------- -------G-G U-GA-CGGU- A-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U UUG---GUGU U-UAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGA A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UAC-A--(- GAGA-)-UGU -A-CCNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AA--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCGAA-U CCUUA-GAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG NUA-GA-UG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.viscosus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus viscosus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus viscosus. ORGANISM Bacillus viscosus. REFERENCE 1 AUTHORS Lafay,B., Pichinoty,F. and Christen,R. TITLE Phylogenetic analysis of some Bacillus specific based on comparison of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77792|g456618 BASE COUNT 361 a 345 c 466 g 271 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 A--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CUCUG-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGGAG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAGACC-GG 481 AU-AAG---- ---------- -------U-G GU-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-GA----U CA-AGAAA-- ---CACGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGU--G- G--CUU---- 661 ----ACAG-- AUG---C-|G CGUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CG --CGG-AGA( G----UAAC- -----U---) GCUC-UG-CG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CG- 1261 C-UU-AAG|U CUG---GUGU U-UAA-GC-C ---GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG C-GGCUU-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UAU 1981 -CCU-A--(- GAGA-)-UAG -G-AUAG--- G--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AA--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCUAAGAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.aligin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus aliginolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus aliginolyticus. ORGANISM Paenibacillus aliginolyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78465|g2073369 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 360 a 328 c 439 g 290 t 2959 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUUAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUAAG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-ACGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UNA--NCU-G C-CUAU---A -AGAU-C-GG 421 -GAU-AA-CU A--------- ------UCN- G(-GAAA-)C -GAUA-G--C UAAGACC-GG 481 AU-AAU---- ---------- -------U-G GU-U--U-N- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----C UA-UGAAA-- ---CACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--G- G--CUU---- 661 ----AUAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA N)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UC-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CC 1021 --UA-GAC-- GA-AUAG-CA --AGG-AGA( G----UAAC- -----U---) GCUC-UU-UG 1081 ---------- -------U-G U-GA-CGGU- A-UAG-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUNGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 A-UU-AAG|U UGG---GUGU U-UAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UCCA A-AAC-UGGU U-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- --------UC -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- GUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---GGGUG-- -UA----AGC 1981 -ACU-A--(- GAGA-)-UAG -U-GCCC--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| ACC-CA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUUA-UAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUU----C 3061 ACACCGCCC- GNC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.chndro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus chondroitinus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus chondroitinus. ORGANISM Paenibacillus chondroitinus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D82064|g2077919 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 354 a 329 c 442 g 285 t 2966 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------UC-- G(-GAAA-)C -GAUA-G--C UAAGACC-GG 481 AU-AAC---- ---------- -------U-G GU-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-GA----U CA-UGAAA-- ---CACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--G- G--CUU---- 661 ----AUAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-NCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CC 1021 --UA-GAC-- GA-AUAG-CA --GCA-GGA( G----UAAC- -----U---) GCCU-GU-UG 1081 ---------- -------U-G U-GA-CGGU- A-UAG-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUNGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UA- 1261 A-NU-AAG|U UGG---GUGU U-UAA-GC-C CG-GGG-N(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UCCA A-AAC-UGGU U-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC A--UA-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- --------UC -CUCGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- GUAA-GUAUG C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------N ---CNCUG-- -UA----UCN 1981 -CCU-A--(- GAGA-)-UAG -G-GUCC--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AG-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAG-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-G UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUUA-UAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.larvae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus larvae subsp. larvae ATCC 9545 (T). ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus larvae subsp. larvae ATCC 9545 (T). ORGANISM Paenibacillus larvae. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60619 Former RDP Sids: B.larvae ATCC 9545 (T) = NRRL B-2605 NB: former name Bacillus larvae BASE COUNT 354 a 338 c 449 g 285 t 2950 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C CU---U---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGACG C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- AGG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU U--------- ------GC-- G(-GAAA-)C -GUGA-G--C UAAUACC-GG 481 AU-AGC---- ---------- -------U-G GU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----U AU-UGAAA-- ---GACGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|- CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 NG-UG-AG-( GU-NAC-GG) -C-UNACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(N -AGA)-GGGU ----NA-A-- CGG-C|C-NC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --AG-GAA-- GA-ACGG-CC --AGG-GGA( G----UAAC- -----U---) GCCC-CU-GG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---GUGU U-UAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG A-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- GUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UUU-U--(- GAGA-)-UAG -A-CCUU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---CA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAACG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCCAA-U CCUCA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.larva2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus larvae subsp. pulvifaciens NCDO 1141. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus larvae subsp. pulvifaciens NCDO 1141. ORGANISM Paenibacillus larvae. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60636 Former RDP Sids: B.pulvifac NB: former name Bacillus pulvifaciens BASE COUNT 349 a 335 c 437 g 271 t 2984 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-NUGCN A-GUC-GAGC 121 G--GA----C CU---N---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUNUNN-NC (--UU----- ---------- ---------- 241 --------CG -)GG-AGACG C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- AGG|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---NAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU N--------- ------GC-- G(-GAAA-)C -GUNA-G--C UAAUACC-GG 481 AU-AGC---- ---------- -------U-N GU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----U CA-UGAAA-- ---GACGGG- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -CCUNU--C- A--CUU---- 661 ----ACAG-- AUG---N-|N --UNC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --AG-GAA-- GA-ACGG-CC --AGG-GGA( G----UNAC- -----U---) GCCC-NU-NG 1081 ---------- -------A-G U-GA-CGGU- N-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 N-UU-AAG|U CUN---GUGU N-NAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG A-GACUU-GA GUG-----NA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(NUC-GA)U ---------- ---------- ---------- -------ACC -CUUNG-UGC 1741 CG--AA---- --GU-(NAA- ---C)A-CA- GUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CUCUN-- -AC----CGG 1981 -UNU-A--(- GAGA-)-UAG -A-CCUN--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---CA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--NGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GG -UA--CAACG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCCG- ---------- GA-GCCAA-U CCUCA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.thiamn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus thiaminolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus thiaminolyticus. ORGANISM Paenibacillus thiaminolyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78475|g2077917 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 356 a 329 c 446 g 282 t 2963 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----G C----AAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AUUA---- -GC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAU -AC-GUAGG- UAA--CCU-G C-CCUU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------AC-- G(-GAAA-)C -GUGG-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------C-G AU-U--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-AA----U CG-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGC--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCUAC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-N-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 GNG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UC-CG --)GA-UCGU AAA--GNUC| UGUN-GA-CA 1021 --GG-GAA-- GA-ACGC-UA --UGG-AGA( G----UAAC- -----U---) GUUC-CA-UA 1081 ---------- -------G-G U-GA-CGGC- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGNAU-A ACUAC-GUG( CCA--GCAGN CGCGGUA-A) U-A-C-GUNG |-GGGG-C-- 1201 AAG-CGUNGU CC-GGAAUUA -UU-GGNC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 C-UU-AAG|U CUG---GUGU U-UAA-GG-C CA-AGG-C(- UC-A)A-CCU -UG-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG U-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G NGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -N-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 NCU--GU-AA CUGACG-CUG AG-G------ -------NG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(NUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUANUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-NC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -NGA)GGUG- ---------- GA-GCGAA-U CCUAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGNA -UGAAGU-CG -GAAU-UGN- -UAGUA-CUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCCC- GCC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.amylyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus amylolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus amylolyticus. ORGANISM Paenibacillus amylolyticus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60606 Former RDP Sids: B.amylytic NCIMB 8144 = DSM 329 = CECT 375 = CCM 1084 = ATCC 9966 NB: former name Bacillus amylolyticus BASE COUNT 352 a 324 c 435 g 288 t 2977 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- -----CUNGA U--------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGN-NG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UGAUGC---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUN-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-U AU-N--U-U- ---CUC-(-- --------UC 541 CU-------- -)-GGG---- GA-GA----U AA-UGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G --UNC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CC --GGU-AGA( G----UAAC- -----U---) GCUA-NC-GG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 C-UU-AAG|U CUN---GUGU U-UAA-GG-C CA-AGG-C(- UC-A)A-CCU -UN-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG U-NACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)N-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCC 1981 -UCU-A--(- GAGA-)-UAG -A-GGNG--- GC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--NUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----NUG|G 2701 G-CA-CU-C- U-AGA-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-AG -UA--CAACG GGA-A-G-C- GAAAGU-C(G 2881 -CGA)GAUG- ---------- GA-GCCNA-U CCUAUCAAAG -CU-N-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 NCACNGCNC- GUC-NCA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.ahiben 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus ahibensis. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus ahibensis. ORGANISM Paenibacillus ahibensis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (2), 299-306 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85395|g2073376 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 354 a 332 c 442 g 293 t 2955 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- -----GUUGA U--------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UGAUGN---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-U AU-U--U-C- ---CUC-(-- --------UC 541 CU-------- -)-GGN---- GA-GA----U AA-UGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-N|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UUCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GN-CA 1021 --GG-GAA-- GA-ACGU-CC --GGU-AGA( G----UAAC- -----U---) GCUA-UC-GG 1081 ---------- -------A-G U-GA-CGGC- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGNCU-A ACUAC-GUN( NCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CN- 1261 U-UU-AAG|U CUG---GUGU U-UAA-GG-C CA-AGG-C(- UC-A)A-CCU -CG-G-UUC- 1321 -G-CA-CUGG A-AAC-UGGG U-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UC-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUACUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCC 1981 -UCU-A--(- GAGA-)-UAG -A-GGCG--- GC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GN-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-AU-G A-CU-G-CCG --GU(-GA-C AA)-NCC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-NNUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-AG -UA--CAACG GGA-A-G-C- GA-AGU-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUAUCAAAG -CU-G-GUC- UCAGCUCGGN 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGUA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.glulyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus glucanolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus glucanolyticus. ORGANISM Paenibacillus glucanolyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78470|g2077915 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 364 a 325 c 446 g 289 t 2952 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C UU---GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- GAG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCUC---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------N-U AU-U--A-C- ---AUA-(-- --------GC 541 AU-------- -)-UAU---- GU-NA----U AA-UGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-AAC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GN-CA 1021 --AG-GAA-- GA-ACGU-CU --UCU-AGA( G----UAAC- -----U---) GUUA-UG-AG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGNGGNA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CN- 1261 U-NU-AAG|U CUG---GUGU U-UAA-AC-C CG-GGG-C(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GN(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GUUNA 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---GCA CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-NGU A-U-GU-GGU -UUANUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCU 1981 -GCU-A--(- GAGA-)-UAG -A-GGCG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAU -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-NU--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GCGUA UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUAUAAAAG -CC-A-GUC- UCAGCUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GN-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.lautu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus lautus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus lautus. ORGANISM Paenibacillus lautus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Emended description of Paenibacillus amylolyticus and description of Paenibacillus sp. nov. and Paenibacillus chibensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (2), 299-306 (1997) STANDARD No information REFERENCE 2 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78473|g2073371 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 361 a 330 c 448 g 288 t 2949 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C UU---GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GA---- AGG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCUC---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-U AU-U--U-C- ---ACA-(-- --------GC 541 AU-------- -)-UAU---- GG-AA----U AA-UGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --AG-GAA-- GA-ACGU-CU --UCU-AGA( G----UAAC- -----U---) GCUA-GG-AG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-UC- 1261 U-UU-AAG|U CUG---GUGU U-UAA-AC-C CG-AGG-C(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCC 1981 -UCU-A--(- GAGA-)-UAG -A-GGCG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGN-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAN-U CCUAUAANAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCANC-U- C)-GCCUGCA -UGAAGU-CG -GNAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGN-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.macqr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus macquariensis str. 673 NCTC 10419 (T). ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus macquariensis str. 673 NCTC 10419 (T). ORGANISM Paenibacillus macquariensis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10419 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60625 Former RDP Sids: B.macquar2 NCTC 10419 (T) = NCIMB 9934 = NRS 1534 = ATCC 23464 = DSM 2 isolate_name= 673 NB: former name Bacillus macquariensis BASE COUNT 364 a 336 c 438 g 294 t 2944 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--C AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GUUN UUUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCGA AACNAC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-U GU-U--U-C- ---UUC-(-- --------UC 541 AU-------- -)-GAA---- GA-GA----C AC-UGAAA-- ---GGCGGA- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -UCUGC--C- A--CUU---- 661 ----AUAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(N -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGC-UU --GGG-AGA( G----UAAC- -----U---) GCUC-UC-AA 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-N ACUNC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C -G-GGG-C(- UC-A)A-CCC -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGA U-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCC 1981 -ACU-A--(- GAGA-)-UAG -U-GGCG--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-GCCAA-U CCCACCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.macqri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus macquariensis str. 673 DSM 2. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus macquariensis str. 673 DSM 2. ORGANISM Paenibacillus macquariensis. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE Phylogenetic diversity in the genus Bacillus as seen by 16SRNA sequencing studies JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 2 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57305 Former RDP Sids: B.macquari DSM 2 = NCIMB 9934 = NRS 1534 = ATCC 23464 = NCTC 10419 (T) isolate_name= 673 NB: former name Bacillus macquariensis BASE COUNT 375 a 340 c 458 g 303 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~AAUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUNC-AUGCN A-GUC-GAGC 121 G--GA----G U----UG--- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUUUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCAN AN-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-N C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU N--------- ------CC-- G(-GAAA-)C -GGNA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-G UU-U----C- ---UUC-(-- --------UC 541 AU-------- -)-GAA---- GA-GA----C AC-UGAAA-- ---GGCGGA- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -UCNGC--C- A--CUU---- 661 ----AUAG-- AUN---U-|N NNUNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-NG| -G-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UNUU-GC-CA 1021 --GG-GAA-- GA-ACGC-UU --GGG-AGA( G----UAAC- -----U---) GCUC-UC-AA 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UU-C CG-GGG-C(- UC-A)A-CCC -CG-N-GNC- 1321 -G-CA-CUGG A-AAC-UGGA U-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- UU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCC 1981 -ACU-A--(- GAGA-)-UAG -U-GGGN--- GG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---A(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGUC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-C- GA-AAU-C(G 2881 -UGA)GAUG- ---------- GA-GCCAA-U CCCACCAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAC A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UG- AUG....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.amyly2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus amylolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus amylolyticus. ORGANISM Paenibacillus amylolyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (2), 299-306 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85396|g2073377 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 360 a 340 c 436 g 297 t 2943 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCUC---A -AGUU-U-GG 421 -GAC-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------U-G UU-U--U-C- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GGAAA----A CU-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AC-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-NA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGC-UU --GGG-AGA( G----UAAC- -----U---) GCUC-UC-AA 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AUC- 1321 -G-CA-CUGG A-AAC-UGGG U-GACUU-GA GUG-----CA G-AA-NAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-ANAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ---GGUUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AU----CGA 1981 -UGC-A--(- GAGA-)-UGU -A-UCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AUA-CG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C NUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-NCCAA-U CCCAACAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAANU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCCCGGGUCU UGUUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.pabuli 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus pabuli. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus pabuli. ORGANISM Paenibacillus pabuli. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60630 Former RDP Sids: B.pabuli NCIMB 12781 = ATCC 43899 = NRRL NRS-924 = DSM 3036 (T) NB: former name Bacillus pabuli BASE COUNT 343 a 334 c 446 g 287 t 2966 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----G U----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- -AC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCUC---A -AGUU-U-GG 421 -GAC-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GA 481 AU-AGU---- ---------- -------U-G UU-U--U-C- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GA-GA----A CU-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU GAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGC-UU --GGG-AGA( G----UNAC- -----U---) NCUC-UN-AA 1081 ---------- -------G-G U-NA-CGGU- A-CCU-N-AG A-AG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUNGU CC-GGAAUNA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AUC- 1321 -G-CA-CUGG A-AAC-UGGG U-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUN AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|G -GU-GU-NAG -GG-GU---- ---------- 1681 -(NUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(NAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UAC-A--(- GAGA-)-UGU -A-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-U- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-ACGAA-U CCUAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 NCACCGCNC- GUC-ACA--- --CCN-CGAG A--GU-UUA- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.illnoi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus illinoisensis. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus illinoisensis. ORGANISM Paenibacillus illinoisensis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Emended description of Paenibacillus amylolyticus and description of Paenibacillus illinoisensis sp. nov. and Paenibacillus chibensis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 47 (2), 299-306 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D85397|g2073378 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 354 a 341 c 447 g 290 t 2944 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCUC---A -AGCU-U-GG 421 -GAC-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GA 481 AU-ACU---- ---------- -------U-G CU-U--C-C- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GG-AA----G CU-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GAGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AC-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CC --UUG-AGA( G----UAAC- -----U---) GCUC-AA-GG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CA- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-AUC- 1321 -G-CA-CUGG A-AAC-UGGG U-GACUU-GA GUG-----CA N-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-ANAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---UU ---CGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-U- GA-ANC-C(G 2881 -CGA)GGUG- ---------- GA-ACGAA-U CCUAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.curdly 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus curdlanolyticus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus curdlanolyticus. ORGANISM Paenibacillus curdlanolyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78466|g2073370 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 357 a 334 c 451 g 291 t 2943 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCGU---A -AGAC-U-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------C-G AU-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---G G--AA----U CG-GGAAA-- ---GAAGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUUU--C- A--CUU---- 661 ----ACGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACAC-UU --GAG-AGA( G----UAAC- -----U---) GCUC-UU-GA 1081 ---------- -------G-U U-GA-CGGN- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CUG---UCGU U-UAA-GU-U CG-GGG-C(- UC-A)A-CCC -CG-U-GUC- 1321 -G-CG-AUGG A-AAC-UGCA A-GGCUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGN-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CGC-G--(- GAGA-)-UGU -G-ACUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CACU--- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-C- U-AGA-AU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGC-U-G-C- GA-AAG-A(G 2881 -CGA)UCUG- ---------- GA-GCGAA-U CCUAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCU- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-NC-GCCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.kobens 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus kobensis. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus kobensis. ORGANISM Paenibacillus kobensis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78471|g2077916 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 347 a 315 c 456 g 291 t 2967 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----U C----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CUAC---A -AGAC-C-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GAAU-G--C UAAUACC-GG 481 AU-ACGC--- ---------- -------G-A UU-U--C-C- ---UC--(-- --------GC 541 AU-------- -)-GGG---- GA-GA----U CG-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GN-CA 1021 --GG-GAA-- GA-ACGC-UU --GGG-AGA( G----UAAC- -----U---) GCUC-UC-AA 1081 ---------- -------G-G U-GA-CGGN- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAGA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 U-GU-AAG|U CUG---UCGU U-UAA-GU-U CG-GGG-C(- UC-A)A-CCC -CG-U-AUC- 1321 -G-CG-AUGG A-AAC-UGCA A-GGCUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GC---| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CACU--- ---------- ---------- ----(---UN ---GN---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-AA-CU-C- U-AGA-UU-G A-NU-G-CCG --GU(-GA-A AA)-ACC-G- -GAGG-A-AG 2761 G-GG-GGG-N UG-ACG--UN -A-AUUC-AU CAU-G-CC-C CUUNU-G-AC -CU--GGGU- 2821 U-ANA-NA-C GUN--CUANA AUGGC-C-GG -UA--NAACG GGU-U-G-N- GA-GGG-N(G 2881 -NGA)CCCG- ---------- GN-GCGAU-U CCUUA-AAAG -CC-G-GUN- UCAGUCCGGU 2941 U-UGAAGGU- (UGAAAC-U- C)-GCCUGNA -UGAGGU-CG -GAUU-UGU- -UAGUA-AUC 3001 GN-GGN-(UC -AGA-AU)-G CCG-NGGNG- AUUAC-GUC- CCC-GGG-UN UUGUN----N 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- AA-AN-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.apiari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus apiarius. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus apiarius. ORGANISM Paenibacillus apiarius. REFERENCE 1 AUTHORS Nakamura,L.K. TITLE Paenibacillus apiarius sp. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 688-693 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49247 BASE COUNT 369 a 340 c 475 g 295 t 2897 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- CUGA...... .......... .......... .......... 301 .......... .......... .......... .......... .UG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CUGU---G -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AGAC--- ---------- -------A-U UU-U--C-C- ---UC--(-- --------GC 541 CU-------- -)-GAG---- GG-AA----A UG-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GCAG-- AUG---G-|A CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-NUUAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGC-CA --GGG-AGA( G----UAAC- -----U---) GCUC-UC-UG 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGUU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-GA- 1261 U-GU-AAG|U UGG---GUGU U-UAA-AC-C UA-GGG-C(- UC-A)A-CCU -UG-G-GUC- 1321 -G-CA-UCCA A-AAC-UGCA U-GACUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCC(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUNCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----CGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GU-(-AA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGAAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-U-|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AC--UUU- 2281 AG--UUGU-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C UN)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGA- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCUAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- ANUAC-GUU- CCC-GGG-UC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGNGC-C-A G-CC-NC-CG A-NGGU-GGG GUA-GA-UG- AUN-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.alvei2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus alvei. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus alvei. ORGANISM Paenibacillus alvei. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE Phylogenetic diversity in the genus Bacillus as seen by 16SRNA sequencing studies JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57304 Former RDP Sids: B.alvei ATCC 6344 (T) = NCTC 6352 = NCIMB 9371 = DSM 29 = CCM 2051 = NRRL B-383 = NCIMB 8198 = ATCC 8240 = NCDO 1153 = IMAB B-3-4 = IFO 3343 NB: former name Bacillus alvei BASE COUNT 358 a 332 c 425 g 294 t 2967 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAACGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCC- U-GA...... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- UAA--CCU-G C-CCAU---A -AG....... 421 .GAU-AA-CC C--------- ------AC-- G(......). ......G--C UAAUACC-AG 481 AU-AGC---- ---------- -------A-U UU-U--C-C- ---UC--(-- --------GC 541 AU....---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| .GCUGU--C- A--CUU---- 661 ----AUGG-- AUN---G-|A CCUNC----- -NN|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGC-CU --AGG-AGA( G----UAAC- -----U---) GCUC-CU-AG 1081 ---------- -------G-G U-NA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GNGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-NA- 1261 U-GU-AAG|U UGG---GUGU U-UAA-AC-C UA-GGG-C(- UC-A)A-CCU -UG-G-GUC- 1321 -G-CA-UCNN A-AAC-UGCA U-NGCUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---GAAUG-- -AC----CGC 1981 -NCU-A--(- GAGA-)-UAG -G-GCNU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- NG-------- ----GAN-C| AUN-CA-AGA |---C|A--G 2161 GU-GN-NGCA UG|G-UUG-- UCG-UCA|-G C-N---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C NUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GG -UA--CNNCG GGA-A-G-C- GA-AGC-U(G 2881 -UGA)GGUG- ---------- GA-GCNAA-U CCUAA-AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GC......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... ....GC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UG- AU........ 3301 .......... GUAA-CAAG. ......GUAU C(G....).. .......... GAUCACCUCC 3361 UUUC|UC~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.alvei3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus alvei. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus alvei. ORGANISM Paenibacillus alvei. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60604 Former RDP Sids: B.alvei2 NCDO 1153 = NCTC 6352 = NCIMB 9371 = DSM 29 = CCM 2051 = ATCC 6344 (T) = NRRL B-383 = NCIMB 8198 = ATCC 8240 = IMAB B-3-4 = IFO 3343 NB: former name Bacillus alvei BASE COUNT 332 a 324 c 417 g 267 t 3036 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -CUGAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CN-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CC C--------- ------AC-- G(-GAAA-)C -GUGA-G--C UAAUACC-AG 481 AU-AGG---- ---------- -------C-A UU-U--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-GA----A UG-AGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- N--CUU---- 661 ----AUGG-- AUG---G-|A CCUNC----- -GG|----CG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A U-NAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUN| UNUU-GC-CA 1021 --GG-GNA-- GA-ACGC-CU --AGG-AGA( G----UNAC- -----U---) NCUN-NU-NG 1081 ---------- -------G-G U-NA-CGGU- A-CCU-N-AG A-AG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CNN--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUNGU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GC-NA- 1261 U-GU-AAG|U UGG---GUGU U-NNA-AC-C UA-GGG-C(- UC-A)A-CCU -NN-G-GUC- 1321 -G-CA-UCCN A-AAC-UGCA U-NGCUN-GA GUN-----CN G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUN-GCG(-G UNAAA)-UGC -GU-NGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUG-- ---------- ---------- ---------G 1501 GCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-NGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUNC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-NAG -GG-GU---- ---------- 1681 -(NUC-GA)U ---------- ---------- ---------- -------ACC -CUUNG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -NNNAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------U ---GAAUG-- -AC----CGC 1981 -CCU-A--(- GAGA-)-UAG -G-GCNN--- UC-------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GA--C| NUN-CN-AGA |---C|A--G 2161 GU-GG-NGCA UA|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-AC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUN--CUNCN AUGGC-U-NG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUNA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-NGCAGGC- (UGCNAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-NGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-NUU- CCC-GGN-UC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-CGAG A--GU-UUA- CA-AC-ACCN .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.alvei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus alvei. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus alvei. ORGANISM Paenibacillus alvei. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78317|g1089783 IFO 3343 = NCTC 6352 = NCIMB 9371 = DSM 29 = CCM 2051 = ATCC 6344 (T) = NRRL B-383 = NCIMB 8198 = ATCC 8240 = NCDO 1153 = IMAB B-3-4 BASE COUNT 332 a 324 c 417 g 267 t 3036 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -CUGAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CN-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CC C--------- ------AC-- G(-GAAA-)C -GUGA-G--C UAAUACC-AG 481 AU-AGG---- ---------- -------C-A UU-U--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GG-GA----A UG-AGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- N--CUU---- 661 ----AUGG-- AUG---G-|A CCUNC----- -GG|----CG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A U-NAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUN| UNUU-GC-CA 1021 --GG-GNA-- GA-ACGC-CU --AGG-AGA( G----UNAC- -----U---) NCUN-NU-NG 1081 ---------- -------G-G U-NA-CGGU- A-CCU-N-AG A-AG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CNN--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUNGU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GC-NA- 1261 U-GU-AAG|U UGG---GUGU U-NNA-AC-C UA-GGG-C(- UC-A)A-CCU -NN-G-GUC- 1321 -G-CA-UCCN A-AAC-UGCA U-NGCUN-GA GUN-----CN G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUN-GCG(-G UNAAA)-UGC -GU-NGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUG-- ---------- ---------- ---------G 1501 GCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-NGG-GA- 1561 GC-NAA-CA- -GG(AUUN-G AUNC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-NAG -GG-GU---- ---------- 1681 -(NUC-GA)U ---------- ---------- ---------- -------ACC -CUUNG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -NNNAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------U ---GAAUG-- -AC----CGC 1981 -CCU-A--(- GAGA-)-UAG -G-GCNN--- UC-------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GA--C| NUN-CN-AGA |---C|A--G 2161 GU-GG-NGCA UA|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-AC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUN--CUNCN AUGGC-U-NG -UA--CAACG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUNA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-NGCAGGC- (UGCNAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-NGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-NUU- CCC-GGN-UC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-CGAG A--GU-UUA- CA-AC-ACCN .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.macer3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus macerans. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus macerans. ORGANISM Paenibacillus macerans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60624 Former RDP Sids: B.maceran2 NCDO 1764 = NCTC 6355 = NCIMB 9368 = IAM 1227 = CCM 2012 = DSM 24 (T) = ATCC 8244 NB: former name Bacillus macerans BASE COUNT 340 a 323 c 437 g 269 t 3007 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----UNAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAU---- -GG|-UN--- ANCG-GNGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUAGG- CAA--CCU-N C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A AG-U--C-U- ---UCC-(-- --------GC 541 AU-------- -)-NGG---- AG-AC----U UN-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- A--CUU---- 661 ----ACGG-- AUG-----|- CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA NGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-NAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUN| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-NU --UGU-NGA( G----UNAC- -----U---) GCUN-GG-NG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-N-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GC-UN- 1261 N-UU-AAG|U CUN---GUGU N-UAA-UC-C UN-GGG-C(- UN-A)A-CUC -CG-G-GUC- 1321 -G-CA-CUNG A-AAC-UNGA C-GGCUN-NA GUG-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(NAA- ---C)A-CA- UUAA-GCACU N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU NG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UNU-A--(- GAGA-)-UAU -G-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AC--UUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UN ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-NGA-GU-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGN-C(G 2881 -NGA)NCUG- ---------- GA-GCGAA-U CCUAGAAAAG -CC-G-GNN- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-NGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.macer2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus macerans. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus macerans. ORGANISM Paenibacillus macerans. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE Phylogenetic diversity in the genus Bacillus as seen by 16SRNA sequencing studies JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57306 Former RDP Sids: B.macerans ATCC 8244 = NCTC 6355 = NCIMB 9368 = IAM 1227 = CCM 2012 = NCDO 1764 = DSM 24 (T) NB: former name Bacillus macerans BASE COUNT 374 a 340 c 471 g 291 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- -G-|------ NNCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A AG-U--C-U- ---UCC-(-- --------GC 541 AU-------- -)-AGG---- AG-AC----U UG-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- A--CUU---- 661 ----ACGG-- ANN---N-|N N-UNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 NG-UG-GG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-NG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| NNUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UCU-AGA( G----UAAC- -----U---) GCNA-NG-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UG- 1261 U-UU-AAG|U CUG---GUGU A-UAA-UC-C CG-GGG-C(- UC-A)A-CUC -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGA C-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UGU-A--(- GAGA-)-UAU -G-GCUU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--UUU- 2281 AG--UUGC-C AG-CAA---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--UGNC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGU-A(G 2881 -UGA)UAUG- ---------- GA-GCGAA-U CCUAGAAAAG -CC-N-GUC- NCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGCCA-G-C C-GC-CG-AA G-GUGG-GGU AGA-UG-AU- UGG-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.macern 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus macerans. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus macerans. ORGANISM Paenibacillus macerans. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78319|g1089785 BASE COUNT 341 a 335 c 448 g 280 t 2972 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A AG-U--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGG---- AG-NC----U UG-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----ACGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-N---GU-A 901 GGG-AUUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AGA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UCU-AGA( G----UAAC- -----U---) GCNA-CA-NG 1081 ---------- -------A-G U-GA-CGGN- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCNNCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GC-UN- 1261 N-UU-AAG|U CUN---GUGU N-UAA-UC-C UN-GGG-C(- UN-A)A-CUC -CG-G-GUC- 1321 -G-CA-CUNG A-AAC-UNGA C-GGCUN-NA GUG-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CNAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-GU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UGU-A--(- GAGA-)-UAU -G-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-NUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UU-G |-AC--UUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-UGG-C(G 2881 -CGA)UCUG- ---------- GA-GCGAA-U CCUAGAAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GNAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUNC-GUU- CCC-GGG-UC UUGUN----C 3061 ACACCNCCC- NUC-ACA--- --CCA-CGAG A--GU-UUN- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.durum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus durum. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus durum. ORGANISM Paenibacillus durum. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A.E. TITLE The Phylogeny of the genus Clostridium: Proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77846|g572639 Former RDP Sids: C.durum DSM 1735 (T) = VPI 6563-1 = ATCC 27763 NB: former name Clostridium durum BASE COUNT 363 a 342 c 469 g 278 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCCU---U -GGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-C CU-C--U-U- ---AGC-(-- --------UC 541 CU-------- -)-GCU---- AN-GA----G GC-UGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CCA---- 661 ----AGGG-- AUG---N-|N CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UGU-AGA( G----UAAC- -----U---) GCUA-CA-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UG- 1261 U-UU-AAG|U CUG---GUGU U-UAA-AC-C AU-GGG-C(- UC-A)A-CCU -GU-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGA C-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- GUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UCG 1981 -UCU-A--(- GAGA-)-U-G -A-UGGCGCG G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --AG(UGA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGC-G(C 2881 -GAG)GCGG- ---------- GA-GCCAA-U CUUAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGCUAAUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUGC AAUGACGUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AG-U-GGG GUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.azofi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus azotofixans str. P3L-5 ATCC 35681 (T). ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus azotofixans str. P3L-5 ATCC 35681 (T). ORGANISM Paenibacillus azotofixans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35681 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60608 Former RDP Sids: B.azotofix ATCC 35681 (T) = DSM 5976 isolate_name= P3L-5 NB: former name Bacillus azotofixans BASE COUNT 350 a 330 c 432 g 273 t 2991 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----G UU---GUGAU ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------NG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGAUC---- AAC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCCU---U -GGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUN-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-C CU-C--U-N- ---AGC-(-- --------UC 541 CU-------- -)-GCU---- AG-GA----G GC-UGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CCN---- 661 ----ANGN-- AUN---N-|N --UNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-NC --UNN-AGA( G----UAAC- -----U---) GCUN-GA-GG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GNGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GC-UN- 1261 U-UU-AAG|U CUN---GUGU U-NNA-AC-C AU-GGG-C(- UC-A)A-CCU -NU-N-GUC- 1321 -G-CA-CUGG A-AAC-UGGA C-AGNUN-CA GUG-----CA G-AA-GAGGA AAG-U|NGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 GCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(NAA- ---C)A-CA- GUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AA----UAC 1981 -GUU-A--(- GAGA-)-UAG -C-GUAG--- GC-------- ----U----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- --------C| AGA-GG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--UUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AGA-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGC-G(C 2881 -GAG)GC-G- ---------- GA-GCCAA-U CUUAU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UN UNGUA----C 3061 ACACGGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.azofix 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus azotofixans. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus azotofixans. ORGANISM Paenibacillus azotofixans. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78318|g1089784 BASE COUNT 363 a 333 c 446 g 282 t 2952 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G UU---GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UC---- AAC|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAC---A -AGAC-A-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-CG 481 AU-ACA---- ---------- -------U-C CU-U--U-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- AG-AA----G GA-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GUGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-NG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G CAG-GC-AG- N-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GN-CA 1021 --GG-GAA-- GA-ACGU-CU --UGU-AGA( G----UAAC- -----U---) GCUA-CA-AG 1081 ---------- -------A-G U-GA-CGGN- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCNGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UC- 1261 U-UU-ANG|U CUG---GUGU U-UAN-UC-C CG-AGG-N(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -G-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--CUU- 2281 AG--UUGN-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGAA--G-C- GA-AAU-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUAGAAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUNGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGA- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG G--AU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.peoria 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus peoriae. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus peoriae. ORGANISM Paenibacillus peoriae. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K., Nakamura,L.K. and Komagata ,K. TITLE Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus JOURNAL Int. J. Syst. Bacteriol. 47 (2), 289-298 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78476|g2077918 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 365 a 329 c 439 g 282 t 2961 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G UU---GU--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AC---- AAC|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAC---A -AGAC-A-GG 421 -GAU-AN-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-CG 481 AU-ACA---- ---------- -------U-C CU-U--U-U- ---UCU-(-- --------GN 541 AU-------- -)-GGA---- AG-AA----G GA-GGAAA-- ---GACGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- A--CUU---- 661 ----GUGG-- AUG---G-|G CCUGC----- -GG|----CG N--AUUA-G- CUA-G---UU 721 GG-NG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGU-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUN C-CCCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUN-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UGU-AGA( G----UAAC- -----U---) GCUA-CA-AG 1081 ---------- -------A-G U-GA-CGGN- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGNU-A ACUAC-GUN( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CNUCGU CC-NNAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -N|-GC-UC- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C CG-AGG-C(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- NUA-GCG(-G NGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GN(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---CUCUG-- -AU----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-UCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-NA-G A-CU-G-CCG --GC(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-NAU-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUAGAAAAG -CC-G-GUC- UCAGCUCGGA 2941 U-UGUAGGA- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGN-AU)-G CCG-NGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.plymy3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus polymyxa. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus polymyxa. ORGANISM Paenibacillus polymyxa. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16276|g457638 Former RDP Sids: B.polymyx3 NB: former name Bacillus polymyxa BASE COUNT 380 a 347 c 473 g 291 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G UU---AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----CU---- AAC|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAC---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-CG 481 AU-GCC---- ---------- -------U-C CU-U--U-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- AG-AA----G GA-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----GUGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UGU-AGA( G----UAAC- -----U---) GCUA-CA-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CUG---GUGU U-UAA-UC-C CG-AGG-C(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG GA-CCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--CUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGAAGAG-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCCAA-U CCUAGAAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.plymy2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus polymyxa. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus polymyxa. ORGANISM Paenibacillus polymyxa. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60632 Former RDP Sids: B.polymyx2 NCDO 1774 = CCM 1459 = NCTC 10343 = NCIMB 8158 = DSM 36 = ATCC 842 (T) NB: former name Bacillus polymyxa BASE COUNT 355 a 328 c 428 g 278 t 2987 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G UN---AU--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAGA-AG (--CU----- ---------- ---------- 241 --------NG -)CU-UCUNA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UN---- AAC|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAC---A -AGAC-A-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUA-G--C UAAUACC-CG 481 AU-ACA---- ---------- -------U-C CU-U--U-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- AG-AA----G GA-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUNU--C- A--CUU---- 661 ----NUGG-- AUG-----|- CCUNC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UNUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UGU-AGA( G----UAAC- -----U---) GCUN-NN-AG 1081 ---------- -------A-G U-NA-CGGU- A-CCU-N-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CUN---GUNU U-UAA-UC-C CG-AGG-C(- UC-A)A-CUU -CG-G-GUC- 1321 -G-CA-CUNG A-AAC-UGGN G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UN-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -UUAAUU-CN -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-CCNN--- U--------- ----C----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--CUU- 2281 AG--UUGC-C AG-UAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-AAG-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UG -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GG -UA--CAACG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCUAGAAAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUA- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.plymyx 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus polymyxa. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus polymyxa. ORGANISM Paenibacillus polymyxa. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE Phylogenetic diversity in the genus Bacillus as seen by 16SRNA sequencing studies JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57308 Former RDP Sids: B.polymyxa DSM 36 = CCM 1459 = NCTC 10343 = NCIMB 8158 = ATCC 842 (T) = NCDO 1774 NB: former name Bacillus polymyxa BASE COUNT 296 a 250 c 381 g 249 t 3200 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAAUGG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GG----G UU---AN--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCNNA .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .........A -AGAU-A-GG 421 -GAU-AA-CU A--------- ------CC-- G(-GAAA-)C -GGUN-G--C UAAUACU-CG 481 AU-ACN---- ---------- -------U-C CU-U--U-U- ---CCU-(-- --------GC 541 AU-------- -)-GGG---- AG-AA----G -A-GGAAA-- ---GGCGGA- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----AUGG-- AAG---G-|G CCUUC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUANU-A A|-GGC-GA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGA ----NA-U-- CGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ANN-C-UCC -(UACG)--G GAG-UC-NG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCUA CGCU-GU-GU 961 G-A-GU-G-A U-GAA--G-G U-(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CA 1021 --GG-GAA-- GA-ACGU-CU --UGN-AGA( G----UAAC- -----U---) GCUA-CA-AG 1081 ---------- -------A-G U-GA-CGGU- A-CCU-G-AG A-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GNAAUUA -UU-GGGC|G UAAA-GUGU- GCG-CAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CUN---GUNU U-UUA-UC-C NG-AGG-C(- UU-N)N-CUU -UG-G-GNU- 1321 -G-CA-CUNG N-AAC-UGGG G-AGNNU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUUGAN-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUGG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGNAC 1801 G.......(. ...)...... .......... .......... .....GGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UC--A--(- GAGA-)-UAG -A-CCNU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-NGA |---C|N--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... ...AA-GN-G A-CU-G-C-G --GU(-GA-C AA)-ACC-G- -GNGG-A-AG 2761 G-CG-GGG-A UG-ACG--NN -N-AAUC-AU CAU-G-CC-C NUUAU-G-AC -CU--GGUC- 2821 U-ACN-CA-C GUA--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- GA-AGG-A(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCUAGAAAAG -CC-N-GNC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGN-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AN)-G CCG-CNG... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.4 BB.BREVIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.4 BB.BREVIS_GROUP. ORGANISM 2.16.8.4 BB.BREVIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.brevis3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus brevis. ORGANISM Brevibacillus brevis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78457|g1695651 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 338 c 442 g 283 t 2970 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGN-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-C-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UN-U--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-A|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GGA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G NC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAC-- GA-AUAA-GU --ACC-GNU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GN(-G AN-G)GCGG- -NUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UN-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|N-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CNCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCNAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.formosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus formosus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus formosus. ORGANISM Brevibacillus formosus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78460|g1695654 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 341 c 447 g 284 t 2961 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UN-U--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GGNGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-NA 1021 --GG-GAC-- GA-AUAA-GU --GCC-GNU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GG-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCCAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.brevis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus brevis. ORGANISM Brevibacillus brevis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60612 Former RDP Sids: B.brevis NCIMB 9372 = CCM 2050 = DSM 30 = ATCC 8246 (T) NB: former name Bacillus brevis BASE COUNT 343 a 328 c 436 g 282 t 2987 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-N-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UU-U--G-G- ---AUN-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GNNGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGN----- -GN|----NG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-NNACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-NA 1021 --GG-GAC-- GA-ANAN-GU --NCC-GUU( N----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUNU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UGGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---NGCUG-- -AC----CGC 1981 -UCU-N--(- GAGA-)-CAG -A-GCUU--- N--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGN-GN-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCCAA-U CUCUN-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGNG A--GU-UUG- NA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.agri1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus agri. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus agri. ORGANISM Brevibacillus agri. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78454|g1695648 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 345 a 339 c 442 g 287 t 2963 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UG-U--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CU-GA----A AA-GAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUUC--- ---)------ ---------| -GCUAU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GG-GAC-- GA-ACAC-GU --ACC-GNU( C----GAACA -----G---) GGCG-GU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAA-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-NUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GNGG- -NUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CNCUG-- -AC----CNC 1981 -UCU-G--(- GAGA-)-CAG -A-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--G| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-U AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCCAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.reuszer 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus reuszeri. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus reuszeri. ORGANISM Brevibacillus reuszeri. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78464|g1695658 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 346 a 341 c 444 g 286 t 2959 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UN-U--G-G- ---ANC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----A AA-GAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAC-- GA-AUAA-GU --ACC-GCU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-ACAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-C-G-C- UA-GCC-C(G 2881 -CGA)GGGU- ---------- AU-GCCAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.prbrevi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus parabrevis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus parabrevis. ORGANISM Brevibacillus parabrevis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78463|g1695657 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 344 a 342 c 444 g 283 t 2963 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-C-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UG-U--G-G- ---AUU-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GG-GAC-- GA-ACAC-GU --GCC-GNU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-ANA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G NGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-ACAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|N-CCU- G-GGGAGUAC 1801 GCU-C---(G CAN)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AN----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCCAA-U CUCUG-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.brevis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus brevis. ORGANISM Brevibacillus brevis. REFERENCE 1 AUTHORS Kop,J., Kopylov,A.M., Magrum,L., Siegel,R., Gupta,R., Woese ,C.R. and Noller,H.F. TITLE Probing the structure of 16S ribosomal RNA from Bacillus brevis JOURNAL J. Biol. Chem. 259, 15287-15293 (1984) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M10111 Former RDP Sids: B.brevis1 NB: former name Bacillus brevis BASE COUNT 346 a 327 c 420 g 278 t 3005 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -G........ .......... ..GC-CU--A AUAC-AUGCA A-........ 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-C-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UU-U--G-G- ---AUU-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGA----- -G.|...... .......... .......... 721 .........( ....AC-GG) -C-CUACC-A A|-G...... .......... .......... 781 .........| ........(. ....)..... .....A-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---NN-N 901 NNG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GG-GAC-- GA-ACAC-GU --GCC-GUU( A----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-G..( ........GC CGCGGUA-A) U-A-C-G... |......... 1201 .......... ....GAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UUC- 1321 --GCA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|.... 1381 .......... .......(.. ....A)-UGC -GU-AGAGAG UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GNNN-G UC----CAC- G-NN-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GUG--- ---------- 1681 -(UUU-CA)A ---------- ---------- -U-------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-NNN- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU .......... .....CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-NN-NNNA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GGGG- ---------- AC-GCCAA-U CUCUG-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.choshin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus choshinensis str. HPD52. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus choshinensis str. HPD52. ORGANISM Brevibacillus choshinensis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78459|g1695653 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 isolate_name= HPD52 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 339 c 446 g 286 t 2962 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U UN-U--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A AA-GAAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-N|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAC-- GA-ACAA-GU --ACC-GNU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GN-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGN |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GGGG- ---------- AC-GCCAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- GA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp_H4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. H4.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. H4.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS Former RDP Sids: Rhb.H4 isolate_name= H4.Rhizobium isolate BASE COUNT 67 a 69 c 98 g 53 t 4089 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AC-AUGCA A-GUC-GAGC 121 G-AGU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-GC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- A-A--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U U--U--C-GG ---AUU-(-- --------GC 541 AU-------- -)-GAU---C CG-AU----A GG--GAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Rhb.sp_TM1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Rhizobium sp. str. TM1.Rhizobium isolate. ACCESSION No information KEYWORDS No information. SOURCE Rhizobium sp. str. TM1.Rhizobium isolate. ORGANISM Rhizobium sp. REFERENCE 1 AUTHORS Wernegreen,J. JOURNAL Unpublished (1997) STANDARD No information COMMENTS Former RDP Sids: Rhb._TM1 isolate_name= TM1.Rhizobium isolate BASE COUNT 64 a 64 c 94 g 53 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGUC-UC (--UU----- ---------- ---------- 241 --------CG -)GG-GGCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GUGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- A-A--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------U-U U--U--C-GG ---AUU-(-- --------GC 541 AU-------- -)-GAU---C CG-AU----A GG--GAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -ACA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.centspr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus centrosporus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus centrosporus. ORGANISM Brevibacillus centrosporus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78458|g1695652 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 341 a 340 c 436 g 285 t 2974 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GNC -GANC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-NG 481 AU-AGN---- ---------- -------G-U CU-U--G-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- NN-AA----G AC-GGAAA-- ---GGUAGC- ---------- 601 --(------- ---NCNG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----NCGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CN --)GA-UUGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAC-- GA-ACAA-GU --ACC-GNU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CNU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 U-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA NUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-ACAG- 1441 -U-G-GC(-G AN-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|N-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CCU-C(G 2881 -CGA)GAGG- ---------- AC-GCCAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CNGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.latero3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus laterosporus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus laterosporus. ORGANISM Brevibacillus laterosporus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16271|g457648 Former RDP Sids: B.lateros3 IAM 12465 = ATCC 64 = NCTC 2613 = JCM 2496 = NCIMB 9367 (T) = CCM 2116 = AMNH 797 = ATCC 4517 = NCDO 1763 = DSM 25 (T) = CECT 15 = AMC 797 NB: former name Bacillus laterosporus BASE COUNT 377 a 341 c 452 g 299 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-U UU-U--G-C- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GC-GA----A AC-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AACA-GU --GCU-AUU( U----AAAUA -----A---) GGUA-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GC-UA- 1261 U-GU-AAG|U CUG---AUGU U-AAA-GC-C CG-AGG-C(- UC-A)A-CCU -CG-G-UUC- 1321 -G-CA-UUGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CUU-C(G 2881 -CGA)GAAG- ---------- AU-GCUAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UA- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.lateros 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus laterosporus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus laterosporus. ORGANISM Brevibacillus laterosporus. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE Phylogenetic diversity in the genus Bacillus as seen by 16SRNA sequencing studies JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57307 Former RDP Sids: B.laterosp ATCC 64 = NCTC 2613 = JCM 2496 = NCIMB 9367 (T) = IAM 12465 = CCM 2116 = AMNH 797 = ATCC 4517 = NCDO 1763 = DSM 25 (T) = CECT 15 = AMC 797 NB: former name Bacillus laterosporus BASE COUNT 371 a 338 c 439 g 307 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-U UU-U--N--- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GC-GA----A AC-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- ACU---G-|G GUU-C----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AACA-GU --GCU-AUU( U----AAAUA -----A---) GGUA-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GC-UA- 1261 U-GU-AAG|U CUG---AUGU U-AAA-GC-C CG-AGG-C(- UC-A)A-CCU -CG-G-UUC- 1321 -G-CA-UUGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCNC--- UU-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CUU-C(G 2881 -CGA)GAAG- ---------- AU-GCUAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC -GAA-G-NCG 3121 G-NNN-N-NU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.latero4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus laterosporus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus laterosporus. ORGANISM Brevibacillus laterosporus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78461|g1695655 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 JCM 2496 = ATCC 64 = NCTC 2613 = NCIMB 9367 (T) = IAM 12465 = CCM 2116 = AMNH 797 = ATCC 4517 = NCDO 1763 = DSM 25 (T) = CECT 15 = AMC 797 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 348 a 320 c 420 g 283 t 3005 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGG-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUCU---C -AGAC-N-GG 421 -NAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-U UU-U--G-C- ---UUC-(-- --------GC 541 CU-------- -)-GAN---- GC-GA----A AC-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---GCAN--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GN-GAA-- GA-AACA-GU --GCU-AUU( U----AAAUA -----A---) GGUA-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------N 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GC-UA- 1261 U-GU-AAG|U CUG---AUGU U-AAA-GC-C CG-AGG-C(- UC-A)A-CCU -CG-G-UUC- 1321 -G-CA-UNGG A-AAC-UGNG U-AGCUU-GA GUG-----CA G-NA-GAGGA AAG-U|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGANA)-UNC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -N-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUNAG-UGU 1741 CG--CA---- --GN-(UAA- ---C)N-CA- AUAA-GCACU C|C|N-UCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-NC AGG-UC-UNG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- C--------- ---CC----- --(NU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GS-------- -----G--C| AGN-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |NU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAN -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --NC(-GA-C AA)-NAC-G- -GNGG-A-AG 2761 G-CG-GGG-A UG-ACG--NC -A-ANUC-AU CAU-G-CC-C CUNAU-G-AN -CU--GGGN- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-N- UA-CUU-C(G 2881 -CGA)GAAG- ---------- AU-NCUAN-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGNAGGU- (UGCANC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-NGGNG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --NCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.latero2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus laterosporus. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus laterosporus. ORGANISM Brevibacillus laterosporus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60620 Former RDP Sids: B.lateros2 NCDO 1763 = ATCC 64 = NCTC 2613 = JCM 2496 = NCIMB 9367 (T) = IAM 12465 = CCM 2116 = AMNH 797 = ATCC 4517 = DSM 25 (T) = CECT 15 = AMC 797 NB: former name Bacillus laterosporus BASE COUNT 354 a 325 c 422 g 288 t 2987 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--UU----- ---------- ---------- 241 --------CG -)GA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-U UU-U----C- ---UUC-(-- --------GC 541 CU-------- -)-GAA---- GC-GA----A AC-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUNU--C- A--CUU---- 661 ----ANAN-- AUN---G-|G CCUNC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 NG-UG-AG-( GU-AAC-NG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUNUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AACA-GU --GCU-NUN( N----AAAUA -----A---) GGUA-GC-AC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC G-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GC-UA- 1261 U-GU-AAG|U CUG---AUGU U-AAA-GC-C CG-AGG-C(- UC-A)A-CCU -CG-G-UUC- 1321 -G-CA-UUGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-GA-GAGGA AAG-U|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG GGA-U-G-C- UA-CUU-C(G 2881 -CGA)GAAG- ---------- AU-GCUAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCNCNC- GUN-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.borstel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus borstelensis. ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus borstelensis. ORGANISM Brevibacillus borstelensis. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78456|g1695650 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 343 a 350 c 449 g 276 t 2958 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCGU---A -AGCU-C-GG 421 -GAU-AA-CA U--------- ------GG-- G(-GAAA-)C -UCAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-U CU-U--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-GA----G AC-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GA-GAC-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UA- 1261 N-GU-AAG|U CUG---GUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UUC- 1321 -G-CA-UCGG A-AAC-UGUG U-AGCUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGUA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GC-U--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG GGA-A-G-C- UA-GCU-C(G 2881 -CGA)GAGU- ---------- AU-GCCAA-U CUCUU-AAAA -CC-A-GUC- UCAGUCCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bb.thruber 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacillus thermoruber str. BT2 DSM 7064 (T). ACCESSION No information KEYWORDS No information. SOURCE Brevibacillus thermoruber str. BT2 DSM 7064 (T). ORGANISM Brevibacillus thermoruber. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA analysis JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 7064 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26921|g511105 Former RDP Sids: B.thruber DSM 7064 (T) = MIM 30.8.38 isolate_name= BT2 NB: former name Bacillus thermoruber BASE COUNT 369 a 372 c 489 g 284 t 2862 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------UC UGUUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCAGA CAGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CA U--------- ------AG-- G(-GAAA-)C -UUAU-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------G-C AC-C--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-GG----U GC-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GG-GAC-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CG- 1261 G-GU-AAG|U CUG---AUGU U-AAA-GC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UAC- 1321 -G-CA-UUGG A-AAC-UGCU C-GACUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GU---- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- -------ACC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCG 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG GGA-C-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- AA-GCCAA-U CUCUU-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.5 ANEURINIBACILLUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.5 ANEURINIBACILLUS_GROUP. ORGANISM 2.16.8.5 ANEURINIBACILLUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ab.migulan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aneurinibacillus migulanus. ACCESSION No information KEYWORDS No information. SOURCE Aneurinibacillus migulanus. ORGANISM Aneurinibacillus migulanus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78462|g1695656 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 ATCC 9999 (T) = JCM 8504 = DSM 2895 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 340 a 355 c 451 g 273 t 2957 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----U C----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-C UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GG--GAAA-- ---GACC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-U-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GN-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGCU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCGAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.acvorans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus acidovorans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus acidovorans. ORGANISM Bacillus acidovorans. REFERENCE 1 AUTHORS Lafay,B., Pichinoty,F. and Christen,R. TITLE Phylogenetic analysis of some Bacillus specific based on comparison of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77789|g456615 BASE COUNT 348 a 361 c 459 g 269 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-C UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GG--GAAA-- ----ACC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUG---C-|G CGUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-C- --GGG-A--( -----U-A-C ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --CG-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-----(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGCU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCGAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ab.migula2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aneurinibacillus migulanus. ACCESSION No information KEYWORDS No information. SOURCE Aneurinibacillus migulanus. ORGANISM Aneurinibacillus migulanus. REFERENCE 1 AUTHORS Meier-Stauffer,K., Busse,H.J., Rainey,F.A., Burghardt,J., Scheberl,A., Hollaus,F., Kuen,B., Makristathis,A., Sleytr,U .B. and Messner,P. TITLE Description of Bacillus thermoaerophilus sp. nov., to include a sugar beet isolate and Bacillus brevis ATCC 12990 JOURNAL Int. J. Syst. Bacteriol. 46, 532-541 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94195|g1313922 Former RDP Sids: B.migulanu DSM 2895 = JCM 8504 = ATCC 9999 (T) NB: Added by Bergey's to RDP Release 6.0 tree former name Bacillus migulanus BASE COUNT 360 a 370 c 476 g 277 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-C UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GA--GAAA-- ---GACC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGCU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCGAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ab.anurly3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aneurinibacillus aneurinilyticus. ACCESSION No information KEYWORDS No information. SOURCE Aneurinibacillus aneurinilyticus. ORGANISM Aneurinibacillus aneurinilyticus. REFERENCE 1 AUTHORS Shida,O., Takagi,H., Kadowaki,K. and Komagata,K. TITLE Proposal for two new genera, Brevibacillus gen. nov. and Aneurinibacillus gen. nov. JOURNAL Int. J. Syst. Bacteriol. 46 (4), 939-946 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78455|g1695649 Ref 1: Erratum:Int J Syst Bacteriol 1997 Jan;47(1):248 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 338 a 354 c 454 g 269 t 2961 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GNC -GANC-GC-- UGGC-GGU-G -UGC-CU--A AUAC-AUGCA A-GNC-GAGC 121 G--GA----C C----AAG-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAG--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-AG 481 AU-ACG---- ---------- -------U-U UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GA--GAAA-- ---GACC--- ---------- 601 --(------- ---UCU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -U-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-N(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-ACCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG GG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GA--A 1621 AAC-G-UUGA G--UG-UU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUG-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -UC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGNU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCCAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ab.anurly2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aneurinibacillus aneurinilyticus. ACCESSION No information KEYWORDS No information. SOURCE Aneurinibacillus aneurinilyticus. ORGANISM Aneurinibacillus aneurinilyticus. REFERENCE 1 AUTHORS Meier-Stauffer,K., Busse,H.J., Rainey,F.A., Burghardt,J., Scheberl,A., Hollaus,F., Kuen,B., Makristathis,A., Sleytr,U .B. and Messner,P. TITLE Description of Bacillus thermoaerophilus sp. nov., to include a sugar beet isolate and Bacillus brevis ATCC 12990 JOURNAL Int. J. Syst. Bacteriol. 46, 532-541 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94194|g1313921 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 361 a 370 c 476 g 275 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GA--GAAA-- ---GACC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGCU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GC-GCCAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU--GG GAA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ab.anurlyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aneurinibacillus aneurinilyticus. ACCESSION No information KEYWORDS No information. SOURCE Aneurinibacillus aneurinilyticus. ORGANISM Aneurinibacillus aneurinilyticus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60645 Former RDP Sids: B.aneurino NB: former name Bacillus aneurinolyticus BASE COUNT 342 a 357 c 446 g 267 t 2964 others ORIGIN 1 .......... .......... .......... .........N AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGC---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U UU-U--C-AG ---ACC-(-- --------GC 541 AU-------- -)-GGU---C UG-AA----A GA--GAAA-- ---GACC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| ---GGU--C- A--CGU---- 661 ----ACAG-- AUN---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-CUUG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-A----- ---------- 1681 -(CUC-CA)A ---------- ---------- ---------- --------UC -CUCAG-UGC 1741 CG--CA---- --NN-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCU 1981 -CCU-A--(- GAGA-)-UAG -G-AGCU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGC-NG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAN-N-NC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAACG GGC-A-G-C- CA-ACU-C(G 2881 -CGA)GAGU- ---------- GN-GCCAA-U CCCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thaeroph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermoaerophilus str. L420-91 DSM 10154. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermoaerophilus str. L420-91 DSM 10154. ORGANISM Bacillus thermoaerophilus. REFERENCE 1 AUTHORS Meier-Stauffer,K., Busse,H.J., Rainey,F.A., Burghardt,J., Scheberl,A., Hollaus,F., Kuen,B., Makristathis,A., Sleytr,U .B. and Messner,P. TITLE Description of Bacillus thermoaerophilus sp. nov., to include a sugar beet isolate and Bacillus brevis ATCC 12990 JOURNAL Int. J. Syst. Bacteriol. 46, 532-541 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10154 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94196|g1313931 isolate_name= L420-91 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 353 a 376 c 485 g 271 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ....AG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C C----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CUGU---A -CGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AGG---- ---------- ---------A UG-C--C-GA ---ACC-(-- --------GC 541 AU-------- -)-GGU---U CG-GC----A UG--GAAA-- ---GGCC--- ---------- 601 --(------- ---UUU---- ---)------ ---------| --GAGC--C- G--CGU---- 661 ----ACAG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--UCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACCG-CC --GGG-A--( -----UGACC ---------) --UC-CC-GG 1081 ---------- -------U-C U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CAG---GUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-UCUG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-AG---- ---------- 1681 -(-UC-CA)C ---------- ---------- ---------- -------CUC -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CCC 1981 -UCC-A--(- GAGA-)-UGG -A-GGUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 UG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --UC(-GA-C AA)-GAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG GGCGU-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCCAA-U CCCUA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Oxl.oxalic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oxalophagus oxalicus. ACCESSION No information KEYWORDS No information. SOURCE Oxalophagus oxalicus. ORGANISM Oxalophagus oxalicus. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77840|g572656 Former RDP Sids: C.oxalicum BASE COUNT 380 a 350 c 481 g 297 t 2868 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G UAUGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUUA UAC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGA---U -AGAC-U-GG 421 -GAU-AA-CU U--------- ------GG-- G(-GAAA-)C -UCAA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-U CA-U--U-G- ---ACU-(-- --------GC 541 CU-------- -)-GGU---- CG-AU----G AU-GGAAA-- ---GUC---- ---------- 601 --(------- --UGAAC--- ---)------ ---------| ----GA--C- A--CUA---- 661 ----UCGG-- AU------|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAG-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAC-CC --GGG-AG-( -----AGGA- ---------) -AUC-CC-GG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GN -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GCCA-UUGG A-AAC-UGGU A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCCG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-NNG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-UG-CGG -GG-GU---- ---------- 1681 -(GAC-CA)- ---------- ---------- ---------- -------ACC -CUCGG-UGC 1741 UG--UC---- --CG-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----CGA 1981 -UCU-A--(- GAGA-)-UAG -G-UCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG GGC-U-G-C- AA-GC--A(G 2881 -CGA)UGGU- ---------- AA-GCUAA-U CUCAG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.6 MRC.HALOPHILUS_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.6 MRC.HALOPHILUS_ISOLATE. ORGANISM 2.16.8.6 MRC.HALOPHILUS_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrc.haloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinococcus halophilus. ACCESSION No information KEYWORDS No information. SOURCE Marinococcus halophilus. ORGANISM Marinococcus halophilus. REFERENCE 1 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their relationships to members of the genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62171 BASE COUNT 349 a 358 c 465 g 263 t 2941 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCC-GG (--CGGA--- ---------- ---------- 241 -----GGAAA -)CC-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CGGA---C -UGAU-G-GG 421 -AAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-CA 481 AU-ACG---- ---------- -------C-C CU-G--A-CC ---UCG-(-- --------CC 541 UG-------- -)-AGG---- UC-AG----C GG--UAAA-- ---GCAGGGA UC-------- 601 --(------- ---UUCG--- ---)------ -------GA| UCCUUG--C- A--CAG---- 661 ----UCCG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAG-GG) -C-UCCCC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCAU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGU|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GA-CA 1021 --GG-GAA-- GA-ACCC-AC --GUG-AGU( C----GANCA -----G---) GCUG-GC-GU 1081 ---------- -------G-N U-GA-CGGU- A-CCU-G-UC C-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- ACG-CAG-GC -G|-GU-UU- 1261 C-GU-CAG|U CCG---AUGU G-ACA-GG-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GCCA-UUGG A-AAC-UGCG A-AACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AC CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CGUAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-UC-UUG ACA-UC|--- ---------U ---UCCC--- -UA----CGC 1981 -CUC-G--(- AGAG-)-AGG -C-NNUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--A| CGG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CU-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGA-U-GG -UA--CAANG GGA-U-G-C- GA-AGC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCAGA-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.7 SPOROLACTOBACILLUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.7 SPOROLACTOBACILLUS_GROUP. ORGANISM 2.16.8.7 SPOROLACTOBACILLUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.laevi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus laevis str. M-114 IAM 12388. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus laevis str. M-114 IAM 12388. ORGANISM Sporolactobacillus laevis. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16286|g457668 isolate_name= M-114 BASE COUNT 376 a 345 c 464 g 295 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CCCN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------C-C CC-U--G-C- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- GC-AG----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-AUGA-GU --AUG-AGA( G----GAAA- -----U---) GCUU-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AUG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -NCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGCU-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.laevi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus laevis str. M-103 IAM 12387. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus laevis str. M-103 IAM 12387. ORGANISM Sporolactobacillus laevis. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16285|g457667 isolate_name= M-103 BASE COUNT 373 a 344 c 467 g 296 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----UGG-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------C-C CC-U--G-C- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- GC-AG----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAN-GG) -C-CCACC-A A|-GAC-NG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-AUGA-GU --AUG-AGA( G----GAAA- -----U---) GCUU-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AUG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -NCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGCU-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.racmi5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus racemicus str. M-17 IAM 12396. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus racemicus str. M-17 IAM 12396. ORGANISM Sporolactobacillus racemicus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16291|g457673 isolate_name= M-17 BASE COUNT 376 a 345 c 464 g 297 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------C-C CC-U--G-C- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- GC-AG----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-AUGA-GU --AUG-AGA( G----GAAA- -----U---) GCUU-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AUG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGCU-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.racmi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus racemicus str. M-16 IAM 12395. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus racemicus str. M-16 IAM 12395. ORGANISM Sporolactobacillus racemicus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16290|g457672 isolate_name= M-16 BASE COUNT 376 a 350 c 464 g 290 t 2896 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---NAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAC-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CC-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-AG----G GC-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAN-GG) -C-CCACC-A A|-GAC-UG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGU-GC --GGG-AGA( G----GAAA- -----U---) GCUC-UU-GC 1081 ---------- -------A-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUA-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.racmi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus racemicus str. M-116 IAM 14264. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus racemicus str. M-116 IAM 14264. ORGANISM Sporolactobacillus racemicus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16289|g457671 isolate_name= M-116 BASE COUNT 378 a 351 c 463 g 289 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---NAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAC-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CC-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-AG----G GC-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGU-GC --AGG-AGA( G----GAAA- -----U---) GCUC-UU-GC 1081 ---------- -------A-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUA-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lvolacti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus laevolacticus str. M-8 IAM 12321 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus laevolacticus str. M-8 IAM 12321 (T). ORGANISM Bacillus laevolacticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16270|g457647 IAM 12321 (T) = ATCC 23492 = NCIMB 10269 = JCM 2513 = DSM 442 isolate_name= M-8 BASE COUNT 378 a 350 c 463 g 292 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---NAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-C-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCG-AGA( G----GAAA- -----U---) GCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lvolact4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus laevolacticus str. M-14 IAM 12318. ACCESSION No information KEYWORDS No information. SOURCE Bacillus laevolacticus str. M-14 IAM 12318. ORGANISM Bacillus laevolacticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16278|g457640 Former RDP Sids: B.racemil2 IAM 12318 = JCM 2517 = DSM 444 = ATCC 23496 = NCIMB 10274 (T ) isolate_name= M-14 NB: former name Bacillus racemilacticus BASE COUNT 378 a 350 c 464 g 292 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-C-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCG-AGA( G----GAAA- -----U---) GCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lvolact2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus laevolacticus str. M-1 IAM 12322. ACCESSION No information KEYWORDS No information. SOURCE Bacillus laevolacticus str. M-1 IAM 12322. ORGANISM Bacillus laevolacticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16269|g457646 isolate_name= M-1 BASE COUNT 374 a 351 c 464 g 295 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----CGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-C-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-UG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCG-AGA( G----GAAA- -----U---) GCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(-UU-CC)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lvolact3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus laevolacticus str. M-14 NCIMB 10274 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus laevolacticus str. M-14 NCIMB 10274 (T). ORGANISM Bacillus laevolacticus. REFERENCE 1 AUTHORS Ash,C.A., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic relationships of thermoactinomyces and thermophilic spore-forming bacilli as revealed by comparative analysis of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62179|g506977 (bases 6 to 1431) Former RDP Sids: B.racemila NCIMB 10274 (T) = JCM 2517 = DSM 444 = ATCC 23496 = IAM 12318 isolate_name= M-14 NB: former name Bacillus racemilacticus BASE COUNT 354 a 336 c 434 g 282 t 2970 others ORIGIN 1 .......... .......... .......... .......... ....UU(N-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----NGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGAAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-C-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-N----N- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GACAUG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCG-AGA( G----GAAA- -----U---) GCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCANC CNCGGUA-A) U-A-C-GUAG |-GNGG-C-- 1201 AAG-CGUUNU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCN-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUNU N-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GNG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-NUNA A--UG-CU-- -------A|G -GU-GU-NNG -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAN 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--NC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.myxolac2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus myxolacticus str. M-105 IAM 12326. ACCESSION No information KEYWORDS No information. SOURCE Bacillus myxolacticus str. M-105 IAM 12326. ORGANISM Bacillus myxolacticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16274|g457651 isolate_name= M-105 BASE COUNT 376 a 350 c 465 g 293 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----U -----CGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---C -AGAU-C-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GG----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-AG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCG-AGA( G----GAAA- -----U---) GCUC-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUU-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.laevi4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus laevis str. M-18 IAM 14263. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus laevis str. M-18 IAM 14263. ORGANISM Sporolactobacillus laevis. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16287|g457669 isolate_name= M-18 BASE COUNT 375 a 350 c 466 g 292 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---C -AGAC-U-GG 421 -GAU-AA-CU G--------- ------UG-- G(-GAAA-)C -CGCA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UC-U--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-AG----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-CG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-UG 1021 --GA-GAA-- GA-ACGA-GU --GCU-AGA( G----GAAA- -----U---) GCUA-GU-GC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-A-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-ACG- 1321 -GUCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUU-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCUAA-U CCCAU-AAAG -CC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-AG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACU-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.inulin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus inulinus. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus inulinus. ORGANISM Sporolactobacillus inulinus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58838 ATCC 15538 = NCIMB 9743 (T) = DSM 20348 BASE COUNT 378 a 361 c 477 g 302 t 2858 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~CUUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----NNG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CNN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UN--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-G-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CU-C--G-C- ---ACC-(-- --------GC 541 NU-------- -)-GGU---- GC-GA----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-CG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGA-GU --GCC-AGA( G----GAAA- -----U---) GCUG-GU-GC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUN-GCG(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-NAG -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- AA-GCCAA-U CCCAU-AAAG -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGU-G-GG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- ANN-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.inuli3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus inulinus. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus inulinus. ORGANISM Sporolactobacillus inulinus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16284|g457666 BASE COUNT 376 a 350 c 468 g 289 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NGAC---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-N-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GA----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GAC-CG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGA-GU --GCC-AGA( G----GAAA- -----U---) GCUG-GU-GC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- AA-GCGAA-U CCCAU-AAAG -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGU-G-GG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.inuli2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus inulinus. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus inulinus. ORGANISM Sporolactobacillus inulinus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16283|g457665 BASE COUNT 376 a 350 c 468 g 287 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-N-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GA----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAN-GG) -C-CCACC-A A|-GAC-CG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGA-GU --GCC-AGA( G----GAAA- -----U---) GCUG-GU-GC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -NCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- AA-GCCAA-U CCCAU-AAAG -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGU-G-GG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.racmi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus racemicus str. M-86 IAM 12384. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus racemicus str. M-86 IAM 12384. ORGANISM Sporolactobacillus racemicus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16288|g457670 isolate_name= M-86 BASE COUNT 376 a 350 c 468 g 288 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAC---- --G|-UG--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-N-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CU-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GC-GA----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCCAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-CG-GG-( GU-AAN-GG) -C-CCACC-A A|-GAC-CG- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GC-CG 1021 --GA-GAA-- GA-ACGA-GU --GCC-AGA( G----GAAA- -----U---) GCUG-GU-GC 1081 ---------- -------U-G U-GA-CGGU- A-UCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -UCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CAA)GGUC- ---------- AA-GCCAA-U CCCAU-AAAG -CC-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGU-G-GG -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.racemil3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus racemilacticus str. M-5 IAM 12319. ACCESSION No information KEYWORDS No information. SOURCE Bacillus racemilacticus str. M-5 IAM 12319. ORGANISM Bacillus racemilacticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16279|g457641 isolate_name= M-5 NB: IAM 12319=ATCC 23497? BASE COUNT 383 a 340 c 468 g 301 t 2884 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----G -----GAAGC AAAACAAU-- ---------- ---------- ---------- 181 ---------- ---------- --------CC (--UU----- ---------- ---------- 241 --------CG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGCGUUU UGUGGA---- --A|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-G-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 GU-AAU---- ---------- -------C-U UU-U--G-C- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- GC-AA----G GG-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UCU---- ---)------ ---------| -GCCAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUAG-GU --AUC-AUA( G----GAAA- -----U---) GAUG-GU-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CAG-C(- UC-A)A-CUG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUA-----CA G-AA-GAGGA GAG-U|AGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UA- -GG-GG---- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAG 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUCC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GGGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76442|g498802 BASE COUNT 380 a 352 c 470 g 300 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-C -UGC-CU--A AUAC-AUCCA A-GUC-GAGC 121 G--GA----C -----CAAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAG---- --G|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-A AA-A--G-A- ---CCU-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----U UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-NG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAA- -----G---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)N ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAG-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76439|g498799 BASE COUNT 378 a 353 c 470 g 305 t 2870 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-C GU-U--C-C- ---ACC-(-- --------UC 541 AU-------- -)-GGU---- GG-AG----C GG-UAAAA-- ---GAUGGC- ---------- 601 --(------- --CUCUG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( U----GAAUA -----A---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-AAC-C(G 2881 -CGA)GGUU- ---------- GA-GCGAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76444|g498804 BASE COUNT 375 a 366 c 486 g 294 t 2855 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----G -----GAAAC AGGCUGAU-- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUGCC UGUGGA---- --A|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---C -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GAN---- ---------- -------C-A GA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----C UG-UAAAA-- ---GUUGGGA ---------- 601 --(------- --CUUGU--- ---)------ ---------| UCCUAA--C- A--CUG---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCAU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGU|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAC-GU --GCC-GUU( C----GAACA -----G---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-UCA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- AA-AGC-C(G 2881 -CGA)GGCC- ---------- GA-GCGAA-U CCCAU-AAAG -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76445|g498805 BASE COUNT 379 a 356 c 484 g 300 t 2857 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----G -----GAAGC CGGCGGAU-- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAANCC GGUGGA---- --A|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUG---U -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GAU---- ---------- -------C-A UU-U--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CC-GA----A UG-UAAAA-- ---GUGGGGA ---------- 601 --(------- ---UUUA--- ---)------ ---------| UCCUCA--C- A--CUG---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCAU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGU|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-AU-GA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GUCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG --G-GG---- -U-------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACC 1981 -UCU-G--(- GAGA-)-CAG -A-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGC-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GN-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.vedderi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus vedderi str. JaH. ACCESSION No information KEYWORDS No information. SOURCE Bacillus vedderi str. JaH. ORGANISM Bacillus vedderi. REFERENCE 1 AUTHORS Agnew,M.D., Koval,S.F. and Jarrell,K.F. TITLE Isolation and characterization of novel alkaliphiles from bauxite-processing waste and description of Bacillus vedderi sp. nov., a new obligate alkaliphile JOURNAL Syst. Appl. Microbiol. 18, 221-230 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z48306|g669063 isolate_name= JaH BASE COUNT 369 a 352 c 462 g 294 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----U -----CA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAAG---- --A|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---C -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-GAC---- ---------- -------C-N CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----U UG-UAAAA-- ---GUUGGGA ---------- 601 --(------- ---UUUA--- ---)------ ---------| UCCUAA--C- A--CUG---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCAU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGU|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AUAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----UA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 CCU--AC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -CC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- AA-AGC-C(G 2881 -CGA)GGCC- ---------- GA-GCGAA-U CCCAU-AAAG -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-GC-AC-CG A-AGGU-GGG ACA-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76448|g498808 BASE COUNT 381 a 346 c 470 g 307 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGA---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A AA-G--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UC-UU----U UG-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----NGGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GUCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-A-GGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.alcalop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus alcalophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus alcalophilus. ORGANISM Bacillus alcalophilus. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze ,D. TITLE the genus Bacillus Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76436|g498795 DSM 485 (T) = NCTC 4553 = NCIMB 8772 = NCIMB 10436 = ATCC 27647 BASE COUNT 382 a 346 c 469 g 305 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGA---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGN- CAA--CCU-G C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A AA-G--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UC-UU----U UG-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----NGGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GNU( C----GAAUA -----G---) GUCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-A-GGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.alcaloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus alcalophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus alcalophilus. ORGANISM Bacillus alcalophilus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60603 DSM 485 (T) = NCTC 4553 = NCIMB 8772 = NCIMB 10436 = ATCC 27647 BASE COUNT 360 a 333 c 437 g 295 t 2951 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AGA---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-A CA-G--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UC-UU----U UG-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----ACAG-- AU----G-|G CCUGC----- -GG|----CG C--UUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GUCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-A-GGG- 1321 -GUCA-UUGG A-AAC-UGGG A-G-CUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCNCGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UNG -A-GCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp12 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76449|g498809 BASE COUNT 390 a 351 c 471 g 306 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---U -AGAC-U-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-G AA-G--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-CU----U CA-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AGA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UA-U CG-GGG-C(- UC-A)A-CCC -CG-A-GGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CUUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- AA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACC... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76446|g498806 BASE COUNT 373 a 359 c 470 g 302 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GAC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CG UUUUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCANA AACG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U CU-A--G-C- ---ACC-(-- --------UC 541 CU-------- -)-GGU---- GC-CG----G AU-UAAAA-- ---GAGGGC- ---------- 601 --(------- ---UUCUU-- ---)------ ---------| -GCUCU--C- A--CGA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GNC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-AU-GA 1021 --GG-GAA-- GA-ACAC-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG A-GGCUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CGUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76443|g498803 BASE COUNT 373 a 359 c 470 g 302 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GAC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CG UUUUUGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCANA AACG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -CGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U CU-A--G-C- ---ACC-(-- --------UC 541 CU-------- -)-GGU---- GC-CG----G AU-UAAAA-- ---GAGGGC- ---------- 601 --(------- ---UUCUU-- ---)------ ---------| -GCUCU--C- A--CGA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCCCC-A A|-GNC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-AU-GA 1021 --GG-GAA-- GA-ACAC-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG A-GGCUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CGUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76440|g498800 BASE COUNT 373 a 360 c 476 g 292 t 2875 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GNNC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUACA A-GUC-GAGC 121 G--GA----N -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --N|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---U -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C CU-U--U-C- ---UCC-(-- --------AC 541 CU-------- -)-GGA---- GA-GA----G GG-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAA-- GA-AGCG-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG G-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CGUAG-UGC 1741 CG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GC -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GG-CU A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76441|g498801 BASE COUNT 380 a 357 c 472 g 293 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- --G|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCCU---U -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACG-GG 481 AU-AAU---- ---------- -------A-G AG-A--G-A- ---AUC-(-- --------AC 541 CU-------- -)-GAU---- UC-UC----U UU-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUA---- 661 ----AGGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGC( G----UAAC- -----U---) ACCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CGUAG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76438|g498798 BASE COUNT 380 a 351 c 470 g 302 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- --G|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCCU---U -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C UU-U--U-U- ---CCU-(-- --------AC 541 CU-------- -)-GGG---- AG-AA----A GU-UAAAA-- ---GAUGGC- ---------- 601 --(------- --CUUUGU-- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----GGGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GGU( U----GAAUA -----A---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-GGG-C(- UC-A)A-CCC -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG A-AGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GU---- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- -------GCC -CGUAG-UGC 1741 CG--AA---- --GU-(AAA- ---C)A-CA- UUAN-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAU A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUNA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8 B.MEGATERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8 B.MEGATERIUM_GROUP. ORGANISM 2.16.8.8 B.MEGATERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.1 B.METHANOLICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.1 B.METHANOLICUS_SUBGROUP. ORGANISM 2.16.8.8.1 B.METHANOLICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.kaustoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus kaustophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus kaustophilus. ORGANISM Bacillus kaustophilus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60618 BASE COUNT 334 a 362 c 479 g 250 t 2951 others ORIGIN 1 .......... .......... .......... .........N NGAGUU(U-G A)U-CCU|-C 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC AAAUCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GN-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AN G-AG--NAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAN |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.caldolyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus caldolyticus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus caldolyticus. ORGANISM Bacillus caldolyticus. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26924|g511094 BASE COUNT 355 a 384 c 513 g 257 t 2867 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC AAAUCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ----UUU--- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-NC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGNAC 1801 GGC-C---(N CAA)---G-G NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCN-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGNG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thleovor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermoleovorans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermoleovorans. ORGANISM Bacillus thermoleovorans. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26923|g511109 BASE COUNT 356 a 386 c 517 g 259 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC AAAUCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ----UUU--- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G AC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.caldoten 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus caldotenax. ACCESSION No information KEYWORDS No information. SOURCE Bacillus caldotenax. ORGANISM Bacillus caldotenax. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26922|g511093 BASE COUNT 354 a 387 c 519 g 261 t 2855 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC AAAUCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ----UUU--- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAN-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.caldote2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus caldotenax. ACCESSION No information KEYWORDS No information. SOURCE Bacillus caldotenax. ORGANISM Bacillus caldotenax. REFERENCE 1 AUTHORS Ash,C.A., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic relationships of thermoactinomyces and thermophilic spore-forming bacilli as revealed by comparative analysis of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62180|g506524 (bases 6 to 1454) BASE COUNT 333 a 361 c 477 g 249 t 2956 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CCA AAUCGGA-NG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGGU UNUGG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CN-GA-A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCU ---------- 601 --(------- ----UUNG-- ---)------ ---------| GCNUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)NGGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAANG A----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CNCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UN- 1261 C-UU-AAG|U CUNNNNAUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 CNCA-A--(- GAGA-)-UUG -G-GCGN--- UU-------- --NNC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GGNUGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--NCU- 2281 AG--UUGC-C AG-CANN--- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGNAGG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GNAACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAAAAANG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.caldovel 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus caldovelox. ACCESSION No information KEYWORDS No information. SOURCE Bacillus caldovelox. ORGANISM Bacillus caldovelox. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26925|g511095 BASE COUNT 354 a 390 c 514 g 257 t 2861 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 NCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GGAUCGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-CCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGCCC ---------- 601 --(------- ----UUU--- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-NC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---C(---GA ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAN-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thcatenu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermocatenulatus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermocatenulatus. ORGANISM Bacillus thermocatenulatus. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26926|g511110 BASE COUNT 354 a 390 c 519 g 258 t 2855 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GNACGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCAU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ----UUU--- ---)------ ---------| GGCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GU-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GGCUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GC -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GNAC C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.stearT10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus stearothermophilus str. T10. ACCESSION No information KEYWORDS No information. SOURCE Bacillus stearothermophilus str. T10. ORGANISM Bacillus stearothermophilus. REFERENCE 1 AUTHORS Fox,G.E. and Rossler,D. TITLE 16SRNA sequencing studies Phylogenetic diversity in the genus Bacillus as seen by JOURNAL Syst. Appl. Microbiol. 14, 266-269 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X57309 isolate_name= T10 BASE COUNT 354 a 381 c 510 g 262 t 2869 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CCA AAAUC-G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUGAU UU-GG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG--C-(GAA A)-G-C-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGG-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGU-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 NC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GC -AA-CCC--- ---------- ---------- -----(---- -NNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.stearoth 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus stearothermophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus stearothermophilus. ORGANISM Bacillus stearothermophilus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE by comparative analysis of small subunit ribosomal RNA sequences Phylogenetic heterogeneity of the genus Bacillus revealed JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60640 NCDO 1768 = ATCC 12980 BASE COUNT 311 a 355 c 461 g 246 t 3003 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GNAUUAG-GG (--CU----- ---------- ---------- 241 --------NN -)CC-UUNAU UCGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGCG-GNGG- 361 -A-CG-GG-U GAGU---AAN -NC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-NGU---- NU-UN----N GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ---UUUG--- ---)------ ---------| GGCUNU--C- A--CUN---- 661 ----GCNG-- AUN---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UNA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UN-CG --)GG-UCGU NAA--GCUN| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( C----GAAGA -----G---) GGCG-GN-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC NGCGGUN-A) U-A-C-GUAG |-GGNG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-CU- 1261 C-UN-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UNGG G-NACUU-GA GGG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUN-GCG(-G UGAAA)-UGC -GU-NGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AC CUNACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --NC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GNGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----NA---| CAG-GG-UGA |---C|N--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-N A-CU-G-CCG --GC(-GA-C NA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CNAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCNGUUCGGA 2941 U-UGCAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thdenitr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermodenitrificans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermodenitrificans. ORGANISM Bacillus thermodenitrificans. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26928|g511111 BASE COUNT 358 a 379 c 507 g 264 t 2868 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GAACGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CA-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( U----GAAUA -----A---) GGCG-GC-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UNC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-ANU A-U-GU-GGU -UUAANN-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-NUG -G-GCGN--- NC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.denitrif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus denitrificans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus denitrificans. ORGANISM Bacillus denitrificans. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26927|g511097 BASE COUNT 358 a 380 c 506 g 268 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GAACGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUGU UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCGC---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CA-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGCC ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----GCGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GG-GAC-- GA-AGGA-GC --GCC-GUU( U----GAAUA -----A---) GGCG-GN-GC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-C-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(N CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCA-A--(- GAGA-)-UUG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GG-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.spAk1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp. str. Ak1. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. str. Ak1. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Maciver,B.B., McHale,R.R.H., Saul,D.J. and Bergquist,P.L. TITLE Cloning, sequencing and expression in Escherichia coli of a serine protease from a thermophilic Bacillus species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L29507|g529978 isolate_name= Ak1 BASE COUNT 357 a 376 c 505 g 271 t 2867 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GGGCGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGC UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-UU----G GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ---GCGG--- A---UGG-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AGAA-GU --GCC-GUU( C----GAACA -----G---) GGCG-GC-AC 1081 ---------- -------G-G U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(GUU-AU)- ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-- CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-G--(- GAGA-)-CAG -G-GCGU--- UC-------- CUCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGAG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-CC--CCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GG-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thglucos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermoglucosidasius str. KP 1006 ATCC 43742 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermoglucosidasius str. KP 1006 ATCC 43742 (T). ORGANISM Bacillus thermoglucosidasius. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43742 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60641 ATCC 43742 (T) = DSM 2542 isolate_name= KP 1006 NB: former name Bacillus thermoglucosadicus BASE COUNT 313 a 347 c 452 g 249 t 3015 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC GGGCGGG-AG (--CU----- ---------- ---------- 241 --------U- -)CU-UCCGC UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UNAUACC-GN 481 AU-AAC---- ---------- -------A-C CG-A--A-G- ---ACC-(-- --------GC 541 AU-------- -)-NGU---- NU-UA----G GU-NGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNC--C- A--CUA---- 661 ----ACGG-- AUN---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU NAA--GCUN| UGUU-GU-UN 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAACN -----G---) GGCG-GN-AC 1081 ---------- -------G-G U-GA-CGGU- N-CCU-N-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-N-- 1201 NAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UN-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-NACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-N-AUGA G--UG-CU-- -------N|N -GU-GU-UAG -AG-GGG--- ---------- 1681 -(-UU-AU)- ---------- ---------- -U-------- -------CCC -UNUAG-UGC 1741 UG--UA---- --NN-(UNA- ---C)G-CG- UNAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-G--(- GAGA-)-CAG -G-GNGU--- UC-------- --UCC----- --(UUG---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGAG------ ----NA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACNC-UC-G |-CC--NCU- 2281 NG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GN-N A-CU-G-CCG --GC(-UN-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACN-CA-C GUG--CUACA AUGGG-C-GG -UA--CNNAG GGC-U-N-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CCCAA-AAAG -CC-G-CUC- UCNGUUCGGA 2941 U-UGCAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -NGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sac.thmop2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharococcus thermophilus str. 657 ATCC 43125 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharococcus thermophilus str. 657 ATCC 43125 (T). ORGANISM Saccharococcus thermophilus. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE Phylogenetic evidence for the relationship of Saccharococcus thermophilus to Bacillus stearothermophilus JOURNAL Syst. Appl. Microbiol. 16, 224-226 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43125 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70430|g535100 ATCC 43125 (T) = CCM 3586 isolate_name= 657 BASE COUNT 367 a 385 c 500 g 283 t 2841 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----CGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGUUC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A----G- ---ACC-(-- --------GC 541 AU-------- -)--GU---- CU-UC----G G--UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUNG--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----ACGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCHC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-G U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G--CGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CA--GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCC-A-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUGACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sac.thmoph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Saccharococcus thermophilus str. 657 ATCC 43125 (T). ACCESSION No information KEYWORDS No information. SOURCE Saccharococcus thermophilus str. 657 ATCC 43125 (T). ORGANISM Saccharococcus thermophilus. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE Phylogenetic evidence for the relationship of Saccharococcus thermophilus to Bacillus stearothermophilus JOURNAL Syst. Appl. Microbiol. 16, 224-226 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43125 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09227 ATCC 43125 (T) = CCM 3586 isolate_name= 657 BASE COUNT 367 a 385 c 500 g 283 t 2841 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----CGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGUUC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCGU---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A----G- ---ACC-(-- --------GC 541 AU-------- -)--GU---- CU-UC----G G--UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUNG--- ---)------ ---------| -UCUGU--C- A--CUU---- 661 ----ACGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCHC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-G U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G--CGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CA--GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCC-A-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GC-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)GG UGCGGC--UG GAUGACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.flavthrm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus flavothermus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus flavothermus. ORGANISM Bacillus flavothermus. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26932|g511098 BASE COUNT 373 a 369 c 493 g 285 t 2856 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCNG-GAC -GAAC-GC-- UGNC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CG AAUCGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA UUCG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---U -AGAC-G-GG 421 -GAU-AA-CA C--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C GA-A--A-U- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- GU-UU----C GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AGC-GUA( G----UAAC- -----U---) GGCG-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------CCC -UUUAG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCG-A--(- GAGA-)-UCG -G-GCGU--- UC-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UC-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGU-U-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAA-AAAG -CC-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAN-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26929|g511102 BASE COUNT 372 a 371 c 492 g 282 t 2859 others ORIGIN 1 .......... .......... .......... .......... ......(... .)....U|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----A---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UC----G GU-UGAAA-- ---GGCGGCU ---------- 601 --(------- ----UUU--- ---)------ ---------| AGCUGU--C- A--CUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-CGG-C(- UC-A)A-CCG -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-GA-GAGGG GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UC G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thalkalp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermoalkalophilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermoalkalophilus. ORGANISM Bacillus thermoalkalophilus. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26931|g511106 BASE COUNT 369 a 370 c 482 g 283 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GNC -GNUANCC-- UGGC-GGC-G -UUC-CU--A ANAC-AUUCA A-GUC-GANC 121 G--GA----C C----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --NAGGG-AG (--CU----- ---------- ---------- 241 --------U- -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----A---- -GG|-UU--- AACG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-N C-CCUN---C -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-A--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UC----G GU-UGAAA-- ---GGCGGCU ---------- 601 --(------- ----UUU--- ---)------ ---------| AGCUGU--C- A--CUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-CGG-C(- UC-A)A-CCG -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-GA-GAGGG GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GN--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GGGG------ ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GC(-UA-N AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pallidus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pallidus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pallidus. ORGANISM Bacillus pallidus. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26930|g511101 DSM 3670 (T) = ATCC 51176 BASE COUNT 372 a 372 c 491 g 281 t 2860 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----A----- -GG|-UU--- AACG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-C CG-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UC----G GU-UGAAA-- ---GGCGGCU ---------- 601 --(------- ----UUU--- ---)------ ---------| AGCUGU--C- A--CUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-CGG-C(- UC-A)A-CCG -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-GA-GAGGG GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UC G-)------- GG-------- ----GA---| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GC(-UA-A AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAA-AAAA -CC-A-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.smithii3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus smithii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus smithii. ORGANISM Bacillus smithii. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78316|g1088409 BASE COUNT 342 a 344 c 449 g 270 t 2971 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU UUCAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUUG AAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- GCA--ACU-G C-CUGC---A -GGAC-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U CU-U--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AA----G GU-UGAAA-- ---GGCGGN- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGC--C- G--CUU---- 661 ----GNAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGN-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CCCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GGGGAA-- GA-ACAA-GU --ACC-GCU( C----GAACA -----G---) GGNG-GN-AC 1081 ---------- -------C-U U-GA-CGGN- A-CCU-G-AC C-AG--AAAG ---------N 1141 -CACNGUU-A NCUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUNG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGANA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AN CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGN-GA- 1561 GC-GAA-CA- -GN(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UN-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGN-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUACUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCG--- -CU----ACC 1981 -UCU-A--(- GAGA-)-UAG -A-GGGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAN -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UU-G |-AN--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCN --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-NUC 3001 GN-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.smithii2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus smithii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus smithii. ORGANISM Bacillus smithii. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26935|g511104 BASE COUNT 372 a 370 c 491 g 290 t 2853 others ORIGIN 1 .......... .......... .......... .......... ......(... .)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU UUCAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUUG AAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGC---A -AGAC-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U CU-U--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AA----G GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGC--C- G--CUU---- 661 ----GCAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGC|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUANUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCG--- -CU----ACC 1981 -UCU-A--(- GAGA-)-UAG -A-GGGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.smithii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus smithii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus smithii. ORGANISM Bacillus smithii. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60643 BASE COUNT 346 a 342 c 440 g 267 t 2981 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU UUCAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUUG AAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGC---A -AGAC-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U CU-U--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AA----G GU-UGAAA-- ---G-CG--- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --CUGC--C- G--CUU---- 661 ----GCAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUN| UNUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-NC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUNU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UN-NAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUN-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCG--- -CU----ACC 1981 -UCU-A--(- GAGA-)-UAG -A-GGGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AC--NUN- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NNNAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 NCACNGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.infernus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus infernus str. TH-22 (=SMCC/W 478). ACCESSION No information KEYWORDS No information. SOURCE Bacillus infernus str. TH-22 (=SMCC/W 478). ORGANISM Bacillus infernus. REFERENCE 1 AUTHORS Boone,D.R., Liu,Y., Zhao,Z., Balkwill,D.L., Drake,G.R., Stevens,T.O. and Aldrich,H.C. TITLE Bacillus infernus sp. nov., an Fe(III)- and Mn(IV)-reducing anaerobe from the deep terrestrial subsurface JOURNAL Int. J. Syst. Bacteriol. 45, 441-448 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20384|g668995 (bases 1 to 1508) complement isolate_name= TH-22 (=SMCC/W 478) BASE COUNT 372 a 370 c 477 g 286 t 2871 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GGGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------C GAGUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA UCG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- ANCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU U--------- ------GC-- G(-GAAA-)C -GUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-U CC-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----G AC-UGAAA-- ---GACGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAACU -----G---) CCGG-U--AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UN--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAU 1981 -CCU-G--(- GAGA-)-CAG -G-ACCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AG--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-CU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAUG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UC-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGA ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.infernu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus infernus str. TH-23 (=SMCC/W 479). ACCESSION No information KEYWORDS No information. SOURCE Bacillus infernus str. TH-23 (=SMCC/W 479). ORGANISM Bacillus infernus. REFERENCE 1 AUTHORS Boone,D.R., Liu,Y., Zhao,Z., Balkwill,D.L., Drake,G.R., Stevens,T.O. and Aldrich,H.C. TITLE Bacillus infernus sp. nov., an Fe(III)- and Mn(IV)-reducing anaerobe from the deep terrestrial subsurface JOURNAL Int. J. Syst. Bacteriol. 45, 441-448 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U20385|g668996 (bases 1 to 1508) complement isolate_name= TH-23 (=SMCC/W 479) BASE COUNT 371 a 369 c 477 g 286 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GGGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------C GANUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUGA UCG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU U--------- ------GC-- G(-GAAA-)C -GUGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-U CC-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----G AC-UGAAA-- ---GACGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAACU -----G---) CCGG-U--AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAU 1981 -CCU-G--(- GAGA-)-CAG -G-ACCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AG--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-CU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAUG GGC-U-G-C- GA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCAC-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UC-AC-ANCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGA ACA-GA-UG- AUU-GGNG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.methanol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus methanolicus str. C1 NCIMB 13114. ACCESSION No information KEYWORDS No information. SOURCE Bacillus methanolicus str. C1 NCIMB 13114. ORGANISM Bacillus methanolicus. REFERENCE 1 AUTHORS Arfman,N., Dijkhuizen,L., Kirchhof,G., Ludwig,W., Schleifer ,K.H., Bulygina,E.S., Chumakov,K.M., Govorukhina,N.I., Trotsenko,Y.A., White,D. and Sharp,R.J. TITLE Bacillus methanolicus sp. nov., a new species of thermotolerant, methanol-utilizing, endospore-forming bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 439-445 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64465|g297069 (bases 1 to 1549) isolate_name= C1 BASE COUNT 382 a 373 c 491 g 303 t 2827 others ORIGIN 1 .......... .......... .......... ...UUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- -----CUGAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-U GAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UC-U--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AA-AG----A GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------U-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-G--(- GAGA-)-CAG -G-ACGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-U CCCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.methano2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus methanolicus str. C1 NCIMB 13114. ACCESSION No information KEYWORDS No information. SOURCE Bacillus methanolicus str. C1 NCIMB 13114. ORGANISM Bacillus methanolicus. REFERENCE 1 AUTHORS Arfman,N., Dijkhuizen,L., Kirchhof,G., Ludwig,W., Schleifer ,K.H., Bulygina,E.S., Chumakov,K.M., Govorukhina,N.I., Trotsenko,Y.A., White,D. and Sharp,R.J. TITLE Bacillus methanolicus sp. nov., a new species of thermotolerant, methanol-utilizing, endospore-forming bacteria JOURNAL Int. J. Syst. Bacteriol. 42, 439-445 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S42879 isolate_name= C1 BASE COUNT 382 a 374 c 490 g 304 t 2826 others ORIGIN 1 .......... .......... .......... ...UUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- -----CUGAU ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-U GAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UC-U--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---- AA-AG----A GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCC-GU-AC 1081 ---------- -------U-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-G--(- GAGA-)-CAG -G-ACGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAA-U CCCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.2 B.SPOROTHERMODURANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.2 B.SPOROTHERMODURANS_SUBGROUP. ORGANISM 2.16.8.8.2 B.SPOROTHERMODURANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Alb.aciter 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alicyclobacillus acidoterrestris. ACCESSION No information KEYWORDS No information. SOURCE Alicyclobacillus acidoterrestris. ORGANISM Alicyclobacillus acidoterrestris. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60602 Former RDP Sids: B.acidterr NB: former name Bacillus acidoterrestris BASE COUNT 352 a 337 c 440 g 293 t 2954 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCNG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUNC-NUGCN A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU GAUUAAG-AG (--CU----- ---------- ---------- 241 --------GG -)CU-GUUGA UCAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-AG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACU-GG 481 AU-AAC---- ---------- -------U-U UU-C--U-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GA-GA----G AU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GUU( C----GAAUA -----G---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-N-AC C-NG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUC 1981 -CCU-A--(- GAGA-)-UAG -G-GCCU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---UG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sporthe3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sporothermodurans str. M215. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sporothermodurans str. M215. ORGANISM Bacillus sporothermodurans. REFERENCE 1 AUTHORS Pettersson,B., Lembke,F., Hammer,P., Stackebrandt,E. and Priest,F.G. TITLE Bacillus sporothermodurans; a new species producing highly heat resistant endospores JOURNAL Int. J. Syst. Bacteriol. 46, 759-764 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49080 isolate_name= M215; type III isolate_name= M215, type I isolate_name= M215; type II BASE COUNT 374 a 348 c 465 g 310 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UUUCA---- -GA|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AG----A AU-UGAAA-- ---GGUGGC- ---------- 601 --(------- ---ACUA--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUU--- GAC----CUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA-C-| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- UA-GAC-C(G 2881 -CGA)GGUU- ---------- AC-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sporther 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sporothermodurans str. M215. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sporothermodurans str. M215. ORGANISM Bacillus sporothermodurans. REFERENCE 1 AUTHORS Pettersson,B., Lembke,F., Hammer,P., Stackebrandt,E. and Priest,F.G. TITLE Bacillus sporothermodurans; a new species producing highly heat resistant endospores JOURNAL Int. J. Syst. Bacteriol. 46, 759-764 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49078 isolate_name= M215; type III isolate_name= M215, type I isolate_name= M215; type II BASE COUNT 375 a 348 c 466 g 308 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C U----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- -AG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AG----A AU-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UUUAA-- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUU--- GAC----CUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA-C-| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- UA-GAC-C(G 2881 -CGA)GGUU- ---------- AC-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sporthe2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sporothermodurans str. M215. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sporothermodurans str. M215. ORGANISM Bacillus sporothermodurans. REFERENCE 1 AUTHORS Pettersson,B., Lembke,F., Hammer,P., Stackebrandt,E. and Priest,F.G. TITLE Bacillus sporothermodurans; a new species producing highly heat resistant endospores JOURNAL Int. J. Syst. Bacteriol. 46, 759-764 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U49079 isolate_name= M215; type III isolate_name= M215, type I isolate_name= M215; type II BASE COUNT 372 a 348 c 467 g 309 t 2880 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C U----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- -AG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-GG----A AU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUU--- GAC----CUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA-C-| AAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- UA-GAC-C(G 2881 -CGA)GGUU- ---------- AC-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)G. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.PD010892 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Cano,R.J., Borucki,M.K., Higby-Schweitzer,M., Poinar,H.N., Poinar,G.O. and Pollard,K.J. TITLE Bacillus DNA in fossil bees: an ancient symbiosis? JOURNAL Appl. Environ. Microbiol. 60, 2164-2167 (1994) STANDARD No information COMMENTS legacy_attribute= date_source=010892 biol_source= Proplebeia dominicana (abdomen), 23- to 40-MYO NB: data hand entered from paper BASE COUNT 134 a 107 c 168 g 101 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----AAAU- ----AG---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGUU- G-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -AU....... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.oleroniu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus oleronius str. Rt 10 DSM 9356 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus oleronius str. Rt 10 DSM 9356 (T). ORGANISM Bacillus oleronius. REFERENCE 1 AUTHORS Kuhnigk,T., Borst,E.-M., Breunig,A., Koenig,H., Collins,M.D., Hutson,R.A. and Kampfer,P. TITLE Bacillus oleronius sp. nov., a member of the hindgut flora of the termite Reticulitermes santonensis (Feytaud) JOURNAL Can. J. Microbiol. 41, 699-706 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 9356 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82492|g732567 (bases 20 to 1519) isolate_name= Rt 10 BASE COUNT 372 a 348 c 465 g 312 t 2879 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- -GA|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAG---- GG-AG----A AU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGN A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GCCNAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGACGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUU--- GAC----CUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA-C-| AGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-NG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.tamylvor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermoamylovorans str. DKP CIP CNCMI-1378. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermoamylovorans str. DKP CIP CNCMI-1378. ORGANISM Bacillus thermoamylovorans. REFERENCE 1 AUTHORS Combet-Blanc,Y., Ollivier,B., Streicher,C., Patel,B.K.C., Dwivedi,P.P., Pot,B., Prensier,G. and Garcia,J.-L. TITLE Bacillus thermoamylovorans sp. nov., a moderately thermophilic and amylolytic bacterium JOURNAL Int. J. Syst. Bacteriol. 45, 9-16 (1995) STANDARD No information COMMENTS Organism information Culture collection: CIP CNCMI-1378 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27478|g533218 geog_source= Rufisque (20 km E of Dakar), Senegal biol_source= palm wine isolate_name= DKP BASE COUNT 381 a 367 c 489 g 305 t 2834 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC AAUAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUUG UUGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AACG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GG 481 AU-AGA---- ---------- -------U-U AU-C--U-U- ---UCC-(-- --------GC 541 CU-------- -)-GGA---- GA-GA----U AA-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -GCCAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GGA( G----GAAA- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGUG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGN-N---(G CAA)---G-C CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---CCUG--- -AC----CCC 1981 -CCU-G--(- GAGA-)-CAG -G-GUCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-GU--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGC--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GC-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-G(G 2881 -CGA)CGCAU ---------- GA-GCGAA-U CCCAG-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUA.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.D 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. unidentified str. unidentified bacterium D. ACCESSION No information KEYWORDS No information. SOURCE str. unidentified str. unidentified bacterium D. ORGANISM str. unidentified. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58832 Former RDP Sids: L.thermoph isolate_name= unidentified bacterium D NB: former name "Lactobacillus" thermophilus BASE COUNT 358 a 347 c 465 g 287 t 2919 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUACUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GUGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC UUUUAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAA AAGN------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAU-C-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GNAA-)C -CGGN-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------U-U UU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GG-AA----A AA-GGAAA-- ---GACGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACN-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCU-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GC-UG 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAC- -----A---) GGCG-GN-NC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-G-GC U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CN-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGANG-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GG---- ---------- 1681 -(UUU-CC)G ---------- ---------- ---------- -------CCN -NUUAG-UGC 1741 UG--CA---- --GC-(NAA- ---C)G-CA- UUAA-GCACN C|N|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUC 1981 -CCU-G--(- GAGA-)-CAG -G-GNCU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--N| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAG-AAAA -CC-A-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGNNN- NUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.coagulan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus coagulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus coagulans. ORGANISM Bacillus coagulans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60614 NCDO 1761 = IAM 1115 = IAM 12463 = ATCC 7050 (T) = DSM 1 = IFO 12583 = CECT 12 = NCIMB 9365 (T) BASE COUNT 333 a 351 c 446 g 270 t 2976 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-NUGCA A-GUC-GUGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC UUUUAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAA AAGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-N-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-NG 481 AU-AGU---- ---------- -------U-U UU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GG-AA----A AA-GGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ANA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GC-CG 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAACA -----G---) GGCG-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-N-NC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GNAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUNN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GC-UN- 1261 C-UN-NAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCA -AG---CGG- 1321 -U-CN-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGN-NA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUC 1981 -CCU-G--(- GAGA-)-CAG -G-GCCU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- NA-GCCAA-U CCCAG-AAAA -CC-A-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.coagula2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus coagulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus coagulans. ORGANISM Bacillus coagulans. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16267|g457644 IAM 12463 = IAM 1115 = ATCC 7050 (T) = DSM 1 = NCDO 1761 = IFO 12583 = CECT 12 = NCIMB 9365 (T) BASE COUNT 364 a 360 c 472 g 282 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GUGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CC UUUUAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAA AAGG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-N-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-NG 481 AU-AGU---- ---------- -------U-U UU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GG-AA----A AA-GGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GC-CG 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAACA -----G---) GGCG-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CC- --A-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUC 1981 -CCU-G--(- GAGA-)-CAG -G-GCCU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAG-AAAA -CC-A-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAN---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.badius3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus badius. ACCESSION No information KEYWORDS No information. SOURCE Bacillus badius. ORGANISM Bacillus badius. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78310|g1088403 ATCC 14574 = NCDO 1760 BASE COUNT 347 a 355 c 459 g 270 t 2945 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU UGACGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGU UCAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AA-GUGGG- CAA---CU-G C-CUGU---A -AGA--U-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-AG 481 AU-AGU---- ---------- -------U-U UU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GG-AA----A AA-GGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GGG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GC-CG 1021 --GG-GAA-- GA-ACAA-GU --GCC-GNN( C----GAACA -----G---) NGCG-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-G-GN C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUC 1981 -CCU-G--(- GAGA-)-CAG -G-GUCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-GUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AC--CUU- 2281 AG--GUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-C-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAG-AAAA -CC-A-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCUUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.coagula3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus coagulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus coagulans. ORGANISM Bacillus coagulans. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78313|g1088406 BASE COUNT 345 a 352 c 452 g 269 t 2958 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GUGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-UU (--UU----- ---------- ---------- 241 --------AA -)AA-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- GCA--ACU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CG C--------- ------CG-- G(-GAGA-)C -CGGG-G--C UAAUACC-AG 481 AU-AGU---- ---------- -------U-U UU-U--C-C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GG-AA----A AA-GGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-AG) -C-CCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GC-CG 1021 --GG-GUAA- GA-ACAA-GU --GCC-GNU( C----GAACA -----G---) GGCG-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-G-GC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-AU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CUU 1981 -CCU-G--(- GAGA-)-CAG -G-GCCU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-NCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UU-G |-AC--CUU- 2281 AG--GUG--C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAG-AAAA -CC-A-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CAGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.3 B.PANTHOTHENTICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.3 B.PANTHOTHENTICUS_SUBGROUP. ORGANISM 2.16.8.8.3 B.PANTHOTHENTICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.spWN13 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp. str. WN13 DSM 5271. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. str. WN13 DSM 5271. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Wallbanks,S. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 5271 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72876|g452364 isolate_name= WN13 BASE COUNT 376 a 349 c 470 g 296 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ......GAGC 121 N--CG----- -----GGAAG CAGACUGAA- ---------- ---------- ---------- 181 ---------- ---------- ------U-CC (--UU----- ---------- ---------- 241 --------NG -)GG-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --GGAUGUCU GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-C AA-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GG----U GU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -GCUAU--U- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGAA------ -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGC-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCAU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGU|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAC-GU --GCU-GUU( C----GAAUA -----G---) GGCA-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GG-C CA-UAG-C(- UC-A)A-CUA -UG-G-AGG- 1321 -GCCA-UUGG A-AAC-UGGG G-AACUU-GA GUA-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-GA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(-UC-CA)- ---------- ---------- ---------- -------ACC -CUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCGG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GUCU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGA-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCCAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CG A-AG-U-GGG GCC-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp14 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Lawson,P.A. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X82436|g607046 (bases 34 to 1425) BASE COUNT 348 a 329 c 441 g 271 t 2987 others ORIGIN 1 .......... .......... .......... ..GCGGGAAG CUGACU(G-A A)U-CCU|-U 61 CGGGAG-GAC -GUGA-G--- UGGA-ACG.. .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------A-C UU-U--G-G- ---UUC-(-- --------AU 541 AG-------- -)-GAA---- CC-GA----A GU-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-UC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U UG-CGG-C(- UC-A)A-CCG -CA-A-GCG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUA-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UC- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GNC-C---(G CAG)---C-G GC-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCCA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCGG--- -AU----GUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CCG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- AA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUN- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pantothe 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pantothenticus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pantothenticus. ORGANISM Bacillus pantothenticus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60627 NCDO 1765 = NCTC 8162 = NCIMB 8775 = DSM 26 = ATCC 14576 (T) BASE COUNT 318 a 337 c 439 g 277 t 3005 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CUU|-G 61 GCUCNG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--CG----G G----AAGCA AGCAGAU--- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGACG---- -CU|-UG--- UCCA-ACGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GAU---- ---------- -------A-C AU-A--U-C- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- GA-GA----U GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---AUAU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUN-G---UU 721 GG-UG-AG-( AU-NAA-AG) -C-UCACC-A A|-GGC-GN- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UN(--UU-CG --)GA-UCGU NAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACNA-GU --GCC-AUU( C----GAAUN -----G---) GUUG-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-NG--AAAG ---------C 1141 -CCCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GCCN-UUGG A-AAC-UGGG G-GACUU-GA GUN-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACN-CCNG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUN AG-G------ -------UG- C-GAAA-GC- GU-GGG-NA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAN -GG-GGU--- ---------- 1681 -(-UU-CN)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UN--AA---- --GU-(NAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -NAA-AGAAU UG-ACGGG-G -G-A-CC--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-GGU -UUNAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---UCUG--- -AC----GCC 1981 -CCU-A--(- GAGA-)-UAG -G-GNGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|N--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CN--NGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-U-GG -AA--CNAAG GGC-N-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCNAA-U CCCAU-NAAA -CC-N-UUC- UCNGUUCGGA 2941 U-UGCAGGC- (UGCNAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pantoth2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pantothenticus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pantothenticus. ORGANISM Bacillus pantothenticus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16275|g457637 BASE COUNT 380 a 351 c 466 g 293 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----G G----AACNA AGCAGAU--- ---------- ---------- ---------- 181 ---------- ---------- -----CU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -UGACG---- -CU|-UG--- UCCA-ACGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GAU---- ---------- -------A-C AU-A--U-C- ---GUC-(-- --------CA 541 UA-C------ -)-GA----- GA-UG----U UG--AAAA-- ---GGCGGC- ---------- 601 --(------- ---AUAU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-AUU( C----GAAUA -----G---) GUUG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-AGG- 1321 -GCCA-UUGG A-AAC-UGGG G-GACUU-GA GUA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----GCC 1981 -CCU-A--(- GAGA-)-UAG -G-GAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACU-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbl.litora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halobacillus litoralis str. SL-4 DSM 10405 (T). ACCESSION No information KEYWORDS No information. SOURCE Halobacillus litoralis str. SL-4 DSM 10405 (T). ORGANISM Halobacillus litoralis. REFERENCE 1 AUTHORS Spring,S., Ludwig,W., Marquez,M.C., Ventosa,A. and Schleifer ,K.H. TITLE Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 492-496 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10405 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94558|g1181223 isolate_name= SL-4 BASE COUNT 382 a 373 c 497 g 307 t 2817 others ORIGIN 1 .......... .......... .......... .........C AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAAG CGAGUGGCU- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --UGAAGCUC GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -AAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 GU-AAU---- ---------- -------A-C UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AA----A GU-UGAAA-- ---GAUGGC- ---------- 601 --(------- --UUCUU--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GU-( ---GCGAAUA GA-------) -GCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UU CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUGG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- UA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCC-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mrc.albus1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Marinococcus albus. ACCESSION No information KEYWORDS No information. SOURCE Marinococcus albus. ORGANISM Marinococcus albus. REFERENCE 1 AUTHORS Lawson,P.A., Deutch,C.E. and Collins,M.D. TITLE Phylogenetic characterization of a novel salt-tolerant species: description of Bacillus dipsosauri sp. nov. JOURNAL J. Appl. Bacteriol. 81 (1), 109-112 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X90834|g1483521 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 368 a 360 c 481 g 279 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAAG CGAGCAGAAG ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -UGGACGCUC GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -AAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------C-C AA-C--G-G- ---UUC-(-- --------UC 541 CU-------- -)-GAA---- CC-GA----U GG-UAAAAG- ---GAUGGC- ---------- 601 --(------- --UUCUU--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GGAA CGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--AUUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GG --ACG-GU-( ---ACGAACA CA-------) -GCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG GAAAC-UGGG G-AACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCG--GU-UU CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUGG--- -CU----ACU 1981 -UCC-A--(- GAGA-)-UGG -A-AGGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| CAA-G--UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -GA--CAAAC GGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- UA-GCCAA-U CCGAG--AAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GCGAGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUACN--- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG GCC-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spo.ureae3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporosarcina ureae.. ACCESSION No information KEYWORDS No information. SOURCE Sporosarcina ureae. ORGANISM Sporosarcina ureae. REFERENCE 1 AUTHORS Farrow,J.A., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic analysis of the genera Planococcus, Planococcus and Sporosarcina and their Relationships to members of the Genus Bacillus JOURNAL FEMS Microbiol. Lett. 72, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62174|g452433 (bases 6 to 1496) NB: X62175 replaces X62174. seq is most likely to be for Sporosarcina halophila not Spo .ureae BASE COUNT 373 a 358 c 473 g 285 t 2887 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAAG CAAGCGG--- ---------- ---------- ---------- 181 ---------- ---------- ----AU--CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---GAAGCUU GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -AAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GN 481 GU-AAC---- ---------- -------A-C CU-A--C-C- ---UUC-(-- --------AC 541 CU-------- -)-GAA---- GG-AA----G GU-UAAAA-- ---GAUGGC- ---------- 601 --(------- --UUCUC--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG ---AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GGAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GU-( ---ACGAACA CA-------) -GCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG GAAAC-UGGG G-AACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A CG-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UU CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUGG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-UGCU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- UA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CG A-AGGU-GG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Hbl.haloph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Halobacillus halophilus. ACCESSION No information KEYWORDS No information. SOURCE Halobacillus halophilus. ORGANISM Halobacillus halophilus. REFERENCE 1 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their Relationships to members of the Genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62174|g452433 Former RDP Sids: Spo.haloph NCIMB 2269 (T) = DSM 2266 = ATCC 35676 NB: GB entry dated 15-FEB-1993 has this listed as Sporosarcina ureae GB entry updated 31-JAN-1994; S49902 secondary acc; NCBI gi: 452433 GB entry updated 31-JAN-1994 gives 16S as X62174 (6..1496) former name Sporosarcina halophila BASE COUNT 364 a 349 c 454 g 278 t 2931 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAAG CAAGCGG--- ---------- ---------- ---------- 181 ---------- ---------- ----AU--CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---GAAGCUU GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-C-GG 421 -AAU-AA-CC C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-C CU-A--C-C- ---UUC-(-- --------AC 541 CU-------- -)-GAA---- GG-AA----G GU-UAAAA-- ---GAUGGC- ---------- 601 --(------- --UUCUC--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GGAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GU-( ---ACGAACA CA-------) -GCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--GAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UU CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-GG---- ---------- 1681 -(CUU-CC)A ---------- ---------- ---------- -------CCC -CUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUGG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-UGUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- UA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.4 B.LENTUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.4 B.LENTUS_ASSEMBLAGE. ORGANISM 2.16.8.8.4 B.LENTUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.amvorans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus aminovorans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus aminovorans. ORGANISM Bacillus aminovorans. REFERENCE 1 AUTHORS Ash,C.A., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic relationships of thermoactinomyces and thermophilic spore-forming bacilli as revealed by comparative analysis of small sub-unit ribosomal RNA sequences JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62178 BASE COUNT 377 a 360 c 478 g 310 t 2851 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------U CUAAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU AGA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-U CG-A--A-G- ---AUU-(-- --------UC 541 AU-------- -)-GAU---- CU-UC----U UU-UGAAA-- ---GAUGGC- ---------- 601 --(------- --UUCUG--- ---)------ ---------| -GCUNU--C- A--CUG---- 661 ----CAGG-- AUN---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GUCC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUA---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUNUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGG 1981 -UAU-A--(- GAGA-)-UAU -A-CUUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUACG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.badius2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus badius. ACCESSION No information KEYWORDS No information. SOURCE Bacillus badius. ORGANISM Bacillus badius. REFERENCE 1 AUTHORS Lafay,B., Pichinoty,F. and Christen,R. TITLE Phylogenetic analysis of some Bacillus specific based on comparison of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77790|g456616 ATCC 14574 = NCDO 1760 BASE COUNT 356 a 347 c 452 g 287 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU GA-CGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGU UCAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----A AU-GGAAA-- ---GGCGG-- ---------- 601 --(------- -CUUUUAA-- ---)------ ---------| --CUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACG-GAA( G----UAAC- -----U---) GUCC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGG 1981 -UCU-G--(- GAGA-)-CAG -G-CCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --ACA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUACG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.badius 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus badius. ACCESSION No information KEYWORDS No information. SOURCE Bacillus badius. ORGANISM Bacillus badius. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60610 NCDO 1760 = ATCC 14574 BASE COUNT 350 a 340 c 427 g 277 t 2982 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CUU GA-CGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCGU UCAAG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AUU---- ---------- -------C-U UU-U--U-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AG----A AU-GGAAA-- ---GGCGG-- ---------- 601 --(------- -CUUUUAA-- ---)------ ---------| --CUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACG-GAA( G----UAAC- -----U---) NUCN-GU-NC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUNU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GC-UN- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UNGG A-AAC-UGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UNG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -NAA-GGAAU UN-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUN-- -AC----CNG 1981 -UCU-G--(- GAGA-)-CAG -G-CCNU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-NGA |---C|A--G 2161 GU-GG-AGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lentus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus lentus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus lentus. ORGANISM Bacillus lentus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60601 NCDO 1127 = ATCC 10840 (T) BASE COUNT 303 a 337 c 427 g 279 t 3030 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N ANNC-NUGCN A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---NAC -AC-GUGGG- CAA--CCU-A C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U CU-N--U-C- ---UUC-(-- --------UC 541 CU-------- -)-GGA---- GA-AA----G GU-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUU---- 661 ----ACNG-- AUG---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUNA-GA-C NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CGCNAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UN(--NU-CG --)GA-UCGU NAA--ACUN| UGUU-AU-CA 1021 --GG-GAA-- GA-ACNA-GU --NUC-GGA( G----UNAC- -----U---) GCCG-GU-GC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-UU- 1261 C-UN-NAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -NAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-GGU -UUNAUU-CG -(AAGCNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---UCUG--- -AC----CNC 1981 -CCU-A--(- GAGA-)-UAG -G-GNCU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CNG-AG-UGA |---C|N--G 2161 GU-GG-UGCN UN|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NAG-GU-N A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-U-GG -UA--CNAAG GGU-U-G-C- AA-GAC-C(G 2881 -CGA)GGUN- ---------- NA-GCUNA-U CCCAU-NAAA -CC-N-UUC- UCNGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UNGUN-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lentus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus lentus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus lentus. ORGANISM Bacillus lentus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16272|g457649 BASE COUNT 375 a 352 c 461 g 297 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---NAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U CC-UU-U-C- ---UUC-(-- --------UC 541 CU-------- -)-GGA---- GA-AA----G GU-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-CA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GACU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AC-AUC--- ---------- ---------- -----(---- -UAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lentus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus lentus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus lentus. ORGANISM Bacillus lentus. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78315|g1088408 BASE COUNT 356 a 331 c 439 g 286 t 2964 others ORIGIN 1 .......... .......... .......... .........G AGAGUN(N-G A)N-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGG-GGG-G -UNC-CU--A AUAN-AUNNA N-GUC-GAGC 121 G--AN----U -----GGU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--NU----- ---------- ---------- 241 --------UG -)NU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UN--- AGCG-GGGG- 361 -A-CG-GN-U GANU---AAN -AC-GUGGG- AAA--CCU-A C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU N--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-U CU-U--U-C- ---UUC-(-- --------UC 541 CU-------- -)-GGA---- GA-AA----G GU-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UN-CG --)GA-UCGU AAA--ACUC| UGUU-AU-CA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|N -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GACU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AC--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGNAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pmegatrm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pseudomegaterium. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pseudomegaterium. ORGANISM Bacillus pseudomegaterium. REFERENCE 1 AUTHORS Lafay,B., Pichinoty,F. and Christen,R. TITLE Phylogenetic analysis of some Bacillus specific based on comparison of small sub-unit ribosomal RNA sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77791|g456617 BASE COUNT 360 a 347 c 456 g 288 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUGU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----U---- -GG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-U--U-C- ---CAC-(-- --------AC 541 AU-------- -)-GUG---- GG-AA----A GC-UGAAA-- ---GUCGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGA--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G -C(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --AUC-GGA( G----UAAC- -----U---) GGGC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CC---- --AU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCCAA-U CCCAC-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.firmus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus firmus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus firmus. ORGANISM Bacillus firmus. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78314|g1088407 JCM 2512 = NCTC 10335 = NCIMB 9366 (T) = IAM 12464 = DSM 12 = CECT 14 = CCM 2213 = ATCC 14575 BASE COUNT 355 a 346 c 440 g 272 t 2963 others ORIGIN 1 .......... .......... .......... .........G AGAGUG(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUNCA A-GUC-GAGC 121 G--GA----C G----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- -CG|-NC--- AGCG-GNGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGN- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAN---- ---------- -------U-C UU-U--U-C- ---CUC-(-- --------AC 541 AU-------- -)-GAG---- GA-AA----A GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- --AUCU---- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GNCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GU-A 901 GGG-AAUCUU C-CCCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGN AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGN- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GN-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGGA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GN(-G AU-G)GCGA- -CUCUUCG-- ---------- ---------- ---------G 1501 UCU--NU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUNC)-CCN- ----GGUA-G NC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCAU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGN-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UU-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.firmus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus firmus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus firmus. ORGANISM Bacillus firmus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16268|g457645 IAM 12464 = NCTC 10335 = NCIMB 9366 (T) = JCM 2512 = DSM 12 = CECT 14 = CCM 2213 = ATCC 14575 BASE COUNT 372 a 356 c 467 g 288 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C G----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CACA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -CG|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------G-C UU-U--U-C- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GA-AA----A GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- --AUCUC--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---CCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.firmus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus firmus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus firmus. ORGANISM Bacillus firmus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60616 NCIMB 9366 (T) = NCTC 10335 = IAM 12464 = JCM 2512 = DSM 12 = CECT 14 = CCM 2213 = ATCC 14575 BASE COUNT 358 a 345 c 445 g 279 t 2949 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C G----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- -CG|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-C UU-U--U-C- ---CUC-(-- --------AC 541 AU-------- -)-GAG---- GN-AA----A GN-UGAAA-- ---GAUGGC- ---------- 601 --(------- --AUCUC--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCNU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCGAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.benzoevo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus benzoevorans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus benzoevorans. ORGANISM Bacillus benzoevorans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60611 Former RDP Sids: B.benzeovo NCIMB 12555 = LMD 79.7 = DSM 5391 = CCM 3364 = ATCC 49005 (T ) BASE COUNT 361 a 341 c 439 g 285 t 2950 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----G---- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUGGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCCAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----A---- -AG|-UA--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-C CU-U--U-C- ---CUC-(-- --------UC 541 AU-------- -)-GAG---- GA-AA----G GC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUN---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACG-AGA( G----UAAC- -----U---) GCUC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACCU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUA- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.circula3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus circulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus circulans. ORGANISM Bacillus circulans. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78312|g1088405 BASE COUNT 361 a 337 c 436 g 283 t 2959 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--GA----C U----U---- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUN- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----A---- -AG|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------C-C UU-U--U-C- ---CUC-(-- --------UC 541 AU-------- -)-GAG---- GA-AA----A GC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACAGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- N-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UN-CG --)GA-UCGC AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACA-AGA( G----UAAC- -----U---) GCUU-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGACU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGANU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-NGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- -C-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-NG-G |-AU--CUU- 2281 AG--UUGG-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GG -UA--CAAAG GGN-A-G-N- AA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUNC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.circulan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus circulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus circulans. ORGANISM Bacillus circulans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60613 NCDO 1775 = ATCC 4513 (T) BASE COUNT 351 a 327 c 428 g 274 t 2996 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- CUUUAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUNA AG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UNAUACC-GG 481 AU-NAU---- ---------- -------C-C UN-U--U-C- ---CUC-(-- --------UC 541 AU-------- -)-GAG---- GA-AA----A GC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|N-AC -NCUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UN(--NU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACN-AGA( G----UNAC- -----U---) NCUG-GU-GC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUNU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-NN-NAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-NACUN-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUNUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -NNUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- N--------- ---------- --(NU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-A-G-C- AA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCAAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.circula2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus circulans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus circulans. ORGANISM Bacillus circulans. REFERENCE 1 AUTHORS Cano,R.J., Borucki,M.K., Higby-Schweitzer,M., Poinar,H.N., Poinar,G.O. and Pollard,K.J. TITLE Bacillus DNA in fossil bees: an ancient symbiosis? JOURNAL Appl. Environ. Microbiol. 60, 2164-2167 (1994) STANDARD No information COMMENTS ATCC 4513 (T) = NCDO 1775 NB: data hand entered from paper BASE COUNT 135 a 105 c 167 g 102 t 3867 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACG-AGA( G----UAAC- -----U---) ACUG-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UU....... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.5 B.SIMPLEX_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.5 B.SIMPLEX_SUBGROUP. ORGANISM 2.16.8.8.5 B.SIMPLEX_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.psycsacc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus psychrosaccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus psychrosaccharolyticus. ORGANISM Bacillus psychrosaccharolyticus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60635 BASE COUNT 354 a 330 c 424 g 286 t 2982 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUGUUG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-CAACA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------U-U CU-U--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----G AU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---CUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CU(--NU-CG --)GG-UCGU AAA--GUUC| UNUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGA( G----UAAC- -----U---) NCUN-GU-NC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUNC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----UA G-AA-GAGGA AAG-U|GGAA 1381 UN-CCNCGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--NU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG AGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CUCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 NCACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.maroccan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus maroccanus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus maroccanus. ORGANISM Bacillus maroccanus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60626 BASE COUNT 356 a 333 c 430 g 284 t 2973 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGA----- -GA|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U CU-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----G AU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCNN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G C-(--UU-CG --)GG-UCGU NAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGA( G----UNAC- -----U---) -NCU-NU-NC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUNC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-NNG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.macroide 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus macroides. ACCESSION No information KEYWORDS No information. SOURCE Bacillus macroides. ORGANISM Bacillus macroides. REFERENCE 1 AUTHORS Farrow,J.A.E. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70312|g506596 BASE COUNT 371 a 347 c 456 g 296 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGA----- -GA|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U CU-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----G AU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGA( G----UAAC- -----U---) GCUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A NCUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CNC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGG..... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.simplex 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus simplex. ACCESSION No information KEYWORDS No information. SOURCE Bacillus simplex. ORGANISM Bacillus simplex. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60638 BASE COUNT 354 a 325 c 417 g 272 t 3008 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- -GA|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U CU-N--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----G AU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GCUGU--C- A--CUA---- 661 ----AUAG-- AUN---G-|G CCNNN----- -GG|----CG C--AUUA-G- CUA-G---UU 721 NG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GNA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUN-GN-NA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGA( G----UAACU -----G---) CNNN-GU-NC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 C-UN-NAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UN-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-NACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-NU-CN)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UN--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-NNUN--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-ACC-U(G 2881 -CGA)AGGU- ---------- NA-GCGAA-U CCCAU-AAAG -CC-A-UNC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUN-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.simplex2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus simplex str. ZAN-044. ACCESSION No information KEYWORDS No information. SOURCE Bacillus simplex str. ZAN-044. ORGANISM Bacillus simplex. REFERENCE 1 AUTHORS Valentine,N.B., Bolton,H.,Jr., Kingsley,M.T., Drake,G.R., Balkwill,D.L. and Plymale,A.E. TITLE Biosorption of cadmium, cobalt, nickel, and strontium by a Bacillus simplex strain isolated from the vadose zone JOURNAL J. Ind. Microbiol. 16, 189-196 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U39933|g1079751 geog_source= Hanford Site, Washington biol_source= vadose zone isolate_name= ZAN-044 BASE COUNT 282 a 250 c 338 g 220 t 3286 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .GA------- -----UG-CG 781 U-AN-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGA( G----UAAC- -----U---) GCUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUN-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-NU-U--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-NCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-ANUC-AU CAU-G-CC-C CUUAU-G-AU -CN--GGUG- 2821 G-ACA-AA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-ACC-U(G 2881 -CGA)AGGU- ---------- AA-GCGAA-U CCCAU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AA........ .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.8.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.8.6 B.MEGATERIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.8.6 B.MEGATERIUM_SUBGROUP. ORGANISM 2.16.8.8.6 B.MEGATERIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.megateri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus megaterium. ACCESSION No information KEYWORDS No information. SOURCE Bacillus megaterium. ORGANISM Bacillus megaterium. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60629 DSM 32 = NCTC 10342 = NCIMB 9376 = NCDO 1773 (T) = ATCC 14581 BASE COUNT 358 a 322 c 413 g 282 t 3001 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUN-GAGC 121 G--AA----C -----UNAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---NAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-U CU-U--C-U- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- AG-AU----G AU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- NGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--NU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACN-AGA( G----UAAC- -----U---) NCUN-GU-NC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUNAU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UN-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUN-GA GUG-----CA G-AA-GAGAA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGN- -CUNUNUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUN AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UN--CA---- --NC-(UAA- ---C)G-CA- UNAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UNG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GNGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUN- ---------- AA-GCCAA-U CCCAU-NAAA -CC-A-UNC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.megater2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus megaterium. ACCESSION No information KEYWORDS No information. SOURCE Bacillus megaterium. ORGANISM Bacillus megaterium. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16273|g457650 BASE COUNT 383 a 340 c 456 g 307 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAG-G--C UAAUACC-GG 481 AU-AGG---- ---------- -------A-U CU-U--C-U- ---CCU-(-- --------UC 541 AU-------- -)-GGG---- AG-AU----G AU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACA-AGA( G----UAAC- -----U---) GCUU-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACG-U-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A5g 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A5g.. ACCESSION No information KEYWORDS No information. SOURCE clone A5g. ORGANISM clone A5g. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91428|g987733 BASE COUNT 90 a 69 c 119 g 76 t 4022 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C GA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGASG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GN(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- ---S-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.9 B.SUBTILIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.9 B.SUBTILIS_GROUP. ORGANISM 2.16.8.9 B.SUBTILIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.9.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.9.1 B.COHNII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.9.1 B.COHNII_SUBGROUP. ORGANISM 2.16.8.9.1 B.COHNII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D. TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76447|g498807 BASE COUNT 379 a 353 c 465 g 305 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C UN---ACAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-AG (--CU----- ---------- ---------- 241 --------UG -)CU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UUGU---- AAG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AA-A--G-A- ---ACC-(-- --------UC 541 CU-------- -)-GGU---- UC-UU----U AU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-AGA( G----UAAC- -----U---) GCUC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCANGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -CC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- AA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cohnii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus cohnii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cohnii. ORGANISM Bacillus cohnii. REFERENCE 1 AUTHORS Nielsen,P., Rainey,F.A., Outtrup,H., Priest,F.G. and Fritze,D . TITLE Comparative 16S rDNA sequence analysis of some alkaliphilic bacilli and the establishment of a sixth rRNA group within the genus Bacillus JOURNAL FEMS Microbiol. Lett. 117, 61-65 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76437|g498797 BASE COUNT 381 a 356 c 464 g 303 t 2872 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GNC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------CU UCUUUAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAAA GAAG------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-A--G-U- ---ACC-(-- --------UC 541 CU-------- -)-GGU---- AC-UA----U AU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAN--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GCC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-AGA( G----UAAC- -----U---) GCUC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -CC----ACC 1981 -UCU-A--(- GAGA-)-UAG -A-GCGU--- UC-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- AA-AAC-C(G 2881 -CGA)GGUC- ---------- GA-GCCAA-U CCCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.fastidio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus fastidiosus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus fastidiosus. ORGANISM Bacillus fastidiosus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60615 BASE COUNT 363 a 333 c 432 g 293 t 2955 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--C AUAC-AUGCA A-GUC-GAAC 121 G--AA----C A----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------GG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- -UG|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAU-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U GA-G--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-CU----U AU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G C-(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAACU -----G---) GCCG-GN-UC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UN-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-NA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- NU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -CC----ACU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- UU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| ACA-GA-GUG |---A|C--A 2161 GG-UG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-GAC-U(G 2881 -CGA)AGUC- ---------- AA-GCGAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.9.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.9.2 B.AZOTOFORMANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.9.2 B.AZOTOFORMANS_SUBGROUP. ORGANISM 2.16.8.9.2 B.AZOTOFORMANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Exg.acetyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Exiguobacterium acetylicum.. ACCESSION No information KEYWORDS No information. SOURCE Exiguobacterium acetylicum. ORGANISM Exiguobacterium acetylicum. REFERENCE 1 AUTHORS Nakagawa,Y. TITLE Phylogenetic study of Exiguobacterium acetylicum JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D55730|g893364 BASE COUNT 374 a 345 c 472 g 286 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----- -----GG-AA ACUGACGGAA ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (--UC----- ---------- ---------- 241 --------GG -)AG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----AAGGCA GUGGAA---- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- GAA--CCU-G C-CUCA---A -GGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------U-C AA-C--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGN---- CC-NU----G AA-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- A--CCU---- 661 ----UGAG-- AUG---G-|C CUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-AGA( G----GUAA- -----U---) GCUC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-NGG- 1321 -GCCA-UUGG A-AAC-UGGA A-GGCUU-GA GUA-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--AA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UC|--- ---------C ---CAUUG-- -AC----CGC 1981 -UUG-A--(- GAGA-)-UCA -A-GUUU--- UU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GA--C| AAU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGGAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG GUA-GA-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Brb.acetyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brevibacterium acetylicum. ACCESSION No information KEYWORDS No information. SOURCE Brevibacterium acetylicum. ORGANISM Brevibacterium acetylicum. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70313|g506901 BASE COUNT 371 a 346 c 463 g 287 t 2909 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----- -----GGCAA ACUGACGGAA ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (--UC----- ---------- ---------- 241 --------GG -)AG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----AAGGCA GUGGAA---- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- GAA--CCU-G C-CUCA---A -GGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------U-C AA-C--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GC----U GA-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- A--CCU---- 661 ----UGAG-- AUG---G-|C CUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-AGA( G----GUAA- -----U---) GCUC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GCCA-UUGG A-AAC-UGGA A-GGCUU-GA GUA-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UC|--- ---------C ---CAUUG-- -AC----CGC 1981 -UUG-A--(- GAGA-)-UCA -A-GUUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Exg.sp7_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Exiguobacterium sp.. ACCESSION No information KEYWORDS No information. SOURCE Exiguobacterium sp. ORGANISM Exiguobacterium sp. REFERENCE 1 AUTHORS Lawson,P.A. and Holt and Collins,M.D. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X86064|g1143446 BASE COUNT 369 a 344 c 465 g 287 t 2911 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----- -----GG-AA GCUCACGGAA ---------- ---------- ---------- 181 ---------- ---------- -----CU-CU (--UC----- ---------- ---------- 241 --------GG -)AG-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----AAGNGA AGGGAA---- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- GAA--CCU-G C-CCCA---A -GGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- A(-GAAA-)U -CGGA-G--C UAAUACC-GA 481 AU-AGU---- ---------- -------U-C UU-C--A-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CU-GA----U GA-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UCCG--- ---)------ ---------| --GCGU--C- A--CCU---- 661 ----UGGG-- AUG---G-|C CUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACG-AGA( G----GUAA- -----U---) GCUC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GGCUU-GA GUA-----CA G-AA-GAGAA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GC-CU C|C|G-CCU- G-GGGAGUAC 1801 GGU-CC--(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UC|--- ---------C ---CCUUG-- -AC----CGU 1981 -UUG-A--(- GAGA-)-UCA -A-GUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAN-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G........ .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Exg.aurant 4376 bp RNA RNA 02-JUL-1998 DEFINITION Exiguobacterium aurantiacum. ACCESSION No information KEYWORDS No information. SOURCE Exiguobacterium aurantiacum. ORGANISM Exiguobacterium aurantiacum. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70316|g506532 BASE COUNT 374 a 354 c 496 g 292 t 2860 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----- -----GGAAG UCAUCUGAA- ---------- ---------- ---------- 181 ---------- ---------- --------CU (--UC----- ---------- ---------- 241 --------GG -)GG------ ---------- ---------- ---------- ---------- 301 ---------- ---------- --GGACGUUG ACGGAA---- ---|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- GAA--CCU-G C-CCUC---A -GGUC-U-GG 421 -GAU-AA-CC A--------- ------CG-- A(-GAAA-)U -CGGG-G--C UAAUACC-GG 481 AU-GGG---- ---------- -------U-C AU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----G GA-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- G--CCU---- 661 ----GGGG-- AUG---G-|C UUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --N-C-GCA( G----GCAA- -----U---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GC G-AG--AAAG ---------C 1141 -CANGGNU-A ACUAN-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GC-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GCCA-UUGG A-AAC-UGGG A-GGCUU-GA GUA-----UA G-GA-GAGAA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUUUG-- ---------- ---------- ---------G 1501 CCU--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAC-UC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----CGG 1981 -UAC-A--(- GAGA-)-UGU -A-CCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--C| AGG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AN-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAG-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGC-AU)-A CUG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U-GCC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.azotofor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus azotoformans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus azotoformans. ORGANISM Bacillus azotoformans. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60609 BASE COUNT 322 a 328 c 423 g 276 t 3027 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-N A)N-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N ANAC-NUNCN A-GUC-GAGC 121 G--GA----- -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---NAN -NC-GUGGG- CAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UNAUACC-GG 481 AU-AAC---- ---------- -------U-C UU-C--G-A- ---ACC-(-- --------UC 541 AU-------- -)-GGU---- UN-GA----A GA-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACNG-- ANG---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UN-CG --)GG-UCGU NAA--GCUN| UGUU-GU-UN 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGU( -----UNACU ---------) GCUN-GU-NC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CN-CNG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCN-UUGG A-AAC-UGGG G-NACUU-GA GUG-----CN G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUNUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AAGCAA-C G)--CNAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------N ---UCUG--- -AC----NAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- C--------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CAG-AA-UGA |---C|N--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-CN-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUNNU-G-AC -CU--NGGC- 2821 U-ACN-CN-C GUG--CNNCN AUGGA-N-GN -UA--CNNAG GGN-N-G-C- NA-ANN-N(N 2881 -NGA)GGNU- ---------- GA-GCCAA-U CC-AU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-NCA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.azotofo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus azotoformans. ACCESSION No information KEYWORDS No information. SOURCE Bacillus azotoformans. ORGANISM Bacillus azotoformans. REFERENCE 1 AUTHORS Shida,O. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78309|g1088402 BASE COUNT 342 a 332 c 443 g 279 t 2980 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- -----UNAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- --ANAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUN ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAU---- ---|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---NAC -AC-GUGGN- CAN--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------U-C UU-C--G-A- ---ACC-(-- --------UC 541 AU-------- -)-GGU---- UC-GA----A GA-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GN-AG- N-A---GU-A 901 GGG-AAUCUN C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGN AAA--GCUC| UGUU-GU-UA 1021 --GG-GAG-- GA-ACAA-GU --ACC-AGU( -----UAACU ---------) GCUG-GU-AC 1081 ---------- -------C-U U-GA-CGGN- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A NCUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUNG |-GUGG-C-- 1201 AAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAC- G-CC-GC--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-N |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AN 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- UA-NGC-C(G 2881 -CGA)GGUU- ---------- GA-GCCAU-N CCCAU-AAGG -CC-A-UCC- UNAGUCCGGU 2941 U-NGUGGGU- (UGAANN-U- C)-GCCUANA -UNAGGC-CG -GAUU-CGU- -UAGUN-NNC 3001 GN-GGU-(NC -AGA-NU)-G CCG-NGGGG- AUUAC-GUC- CCC-GGG-CC UGGUC----A 3061 AAACCGCCC- GNN-AAA--- --CCA-CGAN A--GU-UGG- UA-NA-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.9.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.9.3 B.PUMILUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.9.3 B.PUMILUS_ASSEMBLAGE. ORGANISM 2.16.8.9.3 B.PUMILUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.PD011691 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Cano,R.J., Borucki,M.K., Higby-Schweitzer,M., Poinar,H.N., Poinar,G.O. and Pollard,K.J. TITLE Bacillus DNA in fossil bees: an ancient symbiosis? JOURNAL Appl. Environ. Microbiol. 60, 2164-2167 (1994) STANDARD No information COMMENTS legacy_attribute= date_source=011691 biol_source= Proplebeia dominicana (abdomen), 23- to 40-MYO NB: data hand entered from paper BASE COUNT 133 a 108 c 171 g 98 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACAA-GU --ACG-GGA( G----UAAC- ----AU---) GCCG-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA A-GA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -AU....... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.PD011891 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Cano,R.J., Borucki,M.K., Higby-Schweitzer,M., Poinar,H.N., Poinar,G.O. and Pollard,K.J. TITLE Bacillus DNA in fossil bees: an ancient symbiosis? JOURNAL Appl. Environ. Microbiol. 60, 2164-2167 (1994) STANDARD No information COMMENTS legacy_attribute= date_source=011891 biol_source= Proplebeia dominicana (abdomen), 23- to 40-MYO NB: data hand entered from paper BASE COUNT 133 a 103 c 175 g 99 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACG-GGA( G----UAAC- ----AU---) GCCG-GU-GC 1081 ---------- -------C-U U-GA-CGGU- G-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-CAG-GC -G|-GU-UA- 1261 A-UU-AAG|U CUG---AUGA U-AAA-GC-C CC-CCG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAA-GGGG G-AACUU-GA GUG-----GU G-GA-GGGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -AU....... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp12605 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Nakagawa,Y. TITLE Phylogenetic study of low G+C subdivision of gram-positive bacteria JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D55731|g893356 BASE COUNT 367 a 341 c 462 g 296 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------U-C CU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA---GA AU-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AN-C-NG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-AGA( G----UAAC- -----U---) GCUC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-U-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pumilus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pumilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pumilus. ORGANISM Bacillus pumilus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60637 NCDO 1766 = DSM 27 = NCTC 10337 = NRS 272 = NCIMB 9369 = ATCC 7061 (T) BASE COUNT 347 a 331 c 430 g 282 t 2986 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C A----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- -UG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-N C-CUGU---N -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AGU---- ---------- -------U-C CU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-NGU---- AC-AA----G GA-UGAAA-- ---GACGGU- ---------- 601 --(------- ---NUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----ACAG-- AUN---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-AGA( G----UAAC- -----U---) NCUC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CN-CNG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG N-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUNACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UN--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GNUN--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CNAAG GGC-U-G-C- GA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCNAC-U- N)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- NA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pumilus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pumilus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pumilus. ORGANISM Bacillus pumilus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02894|g455037 ATCC 72 = NRS 736 = AMHN 734 BASE COUNT 96 a 98 c 110 g 76 t 3996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .G--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CN-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-U-G-C- AA-GAC-C(G 2881 -CAA)GGUU- ---------- UA-GCCAA-U CCCAU-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- CA-AC-ACCC -GAA-G-UCN 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.PD031193 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Cano,R.J., Borucki,M.K., Higby-Schweitzer,M., Poinar,H.N., Poinar,G.O. and Pollard,K.J. TITLE Bacillus DNA in fossil bees: an ancient symbiosis? JOURNAL Appl. Environ. Microbiol. 60, 2164-2167 (1994) STANDARD No information COMMENTS legacy_attribute= date_source=031193 biol_source= Proplebeia dominicana (abdomen), 23- to 40-MYO NB: data hand entered from paper BASE COUNT 133 a 104 c 173 g 100 t 3866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUG( A----UCAG- ----AG---) GGAG-CC-AC 1081 ---------- -------G-U C-UA-AGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -AU....... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.9.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.9.4 B.SUBTILIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.9.4 B.SUBTILIS_SUBGROUP. ORGANISM 2.16.8.9.4 B.SUBTILIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.atrophus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus atrophaeus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus atrophaeus. ORGANISM Bacillus atrophaeus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60607 BASE COUNT 323 a 331 c 416 g 270 t 3036 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--GA----C A----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UNA---- -UG|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---NAC -AC-GUGGG- UAA--CCU-N C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UAAUACC-GG 481 AU-GCA---- ---------- -------N-N UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACNG-- AUN---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-NAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUN| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----AAAUA -----G---) GGCG-GN-AC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUNU CC-GGAAUNN -UU-NGGC|G UNAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UN-NAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-NGG- 1321 -GUCA-UNGG A-AAC-UGGG G-NACUN-NA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUNACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUNAG-UGC 1741 UN--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---UCUG--- -AC----NCC 1981 -CCU-A--(- GAGA-)-UAG -G-NCUU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-NCN-CA-C GUG--CUNCA AUGGA-C-NG -AA--CNAAG GGC-N-G-C- GA-GAC-C(G 2881 -CGA)GGUN- ---------- NA-GCCNA-U CCCNC-NAAU -CU-N-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCNAC-U- N)-GACUGCG -UGAAGC-UN -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUN-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.popillia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus popilliae. ACCESSION No information KEYWORDS No information. SOURCE Bacillus popilliae. ORGANISM Bacillus popilliae. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60633 BASE COUNT 351 a 341 c 442 g 283 t 2959 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AGAC-AUGCA A-GUC-GAGC 121 G--GA----C A----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- -UG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UGAAA-- ---GGUNGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACNG-- AUN---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----AAAUA -----G---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-U-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----ACC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-GAC-C(G 2881 -CGA)GGUN- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UAC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.licheni2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus licheniformis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus licheniformis. ORGANISM Bacillus licheniformis. REFERENCE 1 AUTHORS ., Ehrmann,M., Hertel,C., Jilg,S., Tatzel,R., Zitzelsberger ,H., Liebl,S., Hochberger,M., Shah,J., Lane,D. and Wallnoef ,P.R. Ludwig,W., Kirchof,G., Klugbauer,N., Weizenegger,M., Betzl,D TITLE Bacteria with a low DNA G+C content Complete 23S ribosomal RNA sequences of Gram-positive JOURNAL Syst. Appl. Microbiol. 15, 487-501 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68416 DSM 13 = NCTC 10341 = NCIMB 9375 = ATCC 14580 = NCDO 1772 = IFO 12200 = CCM 2145 BASE COUNT 380 a 370 c 486 g 309 t 2831 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UUA---- -GG|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U CA-UAAAA-- ---GGUGGCU ---------- 601 --(------- ---UUU---- ---)------ ---------| AGCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.licheni3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus licheniformis str. B-6-4J. ACCESSION No information KEYWORDS No information. SOURCE Bacillus licheniformis str. B-6-4J. ORGANISM Bacillus licheniformis. REFERENCE 1 AUTHORS Nagashima,K. TITLE Nucleotide sequence of 16S rRNA gene of Bacillus licheniformis JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31739|g497790 (bases 1 to 1424) biol_source= isolate 4J-26D7 isolate_name= B-6-4J BASE COUNT 354 a 345 c 446 g 279 t 2952 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UUA---- -GG|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U CA-UAAAA-- ---GGUGGCU ---------- 601 --(------- ---UUU---- ---)------ ---------| AGCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lichenif 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus licheniformis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus licheniformis. ORGANISM Bacillus licheniformis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60623 NCDO 1772 = DSM 13 = NCTC 10341 = NCIMB 9375 = ATCC 14580 = IFO 12200 = CCM 2145 BASE COUNT 346 a 342 c 430 g 275 t 2983 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C C----GAC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UUA---- -GG|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-N--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G AU-U--G-A- ---ACC-(-- --------NN 541 NN-------- -)-NGU---- CC-AA----U CA-UAAAA-- ---GGUGGCU ---------- 601 --(------- ---UUU---- ---)------ ---------| AGCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UN(--UN-CG --)GA-UCGU AAA--NCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -NNUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GNUU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCU- ---------- NA-GCCAA-U CCCAC-AAAU -CU-N-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUNCG -UGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pae.lautus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Paenibacillus lautus. ACCESSION No information KEYWORDS No information. SOURCE Paenibacillus lautus. ORGANISM Paenibacillus lautus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60621 Former RDP Sids: B.lautus NCIMB 12780 = DSM 3035 = ATCC 43898 NB: former name Bacillus lautus BASE COUNT 358 a 338 c 441 g 280 t 2959 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NN-AA----U UA-UAAAA-- ---GGUGNCU ---------- 601 --(------- ---NUU---- ---)------ ---------| AGCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG GGC-A-G-C- GA-AGC-C(G 2881 -CGA)GGCU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC NNGUA----C 3061 ACACCGCCC- GUN-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.lentimor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus lentimorbus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus lentimorbus. ORGANISM Bacillus lentimorbus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60622|g39570 NB: GB annotation incorrect; X60622 (1..>1429) not (7..>1429 ) BASE COUNT 342 a 336 c 439 g 272 t 2987 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-C UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-NAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-NAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUN| UNUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----AAAUA -----G---) GGCG-GN-AC 1081 ---------- -------C-U N-NA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUNGU CC-GGAAUNA -NU-GGGC|G UAAA-GNGC- GCG-CAG-GC -G|-GU-NU- 1261 C-UN-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUN- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGG-C-AG -AA--CNAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUN- ---------- NA-GCCAA-U CCCAC-NAAU -CU-N-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCNAC-U- N)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.amylique 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus amyloliquefaciens. ACCESSION No information KEYWORDS No information. SOURCE Bacillus amyloliquefaciens. ORGANISM Bacillus amyloliquefaciens. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60605 BASE COUNT 349 a 337 c 446 g 283 t 2961 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GCU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----AAAUA -----G---) GGCG-GN-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUN -UU-GGGC|G UNAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-NAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --G--(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGG-C-AG -AA--CNAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCCAA-U CCCAC-AAAU -CU-A-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis str. 168 [gene=rrnO gene]. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis str. 168 [gene=rrnO gene]. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1, 1-14 (1994) STANDARD No information REFERENCE 2 AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region JOURNAL Nucleic Acids Res. 13, 2251-2265 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26185|g467326 (bases 73411 to 74963) operon= rrnO gene isolate_name= 168 BASE COUNT 381 a 365 c 491 g 314 t 2825 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------N-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CN-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnO 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 9809 to 11361) operon= rrnO gene BASE COUNT 382 a 365 c 491 g 315 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnJ 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 90533 to 92085) operon= rrnJ gene BASE COUNT 382 a 364 c 491 g 316 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----GCAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis str. 168 [gene=rrnJ gene]. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis str. 168 [gene=rrnJ gene]. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1, 1-14 (1994) STANDARD No information REFERENCE 2 AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region JOURNAL Nucleic Acids Res. 13, 2251-2265 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26185|g467326 (bases 154135 to 155687) operon= rrnJ gene isolate_name= 168 BASE COUNT 382 a 364 c 491 g 315 t 2824 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-NAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----GCAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnE 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 635150 to 636702) operon= rrnE gene BASE COUNT 386 a 364 c 487 g 316 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnI 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert TITLE The complete genome sequence of the Gram-positive bacterium Bacillus subtilis JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 160892 to 162443) operon= rrnI gene BASE COUNT 385 a 363 c 487 g 317 t 2824 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CUUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-AC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 30277 to 31829) operon= rrnA gene BASE COUNT 383 a 365 c 490 g 315 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis str. 168 [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis str. 168 [gene=rrnA gene]. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1, 1-14 (1994) STANDARD No information REFERENCE 2 AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region JOURNAL Nucleic Acids Res. 13, 2251-2265 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26185|g467326 (bases 93879 to 95431) operon= rrnA gene isolate_name= 168 BASE COUNT 382 a 365 c 490 g 314 t 2825 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------N-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CN-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE sequences Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60646 Former RDP Sids: B.subtilu2 NCDO 1769 = ATCC 6051 BASE COUNT 355 a 336 c 448 g 285 t 2952 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUNU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --G--(UAA- ---C)G-CA- UUNA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UG-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis str. 168 [gene=rrnW gene]. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis str. 168 [gene=rrnW gene]. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Ogasawara,N., Nakai,S. and Yoshikawa,H. TITLE Systematic sequencing of the 180 kilobase region of the Bacillus subtilis chromosome containing the replication origin JOURNAL DNA Res. 1, 1-14 (1994) STANDARD No information REFERENCE 2 AUTHORS Moriya,S., Ogasawara,N. and Yoshikawa,H. TITLE Structure and function of the region of the replication origin of the Bacillus subtilis chromosome. III. Nucleotide sequence of some 10,000 base pairs in the origin region JOURNAL Nucleic Acids Res. 13, 2251-2265 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D26185|g467326 (bases 159991 to 161543) operon= rrnW gene isolate_name= 168 BASE COUNT 384 a 365 c 489 g 315 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtili9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Green,C.J., Stewart,G.C., Hollis,M.A., Vold,B.S. and Bott,K .F. TITLE Nucleotide sequence of the Bacillus subtilis ribosomal RNA operon, rrnB JOURNAL Gene 37, 261-266 (1985) STANDARD No information REFERENCE 2 AUTHORS Stewart,G.C. and Bott,K.F. TITLE DNA sequence of the tandem ribosomal RNA promoter for B.subtilis operon rrnB JOURNAL Nucleic Acids Res. 11, 6289-6300 (1983) STANDARD No information REFERENCE 3 AUTHORS Green,C.J. and Vold,B.S. TITLE Sequence analysis of a cluster of twenty-one tRNA genes in Bacillus subtilis JOURNAL Nucleic Acids Res. 11, 5763-5774 (1983) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: K00637 (bases 485 to 2034) NB: worse sequence than earlier version (B.subtilis) BASE COUNT 381 a 363 c 489 g 317 t 2826 others ORIGIN 1 .......... .......... .......... ..UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGGU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUUU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGUU GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUGA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CU AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-A-C-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 3176163 to 3177712) complement operon= rrnB gene BASE COUNT 381 a 363 c 489 g 317 t 2826 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGGU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAACA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUUU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGUU GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUGA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CU AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-A-C-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis str. 168. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis str. 168. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS .F. Green,C.J., Stewart,G.C., Hollis,M.A., Vold,B.S. and Bott,K TITLE operon, rrnB Nucleotide sequence of the Bacillus subtilis ribosomal RNA JOURNAL Gene 37, 261-266 (1985) STANDARD No information REFERENCE 2 AUTHORS Stewart,G.C. and Bott,K. TITLE DNA sequence of the tandem ribosomal RNA promoter for B.subtilis operon rrnB JOURNAL Nucleic Acids Res. 11, 6289-6300 (1983) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: K00637 isolate_name= 168 NB: better sequence than later version (B.subtili9) BASE COUNT 383 a 365 c 490 g 314 t 2824 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGGU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrH2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 166498 to 168051) operon= rrnH gene BASE COUNT 383 a 367 c 489 g 315 t 2822 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~CUUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CC-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-C CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrG2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 171497 to 173046) operon= rrnG gene BASE COUNT 385 a 362 c 488 g 315 t 2826 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------UAG UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUG--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AG-U-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnD 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 946202 to 947755) operon= rrnD gene BASE COUNT 385 a 364 c 489 g 316 t 2822 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~AUUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -CUUAC--C- A--AUU---- 661 ----ACAG-- AUG---G-|C CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-GCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-A-C-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.subtrrnW 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus subtilis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus subtilis. ORGANISM Bacillus subtilis. REFERENCE 1 AUTHORS Azevedo,V., Bertero,M.G., Bessieres,P., Bolotin,A., Borchert ,S., Borriss,R., Boursier,L., Brans,A., Braun,M., Brignell,S .C., Bron,S., Brouillet,S., Bruschi,C.V., Caldwell,B., Capuano,V., Carter,N.M., Choi,S.K., Codani,J.J., Connerton,I .F., Cummings,N.J., Daniel,R.A., Denizot,F., Devine,K.M., Dusterhoft,A., Ehrlich,S.D., Emmerson,P.T., Entian,K.D., Errington,J., Fabret,C., Ferrari,E., Foulger,D., Fritz,C., Fujita,M., Fujita,Y., Fuma,S., Galizzi,A., Galleron,N., Ghim ,S.Y., Glaser,P., Goffeau,A., Golightly,E.J., Grandi,G., Guiseppi,G., Guy,B.J., Haga,K., Haiech,J., Harwood,C.R., Henaut,A., Hilbert,H., Holsappel,S., Hosono,S., Hullo,M.F., Itaya,M., Jones,L., Joris,B., Karamata,D., Kasahara,Y., Klaerr-Blanchard,M., Klein,C., Kobayashi,Y., Koetter,P., Koningstein,G., Krogh,S., Kumano,M., Kurita,K., Lapidus,A., Lardinois,S., Lauber,J., Lazarevic,V., Lee,S.M., Levine,A., Liu,H., Masuda,S., Mauel,C., Medigue,C., Medina,N., Mellado ,R.P., Mizuno,M., Moestl,D., Nakai,S., Noback,M., Noone,D., O'Reilly,M., Ogawa,K., Ogiwara,A., Oudega,B., Park,S.H., Parro,V., Pohl,T.M., Portetelle,D., Porwollik,S., Prescott,A .M., Presecan,E., Pujic,P., Purnelle,B., Rapoport,G., Rey,M., Reynolds,S., Rieger,M., Rivolta,C., Rocha,E., Roche,B., Rose ,M., Sadaie,Y., Sato,T., Scanlan,E., Schleich,S., Schroeter ,R., Scoffone,F., Sekiguchi,J., Sekowska,A., Seror,S.J., Serror,P., Shin,B.S., Soldo,B., Sorokin,A., Tacconi,E., Takagi,T., Takahashi,H., Takemaru,K., Takeuchi,M., Tamakoshi ,A., Tanaka,T., Terpstra,P., Tognoni,A., Tosato,V., Uchiyama ,S., Vandenbol,M., Vannier,F., Vassarotti,A., Viari,A., Wambutt,R., Wedler,E., Wedler,H., Weitzenegger,T., Winters,P ., Wipat,A., Yamamoto,H., Yamane,K., Yasumoto,K., Yata,K., Yoshida,K., Yoshikawa,H.F., Zumstein,E., Yoshikawa,H. and Danchin,A. Kunst,F., Ogasawara,N., Moszer,I., Albertini,A.M., Alloni,G., TITLE Bacillus subtilis The complete genome sequence of the Gram-positive bacterium JOURNAL Nature 390, 249-256 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: AL009126 (bases 96389 to 97941) operon= rrnW gene BASE COUNT 384 a 365 c 489 g 315 t 2823 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAUCGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUGU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-GGU---- ---------- -------U-G UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A CA-UAAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUU---- 661 ----ACAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GUU( C----GAAUA -----G---) GGCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- UCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -AA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- AA-GCCAA-U CCCAC-AAAU -CU-G-UUC- UCAGUUCGGA 2941 U-CGCAGUC- (UGCAAC-U- C)-GACUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.10 STAPHYLOCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.10 STAPHYLOCOCCUS_GROUP. ORGANISM 2.16.8.10 STAPHYLOCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.A.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.10.1 STAPHYLOCOCCUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.10.1 STAPHYLOCOCCUS_SUBGROUP. ORGANISM 2.16.8.10.1 STAPHYLOCOCCUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37605|g576610 BASE COUNT 396 a 325 c 428 g 319 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGU-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26894 BASE COUNT 214 a 161 c 237 g 159 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epider 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS BASE COUNT 397 a 325 c 438 g 328 t 2888 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GN|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN-N-| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AN)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGY-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02913|g455056 BASE COUNT 109 a 89 c 107 g 89 t 3982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ....C-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CN-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGY-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Raadstroem,P., Backman,A., Qian,N., Kragsbjerg,P., Paahlson ,C. and Olcen,P. TITLE Detection of bacterial DNA in cerebrospinal fluid by an assay for simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy JOURNAL J. Clin. Microbiol. 32, 2738-2744 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22809 geog_source= Lund University Hospital biol_source= cerebrospinal fluid BASE COUNT 262 a 215 c 291 g 221 t 3387 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AU CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -AG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Podbielski,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75943|g840882 BASE COUNT 395 a 327 c 428 g 320 t 2906 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CCCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUU-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGU-G 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.epide7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus epidermidis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus epidermidis. ORGANISM Staphylococcus epidermidis. REFERENCE 1 AUTHORS Podbielski,A. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75944|g840883 BASE COUNT 367 a 296 c 387 g 296 t 3030 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ...C-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUU-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UCCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CC........ .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.saclyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus saccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus saccharolyticus. ORGANISM Staphylococcus saccharolyticus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02922|g455065 BASE COUNT 108 a 91 c 107 g 90 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ...CC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-C CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CN-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sacly2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus saccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus saccharolyticus. ORGANISM Staphylococcus saccharolyticus. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37602|g576608 BASE COUNT 411 a 340 c 447 g 325 t 2853 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAU -GUAY-GC-- UGGN-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-AG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGC- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-C CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUAUA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UKUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAA---GUCG U(N-ACA)AG GUAAG---UC GC-CACAAGG 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.arlett 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus arlettae.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus arlettae. ORGANISM Staphylococcus arlettae. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26888 BASE COUNT 213 a 164 c 238 g 156 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.capitc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus capitis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus capitis. ORGANISM Staphylococcus capitis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26940|g450689 BASE COUNT 214 a 163 c 238 g 155 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAY---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.capitu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus capitis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus capitis. ORGANISM Staphylococcus capitis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26941|g450690 legacy_attribute= biovar:?ureolyticus? BASE COUNT 214 a 163 c 238 g 155 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAY---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.capit2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus capitis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus capitis. ORGANISM Staphylococcus capitis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37599|g576605 BASE COUNT 395 a 327 c 430 g 316 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GS-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AU----CCC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGU-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aureu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02910|g455053 BASE COUNT 102 a 83 c 101 g 78 t 4012 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......G|G 2701 G-CA-CU-C- U-AAG-UU-G A-CN-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CN-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G----AGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aureus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS ., Ehrmann,M., Hertel,C., Jilg,S., Tatzel,R., Zitzelsberger ,H., Liebl,S., Hochberger,M., Shah,J., Lane,D. and Wallnoef ,P.R. Ludwig,W., Kirchof,G., Klugbauer,N., Weizenegger,M., Betzl,D TITLE Bacteria with a low DNA G+C content Complete 23S ribosomal RNA sequences of Gram-positive JOURNAL Syst. Appl. Microbiol. 15, 487-501 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68417 ATCC 12600 (T) = NCTC 8532 = DSM 20231 = NCDO 949 = NCTC 1956 = CCM 885 BASE COUNT 417 a 340 c 453 g 345 t 2821 others ORIGIN 1 .......... .......... .......... ..UUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UA UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aureu4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS Green,C.J. and Vold,B.S. TITLE An unusual rRNA-tRNA gene organization in Staphylococcus aureus JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L36472|g567883 (bases 8528 to 10082) ATCC 12600 (T) = NCTC 8532 = DSM 20231 = NCDO 949 = NCTC 1956 = CCM 885 BASE COUNT 417 a 342 c 452 g 344 t 2821 others ORIGIN 1 .......... .......... .......... ..UUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACA--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus haemolyticus.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus haemolyticus. ORGANISM Staphylococcus haemolyticus. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26896 BASE COUNT 214 a 159 c 236 g 162 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aureu5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37597|g576603 ATCC 12600 (T) = NCTC 8532 = DSM 20231 = NCDO 949 = NCTC 1956 = CCM 885 BASE COUNT 406 a 331 c 436 g 327 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CA... .......... .(.....).. ....GC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aureu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus aureus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus aureus. ORGANISM Staphylococcus aureus. REFERENCE 1 AUTHORS Reading,S., Collins,M.D. and Harland,N. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70648 NCDO 949 = NCTC 8532 = ATCC 12600 (T) = DSM 20231 = NCTC 1956 = CCM 885 BASE COUNT 391 a 317 c 414 g 315 t 2939 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA GA-GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spi.spN26 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spirochaeta sp. str. HIS Oman, N26. ACCESSION No information KEYWORDS No information. SOURCE Spirochaeta sp. str. HIS Oman, N26. ORGANISM Spirochaeta sp. REFERENCE 1 AUTHORS Hookey,J.V., Barrett,S.P., Reed,C.S. and Barber,P. TITLE Phylogeny of human intestinal spirochaetes inferred from 16S rDNA sequence comparisons JOURNAL FEMS Microbiol. Lett. 117, 345-350 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22778|g433653 Former RDP Sids: Spi.spos26 biol_source= human intestine isolate_name= HIS Oman, N26 NB: This does not match Spirochete signature bases BASE COUNT 401 a 335 c 426 g 321 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -GAAC-CC-- UGGC-GGU-G -UGU-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---ACGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAU-G-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CUGG-A--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---AAU---- ---)------ ---------| --GCUC--U- ----UU---- 661 ----A-A--- GAU---G-|A UCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GUC-UGA CGGA|-GCAA CGUC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--CU-CG --)GA-UCGU AAA--CCUC| -GUA-AU-CA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-- U-GA-CGGU- A-CCU-G-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAC-GCUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -CG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UG-CU-- -------A|A -GU-GU-U-G -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UUC 1741 UG--CA---- --GC-(UAA- ---C)G-GA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -CAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AA CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUCUUA- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG---(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UA-A |-AA--UUA- 2281 UG--UUGC-U CG-CA----- ---------- ---------- --UC(---UU ---AAG--)U 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-UAA-GG-A A-CU-G-CCG --GU(-GA-C AA)-CCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-A-G--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAACG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAG--UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GU-- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UU-AC-ACCC -GAU-G-CC- 3121 G-UGG-A-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-U-A --CC-GU-CG A-AGGU-GGG ACA-AA-UC- AUU--GGG-U 3301 G---AAGUC- G-CA-CAA-G UAGCC-GUUC G(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.warne2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus warneri. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus warneri. ORGANISM Staphylococcus warneri. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37603|g576609 BASE COUNT 398 a 326 c 426 g 319 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-CA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-SCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.warner 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus warneri.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus warneri. ORGANISM Staphylococcus warneri. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26903 BASE COUNT 214 a 161 c 237 g 159 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A UCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-CA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sciuri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus sciuri. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus sciuri. ORGANISM Staphylococcus sciuri. REFERENCE 1 AUTHORS Hajek,V., Ludwig,W., Schleifer,K.H., Springer,N., Zitzelsberger,W., Kroppenstedt,R.M. and Kocur,M. TITLE Staphylococcus muscae, a new species isolated from flies JOURNAL Int. J. Syst. Bacteriol. 42, 97-101 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S83569 BASE COUNT 404 a 340 c 452 g 332 t 2848 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --UUG-UUA( G----UAAC- -----U---) GAAC-AA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AA -UA--CAAAG GGC-A-G-C- GA-AUC-C(G 2881 -CGA)GGCC- ---------- AA-GCAAA-U CCCAU-AAAA -UU-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-G- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sciur3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus sciuri.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus sciuri. ORGANISM Staphylococcus sciuri. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26901 BASE COUNT 209 a 162 c 242 g 159 t 3604 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --UUG-UUA( G----UAAC- -----U---) GAAC-AA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.pulver 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus pulvereri str. NT 215 PCM 2443 (T). ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus pulvereri str. NT 215 PCM 2443 (T). ORGANISM Staphylococcus pulvereri. REFERENCE 1 AUTHORS Zakrzewska-Czerwinska,J., Gaszewska-Mastalarz,A., Lis,A., Gamian,A. and Mordarski,M. TITLE Staphylococcus pulvereri sp. nov., isolated from human and animal specimens JOURNAL Int. J. Syst. Bacteriol. 45, 160-172 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U12764|g530854 PCM 2443 (T) = DSM 9930 isolate_name= NT 215 BASE COUNT 269 a 216 c 300 g 220 t 3371 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ......A-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-UG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)AC-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --UUG-UUA( G----UAAC- -----U---) GAAC-AA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGN- -CUNUCUG-- ---------- ---------- ---------G 1501 UCU--NN-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AU----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.auric3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus auricularis str. WK811M ATCC 33753 (T). ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus auricularis str. WK811M ATCC 33753 (T). ORGANISM Staphylococcus auricularis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33753 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37598|g576604 isolate_name= WK811M BASE COUNT 389 a 331 c 432 g 316 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .....G-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----C AG-UGAAA-- ---GGYGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GCG-UAA( G----UAAC- -----U---) GUGC-GC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGYU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGAA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)CCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UCC---CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-UAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACG AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.auricu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus auricularis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus auricularis. ORGANISM Staphylococcus auricularis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26889 BASE COUNT 209 a 163 c 241 g 156 t 3607 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CYU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----C AG-UGAAA-- ---GGYGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GCG-UAA( G----UAAC- -----U---) GUGC-GC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGAA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.auric2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus auricularis str. WK811M ATCC 33753 (T). ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus auricularis str. WK811M ATCC 33753 (T). ORGANISM Staphylococcus auricularis. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33753 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02911|g455054 isolate_name= WK811M BASE COUNT 106 a 89 c 104 g 88 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GRG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-YGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-A-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-YC-GC-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.carnos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus carnosus.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus carnosus. ORGANISM Staphylococcus carnosus. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26891 BASE COUNT 210 a 165 c 241 g 155 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAU---- ---------- -------A-U GC-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UG----C AA-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-UAG( G----UAAC- -----U---) AUGC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.muscae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus muscae str. MB4 CCM 4175. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus muscae str. MB4 CCM 4175. ORGANISM Staphylococcus muscae. REFERENCE 1 AUTHORS Hajek,V., Ludwig,W., Schleifer,K.H., Springer,N., Zitzelsberger,W., Kroppenstedt,R.M. and Kocur,M. TITLE Staphylococcus muscae, a new species isolated from flies JOURNAL Int. J. Syst. Bacteriol. 42, 97-101 (1992) STANDARD No information COMMENTS Organism information Culture collection: CCM 4175 Sequence information (bases 1 to 4376) Corresponding GenBank entry: S83566 isolate_name= MB4 NB: RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 398 a 333 c 442 g 327 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUGCC-GG 481 AU-AAU---- ---------- -------A-U AU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -ACU-A--(- GAGA-)-UAG -U-GUUUU-- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AU -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus sp. ORGANISM Staphylococcus sp. REFERENCE 1 AUTHORS Miah,A., Hutson,R.A. and Collins,M.D. TITLE Ribosomal 16S sequence of a Staphylococcus sp. from a porpoise JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84731|g790506 BASE COUNT 396 a 339 c 450 g 325 t 2866 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAU---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UCU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAC-AU --GUG-UAA( G----UCAC- -----U---) AUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AA--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGC-U-G-C- CA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- -UU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.intmed 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus intermedius.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus intermedius. ORGANISM Staphylococcus intermedius. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26897 BASE COUNT 206 a 166 c 244 g 155 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.schle3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus schleiferi subsp. schleiferi ATCC 43808 (T). ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus schleiferi subsp. schleiferi ATCC 43808 (T). ORGANISM Staphylococcus schleiferi. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26904 ATCC 43808 (T) = DSM 4807 BASE COUNT 205 a 166 c 247 g 153 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.schle2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus schleiferi subsp. schleiferi DSM 4807. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus schleiferi subsp. schleiferi DSM 4807. ORGANISM Staphylococcus schleiferi. REFERENCE 1 AUTHORS Hajek,V., Ludwig,W., Schleifer,K.H., Springer,N., Zitzelsberger,W., Kroppenstedt,R.M. and Kocur,M. TITLE Staphylococcus muscae, a new species isolated from flies JOURNAL Int. J. Syst. Bacteriol. 42, 97-101 (1992) STANDARD No information COMMENTS DSM 4807 = ATCC 43808 (T) BASE COUNT 401 a 344 c 455 g 327 t 2849 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGC- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCAC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GCUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.schlei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus schleiferi subsp. schleiferi DSM 4807. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus schleiferi subsp. schleiferi DSM 4807. ORGANISM Staphylococcus schleiferi. REFERENCE 1 AUTHORS Hajek,V., Ludwig,W., Schleifer,K.H., Springer,N., Zitzelsberger,W., Kroppenstedt,R.M. and Kocur,M. TITLE Staphylococcus muscae, a new species isolated from flies JOURNAL Int. J. Syst. Bacteriol. 42, 97-101 (1992) STANDARD No information COMMENTS DSM 4807 = ATCC 43808 (T) NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de RNA sequencing method: Reverse transcription 5' end determined by: Reverse transcriptase BASE COUNT 405 a 346 c 461 g 333 t 2831 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-YMU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----C AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGC- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCAC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUUU-- CC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GCUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.lugdun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus lugdunensis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus lugdunensis. ORGANISM Staphylococcus lugdunensis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26899 BASE COUNT 214 a 160 c 238 g 159 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAC-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U GU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-AA----U AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-AG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.ligL81 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. L-81. str. L-81. ACCESSION No information KEYWORDS No information. SOURCE str. L-81. str. L-81. ORGANISM str. L-81. REFERENCE 1 AUTHORS Gonzalez,J.M., Whitman,W.B., Hodson,R.E. and Moran,M.A. TITLE Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture JOURNAL Appl. Environ. Microbiol. 62 (12), 4433-4440 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58349|g1718225 biol_source= lignin enrichment culture isolate_name= L-81 BASE COUNT 82 a 77 c 89 g 76 t 4052 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... ..U-GU-GGU -UUAUNU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC ANA-UC-UUG ACN-UC|--- ---------C ---UUUG--- -AC----NAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUC-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GUG------- ----GG-A-| CCA-AG-UGA |---C|N--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-G...... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.haemo3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus haemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus haemolyticus. ORGANISM Staphylococcus haemolyticus. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37600|g576606 ATCC 29970 = CCM 2737 (T) BASE COUNT 396 a 326 c 427 g 319 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GUAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AC --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.haemo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus haemolyticus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus haemolyticus. ORGANISM Staphylococcus haemolyticus. REFERENCE 1 AUTHORS Druel,B., Wiezenegger,M., Ludwig,W., Freney,J., Schleifer,K .H. and Fleurette,N. TITLE Construction of an oligonucleotide probe to differentiate Staphylococcus haemolyticus from Staphylococcus warneri and Staphylococcus hominis JOURNAL Syst. Appl. Microbiol. 15, 535-537 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66100|g434320 ATCC 29970 = CCM 2737 (T) BASE COUNT 413 a 338 c 450 g 341 t 2834 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-UNN|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAU-AC --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGUA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--CU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-G U)--GUAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- C--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.homin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus hominis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus hominis. ORGANISM Staphylococcus hominis. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37601|g576607 ATCC 27844 = DSM 20328 (T) BASE COUNT 396 a 326 c 428 g 318 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UCU---- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCUGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CCU 1981 -UCU-A--(- GAGA-)-UAG -A-AG-UUU- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-G..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.homini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus hominis.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus hominis. ORGANISM Staphylococcus hominis. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26905 BASE COUNT 212 a 162 c 238 g 159 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UCU---- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCUGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.xylosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus xylosus.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus xylosus. ORGANISM Staphylococcus xylosus. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26900 BASE COUNT 213 a 160 c 237 g 160 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAY---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCUGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.homin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus hominis. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus hominis. ORGANISM Staphylococcus hominis. REFERENCE 1 AUTHORS Druel,B., Wiezenegger,M., Ludwig,W., Freney,J., Schleifer,K .H. and Fleurette,N. TITLE Construction of an oligonucleotide probe to differentiate Staphylococcus haemolyticus from Staphylococcus warneri and Staphylococcus hominis JOURNAL Syst. Appl. Microbiol. 15, 535-537 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66101|g434321 ATCC 27844 = DSM 20328 (T) BASE COUNT 412 a 339 c 452 g 339 t 2834 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-C--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----U AG-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCUGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--CU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CCU 1981 -UCU-A--(- GAGA-)-UAG -A-AG-U--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.saprop 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus saprophyticus str. NT75 DSM 20229. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus saprophyticus str. NT75 DSM 20229. ORGANISM Staphylococcus saprophyticus. REFERENCE 1 AUTHORS Gaszewska-Mastalarz,A., Zakrzewska-Czerwinska,J. and Mordarski,M. TITLE Rapid identification of Staphylococcus saprophyticus using an oligonucleotide probe complementary to 16S rRNA JOURNAL Syst. Appl. Microbiol. 18, 123-126 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 20229 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L20250 isolate_name= NT75 BASE COUNT 408 a 340 c 448 g 331 t 2849 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CY-CYUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUGC-- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GUCC- ---------- AU-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sapro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus saprophyticus.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus saprophyticus. ORGANISM Staphylococcus saprophyticus. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26902 BASE COUNT 211 a 160 c 240 g 159 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AY --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.sapro3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus saprophyticus. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus saprophyticus. ORGANISM Staphylococcus saprophyticus. REFERENCE 1 AUTHORS Wilson,K.H. and Hills,H.G. TITLE Staphylococcus sequences JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L37596|g576602 BASE COUNT 407 a 330 c 439 g 322 t 2878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- AGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-G--G-A- ---CCC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCUU-- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG-A-| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AG--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AU-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUAAAAAC 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.aeroph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus "aerophilus".. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus "aerophilus". ORGANISM Staphylococcus "aerophilus". REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS NB: renamed from Paracoccus halodenitrificans ATCC 25843 formerly associated with this sequence; as of 6/24/93, no longer available from ATCC BASE COUNT 399 a 320 c 433 g 329 t 2895 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAYGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U UU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UAAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCNC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-N-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GNAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCCU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN-N-| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-N |-AA--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-UU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AA -UA--CAAAG GGC-A-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AU-GCAAA-U CCCAU-AAAG -UU-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNN- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-A-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-U-A G-CC-GU-CG A-AGGU-GGG ACA-AA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.equorm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus equorum.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus equorum. ORGANISM Staphylococcus equorum. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26895 BASE COUNT 217 a 157 c 235 g 162 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U UU-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UAAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) GUGC-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.kloosi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus kloosii.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus kloosii. ORGANISM Staphylococcus kloosii. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26898 BASE COUNT 211 a 164 c 240 g 155 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGAA-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U GU-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----C AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --CYUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCG-UAA( G----UAAC- -----U---) GUGC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.cohnii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus cohnii.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus cohnii. ORGANISM Staphylococcus cohnii. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26893 BASE COUNT 214 a 161 c 237 g 159 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U UU-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UAA( G----UAAC- -----U---) AUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.caprae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus caprae.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus caprae. ORGANISM Staphylococcus caprae. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26890 BASE COUNT 211 a 160 c 240 g 159 t 3606 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAY---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -AAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUGCC-GG 481 AU-AAC---- ---------- -------A-U UU-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UA----A AG-UGAAA-- ---GAUGG-- ---------- 601 --(------- --UUUUG--- ---)------ ---------| --CUAU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GC|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AC --GUG-UAA( G----UAAC- -----U---) GUGC-AC-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AU-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.A.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.10.2 STP.CASEOLYTICUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.10.2 STP.CASEOLYTICUS_SUBGROUP. ORGANISM 2.16.8.10.2 STP.CASEOLYTICUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stp.caseol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Staphylococcus caseolyticus.. ACCESSION No information KEYWORDS No information. SOURCE Staphylococcus caseolyticus. ORGANISM Staphylococcus caseolyticus. REFERENCE 1 AUTHORS MacLean,I.A. and Carter,P.E. TITLE Phylogenetic analysis using 16S rDNA sequencing of Staphylococci JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26892 BASE COUNT 210 a 166 c 245 g 150 t 3605 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------CRG ACGAGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCUC UGAYG----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U CU-A--G-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GC-AA----U AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UCU---- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACG-UUA( G----UAAC- -----U---) GAAC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sc.roseus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Salinicoccus roseus. ACCESSION No information KEYWORDS No information. SOURCE Salinicoccus roseus. ORGANISM Salinicoccus roseus. REFERENCE 1 AUTHORS Spring,S., Ludwig,W., Marquez,M.C., Ventosa,A. and Schleifer ,K.H. TITLE Halobacillus gen. nov., with descriptions of Halobacillus litoralis sp. nov. and Halobacillus trueperi sp. nov., and transfer of Sporosarcina halophila to Halobacillus halophilus comb. nov. JOURNAL Int. J. Syst. Bacteriol. 46, 492-496 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94559|g1181290 BASE COUNT 379 a 371 c 490 g 303 t 2833 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----C -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---CAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAU---C -AGAC-U-GG 421 -GAU-AA-CC A--------- ------CG-- G(-GAAA-)C -CGUG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------C-C UU-U--U-C- ---CAC-(-- --------AC 541 AG-------- -)-GUG---- GA-AA----A GU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----AUGG-- AUG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GG-GAA-- GA-ACGC-CG --ACG-GGA( G----UAAC- -----U---) GCCC-GU-CG 1081 ---------- -------G-G U-GA-CGGU- A-CCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-UAG-GC -G|-GU-UC- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGC G-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GC-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------UG- C-GAAA-GC- GU-GGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-G G)--CGAAGA 1921 A-CCUUA-CC AAA-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----CAC 1981 -CCU-G--(- GAGA-)-CAG -G-GU-UU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----G----| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-CAGG -UA--CAAAG GGC-A-G-C- UA-AGC-C(G 2881 -CGA)GGCC- ---------- AA-GCGAA-U CCCAU-AAAA -CU-G-UUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-CGG- UA-AC-ACCU -GAA-G-CCG 3121 G-UGG-G-CC -AA-CC---- ---------- ---------- -----(---- -UCUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CG A-AGGU-GGG ACC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GAA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.A.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.10.3 GEMELLA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.10.3 GEMELLA_SUBGROUP. ORGANISM 2.16.8.10.3 GEMELLA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gem.morbil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemella morbillorum. ACCESSION No information KEYWORDS No information. SOURCE Gemella morbillorum. ORGANISM Gemella morbillorum. REFERENCE 1 AUTHORS Whitney,A.M. and O'Connor,S.P. TITLE The phylogenetic relationship of Gemella morbillorum to Gemella haemolysans JOURNAL Int. J. Syst. Bacteriol. 43, 832-838 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14327 BASE COUNT 426 a 324 c 456 g 330 t 2840 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU UUUCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAGA AAAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- GAA--CCU-G C-CUCA---U -AGAC-U-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-G UA-U--U-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AU----A UU-UAAAA-- ---GUUGGU- ---------- 601 --(------- ---UAU---- ---)------ ---------| -GCUAA--C- A--CUA---- 661 ----UGAG-- AUG---G-|C UUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AUG--GA --UAU-GUA( G----UAACU -----A---) UACA-UG-UA 1081 ---------- -------A-G A-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 A-AU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-GA-GAGAA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUUUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -UC-UC---- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- -------GAG -AUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- ---------C ---UGUG--- -AG----GAC 1981 -ACA-A--(- GAGA-)-UUG -U-GUUGU-- UC-------- UGACC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGUUA----- ----GA---| CAC-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-UA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -GA-ACAAAG AGA-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- CA-GCCAA-C CUCAU-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-ACG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GG-UC A-CG-U-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gem.haemo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemella haemolysans. ACCESSION No information KEYWORDS No information. SOURCE Gemella haemolysans. ORGANISM Gemella haemolysans. REFERENCE 1 AUTHORS Whitney,A.M. and O'Connor,S.P. TITLE The phylogenetic relationship of Gemella morbillorum to Gemella haemolysans JOURNAL Int. J. Syst. Bacteriol. 43, 832-838 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14326 BASE COUNT 423 a 324 c 459 g 331 t 2839 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU UUUCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGA AAAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- GAA--CCU-G C-CUCA---U -AGAC-U-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-G CA-U--U-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UG-AU----G UU-UAAAA-- ---GUUGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUAA--C- A--CUA---- 661 ----UGAG-- AUG---G-|C UUUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-AUG--AU --UGU-GUA( G----UAACU -----A---) UACA-CA-GU 1081 ---------- -------A-G A-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 A-AU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-GA-GAGAA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUUUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -UC-UC---- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- -------GAG -AUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- ---------C ---UGUG--- -AG----GAC 1981 -ACA-A--(- GAGA-)-UUG -U-GUUGU-- UC-------- UGACC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGUUA----- ----GA---| CAC-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UCU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-UA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -GA-ACAAAG AGA-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCAAA-C CUCAC-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-ACG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GG-UC A-CG-U-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCU~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Gem.haemol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Gemella haemolysans. ACCESSION No information KEYWORDS No information. SOURCE Gemella haemolysans. ORGANISM Gemella haemolysans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58799 BASE COUNT 418 a 308 c 439 g 333 t 2878 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAN-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------GUU UUUCUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGGA AAAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAA- GAA--CCU-G C-CUCA---U -AGAC-U-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-G CA-U--U-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UG-AU----G UU-UAAAA-- ---GUUGGU- ---------- 601 --(------- ---UUU---- ---)------ ---------| -GCUAA--C- A--CUA---- 661 ----UGAG-- AUG---G-|C UUUGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CN| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-N-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCN-UGA CGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--GCUC| NGUU-GU-UA 1021 --GG-GAA-- GA-AUG--AU --UGU-GUA( G----UAACU -----A---) UACA-CA-GU 1081 ---------- -------A-G A-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGN- NCG-CAG-GU -G|-GU-UU- 1261 A-AU-AAG|U CUG---AUGU G-AAA-GC-C NA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-GA-GAGAA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUUUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -UC-UC---- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- -------GAG -AUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGNUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UA|--- ---------C ---UGUG--- -AG----GAC 1981 -ACA-A--(- GAGA-)-UUG -U-GUUGU-- UC-------- UGACC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GGUUA----- ----GA---| CAC-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UCU- 2281 AG--UUGC-U AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-UA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -GA-ACAAAG AGA-A-G-C- GA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCAAA-C CUCAC-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNNN- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-ACG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GG-UC A-CGGU-GGG ACA-GA-UG- A......... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.A.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.10.4 B.CEREUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.10.4 B.CEREUS_SUBGROUP. ORGANISM 2.16.8.10.4 B.CEREUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spl.dextrs 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporolactobacillus dextrus str. M-15 IAM 12380. ACCESSION No information KEYWORDS No information. SOURCE Sporolactobacillus dextrus str. M-15 IAM 12380. ORGANISM Sporolactobacillus dextrus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16282|g457664 isolate_name= M-15 BASE COUNT 370 a 344 c 459 g 296 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUAU---A -AGAC-U-GG 421 -GAU-AA-CU U--------- ------CG-- G(-GAAA-)C -CGUA-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------U-U UU-C--G-G- ---UUC-(-- --------AC 541 AU-------- -)-GAA---- CC-GA----A AU-GGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-AGU( U----GAAUA -----A---) GCUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-UC-U CG-CGG-C(- UC-A)A-CCG -CG-A-GCG- 1321 -GCCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGAA GAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUUUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAAAG GGU-U-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- AA-GCUAA-U CUCAA-AAAA -CU-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.anthraci 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus anthracis str. Sterne. ACCESSION No information KEYWORDS No information. SOURCE Bacillus anthracis str. Sterne. ORGANISM Bacillus anthracis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE by comparative analysis of small subunit ribosomal RNA sequences Phylogenetic heterogeneity of the genus Bacillus revealed JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55059 isolate_name= Sterne BASE COUNT 365 a 325 c 432 g 300 t 2954 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-N---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--NU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUN -----A---) GCUG-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU N-AAA-GC-C CA-CGG-C(- UN-N)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CN G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GN-NNN-NA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UN-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCN-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-NGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cereus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus cereus str. F4810/72 NCTC 11143. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus str. F4810/72 NCTC 11143. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11143 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55063 isolate_name= F4810/72 BASE COUNT 368 a 327 c 433 g 306 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUA -----A---) GCUG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUNG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GU -N|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUN AG-G------ -------CG- C-GAAA-NC- GU-GGN-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UN--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cereus1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus cereus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE comparative analysis of small subunit ribosomal RNA sequences Phylogenetic heterogeneity of the genus Bacillus revealed by JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55060 NCDO 1771 = NCIMB 9373 = DSM 31 = NCTC 2599 (T) = ATCC 14579 = CCM 2010 = CECT 148 = JCM 2152 = IAM 12605 (T) BASE COUNT 368 a 326 c 442 g 304 t 2936 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUA -----A---) GCUG-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UN--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-N---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cereus4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus cereus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16266|g457636 IAM 12605 (T) = NCIMB 9373 = DSM 31 = NCTC 2599 (T) = ATCC 14579 = NCDO 1771 = CCM 2010 = CECT 148 = JCM 2152 BASE COUNT 383 a 336 c 457 g 310 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUA -----A---) GCUG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.S12 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. S12. str. S12. ACCESSION No information KEYWORDS No information. SOURCE str. S12. str. S12. ORGANISM str. S12. REFERENCE 1 AUTHORS Shi,T., Reeves,R.H., Friedmann,E.I. and Gilichinsky,D.A. TITLE Characterization of bacterial isolates from Siberian permafrost by 16S rDNA Sequencing JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U31491|g1143154 isolate_name= S12 BASE COUNT 210 a 183 c 254 g 183 t 3546 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ........AG |-NUGG---- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AGCCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 GUCA-CU-C- U-AAG-GU-G A-CU-G-NCG --AU(-GCAC AA)-ACC-G- -GNGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-ACUC-AU CAU-G-NC-C CUUNU-G-AN -CU--GGAC- 2821 U-ACA-CA-C GUA--CUACA ANGGA-C-NG -UA--CAAUG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-CAAA -CC-N-ANC- UCAGUUCGGA 2941 U-UGUNGNC- (UNCAAC-U- C)-GACUACA -UGANGC-UG -GAUU-CGC- -UAGNA-NUC 3001 GC-NGA-(UC -AGC-AU)-G NCG-NGGUG- AUUCC-GUN- CCC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thuringi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thuringiensis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thuringiensis. ORGANISM Bacillus thuringiensis. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE by comparative analysis of small subunit ribosomal RNA sequences Phylogenetic heterogeneity of the genus Bacillus revealed JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55062|g40250 NCIMB 9134 (T) = CECT 197 = IAM 12077 = DSM 2046 = ATCC 10792 = CIP 53.137 = CCEB 457 BASE COUNT 363 a 325 c 438 g 297 t 2953 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUN| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-NGU( U----GAAUN -----A---) GCUN-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUNAU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UN-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUN-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UN--AA---- --GU-(UAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.medusa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus medusa. ACCESSION No information KEYWORDS No information. SOURCE Bacillus medusa. ORGANISM Bacillus medusa. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60628 BASE COUNT 348 a 322 c 422 g 283 t 3001 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U NU-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUU---- 661 ----AUGG-- AUN---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--NU-CG --)GG-UCGU NAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACNA-GU --GCU-AGU( U----GAAUA -----A---) GCUN-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUN -UU-GGGC|G UNAA-GCGC- GCG-CNG-GU -G|-GU-UU- 1261 C-UN-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUN-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UG--AA---- --GU-(NAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-NNUN--- CU-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUNN-U CUCAU-NAAA -CC-G-UNC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-UN -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- GAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thuring2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thuringiensis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thuringiensis. ORGANISM Bacillus thuringiensis. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16281|g457643 IAM 12077 = CECT 197 = DSM 2046 = ATCC 10792 = NCIMB 9134 (T) = CIP 53.137 = CCEB 457 BASE COUNT 383 a 336 c 458 g 309 t 2890 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUCAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-U UU-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUA -----A---) GCUG-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.mycoides 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus mycoides. ACCESSION No information KEYWORDS No information. SOURCE Bacillus mycoides. ORGANISM Bacillus mycoides. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55061 BASE COUNT 363 a 322 c 432 g 299 t 2960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UAAG-AG (--CU----- ---------- ---------- 241 --------NG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-U--G-A- ---ACU-(-- --------GC 541 AU-------- -)-AGU---- UC-GA----A AU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 NG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU NAA--ACUN| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( N----GAAUA -----A---) GCUG-GC-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-N-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-NGGC|G UNAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UN-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUN-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNUAG-UGC 1741 UN--AA---- --GU-(UAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- -AA----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-NU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG..... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.cereus3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus cereus str. FDA PCI 213 ATCC 11778. ACCESSION No information KEYWORDS No information. SOURCE Bacillus cereus str. FDA PCI 213 ATCC 11778. ORGANISM Bacillus cereus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11778 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02893|g455036 ATCC 11778 = NCTC 10320 isolate_name= FDA PCI 213 BASE COUNT 94 a 94 c 108 g 78 t 4002 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ......GC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CN-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AUGUC- GUAA-C.... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sp_fish 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS O'hIci,B., Powell,R. and McInerney,J.O. TITLE A novel Bacillus associated with diseased fish JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U11551|g511468 BASE COUNT 326 a 267 c 384 g 265 t 3134 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .UAC-AUGCA A-GUC-GAGC 121 G--NA----U -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---NAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAA---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UUAUACC-GG 481 AU-AAU---- ---------- -------A-U UU-UG-G-A- ---ACU-(-- --------GC 541 AU-------- -)-AGU---- UN-NA----A UU-GGNAA-- ---GGCGU-G ---------- 601 --(------- ---UUGC--- ---)------ ---------| CGGUGU-GC- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GN|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CNA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--C-G GU(--UU-CG --)GGCUUGU AAA--ACUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --GCU-AGU( U----GAAUA -----A---) GUCG-GC--C 1081 ---------- -------A-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUCA-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAGUG- UAU-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGACG- GCCA-ANAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-----(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUN--- -AA----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CU-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAN-N--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC. .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B773 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B773. str. B773. ACCESSION No information KEYWORDS No information. SOURCE str. B773. str. B773. ORGANISM str. B773. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of micro-organisms isolated from subsurface environments JOURNAL Mol. Ecol. 4 (1), 1-10 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13146|g495643 isolate_name= B773 BASE COUNT 57 a 70 c 67 g 46 t 4136 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... ......C-GG -UA--CCAAG AGC-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -CA-CC---- ---------- ---------- -----(---- UUCCC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -CGAGC-C-A G-CC-GC-CU A-AGGU-GGG ANNAGA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.B 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.11 B.SPHAERICUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.11 B.SPHAERICUS_GROUP. ORGANISM 2.16.8.11 B.SPHAERICUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.fusifor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus fusiformis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus fusiformis. ORGANISM Bacillus fusiformis. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14013 BASE COUNT 379 a 339 c 462 g 312 t 2884 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAG--AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U CG----U--- ---GC--(-- --------UC 541 AU-------- -)-GGC---- GA-AA----C AC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|U G-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CC---- --AG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 --CAUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G--UCU--- C--------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14014 BASE COUNT 380 a 340 c 462 g 317 t 2877 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGG-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GGUA---ACC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U GC-UU-U-A- ---CCC-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----C AC-UAAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 --CAUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -GGUUCU--- C--------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. 2362. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. 2362. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14011 isolate_name= 2362 BASE COUNT 381 a 336 c 461 g 318 t 2880 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAG--AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U AU-U--U-A- ---CCC-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----U AU-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 --CAUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G-GU-C--- UC-------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14015 BASE COUNT 379 a 339 c 461 g 313 t 2884 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A -UAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U G--U--U-A- ---CCC-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----C AC-UAAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A--CUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ----GUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G--UCU--- C--------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---A-GUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14016 BASE COUNT 381 a 335 c 458 g 320 t 2882 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C A----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GACA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGA----- -UG|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U AU-U--U-C- ---ACU-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----U AC-UGAAA-- ---GACGG-- ---------- 601 --(------- ---CAUC--- ---)------ ---------| --UCGU--C- G--CUA---- 661 ----UAAG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG --GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- CUUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGA-G-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A--CUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ----GUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -GGUUCU--- C--------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. 2297. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. 2297. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14012 isolate_name= 2297 BASE COUNT 377 a 336 c 463 g 318 t 2882 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAG--AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U GU-A--U-U- ---CCC-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----U AU-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-UG-A- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A--CUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G-GUCU--- C--------- ---UC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GA-U-CGC- -U-GUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. 1013 (T. Gibson) ATCC 14577 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. 1013 (T. Gibson) ATCC 14577 (T). ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Aquino De Muro,M. and Priest,F.G. TITLE Phylogenetic analysis of Bacillus sphaericus and development of an oligonucleotide probe specific for mosquito-pathogenic strains JOURNAL FEMS Microbiol. Lett. 112, 205-210 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14577 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14010 ATCC 14577 (T) = JCM 2502 = CCM 2120 = NCDO 1767 = DSM 28 = NCTC 10338 = NCIMB 9370 isolate_name= 1013 (T. Gibson) BASE COUNT 379 a 340 c 461 g 313 t 2883 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAG--AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- -------G-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U CU-U------ ---CGC-(-- --------UC 541 AU-------- -)-GGG---- AC-AA----U AC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---CUCC--- ---)------ ---------| -GUGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|C GCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --AC--GUA( G----UAAC- -----U---) GGCU-UA-G- 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GG-C|G U-AA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C -A-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -GG--C---- 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A--CUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G-GUUC--- U--------- ---CU----- --(-C----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- ----GG--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GG- AUA-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.fusiform 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus fusiformis. ACCESSION No information KEYWORDS No information. SOURCE Bacillus fusiformis. ORGANISM Bacillus fusiformis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 369 a 331 c 455 g 314 t 2907 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---RAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U GU-U--U-C- ---ACY-(-- --------UC 541 AU-------- -)-GGU---- GA-AA----C AC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|G CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACU-A A|-GGC-GA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNNGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUN-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -A-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN--N| AAC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GN-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- NN-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG AUA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeri8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. IAM 13420. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. IAM 13420. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16280|g457642 isolate_name= IAM 13420 BASE COUNT 375 a 340 c 455 g 314 t 2892 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U UU-U--G-U- ---CCC-(-- --------UC 541 AU-------- -)-GGG---- AC-AA----U AC-UGAAA-- ---GACGG-- ---------- 601 --(------- --UUCUC--- ---)------ ---------| --CUGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-U U-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) GGCU-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G-GUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaeric 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. 1013 (T. Gibson) NCDO 1767. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. 1013 (T. Gibson) NCDO 1767. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCDO 1767 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60639 NCDO 1767 = JCM 2502 = CCM 2120 = ATCC 14577 (T) = DSM 28 = NCTC 10338 = NCIMB 9370 isolate_name= 1013 (T. Gibson) BASE COUNT 347 a 326 c 416 g 295 t 2992 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U UU-U--G-U- ---CCC-(-- --------UC 541 AU-------- -)-GGG---- AC-AA----U AC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUA---- 661 ----UAGG-- AUN---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(N -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UCA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--NU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GUA( G----UAAC- -----U---) NGCU-NU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUNU CC-GGAAUUA -UU-NGGC|G UNAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UNGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UNG-U|GGAA 1381 UU-CCAAGU- GUN-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACN-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGN-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-NAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --NC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUNG-- -AC----CAC 1981 -UNU-A--(- GAGA-)-UAU -N-GUNU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- NA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaer11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sp. ORGANISM Bacillus sp. REFERENCE 1 AUTHORS Cano,R.J. and Borucki,M.K. TITLE Revival and identification of bacterial spores in 25- to 40-million-year-old Dominican amber JOURNAL Science 268, 1060-1064 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L38655|g603909 BASE COUNT 121 a 93 c 146 g 92 t 3924 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(GAA A)-GCC-UCA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GU-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|- U-AA-GCGC- UCG-CAG-GU -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU.... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.sphaer10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus sphaericus str. BCA16. ACCESSION No information KEYWORDS No information. SOURCE Bacillus sphaericus str. BCA16. ORGANISM Bacillus sphaericus. REFERENCE 1 AUTHORS Cano,R.J. and Borucki,M.K. TITLE Revival and identification of bacterial spores in 25- to 40-million-year-old Dominican amber JOURNAL Science 268, 1060-1064 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L38654|g1054869 isolate_name= BCA16 BASE COUNT 372 a 349 c 457 g 304 t 2894 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAG-CC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CCUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-U CU-U--G-U- ---CCC-(-- --------UC 541 AU-------- -)-GGG---- AC-AA----U AC-UGAAA-- ---GACGG-- ---------- 601 --(------- --UUCUC--- ---)------ ---------| --CGGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UC-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UCA UGGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-G CU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGU|- U-AA-GCGC- UCG-CAG-GU -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------AG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-G-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGUUG-- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAU -G-GUUC--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AAC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GU -UA--CAAAC GGU-U-G-C- CA-ACU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crp.latum4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caryophanon latum. ACCESSION No information KEYWORDS No information. SOURCE Caryophanon latum. ORGANISM Caryophanon latum. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70319|g506924 NB: paper does not list this accession number BASE COUNT 370 a 341 c 464 g 310 t 2891 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U C----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- -GA|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------U-G AU-U--U--C ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UG-AA----U CU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --AGC-GUA( G----UAAC- -----U---) GGCG-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UAU-G--(- GAGA-)-CAU -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-NCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-CG A-AGGU-GGG AUA-GA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crp.latum3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caryophanon latum. ACCESSION No information KEYWORDS No information. SOURCE Caryophanon latum. ORGANISM Caryophanon latum. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70318|g507058 NB: paper does not list this accession number BASE COUNT 299 a 288 c 372 g 255 t 3162 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .....G---- ---------- -------U-G AU-U--U--C ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UG-AA----U CU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --AGC-GUA( G----UAAC- -----U---) GGCG-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UG...).... .......... .......... .......... 1441 .......(.. ....)..... ....UCUG-- ---------- ---------- ---------G 1501 UCN--NU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(UAAA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UAU-G--(- GAGA-)-CAU -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GU -UA--CAAAC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crp.tenue 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caryophanon tenue. ACCESSION No information KEYWORDS No information. SOURCE Caryophanon tenue. ORGANISM Caryophanon tenue. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70315|g506500 BASE COUNT 367 a 344 c 461 g 311 t 2893 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUA---U -AGAC-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------U-G UU-U--U--C ---UUC-(-- --------GC 541 AU-------- -)-GAA---G -A-GA----A UU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GC-AA 1021 --GG-GAA-- GA-ACAA-GU --AGC-GUA( G----UAAC- -----U---) GGCG-CU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUNG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGNAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UAU-G--(- GAGA-)-CAU -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-U-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-UN A-AGGU-GGG AU........ .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crp.latum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caryophanon latum. ACCESSION No information KEYWORDS No information. SOURCE Caryophanon latum. ORGANISM Caryophanon latum. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70314|g507011 (bases 6 to 1496) NCIMB 9533 (T) = ATCC 33407 BASE COUNT 372 a 341 c 460 g 313 t 2890 others ORIGIN 1 .......... .......... .......... ........NN AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UUGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGC----GG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUUA---U -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAG---- ---------- -------U-G AU-U--U--C ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UG-AA----U CU-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AU(--UU-CG --)GU-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AYAA-GU --AGC-GUA( G----UAAC- -----U---) GGCG-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGC 1981 -UAU-G--(- GAGA-)-CAU -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAC GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCGAU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CAAG A--GU-UUG- UA-AC-ACCC -GAA-G-NCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-U-A G-CC-GU-CG A-AGGU-GGG AUA-GA-UG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fb.limicol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Filibacter limicola.. ACCESSION No information KEYWORDS No information. SOURCE Filibacter limicola. ORGANISM Filibacter limicola. REFERENCE 1 AUTHORS Farrow,J.A.E. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70317|g507025 BASE COUNT 291 a 277 c 354 g 240 t 3214 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---C -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AGU---- ---------- -------C-C UU-C--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UU-GN----N GU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCAU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-AU-UA 1021 --GG-GAA-- GA-ACAA-AU --GUG-UA.( .......... ......---) .......... 1081 .......... .......... .......GU- A-CCU-C-AU U-AG...... .......... 1141 .....GCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GAGC- UCG-CAG-GC -G|-GUGUU- 1261 UGUU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -NG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG N-NACUU-GA GUG-----CA G-AA-GAGGA NAG-N|GGAA 1381 UU-CCACG.. .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......CG- C--AAA-GC- GUUGGG-GA- 1561 UC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G NN-GAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG -(NNGCAA-C G)--NNNNGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CG..... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG--N| NNN-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGC-U-G-C- GA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCCAA-U CCCAC-AAAA -CC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CCG-CGGUGG AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kur.gibson 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kurthia gibsonii. ACCESSION No information KEYWORDS No information. SOURCE Kurthia gibsonii. ORGANISM Kurthia gibsonii. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70320|g506551 BASE COUNT 373 a 329 c 443 g 312 t 2919 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----- -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --CGAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-U-GG 421 -GAU-AA-CU C--------- ------AG-- G(-GAAA-)C -CUGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-C UU-C--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GUU---- UU-GA----A GU-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACG-UUA( G----GAAA- -----U---) GAAC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-AUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAG AGU-C-G-C- AA-ACU-C(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCAU-AAAA -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kur.zopfi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kurthia zopfii str. F64/100. ACCESSION No information KEYWORDS No information. SOURCE Kurthia zopfii str. F64/100. ORGANISM Kurthia zopfii. REFERENCE 1 AUTHORS Farrow,J.A.E., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic interrelationships of round-spore-forming bacilli containing cell walls based on lysine and the non-spore-forming genera Caryophanon, Exiguobacterium, Kurthia, and Planococcus JOURNAL Int. J. Syst. Bacteriol. 44, 74-82 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70321|g507026 (bases 7 to 1457) NCIMB 9878 (T) = NCTC 10597 = DSM 20580 = ATCC 33043 = ATCC 33403 (T) biol_source= caecum of turkey isolate_name= F64/100; K5 BASE COUNT 370 a 327 c 438 g 314 t 2927 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------AUU AUUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCAA AUAAU----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-C UU-C--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UU-GA----A GU-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- G--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --GCG-UUA( G----GUAA- -----U---) GAAC-GC-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-NC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAG AGU-C-G-C- AA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCUAA-U CUCAU-AAAA -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGN-G-GU -AA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Kur.zopfii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Kurthia zopfii str. F64/100. ACCESSION No information KEYWORDS No information. SOURCE Kurthia zopfii str. F64/100. ORGANISM Kurthia zopfii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58800 ATCC 33403 (T) = NCTC 10597 = DSM 20580 = ATCC 33043 = NCIMB 9878 (T) biol_source= caecum of turkey isolate_name= F64/100; K5 BASE COUNT 385 a 338 c 457 g 334 t 2862 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -------AUU AUUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCAA AUAAU----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGUU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-C UU-C--G-A- ---AUC-(-- --------AC 541 AU-------- -)-GGU---- UU-GA----A GU-UGAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGN--C- G--CUG---- 661 ----UAGN-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --GCG-UUA( G----GUAA- -----U---) GAAC-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA UAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAAUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--CUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UM -M-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAG AGU-C-G-C- AA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCUAA-U CUCAU-AAAA -UC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.B775 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. B775. str. B775. ACCESSION No information KEYWORDS No information. SOURCE str. B775. str. B775. ORGANISM str. B775. REFERENCE 1 AUTHORS Stim,K.P. TITLE A phylogenetic analysis of microorganisms isolated from subsurface environments JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L13147|g495644 isolate_name= B775 BASE COUNT 188 a 180 c 218 g 153 t 3637 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .....UGG-- CAA--CCUGG C-CCUG---U -AGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-AA 481 AU-AAU---- ---------- -------C-C UU-U--U-C- ---CUC-(-- --------AC 541 UU-------- -)-GAG---- GA-GA----U GU-UAAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUA---- 661 ----CAGG-- AUG---G-|G CGCCG----- -GG|G..... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .........C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACG-AGA( G----UGAC- -----U---) GCUC-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AU U-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( C......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 ...U-GC(-C AA-A)GCGC- -CUUUCUA-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-AAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUUC 1801 GGU-C---(G CAA)---G-A C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .....CUACA AUGGA-C-GG -UA--CAGAG GGU-C-G-C- AA-CCC-C(G 2881 -CAA)GGGU- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-C----- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ANCAGA-UG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.insolitu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus insolitus. ACCESSION No information KEYWORDS No information. SOURCE Bacillus insolitus. ORGANISM Bacillus insolitus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60642 BASE COUNT 349 a 327 c 421 g 293 t 2986 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----U -----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NCUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- --A|-UU--C AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---U -AGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UNAUACC-GA 481 AU-AAU---- ---------- -------C-C AU-U--U-C- ---CUC-(-- --------UC 541 AU-------- -)-GGG---- GA-AA----U GU-UAAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUN---- 661 ----CNGG-- AUN---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACG-AGA( G----UNAC- -----U---) NCUN-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-UC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-UCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAGAG GGU-C-G-C- AA-CCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-UNC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACNC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.pasteuri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus pasteurii. ACCESSION No information KEYWORDS No information. SOURCE Bacillus pasteurii. ORGANISM Bacillus pasteurii. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60631 BASE COUNT 341 a 331 c 430 g 283 t 2991 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GANC 121 G--AN----C AA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAGA-AA (--CU----- ---------- ---------- 241 --------NN -)UN-UCUNC N--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----N---- NUG|-UU--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--C-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GG-AA----C UC-UGAAA-- ---GACGGC- ---------- 601 --(------- ---UAU---- ---)------ ---------| -GCUGU--N- A--CUG---- 661 ----CAGG-- AUN---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAN-GG) -C-UNACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACNA-GU --ACA-GGA( G----UNAC- -----U---) GCCU-NU-NC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GC-CU- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGA A-GGCUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UN--GA---- --GC-(AAA- ---C)G-CA- UUAA-GCNCU C|C|G-CCU- G-GGGAGUAC 1801 NGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-NGU -UUAAUU-CG -(AAN-UA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---CGCUG-- -AC----CGG 1981 -UAU-A--(- GAGA-)-UAU -A-CCUU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-UGA |---C|N--G 2161 GU-GG-NGCN UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGU AA-------- CGAG-C--GC NACCC-UU-G |-AC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-N A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CNGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CCCAU-AAAA -CC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-NG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spo.ureae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporosarcina ureae.. ACCESSION No information KEYWORDS No information. SOURCE Sporosarcina ureae. ORGANISM Sporosarcina ureae. REFERENCE 1 AUTHORS Farrow,J.A., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic analysis of the genera Planococcus, Marinococcus and Sporosarcina and their relationships to members of the genus Bacillus JOURNAL FEMS Microbiol. Lett. 72, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62174|g452433 NB: wrong updating of X62175? BASE COUNT 349 a 335 c 437 g 281 t 2974 others ORIGIN 1 .......... .......... .......... ........GG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----UGUU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NC... .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-C AU-C--C-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- AG-AA----U GU-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GGA( G----UNAC- -----U---) NCCN-NU-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-GACUU-GA GUA-----CN G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --N--(UAA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU NG-ACGGG-G -A---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAGUN-- -AC----CGU 1981 -CAU-G--(- GAGA-)-CAU -G-AUNU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN--C| ACU-NG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NAU-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGC-U-N-C- NA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAC-AAAA -UC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- N)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spo.ureae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporosarcina ureae. ACCESSION No information KEYWORDS No information. SOURCE Sporosarcina ureae. ORGANISM Sporosarcina ureae. REFERENCE 1 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their relationships to members of the genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62175 NCIMB 9251 (T) = CCM 684 = ATCC 6473 = ATCC 614 BASE COUNT 327 a 321 c 408 g 267 t 3053 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----UGUU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UUCN---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CNNN---N -AGAN-N-NN 421 -NAU-AA-CU C--------- ------CG-- G(-GAAN-)C -NGGN-G--C UAAUACC-G. 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... ......G--- ---)------ ---------| -GCUAU--C- A--CUN---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-GU --ACA-GGA( G----UNAC- -----U---) NCCN-NU-AC 1081 ---------- -------C-U N-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CNG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-GACUU-GA GUA-----CN G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --N--(UAA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU NG-ACGGG-G -A---CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAGUN-- -AC----CGU 1981 -CAU-G--(- GAGA-)-CAU -G-AUNU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN--C| ACU-NG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-AU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NAU-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAGAG GGC-U-N-C- NA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAC-AAAA -UC-G-UUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- N)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.globispr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus globisporus str. W25 NCIMB 11434. ACCESSION No information KEYWORDS No information. SOURCE Bacillus globisporus str. W25 NCIMB 11434. ORGANISM Bacillus globisporus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60644 NCIMB 11434 = DSM 4 = ATCC 23301 (T) isolate_name= W25 BASE COUNT 330 a 325 c 423 g 290 t 3008 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--GA----A -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAU---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UNAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUN---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-NAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CNCNAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUN| UGUU-GU-AA 1021 --GG-GAA-- GA-ACNA-GU --ACG-GGA( G----UNAC- -----U---) GCCN-GU-GC 1081 ---------- -------C-N U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UN--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-A-CC--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-NGU -UUNAUU-CG -(AAGNNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---CACUN-- -AC----CGG 1981 -UNU-A--(- GAGA-)-UAC -A-UCUN--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|N--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CN-C GUG--CUACN AUGGA-U-GA -UA--CNGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.globisp3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus globisporus str. W25 DSM 4. ACCESSION No information KEYWORDS No information. SOURCE Bacillus globisporus str. W25 DSM 4. ORGANISM Bacillus globisporus. REFERENCE 1 AUTHORS ., Ehrmann,M., Hertel,C., Jilg,S., Tatzel,R., Zitzelsberger ,H., Liebl,S., Hochberger,M., Shah,J., Lane,D. and Wallnoef ,P.R. Ludwig,W., Kirchof,G., Klugbauer,N., Weizenegger,M., Betzl,D TITLE bacteria with a low DNA G+C content Complete 23S ribosomal RNA sequences of Gram-positive JOURNAL Syst. Appl. Microbiol. 15, 487-501 (1992) STANDARD No information COMMENTS Organism information Culture collection: DSM 4 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68415 DSM 4 = ATCC 23301 (T) = NCIMB 11434 isolate_name= W25 BASE COUNT 382 a 359 c 486 g 316 t 2833 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----A -----UGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-A U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAG-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.globisp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus globisporus str. W25 ATCC 23301 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus globisporus str. W25 ATCC 23301 (T). ORGANISM Bacillus globisporus. REFERENCE 1 AUTHORS Fox,G.E., Wisotzkey,J.D. and Jurtshuk,P. TITLE How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity JOURNAL Int. J. Syst. Bacteriol. 42, 166-170 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23301 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54967 ATCC 23301 (T) = DSM 4 = NCIMB 11434 legacy_attribute= and last 17 nucleotides were not determined . legacy_attribute= specific primers near 5' and 3' ends. Therefore the first 126 legacy_attribute= PCR amplified DNA was cloned and sequenced using Bacillus isolate_name= W25 BASE COUNT 348 a 324 c 436 g 276 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .........G 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-A U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C......... |....(...G A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.psycphi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus psychrophilus str. W16A ATCC 23304 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus psychrophilus str. W16A ATCC 23304 (T). ORGANISM Bacillus psychrophilus. REFERENCE 1 AUTHORS Fox,G.E., Wisotzkey,J.D. and Jurtshuk,P. TITLE How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity JOURNAL Int. J. Syst. Bacteriol. 42, 166-170 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23304 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54968 ATCC 23304 (T) = NRS 1530 = IAM 12468 = DSM 3 legacy_attribute= The 5' 80 and 3' 17 nucleotides thus could not be determined. legacy_attribute= and 3' ends, cloned into M13 and sequenced . legacy_attribute= rDNA obtained by PCR using Bacillus specific primers near 5' isolate_name= W16A BASE COUNT 362 a 343 c 460 g 293 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GU--G- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-A U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -G-CCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-A-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.psycphW5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus psychrophilus str. W5 ATCC 23306. ACCESSION No information KEYWORDS No information. SOURCE Bacillus psychrophilus str. W5 ATCC 23306. ORGANISM Bacillus psychrophilus. REFERENCE 1 AUTHORS Fox,G.E., Wisotzkey,J.D. and Jurtshuk,P. TITLE How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity JOURNAL Int. J. Syst. Bacteriol. 42, 166-170 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23306 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54969 legacy_attribute= The 5' 80 and 3' 17 nucleotides thus could not be determined. legacy_attribute= the 5' and 3' ends, cloned into M13 and sequenced. legacy_attribute= rDNA was obtained by PCR with Bacillus specific primers at isolate_name= W5 BASE COUNT 362 a 343 c 460 g 293 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UGA---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GU--G- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-A U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -G-CCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.psycphi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus psychrophilus str. W16A IAM 12468. ACCESSION No information KEYWORDS No information. SOURCE Bacillus psychrophilus str. W16A IAM 12468. ORGANISM Bacillus psychrophilus. REFERENCE 1 AUTHORS Suzuki,T. and Yamasato,K. TITLE Phylogeny of spore-forming lactic acid bacteria based on 16S rRNA gene sequences JOURNAL FEMS Microbiol. Lett. 115, 13-17 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16277|g457639 IAM 12468 = NRS 1530 = DSM 3 = ATCC 23304 (T) isolate_name= W16A BASE COUNT 371 a 348 c 467 g 299 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----A -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAU---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAC-GU --ACG-GGA( G----UAAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-A U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -G-CCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-AAAA -UC-G-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AC-AUC--- ---------- ---------- -----(---- -UAC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.psycphil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus psychrophilus str. W16A ATCC 23304 (T). ACCESSION No information KEYWORDS No information. SOURCE Bacillus psychrophilus str. W16A ATCC 23304 (T). ORGANISM Bacillus psychrophilus. REFERENCE 1 AUTHORS Ash,C., Farrow,J.A., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit ribosomal RNA sequences JOURNAL Lett. Appl. Microbiol. 13, 202-206 (1991) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23304 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X60634 ATCC 23304 (T) = NRS 1530 = IAM 12468 = DSM 3 isolate_name= W16A BASE COUNT 343 a 326 c 423 g 276 t 3008 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~......G AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----A -----UGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAU---- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---C -AGAU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGN-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------C-A GU-U--U-G- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- CA-AA----C UC-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUN---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA UGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUN| UGUU-GU-NA 1021 --GG-GAA-- GA-ANNC-GU --ACG-GGA( G----UNAC- -----U---) GCCC-GU-GC 1081 ---------- -------C-N U-GA-CGGU- A-CCU-N-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UN-A)A-CCG -UG-G-AGG- 1321 -GUNA-UUGG A-AAC-UGGA G-AACUU-GA GUA-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-NAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUNAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUN-- -AC----CGG 1981 -UNU-A--(- GAGA-)-UAC -G-CCNN--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN--C| AGU-NG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAGAG GGU-U-G-C- CN-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAU-NAAA -UC-A-UUC- CCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-N- N)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACC-CNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS F.okeanoko 4376 bp RNA RNA 02-JUL-1998 DEFINITION Flavobacterium okeanokoites.. ACCESSION No information KEYWORDS No information. SOURCE Flavobacterium okeanokoites. ORGANISM Flavobacterium okeanokoites. REFERENCE 1 AUTHORS Nakagawa,Y. TITLE Phylogenetic study of Flavobacterium okeanokoites JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D55729|g893365 BASE COUNT 356 a 359 c 466 g 286 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A CCUUUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CAAUA NGG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --U|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGAU-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GA 481 AU-AGU---- ---------- -------U-U UU-U--G-C- ---CCC-(-- --------UC 541 CU-------- -)-GGG---- N--GA----A AC-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AN-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACC-A-A( G----UAAC- -----U---) ACUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -CUU-A--(- GAGA-)-UAA -G-GCUU--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -CUUG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plc.kocuri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planococcus kocurii. ACCESSION No information KEYWORDS No information. SOURCE Planococcus kocurii. ORGANISM Planococcus kocurii. REFERENCE 1 AUTHORS Farrow,J.A., Ash,C., Wallbanks,S. and Collins,M.D. JOURNAL No information STANDARD No information REFERENCE 2 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their relationships to members of the genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62173 BASE COUNT 348 a 351 c 442 g 284 t 2951 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA-AG-A NG---U---- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AC (--GU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----CA--U- UGU|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGAU-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GA 481 AU-AGU---- ---------- -------U-U GC-G--G-C- ---CUC-(-- --------UC 541 CU-------- -)-GAG---- GC-UG----C AC-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUUU--C- A--CUU---- 661 ----NCAG-- AAU---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A C-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACC-A-A( G----UAAC- -----U---) ACUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|--U-UC- 1261 C-UUAAAG|U CCG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- ---N-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CACUG-- -AC----CGG 1981 -UGU-A--(- GAGA-)-UAC -G-CUUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GN -UA--CAAAG GGC-U-G-C- AA-CCC-C(G 2881 -CGA)GGGC- ---------- AA-GCCAA-U CCCAG-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-NCCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Plc.citreu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Planococcus citreus. ACCESSION No information KEYWORDS No information. SOURCE Planococcus citreus. ORGANISM Planococcus citreus. REFERENCE 1 AUTHORS Farrow,J.A.E., Ash,C., Wallbanks,S. and Collins,M.D. TITLE Phylogenetic Analysis of the Genera Marinococcus, Planococcus and Sporosarcina and their relationships to members of the Genus Bacillus JOURNAL FEMS Microbiol. Lett. 93, 167-172 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62172 BASE COUNT 348 a 353 c 446 g 280 t 2949 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AUAGUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCAUU AUC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --U|-UC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---C -AGAU-C-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GN 481 AU-AGU---- ---------- -------U-U GC-G--G-C- ---CUC-(-- --------UC 541 AU-------- -)-GAG---- GC-UG----C AC-GGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- A--CUN---- 661 ----ACAG-- AAU---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-GA 1021 --GG-GAA-- GA-ACAA-GU --ACC-A-A( G----UAAC- -----U---) ACUG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-C-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-GACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUNC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- ---N-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGCUG-- -AC----CGC 1981 -CUA-G--(- GAGA-)-CUA -G-GCUU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--C| AGC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAG-GU-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG GGC-U-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CCCAG-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.C 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.12 B.THERMOCLOACAE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.12 B.THERMOCLOACAE. ORGANISM 2.16.8.12 B.THERMOCLOACAE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS B.thcloaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacillus thermocloacae. ACCESSION No information KEYWORDS No information. SOURCE Bacillus thermocloacae. ORGANISM Bacillus thermocloacae. REFERENCE 1 AUTHORS Rainey,F.A., Fritze,D. and Stackebrandt,E. TITLE The phylogenetic diversity of thermophilic members of the genus Bacillus as revealed by 16S rDNA JOURNAL FEMS Microbiol. Lett. 115, 205-212 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z26939|g511108 BASE COUNT 368 a 376 c 500 g 283 t 2849 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CG----- -----GGAAG CAGACUGAA- ---------- ---------- ---------- 181 ---------- ---------- ------G-CC (--UU----- ---------- ---------- 241 --------CG -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --GGACGUCU GUGGAA---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGCU-C-GG 421 -GAU-AA-CU A--------- ------GC-- G(-GAAA-)C -GCUA-G--C UAAUACC-GA 481 AU-AAC---- ---------- -------G-C UG-C--G-C- ---ACC-(-- --------GC 541 AU-------- -)-GGC---- GC-GC----A GA-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGC--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GG-GAA-- GA-ACAA-GU --ACC-GGA( G----UAAC- -----U---) GCCG-GU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGG AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUCCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GG-AGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CUC -CUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C --CGUUG--- -AC----CGC 1981 -CCU-A--(- GAGA-)-UAG -G-GUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-CG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-CU-A |-GC--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GC-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG GGU-U-G-C- GA-AGC-G(G 2881 -UGA)CGCG- ---------- GA-GCCAA-U CCCUU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-AG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-CG -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGACG-C-A G-CC-GC-CG A-AGGU-GGG ACC-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.D 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.13 LISTERIA-BROCHOTHRIX_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.13 LISTERIA-BROCHOTHRIX_GROUP. ORGANISM 2.16.8.13 LISTERIA-BROCHOTHRIX_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.monoc4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria monocytogenes str. 5867. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes str. 5867. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02898|g455041 isolate_name= 5867 BASE COUNT 99 a 92 c 108 g 78 t 3999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... ...CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.monoc3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria monocytogenes.. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS ,M., Whitaker,R. and Batt,C.A. Czajka,J., Bsat,N., Piani,M., Russ,W., Sultana,K., Wiedmann TITLE innocua by 16S rRNA genes and intraspecies discrimination of Listeria monocytogenes strains by random amplified polymorphic DNA polymorphisms. Differentiation of Listeria monocytogenes and Listeria JOURNAL Appl. Environ. Microbiol. 59, 304-308 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55472 Former RDP Sids: Lis.monoc2 NB: presumed 5' primer GCCUGCAGGUCGACAACAGAGUUUGAUCAUGG removed presumed 3' primer AAGUCGUAACAAGGUAAA removed BASE COUNT 374 a 336 c 456 g 308 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-A AG-U--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GC----U UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUG-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|U|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AGUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UA- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.monoc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria monocytogenes str. 53 XXIII NCTC 10357. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes str. 53 XXIII NCTC 10357. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS ,R., Smida,J., Dorsch,M. and Stackebrandt,E. Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski TITLE reverse transcriptase sequencing of 16S rRNA Phylogenetic analysis of the genus Listeria based on JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10357 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56153 Former RDP Sids: Lis.moncy2 NCTC 10357 = ATCC 15313 = DSM 20600 isolate_name= 53 XXIII BASE COUNT 368 a 336 c 451 g 301 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-A AG-U--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GC----U UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUN-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUGGA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UG-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUN-GA GUG-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -CA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.monocy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria monocytogenes. ACCESSION No information KEYWORDS No information. SOURCE Listeria monocytogenes. ORGANISM Listeria monocytogenes. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE rRNA Phylogenetic analysis of the lactobacilli based upon 16S JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58822 ATCC 35152 = NCTC 7973 BASE COUNT 383 a 342 c 459 g 319 t 2873 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-R AR-U--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GC----U UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCNC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUG-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG GGU-N-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CCCAU-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UA- AUN-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.innoc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria innocua.. ACCESSION No information KEYWORDS No information. SOURCE Listeria innocua. ORGANISM Listeria innocua. REFERENCE 1 AUTHORS ,M., Whitaker,R. and Batt,C.A. Czajka,J., Bsat,N., Piani,M., Russ,W., Sultana,K., Wiedmann TITLE innocua by 16S rRNA genes and intraspecies discrimination of Listeria monocytogenes strains by random amplified polymorphic DNA polymorphisms. Differentiation of Listeria monocytogenes and Listeria JOURNAL Appl. Environ. Microbiol. 59, 304-308 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S55473 NB: presumed 5' primer GCCUGCAGGUCGACAACAGAGUUUGAUCAUGG removed presumed 3' primer AACUCGUAACAA removed BASE COUNT 373 a 341 c 456 g 304 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-G AG-U--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GC----U CU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUG-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-C AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- --AGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UA- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.innocu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria innocua str. SLCC 3379 NCTC 11288. ACCESSION No information KEYWORDS No information. SOURCE Listeria innocua str. SLCC 3379 NCTC 11288. ORGANISM Listeria innocua. REFERENCE 1 AUTHORS Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski ,R., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11288 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56152 NCTC 11288 = ATCC 33090 (T) isolate_name= SLCC 3379 BASE COUNT 366 a 340 c 449 g 300 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-G AG-U--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GC----U CU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUG-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UCAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UN-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUC-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -NA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.welshi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria welshimeri. ACCESSION No information KEYWORDS No information. SOURCE Listeria welshimeri. ORGANISM Listeria welshimeri. REFERENCE 1 AUTHORS ,R., Smida,J., Dorsch,M. and Stackebrandt,E. Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski TITLE reverse transcriptase sequencing of 16S rRNA Phylogenetic analysis of the genus Listeria based on JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56149 NCTC 11857 = DSM 20650 (T) = CIP 8149 = ATCC 35897 BASE COUNT 376 a 339 c 461 g 308 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGG-- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A GU-G--G-U- ---GGC-(-- --------GC 541 AU-------- -)-GCC---- AC-GG----C UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUG-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -NA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UA- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.seelig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria seeligeri. ACCESSION No information KEYWORDS No information. SOURCE Listeria seeligeri. ORGANISM Listeria seeligeri. REFERENCE 1 AUTHORS ,R., Smida,J., Dorsch,M. and Stackebrandt,E. Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski TITLE reverse transcriptase sequencing of 16S rRNA Phylogenetic analysis of the genus Listeria based on JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56148 NCTC 11856 = CIP 100100 (T) = ATCC 35967 BASE COUNT 368 a 325 c 442 g 297 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-A GG-A--G-U- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- AC-NN----N UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ANAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUG-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUG-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAN 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-NUU- CCC-GGG-NN UNGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCN-CGAG A--GU-UUG- UN-AC-NCCC -GAA-G-UCN 3121 N-UAG-G-GN -NA-CC---- ---------- ---------- -----(---- -U.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.ivanov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria ivanovii str. SLCC 2379 NCTC 11846. ACCESSION No information KEYWORDS No information. SOURCE Listeria ivanovii str. SLCC 2379 NCTC 11846. ORGANISM Listeria ivanovii. REFERENCE 1 AUTHORS ,R., Smida,J., Dorsch,M. and Stackebrandt,E. Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski TITLE reverse transcriptase sequencing of 16S rRNA Phylogenetic analysis of the genus Listeria based on JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11846 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56151 NCTC 11846 = CIP 7842 (T) = ATCC 19119 isolate_name= SLCC 2379 BASE COUNT 373 a 335 c 455 g 302 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---AAU---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUU-G-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGG-G--C UAAUACC-GA 481 AU-GAU---- ---------- -------A-A GU-A--G-U- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- AU-CA----C UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUC---- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-AU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GUAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 N-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UN-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUN-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUNAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -NA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.grayi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria grayi. ACCESSION No information KEYWORDS No information. SOURCE Listeria grayi. ORGANISM Listeria grayi. REFERENCE 1 AUTHORS Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski,R ., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56150 CIP 6818 = NCTC 14014 (T) = DSM 20601 = ATCC 19120 BASE COUNT 377 a 339 c 459 g 309 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----U GA---CCUU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UUGG---- UCG|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGG-- CAA--CCU-G C-CUGU---A -AGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A UC-A----C- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- GC-AG----G UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UU-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUUAGA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCUAA-U CCCAU-AAAA -UC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UN- AUG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lis.murray 4376 bp RNA RNA 02-JUL-1998 DEFINITION Listeria murrayi str. F-9 NCTC 10812. ACCESSION No information KEYWORDS No information. SOURCE Listeria murrayi str. F-9 NCTC 10812. ORGANISM Listeria murrayi. REFERENCE 1 AUTHORS ,R., Smida,J., Dorsch,M. and Stackebrandt,E. Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski TITLE reverse transcriptase sequencing of 16S rRNA Phylogenetic analysis of the genus Listeria based on JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10812 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56154 NCTC 10812 = ATCC 25401 (T) isolate_name= F-9 BASE COUNT 372 a 338 c 457 g 307 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAAAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- NGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----U GA---CCUU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ANG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UUGG---- UCG|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-N C-CUGU---A -AGAU-U-GG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -CGGA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A UC-A--C-U- ---CC--(-- --------GC 541 AU-------- -)-GGA---- GC-AG----G UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGG-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUA-AGA( G----UAAC- -----U---) GCUU-GU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CCCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UG-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUUAGA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-G--(- GAGA-)-CAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NNCA UG|G-UUG-- UCG-UCA|-G C-U---AG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NAA-GU-G A-CU-G-CCG --GU(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GA -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- NA-GCUAA-U CCCAU-AAAA -UU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CU-GC-CG A-AGGU-GGG ACA-GA-UN- AUG-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bro.campes 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brochothrix campestris. ACCESSION No information KEYWORDS No information. SOURCE Brochothrix campestris. ORGANISM Brochothrix campestris. REFERENCE 1 AUTHORS Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski ,R., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56156 BASE COUNT 385 a 334 c 449 g 302 t 2906 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UNACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|--U--- AAUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-N C-CUCA---C -AGCU-G-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGAU-G--C UAAUACC-GA 481 AU-GUG---- ---------- -------C-- UG-A--A-C- ---AUC-(-- --------AU 541 AA-------- -)-GAU---- GU-UC----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UGAG-- AUG---G-|A GCCGC----- -GC|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --GUG-AGA( G----UAAC- -----U---) GUUC-AC-CC 1081 ---------- -------C-U N-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUAAG-UGC 1741 UG--CA---- --GU-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAU 1981 -UCU-G--(- GAGA-)-CAG -A-ACUA--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(NNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-GU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AA -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -UN-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UUU-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CC A-AGGU-GGG AUA-GA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bro.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brochothrix thermosphacta. ACCESSION No information KEYWORDS No information. SOURCE Brochothrix thermosphacta. ORGANISM Brochothrix thermosphacta. REFERENCE 1 AUTHORS Woese,C.R. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58798 ATCC 11509 = NCDO 1676 = DSM 20171 (T) BASE COUNT 387 a 344 c 453 g 321 t 2871 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUCUAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCN-G C-CUCA---C -AGCU-G-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGAU-G--C UAAUACC-GN 481 AA-UGU---- ---------- -------G-C UG-A--A-C- ---AUC-(-- --------AU 541 AA-------- -)-GAU---- GU-UC----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUG---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GC|----UG G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAU-GG --GUG-AGA( G----UAAC- -----U---) GUUC-AC-CN 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UAAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACG-CUG AG-G------ -------CG- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAU 1981 -UCU-G--(- GAGA-)-CAG -A-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AA -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-U CCCAU-AAAA -UU-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUA-CGGUG- AAUAC-GUU- CCC-GGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UUU-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CU A-AGGU-GGG AUA-GA-CN- ACN-NGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bro.therm2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Brochothrix thermosphacta. ACCESSION No information KEYWORDS No information. SOURCE Brochothrix thermosphacta. ORGANISM Brochothrix thermosphacta. REFERENCE 1 AUTHORS Collins,M.D., Wallbanks,S., Lane,D.J., Shah,J.O., Nietupski ,R., Smida,J., Dorsch,M. and Stackebrandt,E. TITLE Phylogenetic analysis of the genus Listeria based on reverse transcriptase sequencing of 16S rRNA JOURNAL Int. J. Syst. Bacteriol. 41, 240-246 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56155 NCDO 1676 = DSM 20171 (T) = ATCC 11509 BASE COUNT 363 a 331 c 436 g 302 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .....UAACG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- GGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C -----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAA---- --G|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- NAA--CCU-N C-CUCA---C -AGCU-G-GG 421 -GAU-AA-CA U--------- ------CG-- A(-GAAA-)U -CGAU-G--C UAAUACC-GA 481 A--UGU---- ---------- -------G-C UG-A--A-C- ---AUC-(-- --------AU 541 AA-------- -)-GAU---- GU-UC----A AG-UGAAA-- ---GACGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUG---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GC|----UG G--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|N-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUN| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAU-GG --GUG-AGA( G----UAAC- -----U---) GUUC-AC-CC 1081 ---------- -------C-U U-NA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -UU-GGGC|G UNAA-GCGC- GCG-CAG-GC -G|-GU-CU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UG-G)G-CCG -GG-N-NGG- 1321 -GUGA-UUGG A-AAC-UGGG A-GACUU-GA GGA-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-N UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGC A--GU-CU-- -------N|A -GU-GU-UAG -GG-GGU--- ---------- 1681 -(-GU-CC)- ---------- ---------- -G-------- -------CCC -CUUAG-UGC 1741 UN--CA---- --GU-(UCN- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU NG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAU 1981 -UCU-G--(- GAGA-)-CAG -A-ACUG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NNCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-AU--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GU-G A-CU-G-CCG --GU(-G--U NA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-AA -UA--CAAAG GGU-C-G-C- GA-AGC-C(G 2881 -CGA)GGUN- ---------- GA-GCCAA-U CCCAU-AAAA -UU-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUN-AUC 3001 GU-AGA-(UC -AGC-AU)-G CUN-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC CAAA-G-CCG 3121 G-UUU-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CG .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.E 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.14 AEROCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.14 AEROCOCCUS_GROUP. ORGANISM 2.16.8.14 AEROCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Abt.defect 4376 bp RNA RNA 02-JUL-1998 DEFINITION Abiotrophia defectiva str. SC10 ATCC 49176. ACCESSION No information KEYWORDS No information. SOURCE Abiotrophia defectiva str. SC10 ATCC 49176. ORGANISM Abiotrophia defectiva. REFERENCE 1 AUTHORS Kawamura,Y., Hou,X.G., Sultana,F., Liu,S., Yamamoto,H. and Ezaki,T. TITLE Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively JOURNAL Int. J. Syst. Bacteriol. 45, 798-803 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49176 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50541 ATCC 49176 = DSM 9849 = CIP 103242 = GIFU 12707 isolate_name= SC10 BASE COUNT 365 a 312 c 439 g 289 t 2971 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C C----GC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- GACUAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUGG UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -GG|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AUAGGAC--- ---------- -------A-U GG-N--A-U- ---CAC-(-- --------AU 541 GA-------- -)-UUC---- AG-UG----A GG-AAA---- ---GGUGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUAU--C- G--CUA---- 661 ----AGAG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAG-GN) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-CG --CAU-AGA( G----UAAC- -----U---) GCUA-UG-CG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GUG-UAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGG--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CCC -UUCAG-UGC 1741 UG--GA---- --GU-(UAA- ---N)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G NU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAC--- GAC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GU-U--- UU-------- ---UU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AC---| GUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGC-A-G-C- GA-ACU-N(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CUCUA-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Glc.sangui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Globicatella sanguis.. ACCESSION No information KEYWORDS No information. SOURCE Globicatella sanguis. ORGANISM Globicatella sanguis. REFERENCE 1 AUTHORS Collins,M.D., Aguirre,M., Facklam,R.R., Shallcross,J. and Williams,A.M. TITLE Globicatella sanguis gen.nov., sp.nov., a new gram-positive catalase-negative bacterium from human sources. JOURNAL J. Appl. Bacteriol. 73, 433-437 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S50214 BASE COUNT 372 a 319 c 414 g 294 t 2977 others ORIGIN 1 .......... .......... .......... .......AUG AGAGUU(A-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C C----AC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AACGAG-AA (--CU----- ---------- ---------- 241 --------UG -)UU-CUGGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- -GG|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- GAA--CCU-G C-CCUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------C-A AN-U--U-A- ---ACC-(-- --------GC 541 CU-------- -)-GGU---- UA-AG----U UG-GGAAA-- ---GGUGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCAU--C- A--UUA---- 661 ----AAGG-- AUG---G-|C CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 NG-UA-AG-( GU-NAC-GG) -C-UUACC-A A|-GGC-GA- UNA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CCG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCAC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-CU --ACU-AGA( G----GAAA- -----U---) GUUN-GU-NG 1081 ---------- -------A-U U-NA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUNC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UNAA-GGGA- GCG-CAG-GU -G|-GU-UU- 1261 C-UN-NAG|U CUN---AUGU N-AAA-GC-C CN-CGG-C(- UN-N)A-CCG -UN-N-NGG- 1321 -GUCN-UUGG A-AAC-UGGG N-NACUUCGA GUG-----CN G-AA-GAGGA AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCNN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CCC -UNCAG-UGC 1741 UN--GC---- --GU-(NAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUN -AAA-GGAAU UG-ACGGG-G -N-C-C---G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------N ---UNUUG-- -CA----UAU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAA--- A--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-UA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- UA-ACU-C(G 2881 -CAA)GAGC- ---------- AU-GCCAA-U CUCUA-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGN-NN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -NAA-G-CCG 3121 G-UGC-C-UG -NA-CC.... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Abt.adiacn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Abiotrophia adiacens str. GaD ATCC 49175. ACCESSION No information KEYWORDS No information. SOURCE Abiotrophia adiacens str. GaD ATCC 49175. ORGANISM Abiotrophia adiacens. REFERENCE 1 AUTHORS Kawamura,Y., Hou,X.G., Sultana,F., Liu,S., Yamamoto,H. and Ezaki,T. TITLE Transfer of Streptococcus adjacens and Streptococcus defectivus to Abiotrophia gen. nov. as Abiotrophia adiacens comb. nov. and Abiotrophia defectiva comb. nov., respectively JOURNAL Int. J. Syst. Bacteriol. 45, 798-803 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49175 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D50540 Former RDP Sids: Abt.adjacn ATCC 49175 = DSM 9848 = CIP 103243 = GIFU 12706 isolate_name= GaD BASE COUNT 359 a 322 c 427 g 292 t 2976 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AN----A -----GC--- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GACCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGGU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- --U|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---C -ANAG-G-GG 421 -GAU-AA-CA U--------- ------CC-- G(-GAAA-)C -GGAU-G--C UAAAACC-GC 481 AUAGGUC--- ---------- -------U-U CG-A--A-C- ---CGC-(-- --------AU 541 GG-------- -)-UUU---- GA-AG----A GG-AAA---- ---AGAGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUUC--U- G--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AC--GG) -C-UCACC-A A|-GGC-CG- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GCA A)-GUC-UNA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GU --GCU-AGA( G----UAAC- -----U---) GUUA-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-NU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---N)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---GGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGC-A-G-C- GA-ACU-N(G 2881 -CGA)GGGU- ---------- AA-GCGAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aer.virida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aerococcus viridans. ACCESSION No information KEYWORDS No information. SOURCE Aerococcus viridans. ORGANISM Aerococcus viridans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58797 ATCC 11563 = DSM 20340 (T) BASE COUNT 399 a 336 c 444 g 331 t 2866 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUCAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----AGAU- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- GAA--UCU-A C-CUAU---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-U--C-U- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- AG-AA----G AU-UGAAA-- ---GACGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUAG-- AUG---A-|C CUUGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-AU-AA 1021 --GA-GAA-- GA-ACAA-AU --UGU-AGA( G----UAAC- -----U---) GCUA-CA-GU 1081 ---------- -------C-U U-GA-CGGU- A-UCU-U-AU C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-AACUU-GA GUA-----CA G-AA-GAGGA AUG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CAUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -CCU-A--(- GAGA-)-UAG -G-GNUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-CU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG ACA-GA-UG- AUU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aer.urinae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Aerococcus urinae. ACCESSION No information KEYWORDS No information. SOURCE Aerococcus urinae. ORGANISM Aerococcus urinae. REFERENCE 1 AUTHORS Aguirre,M. and Collins,M.D. TITLE Phylogenetic analysis of some aerococcus-like organisms from urinary tract infections: Description of Aerococcus urinae sp. nov JOURNAL J. Gen. Microbiol. 138, 401-405 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M77819 NCFB 2893 (T) = NCTC 12142 = ATCC 51268 BASE COUNT 379 a 341 c 443 g 310 t 2903 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AA----C -----CGAC- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAC---- --G|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- GAA--CCU-A C-CGAU---A -AGCG-G-GG 421 -GAC-AA-CA U--------- ------CC-- G(-GAAA-)C -GGGU-G--C UAAUACC-GC 481 AU-AGG---- ---------- -------A-A AG-G--U-C- ---ACC-(-- --------NC 541 AU-------- -)-GGU---- GA-CC----U UU-GGAAA-- ---GACGGC- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----AUCG-- AUG---G-|C CUUGC----- -NG|----UG C--AUUA-G- CUC-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-GC-(GCA A)-GCC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACAA-AU --UGG-AGA( G----UAAC- -----U---) GCUC-CA-GU 1081 ---------- -------C-U U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGG- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG N-AACUU-GA GUA-----CA G-AA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-CA CUGACG-CUG AG-G------ -------CC- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|N -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CCC -UUCAG-UGC 1741 CG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---GUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CNA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-CAG-C- GA-CCU-U(G 2881 -UGA)AAGC- ---------- AA-GCGAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCU -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-NNG ACA-GA-UA- UU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15 LACTOBACILLI. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15 LACTOBACILLI. ORGANISM 2.16.8.15 LACTOBACILLI. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.1 WEI.VIRIDESCENS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.1 WEI.VIRIDESCENS_SUBGROUP. ORGANISM 2.16.8.15.1 WEI.VIRIDESCENS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.viride 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella viridescens str. S38A ATCC 12706. ACCESSION No information KEYWORDS No information. SOURCE Weissella viridescens str. S38A ATCC 12706. ORGANISM Weissella viridescens. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 12706 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23040 Former RDP Sids: L.viridesc ATCC 12706 = JCM 1174 = NCDO 1655 (T) = DSM 20410 = NCIMB 8965 (T) = CCM 56 isolate_name= S38A NB: former name Lactobacillus viridescens BASE COUNT 426 a 334 c 436 g 351 t 2829 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UACAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---UGGUC CAACUGAUUU GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ------AGAU AUGACGAUGG ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-A C-CUCU---U -AGCA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-C UA-A--U-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UA-UU----A GU-UAAAA-- ---GNUGGU- ---------- 601 --(------- ----CUU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCCAC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UAAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CCG---AAGU G-AAA-GC-C CA-CAG-C(- UU-A)A-CUG -UG-G-AAG- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUAAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UUC-A--(- GAGA-)-UGA -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- AC-GCGAA-U CUCUU-AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A A-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.virid1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella viridescens str. S38A NCDO 1655 (T). ACCESSION No information KEYWORDS No information. SOURCE Weissella viridescens str. S38A NCDO 1655 (T). ORGANISM Weissella viridescens. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide sequence of 16S ribosomal RNA from Lactobacillus viridescens and Lactobacillus confusus JOURNAL Nucleic Acids Res. 18, 3402-3402 (1990) STANDARD No information COMMENTS Organism information Culture collection: NCDO 1655 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52568 Former RDP Sids: L.virides1 NCDO 1655 (T) = JCM 1174 = DSM 20410 = ATCC 12706 = NCIMB 8965 (T) = CCM 56 isolate_name= S38A NB: former name Lactobacillus viridescen BASE COUNT 386 a 317 c 426 g 331 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UCAAAAUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--N AUNC-NUGCN A-GUC-GAAC 121 G--CU----U UG---UGGUC CAANUGANNU GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------NG -)CN------ ---------- ---------- ---------- ---------- 301 ---------- -----GAGAU AUGANGAUGG ACAUUG---- NAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -NC-GUGGG- AAA--CCU-A C-CUCU---U -AGNN-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AAGU-G--C UNAUACC-GU 481 AU-AAC---- ---------- -------A-C UA-A--U-A- ---ACC-(-- --------GC 541 AN-------- -)-GGU---- NN-UU----A GU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----CUU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCNGC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UN-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UNAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CCG---AAGU G-AAA-GC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAG- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-UAA-CN- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--N 1621 AAC-N-AUGA G--UG-CU-- -------A|G -AU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNAAG-UGU 1741 CG--NN---- --NC-(UNA- ---C)G-CN- UUNA-GCNCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UUC-A--(- GAGA-)-UGA -A-GCUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UM-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- NC-GCGAA-U CUCUU-NAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A A-CC-GU-CU A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.virid2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella viridescens str. S38A JCM 1174. ACCESSION No information KEYWORDS No information. SOURCE Weissella viridescens str. S38A JCM 1174. ORGANISM Weissella viridescens. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: JCM 1174 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31699|g497814 Former RDP Sids: L.virides2 JCM 1174 = NCDO 1655 (T) = DSM 20410 = ATCC 12706 = NCIMB 8965 (T) = CCM 56 isolate_name= S38A NB: former name Lactobacillus viridescens BASE COUNT 60 a 61 c 62 g 46 t 4147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .........G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- AC-GCGAA-U CUCUU-AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.minor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella minor. ACCESSION No information KEYWORDS No information. SOURCE Weissella minor. ORGANISM Weissella minor. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide Sequence of 16S Ribosomal RNA from Lactobacillus kandleri and Lactobacillus minor. JOURNAL Nucleic Acids Res. 18, 3401-3401 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52569 Former RDP Sids: L.mino1973 NB: former name Lactobacillus minor BASE COUNT 386 a 319 c 432 g 334 t 2905 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UCAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCN A-GUC-GAAC 121 G--CU----U UG---UGGUU CAANUGAUAU GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CN-C---- ---------- ---------- ---------- ---------- 301 ---------- ------GGAU UUGAAGAUGA ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -NC-GUGGG- AAA--CCU-A C-CUCU---U -AGCN-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AAGU-G--C UNAUACC-GC 481 AU-NAU---- ---------- -------A-C UG-A--U-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NN-UN----A GU-NGAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCCGC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UN-NA 781 N-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACNAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACNC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CN --UUG-AGA( G----UNAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-NG--AAAG ---------G 1141 -AACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-NG- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CA-CAG-C(- UN-A)A-CUG -UG-G-AAG- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNAAG-UGU 1741 CG--CA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UUC-N--(- GAGA-)-UGA -A-GCUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- NC-GCGAA-U CUCUU-AAAA -CU-N-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A A-CC-GU-CU A-AGGU-GGG ACA-GA-G.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.minor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella minor. ACCESSION No information KEYWORDS No information. SOURCE Weissella minor. ORGANISM Weissella minor. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23039 Former RDP Sids: L.minor ATCC 35412 = NCDO 2780 = DSM 20014 (T) NB: former name Lactobacillus minor BASE COUNT 414 a 320 c 431 g 345 t 2866 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---UGGUU CAACUGAUAU GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ------GGAU UUGAAGAUGA ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-N C-CUCU---U -AGCG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-C UG-A--U-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UA-UC----A GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAN-- AUG---G-|U CCCNC----- -GG|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UAAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UG- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CA-CAG-C(- UU-A)A-CUG -UG-G-AAG- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUAAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UUC-A--(- GAGA-)-UGA -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- AC-GCGAA-U CUCUU-AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A A-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-A..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.haltol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella halotolerans str. R61 ATCC 35410. ACCESSION No information KEYWORDS No information. SOURCE Weissella halotolerans str. R61 ATCC 35410. ORGANISM Weissella halotolerans. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35410 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23037 Former RDP Sids: L.halotole ATCC 35410 = DSM 20190 (T) isolate_name= R61 NB: former name Lactobacillus halotolerans BASE COUNT 406 a 329 c 437 g 328 t 2876 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAN -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CC----U UG---UCGUU CUACUGAUUU AGA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ------AAUA CUGACGUAGA ACUAUA---- CAA|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- AAA--CCN-N C-CUCU---U -AGUA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGGN-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CG-A--U-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UA-UC----G CU-UGAAA-- ---GGUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAC--C- G--CUA---- 661 ----AGAG-- AUG---G-|U CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-N A|-GAC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NUN-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCN-GN-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-UA --CUA-AGA( G----UAAC- -----U---) GUUU-AG-UA 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CN-CAG-C(- UU-A)A-CUG -UG-G-NAG- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -C-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UUG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CNAAG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -CUC-A--(- GAGA-)-UGA -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -UAA)GGGC- ---------- AC-GCGAA-U CUCUU-AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUGGGC- (UGCAAC-U- C)-GCCCNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACN--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.kandl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella kandleri. ACCESSION No information KEYWORDS No information. SOURCE Weissella kandleri. ORGANISM Weissella kandleri. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide Sequence of 16S Ribosomal RNA from Lactobacillus kandleri and Lactobacillus minor. JOURNAL Nucleic Acids Res. 18, 3401-3401 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52570 Former RDP Sids: L.kandler2 NCDO 2753 = ATCC 51149 = DSM 20593 NB: former name Lactobacillus kandleri BASE COUNT 391 a 324 c 429 g 329 t 2903 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCN A-GUC-GAAC 121 G--CA----C UG---UGGUU CAAAUGAGAU GA-------- ---------- ---------- 181 ---------- ---------- -----GA-AG (--CU----- ---------- ---------- 241 --------UG -)CU--C--- ---------- ---------- ---------- ---------- 301 ---------- -------AAG UCAAAUGCCA ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---NAC -NC-GUGGG- AAA--CCU-A C-CUCU---U -AGCN-G-GG 421 -GAU-AA-CA U--------- ------CU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------N-A UA-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-NGU---- NN-NN----A UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UNACC-A A|-GAC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACNAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACNC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UNAC- -----U---) GUUC-AA-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-NGG-C(- UU-A)A-CCG -AG-N-NAU- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GNAA-GU- GU-GGG-UA- 1561 GC-UAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-UCG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUGAG-UGG 1741 CG--AA---- --NC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCC-A--(- GAGA-)-UGG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- CA-AGC-C(G 2881 -CGA)GGGU- ---------- GC-GCAAA-U CUCUU-AAAG -CU-N-GUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCNC- GUN-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGA-G-GU -NA-CCN--- ---------- ---------- -----(---- -NUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.kandlr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella kandleri. ACCESSION No information KEYWORDS No information. SOURCE Weissella kandleri. ORGANISM Weissella kandleri. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23038 Former RDP Sids: L.kandleri DSM 20593 = ATCC 51149 = NCDO 2753 NB: former name Lactobacillus kandleri BASE COUNT 411 a 326 c 436 g 336 t 2867 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C UG---UGGUU GAAAUGAGAU GA-------- ---------- ---------- 181 ---------- ---------- -----GA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UC--- ---------- ---------- ---------- ---------- 301 ---------- -------AAG UCAAAUGCCA ACAUUG---- CAG|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-N C-CUCU---U -AGCA-G-GG 421 -GAU-AA-CA U--------- ------CU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A UA-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UG----A UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCCNC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AUA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UAAC- -----U---) GUUC-AA-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-N-NAU- 1321 -UGCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-NNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-UCG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUGAG-UGG 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCC-A--(- GAGA-)-UGG -A-GNUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GU---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGC-A-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GC-GCAAA-U CUCUU-AAAG -CU-U-GUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.pmesen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella paramesenteroides. ACCESSION No information KEYWORDS No information. SOURCE Weissella paramesenteroides. ORGANISM Weissella paramesenteroides. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23033 Former RDP Sids: Lc.prmesen DSM 20288 = ATCC 33313 = NCFB 803 NB: former name Leuconostoc paramesenteroides BASE COUNT 404 a 326 c 435 g 340 t 2871 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAAUG AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---UCUUU AACUGAUAUG A--------- ---------- ---------- 181 ---------- ---------- -----AG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------G AUUUGAUUUU AUCUGA---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCN-R C-CUCU---U -AGCA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- -------A-C CA-A--C-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NG-UN----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|A CCCNC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-NN-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-AU-AA 1021 --GA-GAA-- GA-ACGG-CA --CUG-AGA( G----UAAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAU- 1321 -GGCU-UUGG A-AAC-UGGA U-GACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UCG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUGAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CUUG--- -CU----AAU 1981 -CCU-A--(- GAAA-)-UAG -G-ANGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAACG AGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GC-GCUAA-U CUCUU-AAAG -UA-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.hellen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella hellenica. ACCESSION No information KEYWORDS No information. SOURCE Weissella hellenica. ORGANISM Weissella hellenica. REFERENCE 1 AUTHORS Collins,M.D., Samelis,J., Metaxopoulos,J. and Wallbanks,S. TITLE Taxonomic studies on some leuconostoc-like organisms from fermented sausages: description of a new genus Weissella for the Leuconostoc paramesenteroides group of species JOURNAL J. Appl. Bacteriol. 75, 595-603 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S67831|g459398 NB: This sequence comes from Fig. 1. GB entry incorrectly states organism name as Leuconostoc paramesenteroides BASE COUNT 406 a 330 c 440 g 351 t 2849 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-C---A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---UGCUU AAUUGAUAUG AC-------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUUGAUUUUU UGAUUU---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCU---U -AGCA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GU 481 AU-AAU---- ---------- -------A-C CA-A--C-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UG-UU----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-AU-AA 1021 --GA-GAA-- GA-ACGG-CA --CUG-AGA( G----UAAC- -----U---) GUUC-AG-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAU- 1321 -UGCU-UUGG A-AAC-UGGA U-GACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-UCG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUGAG-UGU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUUG--- -AC----AAC 1981 -GCU-A--(- GAAA-)-UAG -C-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-UA -UA--CAACG AGU-C-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- AC-GCUAA-U CUCUU-AAAG -UA-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGU AGCC--GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.confu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella confusus. ACCESSION No information KEYWORDS No information. SOURCE Weissella confusus. ORGANISM Weissella confusus. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide sequence of 16S ribosomal RNA from Lactobacillus viridescens and Lactobacillus confusus. JOURNAL Nucleic Acids Res. 18, 3402-3402 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52567 Former RDP Sids: L.confusu2 NCDO 1586 (T) = JCM 1093 = NRRL B-1064 = ATCC 10881 = NCIMB 9311 = DSM 20196 NB: former name Lactobacillus confusus BASE COUNT 354 a 321 c 437 g 331 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...CAAAUNG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCN A-GUC-GAAC 121 G--CU----N NG---UGGUN NAACUGAUUN GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-N---- ---------- ---------- ---------- ---------- 301 ---------- ------AGAU AUGACGAUGG ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---NNC -NC-GUCGG- AAA--CCU-A C-CUCU---U -NGCN-G-GG 421 -GAU-NA-CN U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UNAUACC-GU 481 NU-AAC---- ---------- -------N-A UG-A--C-A- ---ACC-(-- --------GC 541 NU-------- -)-GGU---- NN-UG----A NU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUN---- 661 ----AGAG-- AUG---G-|U CCNGC----- -GG|----UG C--NUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-NAU-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-N NCG)--GCCC -NUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-NAUCUU C-CNCNAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU NAA--ACNC| UGUU-GU-NA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----NNAC- -----U---) GUUC-AA-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-NG--AAAG ---------G 1141 -AACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAU- 1321 -UGCU-UUGG A-AAC-UGGA U-GACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAC- N-CC-GU--N 1621 AAC-N-AUGA G--UG-CU-- -------A|G -GU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNAAG-UGC 1741 CG--NA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUUG--- -AC----NAC 1981 -UCC-A--(- GAGA-)-UGG -A-GCGU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGC-G-UA -UA--CNACG AGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UN-U-GUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 NCACCGCCC- GUC-NCA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.confus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella confusus. ACCESSION No information KEYWORDS No information. SOURCE Weissella confusus. ORGANISM Weissella confusus. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE Phylogenetic structure of the "leuconostocs": An interesting case of a rapidly evolving organism JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23036 Former RDP Sids: L.confusus ATCC 10881 = JCM 1093 = NRRL B-1064 = NCIMB 9311 = DSM 20196 = NCDO 1586 (T) NB: former name Lactobacillus confusus BASE COUNT 407 a 325 c 440 g 339 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCCAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---UGGUU CAACUGAUUU GAA------- ---------- ---------- 181 ---------- ---------- ------G-AG (--CU----- ---------- ---------- 241 --------UG -)CU-C---- ---------- ---------- ---------- ---------- 301 ---------- ------AGAU AUGACGAUGG ACAUUG---- CAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- AAA--CCN-A C-CUCU---U -AGCA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A UG-A--C-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NG-UN----A UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|U CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-NN-GU 961 G-U-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACAC| UGUU-GU-AA 1021 --GA-GAA-- GA-AUGA-CA --UUG-AGA( G----UAAC- -----U---) GUUC-AA-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -AACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUUC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU G-AAA-GC-C CU-CAG-C(- UC-A)A-CUG -AG-G-AAU- 1321 -UGCU-UUGG A-AAC-UGGA U-GACUU-GA GUG-----CA G-UA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-NAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UUG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUAAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUUG--- -AC----AAC 1981 -UCC-A--(- GAGA-)-UGG -A-GNGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- AA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Wei.confu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Weissella confusus. ACCESSION No information KEYWORDS No information. SOURCE Weissella confusus. ORGANISM Weissella confusus. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31684|g497802 JCM 1093 = NRRL B-1064 = ATCC 10881 = NCIMB 9311 = DSM 20196 = NCDO 1586 (T) BASE COUNT 59 a 56 c 65 g 49 t 4147 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .....CU-C- U-AGU-GA-G A-CU-G-NCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- AA-GCC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.oenos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc oenos. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc oenos. ORGANISM Leuconostoc oenos. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31673|g497820 NCDO 1674 = DSM 20252 (T) = NRRL B-3472 = ATCC 23279 biol_source= from wine BASE COUNT 57 a 52 c 56 g 42 t 4169 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-C-G-C- AA-ACC-G(G 2881 -CGA)CGGU- ---------- AA-GCUAA-U CUCUU-AAAA -CU-U-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGC-NG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.oenos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc oenos. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc oenos. ORGANISM Leuconostoc oenos. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE case of a rapidly evolving organism Phylogenetic structure of the "leuconostocs": An interesting JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M35820 ATCC 23279 = DSM 20252 (T) = NRRL B-3472 = NCDO 1674 biol_source= from wine BASE COUNT 387 a 316 c 431 g 351 t 2891 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGU-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GUAC 121 G--UA----G -----CCGCU GAAUUG---- ---------- ---------- ---------- 181 ---------- ---------- ------A-UC (--UU----- ---------- ---------- 241 --------CG -)GG-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- -GAAGUGAGG CAAUGA---- --C|-UA--G AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUNAG- AAA--CCU-G C-CCUU---U -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 GU-AAC---- ---------- -------A-A CA-A--A-U- ---CAC-(-- --------AC 541 NU-------- -)-GUG---- AU-CU----G UU-UGAAA-- ---GGUCC-- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --GGAU--C- G--CUA---- 661 ----GAGG-- AUG---G-|U CUUGC----- -GG|----CG U--AUUA-G- CUU-G---UU 721 GG-UA-GG-( GU-AGA-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GG-C-- UGG-C|C-NC -AUUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -NAA-C-UCC -(UACG)--G GAG-NC-UG- C-A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GC-AC-(GAA A)-GUG-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCAC| UGUU-GU-AA 1021 --GG-GAA-- GA-AUAA-CU --GAA-UUC( A----GAGAA -----A---) GUUU-UC-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------G 1141 -GAUGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-UC-C CG-AGG-C(- CC-A)A-CCU -CG-G-UAC- 1321 -UGCA-UUGG A-AAC-UGAU U-UACUU-GA GUG-----CG A-UA-GAGGC AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 AUC--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -UU-GU-UAA -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CCUAG-UGA 1741 CG--UA---- --GC-(AAA- ---C)G-CA- UUAA-GCACC C|N|G-CCU- G-AGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUU -AAA-GGAAU UG-ACGGG-G -N-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGAUA-C G)--CNNAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---CAAUG-- AUC----GCU 1981 -UUU-G--(- UAA--)-UGA -A-AGCUU-- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-G |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-C-G-C- AA-ACC-G(G 2881 -CGA)CGGU- ---------- AA-GCUAA-U CUCUU-AAAA -CU-U-CUC- UCAGUUCGGA 2941 C-UGGAGUC- (UGCAAC-U- C)-GACUCCA -CGAAGG-CG -GAAU-CGC- -UAGUN-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUNC-GUU- CCC-NGG-NC UUGUA----C 3061 ACNCCGCNN- GUC-AAA--- --UCN-UGGG A--GU-CGG- AA-GU-ACCC -AAA-G-UCG 3121 C-UUG-G-CU -AA-CU---- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -NGAGG-C-C G-GU-GC-CU A-AGGU-AAA AUC-GA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.fallax 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc fallax. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc fallax. ORGANISM Leuconostoc fallax. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE A phylogenetic analysis of a typical leuconostoc: description of Leuconostoc fallax sp. nov. JOURNAL FEMS Microbiol. Lett. 82, 55-60 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S63851 NB: method:RT sequence of rRNA data hand entered by CRW BASE COUNT 380 a 317 c 433 g 326 t 2920 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~....AAAUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UNGC-GGC-G -UGC-CU--A ACAC-AUGCN A-GUC-GAAG 121 C--UA----G UC---GCGGA CCUGA----- ---------- ---------- ---------- 181 ---------- ---------- -----UC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --GACGUAAA GCAUAU---- GGC|-UA--G AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- CAA--CCU-G C-CUCU---A -AGCA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UNAUACC-GU 481 AU-AAC---- ---------- -------A-A CG-C--A-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GU-GU----N UU-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCCU--N- A--CUU---- 661 ----AGAG-- AUG---G-|A UCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----UA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UNA AGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCAC| UGUU-GU-AU 1021 --GG-GAA-- GA-AUAG-UU --AAU-GUA( G----GAAA- -----U---) GAUG-UU-AA 1081 ---------- -------U-G U-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UC- 1261 G-UU-AAG|U CUN---AAGU G-AAA-GC-C CA-CAG-C(- UC-A)A-CUG -UG-G-AAU- 1321 -GGCU-UUGG A-AAC-UGGC G-AACUU-GA GUG-----CA G-UN-GAGGC NAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUN-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--A 1621 AAC-N-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -NUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNNG--- -AA----GAU 1981 -GUN-A--(- GAGA-)-UNA -U-NUNGU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UG--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C NUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-G-UA -UA--CNACG AGU-U-G-G- CA-ACC-G(G 2881 -CGA)CGGU- ---------- NA-GCUNA-U CUCUU-AAAG -UA-C-GUC- UCNGUUCGGA 2941 U-UGUAGUC- (UGCNAC-U- C)-GACUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UC UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-CU -NA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.fructosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus fructosus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus fructosus. ORGANISM Lactobacillus fructosus. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61140 Former RDP Sids: L.fruc2345 NCDO 2345 (T) = NRRL B-2041 = DSM 20349 = IFO 3516 = ATCC 13162 BASE COUNT 349 a 284 c 388 g 283 t 3072 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAA- UAA--CCU-A C-CUNA---A -AGUC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-A--C UNAUNCC-GG 481 AU-NAA---- ---------- -------A-C CC-A--A-G- ---UGC-(-- --------AC 541 AU-------- -)-GCA---- CU-AA----G GU-UAAAA-- ---GCUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAG--C- G--CUN---- 661 ----UAAG-- AUG---G-|A UUCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-G-C-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AAA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-A 901 GGG-AAUCUU C-CACNAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCNC| UGUU-GU-AU 1021 --GG-GAA-- GA-ACGG-GU --UUA-AGA( G----GAAA- -----U---) GCUU-AA-AC 1081 ---------- -------A-G U-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UG- 1261 C-UU-AAG|U CUG---AAGU G-AAA-GC-C CA-CAG-C(- UN-A)A-CUG -UG-G-AAU- 1321 -GGCU-UUGG A-AAC-UGGG C-AACUU-GA GUG-----CA G-UN-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-UUG AG-G------ -------CU- C-GNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UN-CU-- -------N|G -UU-GU-UAG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUUAG-UGA 1741 CG--AA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUC C|N|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----GGU 1981 -ACU-A--(- GAGA-)-UAG -U-GCUG--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----AG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UG--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CN-GGG-A CG-ACG--UC -A-GGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CN-C GUG--CUACN AUGGC-G-UA -UA--CNACG AGC-A-G-C- AA-ACC-U(G 2881 -UGA)AGGU- ---------- AA-GCGAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.cremori 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc mesenteroides subsp. cremoris ATCC 19254. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc mesenteroides subsp. cremoris ATCC 19254. ORGANISM Leuconostoc mesenteroides. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE interesting case of a rapidly evolving organism Phylogenetic structure of the "leuconostocs": An JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23034 ATCC 19254 = DSM 20346 BASE COUNT 399 a 321 c 437 g 325 t 2894 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----U -----AGC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- --G|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- CAA--CCU-G C-CUCN---A -GGCU-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------A-C UU-A--G-U- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- AC-AA----A GU-UAAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- A--CCU---- 661 ----AGAG-- AUG---G-|A UCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCAC| UGUU-GU-AU 1021 --GG-GAA-- GA-ACAG-CU --AGA-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGU U-AACUU-GA GUG-----CA G-UA-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUUAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----GCU 1981 -UUU-A--(- GAGA-)-UAG -A-AGUGU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUNA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CN-GU-CU A-AGGN-AGG ANA-GA-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.mesente 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293. ORGANISM Leuconostoc mesenteroides. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE interesting case of a rapidly evolving organism Phylogenetic structure of the "leuconostocs": An JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23035 ATCC 8293 = DSM 20343 BASE COUNT 406 a 338 c 447 g 334 t 2851 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UCAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAG 121 C--CA----C -----AGC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- --G|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- CAA--CCU-G C-CUCA---A -GGCU-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------A-C UU-A--G-U- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- AC-AA----A GU-UAAAA-- ---GGCGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GCGU--C- A--CCU---- 661 ----AGAG-- AUG---G-|A UCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCAC| UGUU-GU-AU 1021 --GG-GAA-- GA-ACAG-CU --AGA-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAU |-GUCC-C-- 1201 GAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-NAU- 1321 -GGCA-UUGG A-AAC-UGGU U-AACUU-GA GUG-----CA G-UA-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUN-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-UUG AG-G------ -------CU- C-GNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUUAG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUGUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----GCU 1981 -UUU-A--(- GAGA-)-UAG -A-AGUGU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGC-AGG ACA-GA-UG- ACC-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.lactis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc lactis. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc lactis. ORGANISM Leuconostoc lactis. REFERENCE 1 AUTHORS Yang,D. and Woese,C.R. TITLE case of a rapidly evolving organism Phylogenetic structure of the "leuconostocs": An interesting JOURNAL Syst. Appl. Microbiol. 12, 145-149 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23031 ATCC 19256 = DSM 20202 BASE COUNT 396 a 320 c 435 g 316 t 2909 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAG 121 C--CG----C -----AGC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAAAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCNUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- --G|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-G C-CUCA---A -GGCU-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GA 481 AU-AAA---- ---------- -------A-C UU-A--G-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AC-AA----A GU-UCAAA-- ---GGCGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCGN--C- A--CCU---- 661 ----AGAG-- AUG---G-|G NCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGGA|-GCAA CGCC-NN-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-AG --)GG-UCGU AAA--GCAC| NGUU-GU-AU 1021 --GG-GAA-- GA-AAUG-CU --AGA-AUA( G----GGAA- -----U---) GAUU-CU-AG 1081 ---------- -------U-U C-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A AAUAC-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-GUAU |-GUCC-N-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UG- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GC-C NG-GAG-C(- UC-A)A-CUC -CG-G-NAU- 1321 -GGCA-UUGG A-AAC-UGGU U-AACUU-GA GUG-----UU G-UA-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--AC-AA CUGACG-UUG AG-G------ -------CU- C-NNAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUUAG-UGC 1741 CN--AA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----GCU 1981 -UCU-A--(- GAGA-)-UAG -A-AGUGU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-NC UUGUA----C 3061 ACACCGNNN- NUC-ACN--- --CCA-UGGG A--GU-UUG- UA-AU-GCCC -NAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CU A-AGGC-AGG ACA-GA-UG- ACU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.citreu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc citreum. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc citreum. ORGANISM Leuconostoc citreum. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. TITLE An automated RNA extraction procedure and application for 16S rRNA sequencing of Leuconostoc amelobiosum. JOURNAL Microbiologia 7, 106-112 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: S78390 Former RDP Sids: Lc.amelobi NCDO 2787 = NRRL B-742 = ATCC 13146 = DSM 20188 = NCFB 2787 NB: former name Leuconostoc amelobiosum BASE COUNT 387 a 324 c 436 g 327 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAA- 121 C--CG----C -----AGC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCUUU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----NA---- --G|-CG--A GAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGA- UAA--CCU-G C-CUCA---A -GGCU-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UNAUACC-GA 481 AU-NAA---- ---------- -------A-C UU-A--G-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AC-UA----A GU-UNAAA-- ---GGCGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCGU--C- U--CCU---- 661 ----AGAG-- AUG---G-|A UCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--GCAC| UGUU-GU-AU 1021 --GG-GAA-- GA-AAUG-CU --AAA-AUA( G----GGAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-AC -G|-GU-UG- 1261 A-UU-AAG|U CUN---AUGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAU- 1321 -GGCA-UUGG A-AAC-UGGU U-AACUU-GA GUG-----UU G-UA-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--AC-AA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUUAG-UGC 1741 CG--AA.... ...C-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----GCU 1981 -UUU-A--(- GAGA-)-UAG -A-AGUGU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-UA -UA--CAACG AGU-U-G-C- CA-ACC-U(G 2881 -CGA)AGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACGGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CU A-AGGC-AGG ACA-GA-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lc.citreu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Leuconostoc citreum. ACCESSION No information KEYWORDS No information. SOURCE Leuconostoc citreum. ORGANISM Leuconostoc citreum. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. TITLE An automated RNA extraction procedure and application for 16S rRNA sequencing of Leuconostoc amelobiosum. JOURNAL Microbiologia 7, 106-112 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53963 Former RDP Sids: Lc.amelob2 NCFB 2787 = NRRL B-742 = ATCC 13146 = DSM 20188 = NCDO 2787 NB: former name Leuconostoc amelobiosum BASE COUNT 350 a 316 c 423 g 317 t 2970 others ORIGIN 1 .......... .......... .......... ....AAAUUG AGAGUU(U-N A)U-CCU|-N 61 GCUCAG-GAU -NAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAA- 121 C--CG----C -----AGC-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-UN (--CU----- ---------- ---------- 241 --------UG -)CA-CCNNU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----NA---- --G|-CG--A GAUG-GCGA- 361 -A-CG-GG-U GAGU---NAN -NC-GUGGA- UNA--CCU-G C-CUNN---A -GGCU-G-GG 421 -GAU-NA-CN U--------- ------UU-- G(-GAAA-)C -NGAU-G--C UNAUACC-GA 481 AU-NAA---- ---------- -------A-C UU-A--G-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AU-CN----A GU-NNAAA-- ---GGCGC-- ---------- 601 --(------- ---UNCG--- ---)------ ---------| --GCGU--G- U--CCU---- 661 ----AGAG-- AUG---G-|A UCCGC----- -GG|----UG C--NUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-NAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-GCC -(UACG)--G GAG-GC-UG- C-N---GU-N 901 GGG-AAUCUU C-CACNAU-- GG-GC-(GCA A)-GCC-UNA UGGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CU(--UU-CG --)GG-UCGU NAA--GCAC| UNUU-GU-NU 1021 --GG-GAA-- GA-AAUG-CU --NAA-AUA( G----GGAA- -----U---) NNUU-UU-NG 1081 ---------- -------U-U U-GA-CGGU- N-CCA-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N AAUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAU |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-AC -G|-GU-UG- 1261 A-UU-NAG|U CUN---AUGU G-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-NAU- 1321 -GGCA-UUGG A-AAC-UGGU N-AACUN-GA GUG-----UU G-UA-GAGGU AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--AC-NA CUGACG-UUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UAG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUUAG-UGC 1741 CG--AA.... ...C-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CN-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNNN-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---UUUG--- -AA----GCU 1981 -NUU-A--(- GAGA-)-UAG -A-AGUNU-- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAA-AG-UGA |---C|N--G 2161 GU-GG-UGCA UN|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGC-G-UA -UA--CNACG AGU-U-G-C- CA-ACC-U(G 2881 -CGA)AGGU- ---------- GA-GCUAA-U CUCUU-AAAG -UA-C-GUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- N)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACGGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -NNNU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CU A-AGGC-AG. .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.2 L.DELBRUECKII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.2 L.DELBRUECKII_SUBGROUP. ORGANISM 2.16.8.15.2 L.DELBRUECKII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.amyphilu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus amylophilus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus amylophilus. ORGANISM Lactobacillus amylophilus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58806 BASE COUNT 417 a 317 c 439 g 322 t 2881 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UGGUU AAGAGURGC- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- AAAGCRAUUA ACAAUG---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCN-N C-CCNA---U -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CA-A--C-U- ---AUC-(-- --------AC 541 AU-------- -)-GAU---- AG-AU----G UU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GAAA--- ---)------ ---------| -GCUAU--C- A--CUA---- 661 ----AAGG-- AUG---G-|A CUNGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GAGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-AU-UG 1021 --GA-GAA-- GA-AGGA-UA --AGG-UAA( G----UAAC- -----U---) GUAC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-ACC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGA- GUG-CAG-GC -G|-GU-UG- 1261 U-AU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-NAU- 1321 -UGCA-UCAG N-AAC-UGUA U-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---AGCG--- -CC----AAU 1981 -CCC-A--(- GAGA-)-UGG -G-ANGU--- UU-------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CNUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAACG AGU-U-G-C- GA-ACU-U(G 2881 -UGA)AAGU- ---------- AA-GCGAA-U CUCUA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-NGG-CC NUGUA----C 3061 ACACCGCCC- NUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCA--- ---------- ---------- -----(---- -UUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.gasseri1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus gasseri. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus gasseri. ORGANISM Lactobacillus gasseri. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61137 NCDO 2233 = NCIMB 11718 = ATCC 33325 = DSM 20243 (T) = ATCC 33323 BASE COUNT 336 a 288 c 382 g 276 t 3094 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCNA---G -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-C--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UN-GA----G UN-UAAAA-- ---GAUNGU- ---------- 601 --(------- ----NCU--- ---)------ ---------| -GCUNU--N- A--CUN---- 661 ----UUGG-- AUN---G-|A CCUNC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--NU-CG --)GC-UCGU NAA--GCUN| UGUU-GG-UA 1021 --GU-GAA-- GA-AAGA-UA --GAG-GUA( G----UAAC- -----U---) NGCC-UN-NN 1081 ---------- -------U-U U-GA-CGGU- A-AUU-A-CU U-AG--AAAG ---------U 1141 -NACGGCU-N ACUAC-GUG( CCA--GCAGC NGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GUG-CAG-GC -G|-GU-UC- 1261 A-AU-NAG|U CUG---AUGU G-AAN-NN-G UU-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCA-UCAG A-AAC-UGUU G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UN--CA---- --NC-(UAA- ---C)G-CA- UUNA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-GGU -UUNAUU-CG -(AAGNAN-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AGUG--- -CA----AAC 1981 -CUN-A--(- GAGA-)-UUA -G-GUNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-UN-AGA |---C|A--G 2161 GU-GG-NGCA UN|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UN--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-A-UC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGA-A-G-C- GA-ACC-U(G 2881 -CGA)AGGC- ---------- AA-GCGGA-U CUCUG-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- N)-GCCUNCA -CGAAGC-UN -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-CUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UUG-G-GA UAA-CC---- ---------- ---------- -----(---- -U.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.gasseri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus gasseri. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus gasseri. ORGANISM Lactobacillus gasseri. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58820 ATCC 33323 = NCIMB 11718 = ATCC 33325 = DSM 20243 (T) = NCDO 2233 BASE COUNT 405 a 334 c 451 g 321 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C UU---GCCUA GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- -AUUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCAGA U--------- ---------- ---------- ---------- 301 ---------- ---------- ----GAAACU AGAUAC---- AAG|-CN--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAA---G -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-C--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UA-GA----G UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUC---- 661 ----UUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GG-UA 1021 --GU-GAA-- GA-AAGA-UA --GAG-GUA( G----UAAC- -----U---) GGCC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUU-A-CU U-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GUG-CAG-GC -G|-GU-UC- 1261 A-AU-AAG|U CUG---AUGU G-AAA-GN-C UU-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCA-UCAG A-AAC-UGUU G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AGUG--- -CA----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNNU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGA-A-G-C- GA-ACC-U(G 2881 -CGA)AGGC- ---------- AA-GCGGA-U CUCUG-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.acidoph2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB 82. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus acidophilus subsp. johnsonii str. BMF 6Lb6 LAB 82. ORGANISM Lactobacillus acidophilus. REFERENCE 1 AUTHORS Pot,B., Hertel,C., Ludwig,W., Descheemaeker,P., Kersters,K. and Scleifer,K.H. TITLE Identification and classification of Lactobacillus acidophilus, L. gasseri and L. johnsonii strains by SDS-PAGE and rRNA-targeted oligonucleotide probe hybridization JOURNAL J. Gen. Microbiol. 139, 513-517 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M99704 isolate_name= BMF 6Lb6 BASE COUNT 417 a 347 c 465 g 337 t 2810 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C UU---GCCUA GAUGAU---- ---------- ---------- ---------- 181 ---------- ---------- --UUUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAAACU AGAUAC---- AAG|-CG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAA---G -AGAC-U-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-C--U-A- ---GAC-(-- --------GC 541 AU-------- -)-GUC---- UA-GA----G UU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUC---- 661 ----UUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GG-UA 1021 --GU-GAA-- GA-AAGA-UA --GAG-GUA( G----UAAC- -----U---) GGCC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUU-A-CU U-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GUG-CAG-GC -G|-GU-UC- 1261 A-AU-AAG|U CUG---AUGU G-AAA-CG-C UU-CGG-C(- UC-A)A-CCG -GA-G-AAU- 1321 -UGCA-UCAG A-AAC-UGUU G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AGUG--- -CA----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GUGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGA-A-G-C- GA-ACC-U(G 2881 -CGA)AGGC- ---------- AA-GCGGA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUA|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.acetoler 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus acetotolerans. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus acetotolerans. ORGANISM Lactobacillus acetotolerans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58801 BASE COUNT 401 a 331 c 447 g 322 t 2875 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUAACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C CG---AACUA AUUG------ ---------- ---------- ---------- 181 ---------- ---------- ----AUU-AC (--UU----- ---------- ---------- 241 --------CG -)GG-UAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------GAAG UNAGGG---- ARG|-CN--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCUA---U -AGUC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAA---- ---------- -------A-G GA-G--A-G- ---AUC-(-- --------AC 541 AU-------- -)-GAU---- UU-CU----U UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----AAGG-- AUG---G-|A CCCNC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AAGA-UA --GUG-AGA( G----UAAC- -----U---) GCUC-AU-UA 1081 ---------- -------U-U U-GC-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-AA- 1261 G-AU-AAG|U CAG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-CAU- 1321 -AGCA-UCGG A-AAC-UGUC U-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UC-AAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---AGUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAACG AGG-A-G-C- GA-ACU-U(G 2881 -UGA)AGGC- ---------- AA-GCGAA-U CUCUG-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NC UUGUA----C 3061 ACACCGCCC- NUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-CCG-G-AU -AA-CCUAG- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------CU AGGAGU-C-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.delbruck 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus delbrueckii subsp. delbrueckii str. Calvert ATCC 9649. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus delbrueckii subsp. delbrueckii str. Calvert ATCC 9649. ORGANISM Lactobacillus delbrueckii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE rRNA Phylogenetic analysis of the lactobacilli based upon 16S JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 9649 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58814 ATCC 9649 = NCIMB 8130 = NCDO 213 = DSM 20074 (T) isolate_name= Calvert BASE COUNT 387 a 341 c 461 g 310 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUCAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C -----UGAAU U--------- ---------- ---------- ---------- 181 ---------- ---------C AAAGAUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGAU UUG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UUGGAU---- --G|-CU--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUA---A -AGAC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-U--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-AA----G UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GYAA--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GCA( G----UAAC- -----U---) GGUC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-AU- 1261 G-AU-AAG|U CUG---AUGU G-AAA-GC-C NA-CGG-C(- UY-A)A-CCG -UG-G-AAC- 1321 -UGCA-UCGG A-AAC-UGUC A-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--CG-CU-- -------A|G -GU-GU-UGG -GG-ACU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------GUC -CUCAG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCNNU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -CU----ACA 1981 -CCU-A--(- GAGA-)-UAG -G-UNGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAACG AGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCGGA-U CUCUU-AAAG -CU-G-YUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-CUG- CA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CC-GC-CU A-AGGC-AGG GCA-GA-UG- ACN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.delbruc2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus delbrueckii subsp. delbrueckii str. Calvert NCDO 213. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus delbrueckii subsp. delbrueckii str. Calvert NCDO 213. ORGANISM Lactobacillus delbrueckii. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide Sequence of 16S Ribosomal RNA from Lactobacillus Delbrueckii and Lactobacillus Plantarum. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: NCDO 213 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52654 NCDO 213 = NCIMB 8130 = DSM 20074 (T) = ATCC 9649 isolate_name= Calvert BASE COUNT 372 a 345 c 453 g 303 t 2903 others ORIGIN 1 .......... .......... .......... ...CAAAUUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C -----UGAAU U--------- ---------- ---------- ---------- 181 ---------- ---------C AAAGGAC-UC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGAU UUG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ -UCG-G-GG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- CAA--UCU-G C-CCUA---A -AGAC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-U--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-AA----G UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUCCC-N A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GCA( G----UAAC- -----U---) AGUC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GA-AU- 1261 G-AU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCA-UCGG A-AAC-UGUC A-UNCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--CG-CU-- -------A|G -GU-GU-UGG -GG-ACU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GUC -CUCAG-UGC 1741 CG--CA---- --GC-(NAA- ---C)G-CA- UUAA-GC-CU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACN-UC|--- ---------C ---UGCG--- -CU----ACA 1981 -CCU-A--(- GAGA-)-UAG -G-UNGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AG-AGA |---C|N--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CNACG AGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- NA-GCGGA-U CUCUU-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-CUG- CA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CC--C-CU A-AGGC-AGG GCA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.lactis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus delbrueckii subsp. lactis ATCC 12315. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus delbrueckii subsp. lactis ATCC 12315. ORGANISM Lactobacillus delbrueckii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE rRNA Phylogenetic analysis of the lactobacilli based upon 16S JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58823 ATCC 12315 = DSM 20072 (T) BASE COUNT 394 a 357 c 469 g 316 t 2840 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNCAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C -----UGAAU U--------- ---------- ---------- ---------- 181 ---------- ---------C AAAGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGGAU UUG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- UUGGAN---- --N|-NN--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- CAA--UCU-G C-CCUA---A -AGAC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAC---- ---------- -------A-A CA-U--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-AA----G UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UAGG-- AUG---A-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GCA( G----UAAC- -----U---) GGUC-UU-UA 1081 ---------- -------U-U U-GA-CRGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-AU- 1261 G-AU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -UGCA-UCGG A-AAC-UGUC A-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--CG-CU-- -------A|G -GU-GU-UGG -GG-ACU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GUC -CUCAG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCGCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -CU----ACA 1981 -CCU-A--(- GAGA-)-UAG -G-CCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAACG UGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCGGA-U CUCUU-AAAG -CU-G-CUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-CUG- CA-AU-GCCC -AAA-G-UCG 3121 G-UGG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-A G-CC-GC-CU A-AGGC-AGG GCA-GA-UG- ACU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.helvetic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus helveticus str. Lh12 NCDO 2712 (T). ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus helveticus str. Lh12 NCDO 2712 (T). ORGANISM Lactobacillus helveticus. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCDO 2712 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61141 NCDO 2712 (T) = DSM 20075 = ATCC 15009 isolate_name= Lh12 BASE COUNT 322 a 291 c 380 g 275 t 3108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- GAA--CCU-N C-CCCA---U -NGCC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-N--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-A AG-C--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CA-GC----U NA-UAAAA-- ---GGCGGC- ---------- 601 --(------- ---GUNA--- ---)------ ---------| -N-UNU--C- G--CUA---- 661 ----UGGN-- AUG---G-|C CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UNA UGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UN --GAG-GUA( G----UNAC- -----U---) GGCC-UN-UN 1081 ---------- -------U-U U-GA-CGGU- N-AUC-A-AC C-AG--AAAG ---------U 1141 -NNCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GA-AG- 1261 A-AU-AAG|U CUN---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-N-NAC- 1321 -UGCA-UCGG A-AAC-UGUU U-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUN AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAU- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UN--CA---- --NC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UNG ACA-UC|--- ---------U ---NGUG--- -CC----AUC 1981 -CUA-A--(- GAGA-)-UUA -G-GNGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-UN-AGA |---C|A--G 2161 GU-CG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-C-AG -UA--CNACG AGA-A-G-C- GA-GCC-U(G 2881 -CGA)AGGC- ---------- NA-GCGAA-U CUCUG-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- N)-GACUGCA -CGAAGC-UN -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACNNCNC- GUC-NCA--- --CNA-UNGA A--GU-CUG- CA-AU-GCCC --AA...... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.amyvorus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus amylovorus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus amylovorus. ORGANISM Lactobacillus amylovorus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58805 ATCC 33620 = DSM 20531 BASE COUNT 379 a 334 c 458 g 309 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNUANAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----- -----CGGAA CCAACAGAU- ---------- ---------- ---------- 181 ---------- ---------- -----UU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGACGU UGNAAA---- ---|-CN--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- GAA--CCU-G C-CCCN---A -AGUC-U-GG 421 -GAU-AC-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-A AG-C--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CA-GC----U UU-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUGU--C- G--CUN---- 661 ----AGGG-- AUG---G-|C CCNGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-NU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GUA( G----UAAC- -----U---) GGCC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CUCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-AA- 1261 A-AU-AAG|U CUN---AUGU G-AAA-GC-C CU-CGG-C(- UU-N)A-CCG -AG-N-NAC- 1321 -UGCA-UCGG A-AAC-UGUU U-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCUCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---AGUG--- -CN----AUC 1981 -UGU-A--(- GAGA-)-UAU -G-GAGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CGC-UA-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAACG AGA-A-G-C- AA-GCC-U(G 2881 -CGA)AGGC- ---------- NA-GCGAA-U CUCUG-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CUG- CA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -NA-CN---- ---------- ---------- -----(---- -NUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGC-AGG GCA-GA-UG- ACN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.acidophi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus acidophilus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus acidophilus. ORGANISM Lactobacillus acidophilus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58802 ATCC 4356 = NCDO 1748 = DSM 20079 (T) = NCIMB 8690 = IMET 10710 BASE COUNT 397 a 353 c 462 g 316 t 2848 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAAACG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--AG----C ------UGAA CCAACAGAU- ---------- ---------- ---------- 181 ---------- ---------- -----UC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --UGACGUUG GGNAAC---- --G|-CU--- AGCG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- GAA--CCU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-A AG-C--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CA-GC----U UA-UAAAA-- ---GGCGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUGU--C- G--CUA---- 661 ----UGGN-- NUG---G-|C CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GUA( G----UAAC- -----U---) GGCC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-AG- 1261 A-AU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAC- 1321 -UGCA-UCGG A-AAC-UGUU U-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-NNAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---AGUG--- -CA----AUC 1981 -CGU-A--(- GAGA-)-UAC -G-GNGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-U--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAACG AGG-A-G-C- AA-GCC-U(G 2881 -CGA)AGGC- ---------- AA-GCGAA-U CUCUU-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CUG- CA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGC-AGG GCA-GA-UG- AC........ 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.acidoph1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus acidophilus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus acidophilus. ORGANISM Lactobacillus acidophilus. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61138 NCDO 1748 = DSM 20079 (T) = ATCC 4356 = NCIMB 8690 = IMET 10710 BASE COUNT 341 a 307 c 410 g 283 t 3035 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- GAA--CCU-G C-CCCA---U -AGUC-U-GG 421 -GAU-AC-CA C--------- ------UU-- G(-GAAA-)C -AGGU-N--C UAAUACC-GG 481 AU-AAG---- ---------- -------A-A AG-C--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GNU---- CA-GC----U UA-UAAAA-- ---GGCGGC- ---------- 601 --(------- ---GUNA--- ---)------ ---------| -NNUNU--C- G--CUN---- 661 ----UGGN-- AUG---G-|C CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-UG 1021 --GU-GAA-- GA-AGGA-UA --GAG-GUA( G----UAAC- -----U---) GGCC-UU-UA 1081 ---------- -------U-U U-GA-CGGU- A-AUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GA-AG- 1261 A-AU-AAG|U CUN---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-N-NAC- 1321 -UGCA-UCGG A-AAC-UGUU U-UUCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UN- 1561 GC-GAA-CA- -GG(AUUN-G AUAC)-CCU- ----GGUN-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -GA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -CUCAG-UGC 1741 UG--CA---- --NC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---AGUG--- -CA----AUC 1981 -CGU-A--(- GAGA-)-UAC -G-GNGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CNACG AGG-A-G-C- AA-GCC-U(G 2881 -CGA)AGGC- ---------- AA-GCGAA-U CUCUU-AAAG -CU-G-UUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- N)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUN-ACA--- --CCA-UNGG A--GU-CUG- CA-AU-GCCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-C----- ---------- ---------- -----(---- -UCG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-ANNC-AGG GCA-GA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.3 L.REUTERI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.3 L.REUTERI_SUBGROUP. ORGANISM 2.16.8.15.3 L.REUTERI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.ferment1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus fermentum. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus fermentum. ORGANISM Lactobacillus fermentum. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61142 NCDO 1750 = ATCC 14931 = DSM 20052 (T) BASE COUNT 339 a 311 c 399 g 284 t 3043 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGU---AAC -NC-GUAGG- UNA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CG-U--U-G- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- CA-AC----G CU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCUC-- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----CUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUG-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-N A|-GGC-GA- UGA------- -----UG-CN 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----NA-U-- CGG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-C ACG)--GCCU -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAC-GU --AUG-AGA( G----UAAC- -----U---) GUUC-AU-AC 1081 ---------- -------G-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGA- GUG-CAG-GC -G|-GU-UU- 1261 U-CUNAAG|U CUG---AUGU G--NA-GA-N UN-CGG-C(- UN-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-AA-GAGGG UAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UNGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUN-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-A------ -------CU- C-GAAA-GC- NU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--GA---- --NC-(UAA- ---C)G-CA- UUAA-GCNCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CN-AG CGGUNG-AGC A-U-GU-NGU -NNAAUU-CG -(AAN-UA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UN-UUG ACA-UC|--- ---------U ---UGCG--- -CC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GNGU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UN|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUNCA AUGGA-C-GG -UA--CNACG AGU-C-G-C- GA-ACU-N(G 2881 -CGA)GGGC- ---------- NA-GCNAA-U CUCUN-NAAA -CC-G-UNC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCNAC-U- N)-GCCUNCA -CGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -NGC-NU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUN-NCA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-C-ACC 3121 G-AGU-C-GG -UG-GG---- ---------- ---------- -----(---- -GUAA--CC- 3181 ---------- ---------- ---------- -------)-- ---------- --UUU----- 3241 ---------U AGGANC-C-A G-CC-GC-CU A-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.fermentm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus fermentum. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus fermentum. ORGANISM Lactobacillus fermentum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58819 ATCC 14931 = DSM 20052 (T) = NCDO 1750 BASE COUNT 392 a 353 c 457 g 343 t 2831 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGU-G -UGC-CU--A AUAC-AUGCU A-GUC-GAAC 121 G--CG----U ------UGGC CCAAUUGAUU GAU------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUGAUUUUGG UCGCNU---- --A|-CN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-UAC---- ---------- -------A-A CU-U--U-G- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- CA-AC----G CU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCUC-- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----CUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----UA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAC-GU --AUG-AGA( G----UAAC- -----U---) GUUC-AU-AC 1081 ---------- -------G-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGA- GUG-CAG-GC -G|-GU-UU- 1261 U-CU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-AA-GAGGG UAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUACCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-A------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-NNGU--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CGC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCAAA-U CUCUU-AAAA -CC-G-UUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.pontis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus pontis str. LTH 2587. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus pontis str. LTH 2587. ORGANISM Lactobacillus pontis. REFERENCE 1 AUTHORS Vogel,R.F., Bocker,G., Stolz,P., Ehrmann,M., Fanta,D., Ludwig ,W., Pot,B., Kersters,K., Schleifer,K.H. and Hammes,W.P. TITLE Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 223-229 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76329|g534948 isolate_name= LTH 2587 BASE COUNT 396 a 363 c 476 g 332 t 2809 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- CGGC-GGU-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C UG---GCCCA ACUGAUAUGA C--------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUUGACGAUG GAUUAC---- CAG|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUG---G -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-A UC-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UG----A UU-UCAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUC---- 661 ----CAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --AA-GAA-- GA-ACGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-ACGCA 1081 ---------- -------G-- U-GA-CGGU- A-UUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 C-UU-AAG|U CUG---AUGU G-AAA-CG-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG U-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GAU-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CU----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGU-C-G-C- UA-ACC-C(G 2881 -CGA)GGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-AUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UUG- UA-AC-GCCC -AAA-G-UCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GC-CU A-AGGC-GGG ACA-GA-UG- A-CUGGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.reuteri2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus reuteri str. F275 JCM 1112. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus reuteri str. F275 JCM 1112. ORGANISM Lactobacillus reuteri. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: JCM 1112 Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31697|g497812 JCM 1112 = DSM 20016 = ATCC 23272 = NCIMB 11951 (T) isolate_name= F275 BASE COUNT 52 a 52 c 58 g 41 t 4173 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAU....... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.reuteri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus reuteri str. F275 DSM 20016. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus reuteri str. F275 DSM 20016. ORGANISM Lactobacillus reuteri. REFERENCE 1 AUTHORS Rodtong,S., Tannock,G.W. and Wilson,K.H. TITLE Nucleotide sequence of the 16S ribosomal RNA gene of Lactobacillus reuteri DSM 20016 JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20016 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L23507 DSM 20016 = ATCC 23272 = NCIMB 11951 (T) = JCM 1112 isolate_name= F275 BASE COUNT 391 a 348 c 461 g 335 t 2841 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- CGGC-AGU-G -UGC-CU--A AUAC-AUGCA A-GUC-GUAC 121 G--CA----C UG---GCCCA ACUAAUUGAU GG-------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CU------ ---------- ---------- ---------- ---------- 301 ---------- --------GA AUUGACGAUG GAUCAC---- CAG|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCCG---G -AGCG-G-GG 421 -AAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CA-A--A-A- ---GCC-(-- --------GC 541 AU-------- -)-GGU---- UU-UU----- CU-GGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUAU--C- A--CUC---- 661 ----UGGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUUAG- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACCCA A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGGGA-A 841 (CUGA-GA-C ACG)--GUCC -AUAAC-UUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-G-C-UGA UGGA|-GCAA CACC-GC-GU 961 U-A-UU-A-A G-AAA--G-G GU(--UU-CG --)GC-CGCU UAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGU-GC --GUU-AGA( G----UAAC- -----U---) GUUA-CG-CA 1081 ---------- -------G-- U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-GAA-A--C -U-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CU--GU---- --UC-(UAA- ---C)G-CA- UUAAUGCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGA-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CU----AAC 1981 -CUU-A--(- GAGA-)-UAA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AC---| GUU-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC CCU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- AA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AC-GCCC -AAA-GUUCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGACGGG-U A-CC----CU A-AGGC-GGG ACA-GA-UG- AUCUGGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.reuteri3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus reuteri str. F275 DSM 20016. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus reuteri str. F275 DSM 20016. ORGANISM Lactobacillus reuteri. REFERENCE 1 AUTHORS Vogel,R.F., Bocker,G., Stolz,P., Ehrmann,M., Fanta,D., Ludwig,W., Pot,B., Kersters,K., Schleifer,K.H. and Hammes,W .P. TITLE Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 223-229 (1994) STANDARD No information COMMENTS Organism information Culture collection: DSM 20016 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76328|g535087 DSM 20016 = ATCC 23272 = NCIMB 11951 (T) = JCM 1112 isolate_name= F275 BASE COUNT 388 a 360 c 485 g 333 t 2810 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- CGGC-GGU-G -UGC-CU--A AUAC-AUGCA A-GUC-GUAC 121 G--CA----C UG---GCCCA ACUGAUUGAU ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- --------UG AUUGACGAUG GAUCAC---- CAG|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCCG---G -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CA-A--A-A- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- UU-UU----G UU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUUG--- ---)------ ---------| -GCUAU--C- A--CUC---- 661 ----UGGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-NCGCA 1081 ---------- -------G-- U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CU----AAC 1981 -CUU-A--(- GAGA-)-UAA -G-GCGU--- UN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- AA-GCU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UUG- UA-AC-GCCC -AAA-G-UCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GC-CU A-AGGC-GGG ACA-GA-UG- A-CUGGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-G)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.vaginali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus vaginalis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus vaginalis. ORGANISM Lactobacillus vaginalis. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61136 NCTC 12197 = ATCC 49540 (T) BASE COUNT 336 a 339 c 439 g 297 t 2965 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- CGGC-GGU-G -UGC-CU--A AUAC-NUGCN A-GUC-GAGC 121 G--CA----C UG---GCCCA NCUGAUAUGA C--------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UNAA---- ---|------ UUGA-CGGG- 361 -A-CG-GG-U GAGU---NAN -NC-GUGGG- CAA--CCU-G C-CCUG---A -AGNG-G-GG 421 -GAU-AA-CA U--------- ------CU-- G(-GAAA-)C -AGGU-G--C UNAUACC-GC 481 NU-AAC---- ---------- -------N-A CG-A--A-A- ---ACC-(-- --------AC 541 NU-------- -)-NGU---- NN-NN----G NN-UCNAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- N--CUU---- 661 ----CNGG-- AUG---G-|G CCCGC----- -GG|----UG C--NUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UNACC-A A|-GGC-AA- UGA------- -----UG-CN 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -NAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACNAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CNCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GN-UG 1021 --GA-GAA-- GA-ACGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GC 1081 ---------- -------A-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------U 1141 -CNCGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUNN -UU-GGGC|G UNAA-GCGA- GCG-CNG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-AAN-NN-N UU-CGG-C(- UN-A)A-CCG -AA-G-AAG- 1321 -GGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UN-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUN AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-NAN-CA- -GG(AUUA-G AUAC)-CCU- ----GGUN-G UC----CAU- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CN)- ---------- ---------- -G-------- -------CCC -UNCAG-UGC 1741 CG--GA---- --NC-(UNA- ---C)G-CN- UUAA-GCNCU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -NAA-GGAAU UG-ACNGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -NNNAUU-CG -(AANNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UNG ACA-UC|--- ---------U ---NNGC--- -CU----AAC 1981 -CUN-A--(- GAGA-)-UUA -G-GCGU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-UGA |---C|N--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CNACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UUG- CA-AU-GCCC -AAA-G-UCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A A-CC-CC--U A-AGGC-AGG GCA-GA.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.panis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus panis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus panis. ORGANISM Lactobacillus panis. REFERENCE 1 AUTHORS Wiese,B.G., Strohmar,W., Rainey,F.A. and Diekmann,H. TITLE Lactobacillus panis sp. nov., from sourdough with a long fermentation period JOURNAL Int. J. Syst. Bacteriol. 46 (2), 449-453 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94230|g1313964 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 381 a 344 c 452 g 313 t 2886 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C UG---GCCCA ACUGAUAUGA C--------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUUGACGAUG GAUUAC---- CAG|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCUA---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-A CG-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UC----G UA-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UAGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --AA-GAA-- GA-ACGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AUGCA 1081 ---------- -------G-- U-GA-CGGU- A-UUC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CU----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- GU-GCAAA-U CUCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UUG- CA-AU-GCCC -AAA-G-UCA 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GC-CU A-AGGC-AGG ACA-GA-UG- A-CUGGGG-U 3301 G---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.oris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus oris. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus oris. ORGANISM Lactobacillus oris. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61131 NCDO 2160 (T) = NCIMB 8831 = ATCC 49062 BASE COUNT 326 a 310 c 394 g 274 t 3072 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGG-- CAA--CCU-G C-CCCN---A -NGC--G-GG 421 -GAU-AA-CN U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-U GG-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-NGU---- NN-UC----C AA-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUN---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UNACC-N A|-GGC-GA- UGA------- -----UG-CN 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGU-GC --GUA-AGA( G----UAAC- -----U---) GUUU-AC-GC 1081 ---------- -------A-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-NAN-AN-N UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UNGAA)-UGC -GU-NGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--AA---- --NC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUNC 1801 GAC-C---(G CAA)---G-G UU-NAAACUN -AAA-GGAAU UG-ANGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAN-UA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CC----AAC 1981 -CUC-A--(- GAGA-)-UGA -C-CNGU--- NU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-AGA |---C|A--G 2161 GU-NG-UGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-NA-G A-CU-G-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGC-C-GG -UA--CNACG AGC-N-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- NU-GCNAA-U CUCUU-NAAG -CC-G-GUC- UNAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- N)-GACUNCA -CGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGA A--GU-UUG- UA-AC-GCCC -AAA-G-UCG 3121 G-UGG-C-CN -NA-CC---- ---------- ---------- -----(---- NUUUN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.oris2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus oris. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus oris. ORGANISM Lactobacillus oris. REFERENCE 1 AUTHORS Wiese,B.G., Strohmar,W., Rainey,F.A. and Diekmann,H. TITLE Lactobacillus panis sp. nov., from sourdough with a long fermentation period JOURNAL Int. J. Syst. Bacteriol. 46 (2), 449-453 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X94229|g1313963 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 383 a 356 c 464 g 308 t 2865 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--CA----C UG---GCCCA ACAGAAAUGA C--------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUUGACGUUG GAUUCC---- CAG|-UG--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-G C-CCCN---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-U GG-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UC----C AA-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CACC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGU-GC --GUA-AGA( G----UAAC- -----U---) GUUU-ACGCA 1081 ---------- -------G-- U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UG- 1261 C-UU-AGG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG C-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--AA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UGCG--- -CC----AAC 1981 -CUC-A--(- GAGA-)-UGA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-GAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGC-A-G-C- UA-ACC-C(G 2881 -CGA)GGGU- ---------- GU-GCAAA-U CUCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGA A--GU-UUG- UA-AC-GCCC -AAA-G-UCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GC-CU A-AGGC-GGG ACA-GA-UG- A-CUGGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GAGG A(GGA-A)CC U......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.4 PED.PENTOSACEUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.4 PED.PENTOSACEUS_SUBGROUP. ORGANISM 2.16.8.15.4 PED.PENTOSACEUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ped.pentos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pediococcus pentosaceus. ACCESSION No information KEYWORDS No information. SOURCE Pediococcus pentosaceus. ORGANISM Pediococcus pentosaceus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58834 ATCC 33316 = DSM 20336 BASE COUNT 409 a 338 c 439 g 341 t 2849 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..UAAUAUG AGAGUU(U-G A)U-CUU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UU---CCGUU AAUUGAUUAU GAC------- ---------- ---------- 181 ---------- ---------- ------G-UA (--CU----- ---------- ---------- 241 --------UG -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA UUGAGAUUUU AACACG---- AAG|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGUA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-G AG-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NU-UC----U UU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----CUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AG- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACGU-GG --GUA-AGA( G----UAAC- -----U---) GUUU-AC-CC 1081 ---------- -------A-G U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUA---AUGU G-AAN-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-AGAAU UG-ACGGG-N -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AGU 1981 -CUA-A--(- GAGA-)-UUA -G-AGGU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-U-A G-CC-GU-CU A-A....... .......... .......... 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ped.acidil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Pediococcus acidilactici. ACCESSION No information KEYWORDS No information. SOURCE Pediococcus acidilactici. ORGANISM Pediococcus acidilactici. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58833 BASE COUNT 398 a 331 c 443 g 334 t 2870 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCUAAUAUG AGAGUU(U-G A)U-CUU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UU---CCGUU AAUUGAUCAG GAC------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- -------UGA AUGAGAUUUU AAYAYG---- AAG|-UN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGCA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-G AG-A--A-A- ---ACC-(-- --------GC 541 CU-------- -)-GGU---- UU-UC----U UU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----CUGG-- AUG---G-|A CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACGU-GG --GUG-AGA( G----UAAC- -----U---) GUUC-AC-CC 1081 ---------- -------A-G U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NNCNGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUA---AUGU G-AAA-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -NUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAAU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-U-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.5 L.PLANTARUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.5 L.PLANTARUM_SUBGROUP. ORGANISM 2.16.8.15.5 L.PLANTARUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.pentosus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus pentosus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus pentosus. ORGANISM Lactobacillus pentosus. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Katsumata,M., Igarashi,A. and Kobayashi,K. TITLE Comparative sequence analysis on the 16S rDNA of Lactobacillus plantarum and related strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D79211 NB: GB features incorrect, this is not complement BASE COUNT 404 a 331 c 449 g 335 t 2857 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UC---UGGUA UUGAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU ACAUUU---- GAG|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----G UU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---G-|U CCCGC----- -GG|----CG U--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAU-AU --CUG-AGA( G----UAAC- -----U---) GUUC-AG-GU 1081 ---------- -------A-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UAUG--- -CA----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GAG-A)AC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sp10776 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sp.. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sp. ORGANISM Lactobacillus sp. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Katsumata,M., Igarashi,A. and Kobayashi ,K. TITLE Comparative sequence analysis on the 16S rDNA of Lactobacillus plantarum and related strains JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D79213 NB: GB features incorrect, this is not complement BASE COUNT 407 a 331 c 447 g 333 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- USGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UC---UGGUA AUGAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAAUU ACAUUU---- GAG|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----G UU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---G-|U CCCGC----- -GG|----CG U--AUUA-G- CUA-G---AU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAU-AU --CUG-AGA( G----UAAC- -----U---) GUUC-AG-GU 1081 ---------- -------A-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UAUG--- -CA----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GAG-A)AC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.plantar3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus plantarum. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus plantarum. ORGANISM Lactobacillus plantarum. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kusumoto,K., Kawai,Y., Inoue,T. and Shinano,H. TITLE Comparative sequence analysis on the 16S rDNA of Lactobacillus casei subspecies JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D79210 NB: GB features incorrect, this is not complement BASE COUNT 404 a 332 c 448 g 334 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGSC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UC---UGGUA UUGAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU ACAUUU---- GAG|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----G CU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---G-|U CCCGC----- -GG|----CG U--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAU-AU --CUG-AGA( G----UAAC- -----U---) GUUC-AG-GU 1081 ---------- -------A-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UAUG--- -CA----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(GAG-A)AC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.plantarm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus plantarum str. 17-5 ATCC 8014. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus plantarum str. 17-5 ATCC 8014. ORGANISM Lactobacillus plantarum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 8014 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58827 ATCC 8014 = NCIMB 6376 = NCDO 82 = DSM 20205 isolate_name= 17-5 BASE COUNT 407 a 341 c 450 g 346 t 2832 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~AUUAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UC---UGGUA UUGAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU ACAUUU---- GAG|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----G CU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---G-|U CCCGC----- -GG|----CG U--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAU-AU --CUG-AGA( G----UAAC- -----U---) GUUC-AG-GU 1081 ---------- -------A-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UAUG--- -CA----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.plantar2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus plantarum str. Lp 39 NCDO 1752 (T). ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus plantarum str. Lp 39 NCDO 1752 (T). ORGANISM Lactobacillus plantarum. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide Sequence of 16S Ribosomal RNA from Lactobacillus Delbrueckii and Lactobacillus Plantarum. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: NCDO 1752 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52653 NCDO 1752 (T) = DSM 20174 = ATCC 14917 isolate_name= Lp 39 BASE COUNT 393 a 331 c 432 g 333 t 2887 others ORIGIN 1 .......... .......... .......... ..UUAAUUUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AN----C UC---UNGUA UUNAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU ACAUUU---- GAG|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--CCU-G C-CCAG---A -AGCG-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--G-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CC-GA----G CU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUN---- 661 ----UUGG-- AUG---G-|U CCCGC----- -GG|----CG U--AUUA-G- CUA-G---AU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A U|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UNA UGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAU-AU AUCUG-AGA( G----UAAC- -----U---) GUUC-AG-GU 1081 ---------- -------A-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUC-A) U-A-C-GUAG |-GUGG-C-- 1201 CAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UCAA-GCGA- GCG-CAG-GC -G|-GN-CN- 1261 U-UU-NAG|U CUG---AUGU G-AAA-NN-N UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AA-CUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UAUG--- -CA----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-ACU-C(G 2881 -CGA)GAGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CC-GC-CU A-AGGUCGGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.alimenta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus alimentarius. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus alimentarius. ORGANISM Lactobacillus alimentarius. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58804 ATCC 29643 = DSM 20249 BASE COUNT 407 a 321 c 432 g 344 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C UU---UCCUA UUNAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU AGAUCU---- AAG|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CA-U--U-A- ---AAC-(-- --------AC 541 AU-------- -)-NUU---- NU-UU----G UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUAU--C- U--CUU---- 661 ----CUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UG 1021 --AA-GAA-- GA-ACAU-AU --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GU 1081 ---------- -------A-C U-GA-CGGU- A-UUC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGA- AUG-UAG-GC -G|-GU-UC- 1261 A-UU-AAG|U UUG---AAGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAG- 1321 -UGCU-UCGA A-AAC-UGGU G-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUN-- ---------- ---------- ---------G 1501 NCU--GU-AA CUGACG-CUG AG-A------ -------UU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---CAUG--- -AA----AAG 1981 -CUA-A--(- GAGA-)-UUA -G-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG UGU-U-G-C- GA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCAAA-U CACUU-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAC-U-A G-CC-GC-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.farcimin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus farciminis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus farciminis. ORGANISM Lactobacillus farciminis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58817 ATCC 29644 = DSM 20184 (T) BASE COUNT 404 a 322 c 436 g 335 t 2879 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C CA---UCCUG AAGAU----- ---------- ---------- ---------- 181 ---------- ---------- ----UGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUC AGACCU---- UGG|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CNAA---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AAGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-A--C-U- ---UUC-(-- --------AC 541 AU-------- -)-GAU---- CG-UA----G CU-UGAAA-- ---GAUGGC- ---------- 601 --(------- ----UCU--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACN-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UG 1021 --AA-GAA-- GA-ACAU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GU 1081 ---------- -------A-C U-GA-CGGU- A-UUC-A-AC C-AG--AAAG ---------C 1141 -UACGGCU-A ACUAC-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GAGA- AUG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U UUG---AAGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-G-AAG- 1321 -UGCU-UCGA A-AAC-UGGU A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-A------ -------UU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---CAUG--- -AC----AAA 1981 -CUA-A--(- GAGA-)-UUA -G-UCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG UGU-U-G-C- GA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCAAA-U CACUU-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNN- NUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAAC-U-A G-CC-GC-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.brevis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus brevis. ORGANISM Lactobacillus brevis. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61134 NCDO 1749 = ATCC 14869 = DSM 20054 (T) BASE COUNT 365 a 324 c 430 g 312 t 2945 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UAAGAUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-NUGCA A-GUC-GAAC 121 G--AG----C UU---CCGUU GAAUG----- ---------- ---------- ---------- 181 ---------- ---------- ----ACG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUN-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----AUUUCA ACAAUG---- AAG|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -NC-GUGGG- AAA--UCU-G C-CCAG---A -AGCN-G-GG 421 -GAU-NA-CN C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UNAUACC-GU 481 NU-NAC---- ---------- -------A-A CA-A--A-A- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- UN-UU----G UU-UGAAA-- ---GGUNGN- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNU--C- N--CUU---- 661 ----CUGG-- AUG---A-|U CCCGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-CCACC-A A|-GAC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UNA UGGA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--NU-CG --)GC-UCGU NAA--ACUC| UGUN-GU-UA 1021 --AA-GAA-- GA-ACAC-CU --UUG-AGA( G----UAAC- -----U---) GUUC-AAGGG 1081 ---------- -------N-U N-GA-CGGU- N-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GN-NN- 1261 U-UU-AAG|U CUN---AUGU G-AAA-CC-G UN-CGG-C(- UN-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-GACUU-GA GUG-----CN G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUN AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAU- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UN--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAN-UA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------U ---NCUG--- -CC----AAU 1981 -CUU-A--(- GAGA-)-UNA -G-ACGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UN--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NGU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AGU-C(G 2881 -UGA)GGCU- ---------- NA-GCUAANU CUCUU-AAAG -CC-G-UNC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-UG -GAAU-CGC- -UAGUN-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UNG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-AU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUN-A..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.brevis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus brevis. ORGANISM Lactobacillus brevis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58810 ATCC 14869 = DSM 20054 (T) = NCDO 1749 BASE COUNT 406 a 340 c 450 g 344 t 2836 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AUAAGAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----C UU---CCGUU GAAUGAC--- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- --UGAUUUCA ACAAUG---- AAG|-CU--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- AAA--UCU-G C-CCAG---A -AGCA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CA-A--A-A- ---UCC-(-- --------GC 541 AU-------- -)-GGA---- UU-UU----G UU-UGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----CUGG-- AUG---A-|U CCCGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GAC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAC-CU --UUG-AGA( G----UAAC- -----U---) GUUC-AA-GG 1081 ---------- -------G-U U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCN(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUA-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUU-A--(- GAGA-)-UAA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AGU-C(G 2881 -UGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-AU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.brevis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus brevis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus brevis. ORGANISM Lactobacillus brevis. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31681|g497800 ATCC 14869 = DSM 20054 (T) = NCDO 1749 BASE COUNT 52 a 48 c 55 g 47 t 4174 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... ......A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AGU-C(G 2881 -UGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GU.. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.6 L.SANFRANCISCO_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.6 L.SANFRANCISCO_SUBGROUP. ORGANISM 2.16.8.15.6 L.SANFRANCISCO_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sanf5668 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sanfrancisco. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sanfrancisco. ORGANISM Lactobacillus sanfrancisco. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61132 BASE COUNT 360 a 319 c 428 g 339 t 2930 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GU-- UGGC-GGC-G -UGC-CU--A AUAC-NUGCN A-GUC-GAAC 121 G--AA----G UC---GCCNA AUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -UCUUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUNAG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUUUU GGAUCC---- GAC|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CA-A--G-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- NN-UN----N UU-UGAAA-- ---GCUGGC- -----C---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUNG--U- G--CUU---- 661 ----CUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-NG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CUG-C|C-AC -NAUGG-G-A 841 (CUGA-GA-N NCG)--GCCC -NUN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CNCNAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GNNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU NAA--ACUC| UGUU-GU-UN 1021 --GA-GAA-- GA-ANNG-CC --GUG-AGA( G----CNAC- -----U---) GCUC-AC-GG 1081 ---------- -------U-N U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CNCGGCU-N ACUAC-GUG( CCA--GCNGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAA-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GGGA- GCG-CNG-GC -G|-GU-UU- 1261 A-UU-NAG|U CUN---AUGU G-AAN-NN-N UN-CGG-C(- UN-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGAU N-AACUU-GA GUG-----CN G-AA-AAGGA UAG-U|GGAA 1381 CU-UCNUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUG-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAU- G-CC-GU--N 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCN -NUCAG-UGC 1741 CG--CA---- --NC-(UAA- ---C)G-CN- UUAA-GCUUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-NGU -UNNAUU-CG -(AUN-UA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACN-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UN-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGG-C-GA -UN--CNACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUNA-U CUCUU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-C G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sanfranc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sanfrancisco str. Kline L-2 ATCC 27651. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sanfrancisco str. Kline L-2 ATCC 27651. ORGANISM Lactobacillus sanfrancisco. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27651 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58830 ATCC 27651 = NRRL B-3934 = DSM 20451 isolate_name= Kline L-2 BASE COUNT 407 a 321 c 433 g 347 t 2868 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GU-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---GCCUA AUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -UCUUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAAG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUUUU GGAUCC---- GAC|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CA-A--G-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UC-UN----G UU-UGAAA-- ---GCUGGC- ----GC---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUAG--U- G--CUU---- 661 ----CUGG-- AUG---G-|A CCUNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-AG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CUG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-CC --GUG-AGA( G----CAAC- -----U---) GCUC-AC-GG 1081 ---------- -------U-A U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAA-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-GC-N UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGAU A-AACUU-GA GUG-----CA G-AA-AAGGA UAG-U|GGAA 1381 CU-UCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 N-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGNNC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-C G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sanfran2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sanfrancisco str. Kline L-2 ATCC 27651. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sanfrancisco str. Kline L-2 ATCC 27651. ORGANISM Lactobacillus sanfrancisco. REFERENCE 1 AUTHORS Vogel,R.F., Bocker,G., Stolz,P., Ehrmann,M., Fanta,D., Ludwig,W., Pot,B., Kersters,K., Schleifer,K.H. and Hammes,W .P. TITLE Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 223-229 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27651 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76327|g535106 ATCC 27651 = NRRL B-3934 = DSM 20451 isolate_name= Kline L-2 BASE COUNT 419 a 339 c 453 g 358 t 2807 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GU-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---GCCCA AUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -UCUUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAAG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUUUU GGAUCC---- GAC|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CA-A--G-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UC-UU----G UU-UGAAA-- ---GCUGGC- -----C---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUAG--U- G--CUU---- 661 ----CUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-AG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CUG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-CC --GUG-AGA( G----CAAC- -----U---) GCUC-AC-GG 1081 ---------- -------U-A U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAA-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|G CUG---AUGU G-AAA-CG-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGAU A-AACUU-GA GUG-----CA G-AA-AAGGA UAG-U|GGAA 1381 CU-UCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-C G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sanfran3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sanfrancisco. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sanfrancisco. ORGANISM Lactobacillus sanfrancisco. REFERENCE 1 AUTHORS Vogel,R.F., Bocker,G., Stolz,P., Ehrmann,M., Fanta,D., Ludwig,W., Pot,B., Kersters,K., Schleifer,K.H. and Hammes,W .P. TITLE Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 223-229 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76331|g534917 DSM 20663 = ATCC 43332 BASE COUNT 418 a 337 c 453 g 361 t 2807 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GU-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---GCCCA AUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -UCUUAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUAAG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGAUUUU GGAUCC---- GAC|-UG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CA-A--G-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UC-UU----G UU-UGAAA-- ---GCUGGC- -----C---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUAG--U- G--CUU---- 661 ----CUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-AG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CUG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-CC --GUG-AGA( G----CAAC- -----U---) GCUC-AC-GG 1081 ---------- -------U-A U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAA-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CUG---AUGU G-AAA-CG-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGAU A-AACUU-GA GUG-----CA G-AA-AAGGA UAG-U|GGAA 1381 CU-UCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AA-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCU -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-GUGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGCAGUC- (UGCAAC-U- C)-GACUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUG-G-AU -AA-CCU--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-C-C G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.fructivo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus fructivorans. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus fructivorans. ORGANISM Lactobacillus fructivorans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58818 ATCC 8288 = IFO 13954 (T) = DSM 20203 BASE COUNT 391 a 333 c 447 g 333 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----C UG---CGCCU AAUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -AGUUGA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUAGC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGACUUA AGUUAG---- CAG|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CG-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UC----G UU-UGAAA-- ---GAUGGC- -----C---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A UCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-GC --GUG-AGA( G----UAAY- -----U---) GCUC-AC-GU 1081 ---------- -------C-G C-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 U-CU-AAG|U CUG---AUGU G-AAA-GN-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUA-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -UU----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNGU--- NC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-U G-CC-GC-CN A-AGGU-GGG ANA-GA-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.fructiv2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus fructivorans. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus fructivorans. ORGANISM Lactobacillus fructivorans. REFERENCE 1 AUTHORS Vogel,R.F., Bocker,G., Stolz,P., Ehrmann,M., Fanta,D., Ludwig,W., Pot,B., Kersters,K., Schleifer,K.H. and Hammes,W .P. TITLE Identification of lactobacilli from sourdough and description of Lactobacillus pontis sp. nov. JOURNAL Int. J. Syst. Bacteriol. 44, 223-229 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76330|g535112 DSM 20203 = IFO 13954 (T) = ATCC 8288 BASE COUNT 410 a 348 c 463 g 346 t 2809 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----C UG---CGCCU AAUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -AGUUGA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUAGC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---UGACUUA AGUUAG---- CAG|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGA- UAA--CCU-G C-CCAG---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------CU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CG-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UC----G UU-UGAAA-- ---GAUGGC- -----C---- 601 --(------- ----UUU--- ---)------ -----GU--| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A UCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAA-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-GC --GUG-AGA( G----UAAC- -----U---) GCUC-AC-GU 1081 ---------- -------C-G C-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 U-CU-AAG|U CUG---AUGU G-AAA-CG-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUA-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAU 1981 -CUA-A--(- GAGA-)-UUA -G-ACGU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UUA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-U G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.homohioc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus homohiochii. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus homohiochii. ORGANISM Lactobacillus homohiochii. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31694|g497815 BASE COUNT 54 a 49 c 58 g 45 t 4170 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..).....G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-U-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-G... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.hilgard2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus hilgardii. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus hilgardii. ORGANISM Lactobacillus hilgardii. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31693|g497810 JCM 1155 (T) = NCIMB 8040 = NCDO 264 = DSM 20176 = ATCC 8290 BASE COUNT 61 a 54 c 62 g 48 t 4151 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......A-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGN-N-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.vermifor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sp. str. L 343 ATCC 13133. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sp. str. L 343 ATCC 13133. ORGANISM Lactobacillus sp. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the Lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13133 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59295 ATCC 13133 = NCFB 2777 = NRRL B-1127M isolate_name= L 343 BASE COUNT 389 a 325 c 448 g 334 t 2880 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAAGAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----U CU---UGGUC AAUG------ ---------- ---------- ---------- 181 ---------- ---------A AGUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUUAA CUN------- ---------- ---------- ---------- 301 ---------- ---------- -----AUUUG ACAUUA---- AGA|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CUU-G C-CCNG---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CA-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- NU-UU----G UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UGGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GN-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGG-GU --GUC-AGA( G----UAAC- -----U---) GUUG-AC-AU 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NNNGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CRUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AGG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCN(-G UNAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNNUCUN-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---UCUG--- -CU----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNAU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.hilgardi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus hilgardii. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus hilgardii. ORGANISM Lactobacillus hilgardii. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58821 ATCC 8290 = NCIMB 8040 = NCDO 264 = DSM 20176 = JCM 1155 (T) BASE COUNT 370 a 335 c 458 g 335 t 2878 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUCAGAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUNC-AUGCA A-GUC-GAAC 121 G--CG----U CU---UGGUC AAUG------ ---------- ---------- ---------- 181 ---------- ---------A AGUUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUUAA CUN------- ---------- ---------- ---------- 301 ---------- ---------- -----AUUUG ACAUUA---- AGA|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---NAC -NC-GUGGG- UAA--CUU-G C-CCCG---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-NAC---- ---------- -------A-A CA-A--A-A- ---ACC-(-- --------AC 541 NU-------- -)-GGU---- UU-UU----G UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UGGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CACNAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACGG-GU --GUC-AGA( G----UAAC- -----U---) GUUG-AC-AU 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AGG|U CUG---AUGU G-AAA-GC-C UN-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CU----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-N |-UU--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---NGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.buchner1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus buchneri. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus buchneri. ORGANISM Lactobacillus buchneri. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61139 NCDO 110 = ATCC 4005 = DSM 20057 (T) BASE COUNT 336 a 311 c 402 g 289 t 3038 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CU-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-G C-CUUG---A -AGUA-G-GG 421 -GAU-AA-CN C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UNAUACC-GU 481 AU-AAC---- ---------- -------A-A CC-A--A-A- ---ACC-(-- --------AC 541 CU-------- -)-NGU---- NN-UN----G NN-UAAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-C-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACAG-GU --NUC-AGA( G----UAAC- -----U---) GUUG-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUNGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CNG-GC -G|-GU-NN- 1261 U-UU-AGG|U CUN---AUGU G-NNN-NN-C UN-CGG-C(- UN-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG A-GACUU-GA GUG-----CN G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UN- 1561 GC-GAA-CA- -GG(AUUA-G AUNC)-CCU- ----GGUN-G UC----CAU- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--NA---- --NC-(UAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UNAAUU-CG -(AUN-UA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CNACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGA CAG-AU-GA. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.buchneri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus buchneri. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus buchneri. ORGANISM Lactobacillus buchneri. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58811 ATCC 4005 = DSM 20057 (T) = NCDO 110 BASE COUNT 384 a 329 c 439 g 332 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAGAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----U CU---CCGUU RAUGAY---- ---------- ---------- ---------- 181 ---------- ---------- -UUUARG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-YUUGA A--------- ---------- ---------- ---------- 301 ---------- ---------- ---AGAUUUA ACAUUG---- AGA|-CG--- AGUG-GCGA- 361 -A-CU-NG-U GAGU---AAC -AC-GUGGG- UNA--CCU-G CCCUUG---A -AGUA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UNAUACC-GU 481 AU-AAC---- ---------- -------A-A CC-A--A-A- ---ACC-(-- -------UAC 541 CU-------- -)-NGU---- UU-UN----N NU-UAAAA-- ---GACGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UAGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACAG-GU --GUC-AGA( G----YAAC- -----U---) GUUG-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AGG|U CUG---AUGU G-AAA-GC-N UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-CGGG A-GGCUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNNUCUN-- ---------- ---------- ---------G 1501 NCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AUNNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGNNN- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CN---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU....... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.kefir 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus kefir. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus kefir. ORGANISM Lactobacillus kefir. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS ATCC 35411 = JCM 5818 = NCIMB 12798 = DSM 20587 (T) BASE COUNT 393 a 331 c 442 g 333 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAAGAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----U UU---CCRUU AUUGAU---- ---------- ---------- ---------- 181 ---------- ---------- -UUUAGR-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUURA A--------- ---------- ---------- ---------- 301 ---------- ---------- ----UGAUUU AACACG---- AAA|-CG--- AGUG-GCGA- 361 -A-CU-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G CCCUUG---A -AGUA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------A-A CC-A--A-A- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- UU-UG----G NU-UAAAA-- ---GAUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G GU(--UU-CG --)GC-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACAG-GU --GUC-AGA( G----UAAC- -----U---) GUUG-AC-AU 1081 ---------- -------C-U U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGN NNNNGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AGG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -GA-G-AAG- 1321 -UGCA-UCGG A-AAC-CAGG A-GACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 NCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GN-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.kefir2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus kefir. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus kefir. ORGANISM Lactobacillus kefir. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31695|g497821 JCM 5818 = NCIMB 12798 = DSM 20587 (T) = ATCC 35411 BASE COUNT 58 a 54 c 62 g 48 t 4154 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... ...U-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-N- GA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGC-AU)-G CCA-CGGUG- AAUAC-GUU. .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.7 L.MALI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.7 L.MALI_SUBGROUP. ORGANISM 2.16.8.15.7 L.MALI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.mali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus mali. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus mali. ORGANISM Lactobacillus mali. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58824 ATCC 27053 = NCIMB 10560 (T) = DSM 20444 BASE COUNT 401 a 318 c 425 g 336 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----A AA---CUUUC AYC------- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CGRAAG---- UUU|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAG---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UA-A--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-UU----A UU-UAAAA-- ---GAUGGU- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUAU--C- N--CUU---- 661 ----CUGG-- AUG---G-|A CCNNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-NC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UAAC- -----U---) GCUC-AU-GC 1081 ---------- -------A-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-NC-C UU-CGG-C(- UU-A)A-CCG -AA-G-UCA- 1321 -UGCA-UUGG A-AAC-UGAA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CNCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCN -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GUNU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-AAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCNC- NUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGRAC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.animali1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus animalis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus animalis. ORGANISM Lactobacillus animalis. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61133 NCDO 2425 = ATCC 35046 = DSM 20602 (T) BASE COUNT 355 a 309 c 415 g 290 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)...CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACCG AUAAAG---- AGU|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- CAA--CCU-G C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 NU-AAC---- ---------- -------C-A UA-G--U-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- NA-CU----A UG-UAAAA-- ---GGNGG-- ---------- 601 --(------- ---CUAU--- ---)------ ---------| --CUAC--C- G--CUN---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GG|----CG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGNU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-N-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACCC| NGUU-GU-UN 1021 --GA-GAA-- GA-AAGU-GC --GUG-NGA( G----UAAC- -----U---) GUUC-AC-GN 1081 ---------- -------U-U C-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUNU CC-GGAUUUA -UU-GGGC|G UCAA-GGGA- ACG-CAG-GC -G|-GU-CU- 1261 N-UU-AAG|U CUN---AUGU G-AAN-NN-G UN-CGG-C(- UN-N)A-CCG -GA-G-UAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GN(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --NC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGNG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-C-GG -UA--CAACG AGU-C-G-C- NA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCAAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCNCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CN A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.animalis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus animalis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus animalis. ORGANISM Lactobacillus animalis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58807 ATCC 35046 = DSM 20602 (T) = NCDO 2425 BASE COUNT 388 a 329 c 434 g 321 t 2904 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUNAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----A CU---UCUUU AUCACC---- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACCG AUAAAG---- AGU|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CYAA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-A UA-G--U-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- AA-CU----A UG-UAAAA-- ---GGUGGC- ---------- 601 --(------- ----UAU--- ---)------ ---------| -GCUAC--C- N--CUU---- 661 ----UUGG-- AUG---G-|G CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AR- UGA------- -----UG-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-NAUCUU C-CNCAAU-- GG-GC-(GAA A)-GCC-UNA UGGA|-GCAA CGCC-NC-CU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACCC| NGUU-GU-UA 1021 --GA-GAA-- GA-AAGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GU 1081 ---------- -------U-U C-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-CC-N NN-CGG-C(- UU-A)A-CCG -GA-G-UAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CNAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UC-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- AA-GAY-C(G 2881 -CGA)GGUU- ---------- UA-GCAAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.murinus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus murinus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus murinus. ORGANISM Lactobacillus murinus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58826 ATCC 35020 = DSM 20452 (T) BASE COUNT 385 a 322 c 433 g 325 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----A CU---UCUUU AUCACC---- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACCG AUAAAG---- AGU|-UA--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUNA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-A UA-G--U-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- AA-CU----A UG-UAAAA-- ---GGUGGC- ---------- 601 --(------- ----UAU--- ---)------ ---------| -GCUAC--C- N--CUU---- 661 ----UUGG-- AUG---G-|G CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|N-NC -AUUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGGA|-GCAA CGCC-GC-NU 961 G-G-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACCN| NGUU-GU-UA 1021 --GA-GAA-- GA-AAGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GU 1081 ---------- -------U-U C-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GN-C UU-CGG-C(- UU-A)A-CCG -GA-G-UAG- 1321 -UGCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G U......... .......... ......GG-N -G-C-CN--N 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCNNC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCAAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.ruminis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus ruminis str. RF1 ATCC 27780. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus ruminis str. RF1 ATCC 27780. ORGANISM Lactobacillus ruminis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27780 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58828 ATCC 27780 = DSM 20403 (T) isolate_name= RF1 BASE COUNT 401 a 346 c 449 g 338 t 2842 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G CU---UUCUU UCACC----- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GAAAGA---- AGC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G C-CCAA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-A UG-A--A-C- ---ACC-(-- --------GC 541 AU-------- -)-GAU---- GU-UC----A UG-UAAAA-- ---GACGGC- ---------- 601 --(------- ---UUUU--- ---)------ ---------| -GCUGU--C- A--CUU---- 661 ----UUGG-- AUG---G-|C NNUGC----- -GG|----CG U--AUUA-A- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGU-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--AUUC| UGUU-GU-CA 1021 --GA-GAA-- GA-ACGU-GC --GUG-AGA( G----UAAC- -----U---) GUUC-AC-GU 1081 ---------- -------A-U U-GA-CGGU- A-UCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-UAG- 1321 -UGCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-GAAACUC -AAA-GGAAU UG-ACGGN-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAU 1981 -UCC-A--(- GAGA-)-UGG -A-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- UA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- ACN-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.agilis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus agilis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus agilis. ORGANISM Lactobacillus agilis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58803 BASE COUNT 392 a 329 c 434 g 334 t 2887 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UU---UUCAA UCAUC----- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACCG AUUGAA---- AAU|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CYAA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-A UR-A--U-G- ---ACC-(-- --------GC 541 AU-------- -)-NGU---- CA-UU----A UG-UAAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-A- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGU-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UNA UGGA|-GCAA CGCC-NC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| NGUU-GU-UA 1021 --GA-GAA-- GA-ACAU-GC --ARG-AGA( G----UAAC- -----U---) GUUC-UU-GU 1081 ---------- -------A-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-CC- 1261 U-UU-UAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-NAU- 1321 -UGCA-UUGG A-AAC-UGGA G-GCCUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AC----CAU 1981 -CUU-A--(- GAGA-)-UAA -G-AUUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CAA-AA-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-Y-G-C- AA-ACU-C(G 2881 -CGA)GGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CC NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-U-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.salivari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus salivarius subsp. salicinius str. H0268 ATCC 11742. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus salivarius subsp. salicinius str. H0268 ATCC 11742. ORGANISM Lactobacillus salivarius. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 11742 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59054 ATCC 11742 = DSM 20554 isolate_name= H0268 BASE COUNT 393 a 333 c 448 g 330 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----A CU---UUCUU ACACC----- ---------- ---------- ---------- 181 ---------- ---------- ----GAA-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACUC GUAAGA---- AGU|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUAA---A -AGAA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AUC---- ---------- -------U-C UA-A--G-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CC-UU----A GA-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UCUN--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUAG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-A- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGU-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| NGUU-GU-UA 1021 --GA-GAA-- GA-ACUC-GA --GUG-AGA( G----UAAC- -----U---) GUUC-AU-UC 1081 ---------- -------G-A U-GA-CGGU- A-UCU-A-AC C-AG--CAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -GA-G-UAG- 1321 -UGCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAACG AGU-C-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCUU-AAAG -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.aviarius 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus aviarius. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus aviarius. ORGANISM Lactobacillus aviarius. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58808 ATCC 43234 = DSM 20655 BASE COUNT 392 a 322 c 431 g 334 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----A AU---UUCUU ACACC----- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ------ACCG UAAGNN---- AUU|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-G C-CCAA---A -AGAA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AAAU-G--C UAAUACC-GU 481 AU-AAC---- ---------- -------C-A UG-A--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CA-UU----A UG-UAAAA-- ---GGUNGU- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-A- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACN-A A|-GGU-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NUA-C-UCC -(UACG)--G GAG-NN-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--AUUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUAU-GA --GUA-AUA( G----UAAC- -----U---) GAUU-AU-UC 1081 ---------- -------A-C U-GA-CGGU- A-UCU-A-AC C-AG--CAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- ACG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-N UU-CGG-C(- UU-A)A-CCG -GA-G-AUG- 1321 -UGCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------UU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AC----CAC 1981 -CUA-A--(- GAGA-)-UUA -G-GNNU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AA-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CN-CU-C- U-GGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAACG AGU-C-G-C- GA-RAC-C(G 2881 -CGA)GGUU- ---------- AA-GCUAA-U CUCUU-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGG-A-GU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GU-CU A-AGGU-GGG ACA-GA-NG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.8 L.CASEI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.8 L.CASEI_SUBGROUP. ORGANISM 2.16.8.15.8 L.CASEI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sharpeae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sharpeae. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sharpeae. ORGANISM Lactobacillus sharpeae. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58831 DSM 20505 = ATCC 49974 BASE COUNT 392 a 336 c 451 g 323 t 2874 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----C U----UAACU UAAUGAAUGA ---------- ---------- ---------- 181 ---------- ---------- -----RG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -GAAUGAYUU AAGAGC---- -GG|-UG--- AGUG-GCGG- 361 -A-UG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUUC---U -AGCA-G-GG 421 -GAU-AA-CA U--------- ------CU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAA---- ---------- -------U-C GU-C--A-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UU-GA----C GC-UGAAA-- ---GGCGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGU--C- A--CUA---- 661 ----GAAG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-CCACC-A A|-GAC-CG- UGA------- -----UG-CA 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UG 1021 --AA-GAA-- GA-ACAC-UA --GUG-AGA( G----UAAC- -----U---) GUUC-AU-UA 1081 ---------- -------G-U U-GA-CGGU- A-UUC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-NGG-C(- UC-A)A-CCG -GG-N-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -N-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---UCUG--- -CC----AAC 1981 -CUA-A--(- GAGA-)-UUA -G-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GC-GCUAA-U CUCUU-AAAG -CC-G-GUC- UCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGNNC- NUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CCCU-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-U-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.rhamnosu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus rhamnosus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus rhamnosus. ORGANISM Lactobacillus rhamnosus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58815 Former RDP Sids: L.cas.rham DSM 20021 (T) = IMET 10691 = NCIMB 6375 = NCDO 243 = CCM 1825 = ATCC 7469 = ATTC 7469 = JCM 1136 NB: former name Lactobacillus casei subsp. rhamnosus BASE COUNT 384 a 327 c 450 g 332 t 2883 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UGAUU AUUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUU AAUUUU---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-NCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGN NNNGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-N-NAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GNNU--- NC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUN-A..... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.rhamnos2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus rhamnosus. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus rhamnosus. ORGANISM Lactobacillus rhamnosus. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kawai,Y., Inoue,N. and Shinano,H. TITLE Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa JOURNAL Int. J. Syst. Bacteriol. 47 (1), 54-57 (1997) STANDARD No information REFERENCE 2 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16552|g1848056 JCM 1136 = IMET 10691 = NCIMB 6375 = NCDO 243 = CCM 1825 = ATCC 7469 = DSM 20021 (T) = ATTC 7469 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 392 a 336 c 455 g 332 t 2861 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GRU -SAAC-GC-- USGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UGAUU AUUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---AAGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-UCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUU AAUUUU---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-N-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUN-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG NCA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei_ca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. casei JCM 1134. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. casei JCM 1134. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kawai,Y., Inoue,N. and Shinano,H. TITLE Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa JOURNAL Int. J. Syst. Bacteriol. 47 (1), 54-57 (1997) STANDARD No information REFERENCE 2 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16551|g1848055 JCM 1134 = NCDO 161 = ATCC 393 = DSM 20011 (T) NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 392 a 341 c 463 g 324 t 2856 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UU---UGGUC GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---ACGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGW- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC RACUUA---- AAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUCAA-- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. casei NCDO 161. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. casei NCDO 161. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Collins,M.D. and Martinez-Murcia,A.J. TITLE Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by RT sequencing of 16S rRNA JOURNAL FEMS Microbiol. Lett. 77, 5-12 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X61135 NCDO 161 = ATCC 393 = JCM 1134 = DSM 20011 (T) BASE COUNT 319 a 331 c 435 g 313 t 2978 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UNAAAUG AGAGUN(U-G A)U-CCU|-G 61 GCUCNG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--N AUNC-NUGCN A-GUC-GAAC 121 G--AG----U NU---UGGUC GAUGAA---- ---------- ---------- ---------- 181 ---------- ---------- ----CGG-UG (--CU----- ---------- ---------- 241 --------UG -)CU-CUNNN AUUC...... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ...G-GCGG- 361 -N-CG-GG-U NNGU---NNC -NC-GUGGG- UNA--CCU-N C-CCUU---U -AGUN-G-GG 421 -GAU-NA-CN U--------- ------CU-- G(-GANA-)C -NGAU-G--C UNNUNCC-GC 481 UU-NNA---- ---------- -------U-C CU-A--G-G- ---ACN-(-- --------GC 541 AU-------- -)-NGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---UUNA--- ---)------ ---------| -NNUNU--C- G--CUN---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -NUUGG-G-A 841 (CUGA-GA-C NCG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CACNAU-- GG-AC-(GCN A)-GUC-UGA UGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--NU-CG --)GA-UCGU NAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUNG-UC --GNC-AGA( G----UNAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--NAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCN--GCNGC CGCGGUN-A) U-N-C-GNAG |-GUGG-C-- 1201 NAG-CGUCAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CC- 1261 U-UU-AAG|U CUG---AUGU G-AAA--C-C CU-CGG-C(- UU-A)A-CCG -AG-G-NAG- 1321 -NGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UNCAG-UGC 1741 CG--CA---- --NN-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU NG-NCGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCN -G-GUNU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GN---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-UN-N |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACN-CN-C GUG--CUACN AUGGA-U-GG -UA--CNACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCNGUUCGGA 2941 C-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -CGAAGU-CG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-NUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -NUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-N-A G-CC-GU-CU A-AGGU-NGG ACN-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. casei ATCC 393. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. casei ATCC 393. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23928 ATCC 393 = NCDO 161 = JCM 1134 = DSM 20011 (T) BASE COUNT 395 a 349 c 465 g 335 t 2832 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UU---UGGUC GAUGAA---- ---------- ---------- ---------- 181 ---------- ---------- ----CGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----AGAUUC GACUUA---- AAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GYAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) C-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-NAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-NGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUN-AGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.case334 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. casei ATCC 334. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. casei ATCC 334. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS NB: only 13 differences from L.casei atcc393; 9 in 83 stem BASE COUNT 383 a 332 c 454 g 325 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-N 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UCGUU GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC AACAUG---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGN NNNNGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-N-NAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------N 1501 NCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GNUU--- NC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GN-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC NUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.prcasei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus paracasei. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus paracasei. ORGANISM Lactobacillus paracasei. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K., Kusumoto,K., Kawai,Y., Inoue,T. and Shinano,H. TITLE Comparative sequence analysis on the 16S rDNA of Lactobacillus casei subspecies JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D79212 NB: GB features incorrect, this is not complement BASE COUNT 391 a 341 c 464 g 325 t 2855 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UCGUU GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC AACAUG---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei_al 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. alactosus JCM 1133. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. alactosus JCM 1133. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kawai,Y., Inoue,N. and Shinano,H. TITLE Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa JOURNAL Int. J. Syst. Bacteriol. 47 (1), 54-57 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16548|g1848052 JCM 1133 = STTCC 27216 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 391 a 341 c 461 g 325 t 2858 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -SAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UCGUU GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC AACAUG---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-N UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGN ACA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei_pp 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. pseudoplantarum JCM 1181. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. pseudoplantarum JCM 1181. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kawai,Y., Inoue,N. and Shinano,H. TITLE Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa JOURNAL Int. J. Syst. Bacteriol. 47 (1), 54-57 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16549|g1848053 JCM 1181 = ATCC 25598 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 391 a 339 c 460 g 325 t 2861 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -SAAC-GC-- USGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UCGUU GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC AACAUG---- GAA|-CG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCN-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGNCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG N(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.casei_to 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus casei subsp. tolerans JCM 1171. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus casei subsp. tolerans JCM 1171. ORGANISM Lactobacillus casei. REFERENCE 1 AUTHORS Mori,K., Yamazaki,K., Ishiyama,T., Katsumata,M., Kobayashi,K ., Kawai,Y., Inoue,N. and Shinano,H. TITLE Comparative sequence analyses of the genes coding for 16S rRNA of Lactobacillus casei-related taxa JOURNAL Int. J. Syst. Bacteriol. 47 (1), 54-57 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D16550|g1848054 JCM 1171 = ATCC 25599 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 388 a 339 c 460 g 325 t 2864 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -SAAC-GS-- USGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----U UC---UCGUU GAUGA----- ---------- ---------- ---------- 181 ---------- ---------- ---UCGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----GAUUC AACAUG---- GAA|-CG--- WGUG-NCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AGA---- ---------- -------U-C CA-A--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-UU----G GC-UGAAA-- ---GAUGGC- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GCUAU--C- G--CUU---- 661 ----UUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GCA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CU(--UU-CG --)GG-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGG-UC --GGC-AGA( G----UAAC- -----U---) GUUG-UC-GG 1081 ---------- -------C-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CU-CGG-C(- UU-A)A-CCG -AG-G-AAG- 1321 -CGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUUG--- -AU----CAC 1981 -CUG-A--(- GAGA-)-UCA -G-GUUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 C-UGUAGGC- (UGCAAC-U- C)-GCCUACA -CGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AG-CAC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAGC-G-A G-CC-GU-CU A-AGGU-GGG ACA-AA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NUAG G(NGN-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.9 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.9 L.BIFERMENTANS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.9 L.BIFERMENTANS_SUBGROUP. ORGANISM 2.16.8.15.9 L.BIFERMENTANS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.corynifo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus coryniformis. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus coryniformis. ORGANISM Lactobacillus coryniformis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58813 ATCC 25602 = NCIMB 9711 (T) = JCM 1164 = DSM 20001 BASE COUNT 391 a 329 c 445 g 323 t 2888 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C UG---ACGUC GACCGAA--- ---------- ---------- ---------- 181 ---------- ---------- -----GC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGACGU UGAUUG---- ACG|-UN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCN-N C-CCUU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------C-A UU-C--A-G- ---ACC-(-- --------AC 541 AU-------- -)-GGU---- CU-NA----A UG-UAAAA-- ---GACGGC- ----C----- 601 --(------- ----UUU--- ---)------ ------G--| -GCUGU--C- N--CUU---- 661 ----UUGG-- ACG---G-|A CCCNC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-AG --)GA-UCGU AAA--ACUC| NGUU-GU-UG 1021 --GA-GAA-- GA-ACAG-GG --ACU-AGA( G----UAAC- -----U---) GUUA-GU-CC 1081 ---------- -------U-U U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-N UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UUAG A-AAC-UGGR A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CN- C-NNAA-GU- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UGU-A--(- GAGA-)-UAC -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGU-U-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AN)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ANA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGG-G-GU -AA-CCCU-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------A GGGAAC-U-A G-CC-GC-CN A-AGGU-GGG ACA-GA-NG- ANN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.bifermen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus bifermentans. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus bifermentans. ORGANISM Lactobacillus bifermentans. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58809 ATCC 35409 = DSM 20003 BASE COUNT 402 a 338 c 450 g 332 t 2854 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C UG---ACGUC GACAGAA--- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ----GGAAGU UGAUUG---- ACG|-UC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---A -AGCG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-G UU-G--A-G- ---AUC-(-- --------AC 541 AU-------- -)-NGU---- CU-UA----A UU-UGAAA-- ---GACGGC- ----C----- 601 --(------- ----UUU--- ---)------ ------G--| -GCUGU--C- A--CUU---- 661 ----AAGN-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-ACAG-GG --ACU-AGA( G----UAAC- -----U---) GUUA-GU-CC 1081 ---------- -------U-U U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C UU-CGG-C(- UU-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCAG A-UAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- N-NNAA-GU- AU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- A-CC-GU--A 1621 AAC-G-AUGA A--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCAUU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANCUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------U ---AGCG--- -CC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAACG AGU-U-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AN)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-NGG-G-GU -AA-CCUC-- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGC-U-A G-CC-GU-CN A-AGGU-GGG ACA-GA-UG- ANN-GGG... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.biferme2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus bifermentans. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus bifermentans. ORGANISM Lactobacillus bifermentans. REFERENCE 1 AUTHORS Mori,K. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D31680|g497799 BASE COUNT 62 a 60 c 64 g 50 t 4140 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .....CU-C- U-AAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -UA--CAACG AGU-U-G-C- GA-ACC-C(G 2881 -CGA)GGGU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- C......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.F.A 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.15.10 L.SAKE_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.15.10 L.SAKE_ISOLATE. ORGANISM 2.16.8.15.10 L.SAKE_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.sake 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus sake. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus sake. ORGANISM Lactobacillus sake. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58829 ATCC 15521 = DSM 20017 (T) BASE COUNT 394 a 336 c 447 g 330 t 2869 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUAAUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C UC---UCNUU UAGAUUGA-- ---------- ---------- ---------- 181 ---------- ---------- ----AGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- -CAUUGAUAA ACAUUU---- GAG|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUA---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-C CU-A--A-C- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- GU-AG----G GU-UGAAA-- ---GAUGGU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAU--C- A--CUU---- 661 ----UAGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GAC-CG- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----AA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UG 1021 --GA-GAA-- GA-AUGU-AU --CUG-AUA( G----UAAC- -----U---) GAUC-AG-GU 1081 ---------- -------A-G U-GA-CGGU- A-UCC-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCNGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-N UU-CGG-C(- UC-A)A-CCG -AA-G-AAG- 1321 -UGCA-UCGG A-AAC-UGGG A-AACUU-GA GUG-----CA G-AA-GAGGA CAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNNUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GU-CU A-AGGU-GGG ACA-GA-UG- AYC-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.G 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.16 CARNOBACTERIUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.16 CARNOBACTERIUM_GROUP. ORGANISM 2.16.8.16 CARNOBACTERIUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Aic.otitis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Alloiococcus otitis. ACCESSION No information KEYWORDS No information. SOURCE Alloiococcus otitis. ORGANISM Alloiococcus otitis. REFERENCE 1 AUTHORS Aguirre,M. and Collins,M.D. TITLE Phylogenetic analysis of Alloiococcus otitis gen. nov., sp. nov., an organism from human middle ear fluid. JOURNAL Int. J. Syst. Bacteriol. 42, 79-83 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59765 BASE COUNT 384 a 347 c 472 g 317 t 2856 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CC----- -----AAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UCUUCC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GGAAG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGC---- ---|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CUU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CC-- G(-GAAA-)C -GGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------U-U UU-C--C-C- ---AGU-(-- --------GC 541 AU-------- -)-GCU---- GG-GA----A AA-UAAAA-- ---GGUGG-- ---------- 601 --(------- ---CUCU--- ---)------ ---------| --NUAC--C- G--CUU---- 661 ----AUGG-- AUA---N-|N U-CGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-ANA-GG) -C-CUACC-A A|-GGC-CA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GU-(GCA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G AC(--UU-CG --)GU-UCGU AAA--GCUC| UGUU-GU-UG 1021 --GG-GAA-- GA-ACAC-GG --AUA-GGA( G----UCAC- -----U---) GCCU-AU-CC 1081 ---------- -------C-U U-GA-CGGU- A-CCC-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGA-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CC- 1261 G-GU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAC- 1321 -GGCA-UUGG A-AAC-UGGC G-GACUU-GA AUG-----UA G-CA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 GCU--AU-GA UUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--GA---- --GU-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-AGAAU UG-ACGGG-G -G-A-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---UCUG--- -CU----AGC 1981 -UUC-A--(- GAGA-)-UGA -A-GCGU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-G-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCCC-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUUC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CUG- AA-AC-ACCC -GAA-G-CCG 3121 G-CCG-G-GC -AA-CC---- ---------- ---------- -----(---- --AUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CG A-AGGU-GGG UUG-GA-UG- AUU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Dol.pigrum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Dolosigranulum pigrum str. R91/1468 NCFB 2975 (T). ACCESSION No information KEYWORDS No information. SOURCE Dolosigranulum pigrum str. R91/1468 NCFB 2975 (T). ORGANISM Dolosigranulum pigrum. REFERENCE 1 AUTHORS Aguirre,M., Morrison,D., Cookson,B.D., Gay,F.W. and Collins ,M.D. TITLE Phenotypic and phylogenetic characterization of some Gemella-like organisms from human infections: description of Dolosigranulum pigrum gen. nov., sp. nov. JOURNAL J. Appl. Bacteriol. 75, 608-612 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X70907|g437773 isolate_name= R91/1468 BASE COUNT 394 a 334 c 459 g 335 t 2854 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- -----GAU-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUCAC-UG (--CU----- ---------- ---------- 241 --------UG -)CA-GUGAU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----UG---- ---|-AU--U AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- GAA--CUU-G C-CCAU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-CC 481 AU-AGG---- ---------- -------U-G GA-U--U-G- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- GA-AU----U CA-UUAAA-- ---GGUGGC- ---------- 601 --(------- ----UUU--- ---)------ ---------| -GCUAC--C- A--CUC---- 661 ----AUGG-- AUA---N-|- U-CGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AG- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CUU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GG-GU-(GCA A)-ACC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAC-GU --GCU-AGG( U----A-AC- -----U---) ACUA-GC-GC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGA-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|--U-CU- 1261 G-UU-UAG|U CUA---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UG-G-AAC- 1321 -GGCA-UUGG A-AAC-UGAC A-GACUU-GA AUG-----UA G-AA-GAGGA AAA-U|GGAA 1381 UU-CCAAGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUUUCUG-- ---------- ---------- ---------G 1501 UCU--AA-CA UUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GCC -CUCGG-UGC 1741 UG--GA---- --GC-(UAA- ---C)G-UA- UUAA-GCACU C|C|G-CCU- G-GGGAUUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-AC-GG-G -G-A-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-C-UUA-CC AGC-UC-UUG ACA-UC|--- ---------U ---UCUG--- -AC----AAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- GCAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AG -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGC-A-G-C- GA-UCC-C(G 2881 -CAA)GGGC- ---------- UA-GCUAA-U CUUUC-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCACUC- (UGCAAC-U- C)-GAGUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUCC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- AA-AC-ACCC -GAA-G-UCG 3121 G-CCG-G-CC -AA-CCC--- ---------- ---------- -----(---- -UAU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CC-GU-CG A-AGGU-GGG UUG-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACC~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.G32 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bangombe boreholes. ACCESSION No information KEYWORDS No information. SOURCE Bangombe boreholes. ORGANISM Bangombe boreholes. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Hallbeck,L. and Pettersson,C. TITLE Investigations of subterranean bacteria in deep crystalline bedrock and their importance for the disposal of nuclear waste JOURNAL Can. J. Microbiol. 42, 382-391 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91284|g987032 library_source= Bangombe boreholes at depth of 5-105m DNA BASE COUNT 84 a 67 c 106 g 77 t 4042 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GUAG |-GUGA-C-- 1201 A-G-C-UUGU CC-GCAUUUA -UU-GGGC|G UUAA-GCG.. ........GC -G|-GU-CU- 1261 U--U-AAG|U CUG---AUGU G-AAAAGC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GNCUU-GA AUC-----CA G-AA-GAGGA AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA UUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--G----- ---M-(KAA- ---C)G-CA- UUAA-GCACU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Cac.alltoi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnococcus allantoicus str. NDP. ACCESSION No information KEYWORDS No information. SOURCE Carnococcus allantoicus str. NDP. ORGANISM Carnococcus allantoicus. REFERENCE 1 AUTHORS Tanner,R.S., Poynter,N.L., Mandelco,L. and Woese,C.R. TITLE Carnococcus allantoicus, gen. nov. and sp. nom. rev. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M98448|g437324 isolate_name= NDP BASE COUNT 383 a 340 c 449 g 314 t 2890 others ORIGIN 1 .......... .......... .......... ..NUUACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU----C UU---UUCUA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -CUGAG---- AAG|-AU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------CC-- G(-GAAA-)C -GNGU-G--C UAAUACC-GC 481 AUAGUUU--- ---------- -------U-C UU-G--A-U- ---CGC-(-- --------AU 541 GA-------- -)-UYG---- RG-AA----A GG-AAAGA-- ---CGGCCU- ---------- 601 --(------- ---UUGU--- ---)------ ---------| -GCUGU--C- G--CUU---- 661 ----AUGN-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAY-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UA-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AAA-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GA-GAA-- GA-ACAA-GU --UGG-AGA( G----UAAC- -----U---) GCUC-CA-GC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGNGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GNAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-NU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-N-NAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CN- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCGAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcs.paster 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactosphaera pasteurii str. KoTa2 DSM 2381 (T). ACCESSION No information KEYWORDS No information. SOURCE Lactosphaera pasteurii str. KoTa2 DSM 2381 (T). ORGANISM Lactosphaera pasteurii. REFERENCE 1 AUTHORS Janssen,P.H., Evers,S., Rainey,F.A., Weiss,N., Ludwig,W., Harfoot,C.G. and Schink,B. TITLE Lactosphaera gen. nov., a new genus of lactic acid bacteria, and transfer of Ruminococcus pasteurii Schink 1984 to Lactospaera pasteurii comb. nov JOURNAL Int. J. Syst. Bacteriol. 45, 565-571 (1995) STANDARD No information COMMENTS Organism information Culture collection: DSM 2381 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X87150|g1017428 DSM 2381 (T) = ATCC 35945 isolate_name= KoTa2 BASE COUNT 395 a 353 c 472 g 331 t 2825 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GU----C UU---UUCUA ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCCA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -CUGAG---- AAG|-AU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------CC-- G(-GAAA-)C -GGGU-G--C UAAUACC-GC 481 AUAGUUU--- ---------- -------U-C UU-G--A-U- ---CGC-(-- --------AU 541 GA-------- -)-UCG---- AG-AA----A GG-AAAGA-- ---CGGCCU- ---------- 601 --(------- ---UUGU--- ---)------ ---------| -GCUGU--C- G--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-CA 1021 --GA-GAA-- GA-ACAA-GU --UGG-AGA( G----UAAC- -----U---) GCUC-CA-GC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-G-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -A-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGC-A-G-C- AA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCGAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.altfun 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium alterfunditum. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium alterfunditum. ORGANISM Carnobacterium alterfunditum. REFERENCE 1 AUTHORS Spielmeyer,W.K., McMeekin,T.A., Miller,J.M. and Franzmann,P .D. TITLE Phylogeny of the Antarctic bacterium, Carnobacterium alterfunditum JOURNAL Polar Biol. 13, 501-503 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08623 BASE COUNT 395 a 361 c 472 g 321 t 2827 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAN-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU-UU-G AC---UUCAC C--------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ACCGAA---- GUC|AAG--G AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------U-C UA-A--A-C- ---GUC-(-- --------AC 541 AU-------- -)-GAC---- GA-AU----A GA-AGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- G--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----AAC 1981 -CCU-A--(- GAGA-)-UAG -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -CU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UG-GC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.fundit 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium funditum str. pf3 DSM 5970. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium funditum str. pf3 DSM 5970. ORGANISM Carnobacterium funditum. REFERENCE 1 AUTHORS Franzmann,P.D., Hopfl,P., Weiss,N. and Tindall,B.J. TITLE Psychrotrophic, lactic acid-producing bacteria from anoxic waters in Ace Lake, Antarctica; Carnobacterium funditum sp. nov. and Carnobacterium alterfunditum sp. nov. JOURNAL Arch. Microbiol. 156, 255-262 (1991) STANDARD No information COMMENTS Organism information Culture collection: DSM 5970 Sequence information (bases 1 to 4376) Corresponding GenBank entry: S86170 isolate_name= pf3 BASE COUNT 392 a 344 c 458 g 323 t 2859 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U CU---UUCCU A--------- ---------- ---------- ---------- 181 ---------- ---------- --UUGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- CUGGAA---- AGA|-GG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------U-C UG-A--U-U- ---GCC-(-- --------GC 541 AU-------- -)-GNG---- AA-CG----G AU--GAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUGC--C- G--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GNGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GNA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-C- 1081 ---------- -------C-C U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CAUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-AUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GA-C CC-CAG-C(- UC-A)A-CUG -GG-G-AAG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -GG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--AUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GAU-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.mobile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium mobile. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium mobile. ORGANISM Carnobacterium mobile. REFERENCE 1 AUTHORS Wallbanks,S., Martinez-Murcia,A.J., Fryer,J.L., Phillips,B.A. and Collins,M.D. TITLE Carnobacterium and related lactic acid bacteria and and Description of Vagococcus salmoninarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 224-230 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54271 BASE COUNT 334 a 317 c 400 g 285 t 3040 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- UNA--CCN-G C-CCAU---A -AGUG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------U-C CA-A--C-C- ---ACC-(-- --------UC 541 CU-------- -)-GGU---- GG-AU----G GA-UAAAA-- ---GACGGU- ---------- 601 --(------- ---UUCC--- ---)------ ---------| -GCUGU--C- G--CUN---- 661 ----AUNG-- AUN---G-|A CCCGC----- -GG|----CG U--NUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-NA- UGA------- -----UG-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|N-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUN| UGUU-GU-UA 1021 --GA-GAA-- GA-ACNA-GG --AUG-AGC( G----UAAC- -----U---) NCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UCU-N-AC C-AG--AAAG ---------C 1141 -CAUGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-AUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CAG-C(- UC-N)A-CUG -GG-N-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUN AG-G------ -------CU- C-GNAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GAC-C(G 2881 -CGA)GGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCNGUUCGGA 2941 U-UGCAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -NA-CCC--- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CC-GC-CU A-AGGU-NGG AUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.diver1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium divergens. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium divergens. ORGANISM Carnobacterium divergens. REFERENCE 1 AUTHORS Wallbanks,S., Martinez-Murcia,A.J., Fryer,J.L., Phillips,B.A. and Collins,M.D. TITLE Carnobacterium and related lactic acid bacteria and and Description of Vagococcus salmoninarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 224-230 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54270 NCDO 2763 = ATCC 25677 = DSM 20623 (T) BASE COUNT 364 a 339 c 435 g 316 t 2922 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UUAUAUG AGAGUU(N-G A)U-CCU|-N 61 GCUCAG-GAC -GAAU-GC-- UNGC-GGC-A -UGC-CU--N AUAC-AUGNN A-GUC-GAAC 121 G--CN----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAA-AG (--CU----- ---------- ---------- 241 --------UN -)CU-UUCCG AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CAA---- --G|-UN--- AGUN-GCGG- 361 -A-CG-GG-U NAGU---NAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------U-C AA-G--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CG-CU----U GA-UGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNC--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-NAU-GG) -C-UCACC-A A|-GGC-CA- UGA------- -----UG-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UCC 1741 UG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- A-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCG-A--(- GAGA-)-UCG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCN UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-AGU-C(G 2881 -UGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.diverg 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium divergens. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium divergens. ORGANISM Carnobacterium divergens. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58816 ATCC 25677 = DSM 20623 (T) = NCDO 2763 BASE COUNT 383 a 333 c 443 g 318 t 2899 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUCG AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --NNAA---- --G|-UA--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AUU---- ---------- -------U-C AA-G--U-G- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- CG-CU----U GA-UGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- N--CUU---- 661 ----AUGG-- AUG---G-|A CCCNC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-CA- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CN- N-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCG-A--(- GAGA-)-UCG -A-GNNU--- UC-------- ---CN----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-AGU-C(G 2881 -UGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGN-UC UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UA- AUN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.gallin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium gallinarum. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium gallinarum. ORGANISM Carnobacterium gallinarum. REFERENCE 1 AUTHORS Wallbanks,S., Martinez-Murcia,A.J., Fryer,J.L., Phillips,B.A. and Collins,M.D. TITLE Carnobacterium and related lactic acid bacteria and and Description of Vagococcus salmoninarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 224-230 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54269 BASE COUNT 371 a 336 c 435 g 313 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UUAUAUG AGAGUU(N-G A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGNN A-GUC-GAAC 121 G--CN----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGGAA-AG (--CU----- ---------- ---------- 241 --------UN -)CU-UUCUA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CAA---- --G|-UN--- AGUN-GCGG- 361 -A-CG-GG-U NAGU---AAC -AC-GUGGG- UAA--CCN-G C-CCAU---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AGU---- ---------- -------U-U CA-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-NAU---- UC-UU----G AA-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNC--C- A--CUU---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(AUCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-AUAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- N-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- A-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNUG--- -AC----CAU 1981 -UCU-G--(- GAGA-)-CAG -A-ACUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.pisci1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium piscicola. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium piscicola. ORGANISM Carnobacterium piscicola. REFERENCE 1 AUTHORS Wallbanks,S., Martinez-Murcia,A.J., Fryer,J.L., Phillips,B.A. and Collins,M.D. TITLE Carnobacterium and related lactic acid bacteria and and Description of Vagococcus salmoninarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 224-230 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54268 NCDO 2762 = ATCC 43225 = DSM 20722 (T) BASE COUNT 371 a 337 c 438 g 315 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UUAUAUG AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGNN A-GUC-GAAC 121 G--CN----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAG-AG (--CU----- ---------- ---------- 241 --------UC -)CU-CUUUN AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CAA---- --G|-UN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---U -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AGU---- ---------- -------U-U CA-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-NAU---- UC-UU----G AA-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUA---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-NA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-N NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACNA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUN AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAN- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- A-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-NGG AUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.maltaro2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus maltaromicus str. MX5 JCM 1154. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus maltaromicus str. MX5 JCM 1154. ORGANISM Lactobacillus maltaromicus. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Nucleotide sequence of 16S ribosomal RNA from Lactobacillus maltaromicus and phylogenetic analysis JOURNAL Unpublished (1992) STANDARD No information COMMENTS Organism information Culture collection: JCM 1154 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54420 JCM 1154 = DSM 20342 = ATCC 27865 = NCIMB 11966 (T) isolate_name= MX5 NB: 1095r-1102r repeated in tandem BASE COUNT 363 a 337 c 436 g 307 t 2933 others ORIGIN 1 .......... .......... .......... ....UAUAUG AGAGUU(N-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCN A-GUC-GAAC 121 G--CN----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CUNNA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CAA---- --G|-UN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UNA--CCU-N C-CCAU---U -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AGU---- ---------- -------U-U CA-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-NAU---- UC-UU----G AA-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUNC--C- A--CUA---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-CGCNAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--ACUC| UGUU-GU-UN 1021 --AA-GAA-- GA-ACNA-GG --AUG-AGA( G----UNAC- -----U---) GCUN-AU-C- 1081 ---------- -------C-C U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------N 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CNG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UN-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CN G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- ---C-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -NNNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNNG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AAUCCCGCAA CGAG-C--GC NACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-NA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Crn.piscic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Carnobacterium piscicola. ACCESSION No information KEYWORDS No information. SOURCE Carnobacterium piscicola. ORGANISM Carnobacterium piscicola. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58812 ATCC 43225 = DSM 20722 (T) = NCDO 2762 BASE COUNT 385 a 333 c 442 g 316 t 2900 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CAA---- --G|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---U -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AGU---- ---------- -------U-U CA-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-UU----G AA-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUA---- 661 ----AUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCNN -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UNUU-GU-UA 1021 --AA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CC 1081 ---------- -------C-U N-NA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CN-CNG-C(- UC-A)A-CCG -GG-N-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CN-NNAACUC -AAA-GGAAU UG-NCGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGNC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UA- AUU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.maltarom 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus maltaromicus str. MX5 ATCC 27865. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus maltaromicus str. MX5 ATCC 27865. ORGANISM Lactobacillus maltaromicus. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27865 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58825 ATCC 27865 = DSM 20342 = NCIMB 11966 (T) = JCM 1154 isolate_name= MX5 BASE COUNT 383 a 331 c 449 g 315 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UGA--CNN-G C-NNAU---U -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- G(-GAAA-)C -GGAU-G--C UAAUACC-GC 481 AU-AGU---- ---------- -------U-U CA-G--G-R- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-UU----G AA-GGAAA-- ---GGUGGC- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GCUAC--C- A--CUA---- 661 ----AUGG-- AUG---G-|A CCCNC----- -GG|----CG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----CA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --AA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAAC- -----U---) GCUC-AU-CN 1081 ---------- -------C-C U-GA-CGGU- A-UUU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C NN-NGG-C(- UC-A)A-CCG -GG-N-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCACGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UG-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GU---| CAA-AG-UGA |---C|A--G 2161 GU-GN-NNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- AA-GGU-C(G 2881 -CGA)GGCC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-NA- AUN-NGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.H 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.17 VAGOCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.17 VAGOCOCCUS_GROUP. ORGANISM 2.16.8.17 VAGOCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vag.salmon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vagococcus salmoninarum str. OSI-68 NCFB 27777 (T). ACCESSION No information KEYWORDS No information. SOURCE Vagococcus salmoninarum str. OSI-68 NCFB 27777 (T). ORGANISM Vagococcus salmoninarum. REFERENCE 1 AUTHORS Wallbanks,S., Martinez-Murcia,A.J., Fryer,J.L., Phillips,B.A. and Collins,M.D. TITLE 16S rRNA Sequence Determination for Members of the Genus Carnobacterium and related lactic acid bacteria and and description of Vagococcus salmoninarum sp. nov. JOURNAL Int. J. Syst. Bacteriol. 40, 224-230 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54272 NCFB 27777 (T) = NCIMB 13133 = ATCC 51200 isolate_name= OSI-68 BASE COUNT 362 a 335 c 430 g 321 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ....UUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CN----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- GUUGAAG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CUUUA AC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CUA---- --G|-UN--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UNA--CCN-G C-CCAU---U -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------U-G UU-U--U-A- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- UG-AG----A UA-UGAAA-- ---GACGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGUGU--C- A--CUA---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GC|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-CG- UNA------- -----UG-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GU --GGG-AGA( G----UAAC- -----U---) GUUC-CC-AC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CAG-GU -G|-GU-UC- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CC-CGG-C(- UC-N)A-CCG -GG-C-AGG- 1321 -GUCA-UUGG A-AAC-UGGG G-NACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUN AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GU-(NNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-NAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUUG--- -AC----CAC 1981 -UCG-A--(- GAGA-)-UCA -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGA-C-NG -UA--CAAUG AGU-U-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- UA-GCUAA-U CUCUU-AAAG -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -NGA-AC)-G CCA-CGGUN- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAA A--GU-UUG- UA-GC-ACCC -GAA-A-UCG 3121 G-UGA-G-GU -NA-CC---- ---------- ---------- -----(---- -CUUGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-NAG AUA-GA-U.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Vag.fluvia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Vagococcus fluvialis. ACCESSION No information KEYWORDS No information. SOURCE Vagococcus fluvialis. ORGANISM Vagococcus fluvialis. REFERENCE 1 AUTHORS Collins,M.D., Ash,C., Farrow,J.A., Wallbanks,S. and Williams ,A.M. TITLE 16S Ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. JOURNAL J. Appl. Bacteriol. 67, 453-460 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54258 NCDO 2497 = ATCC 49515 (T) NB: same as DeWachter seq177; RT (with transcription errors in old 177) BASE COUNT 373 a 334 c 424 g 307 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~....AUUG AGAGUU(U-N A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UNC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UG---AUUUU CACC------ ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GAAAAU---- CAA|-AG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CCAA---C -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------U-U GU-U--U-U- ---CCC-(-- --------GC 541 AU-------- -)-GGG---A GA-AU----U AA-UAAAA-- ---GACGC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GUGU--N- A--CUG---- 661 ----UUGG-- AUG---G-|G CCCGC----- -GC|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-CG- UGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UNA CCGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UN(--UU-CG --)GA-UCGU AAA--ACUC| UNUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GU --GGG-AGA( G----UAAC- -----U---) NUUC-CC-AC 1081 ---------- -------C-U N-NA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUN---AUGU G-AAA-GC-C CU-CGG-C(- UC-A)A-CCG -AG-N-AAG- 1321 -GUCA-UUGG A-AAC-UGGG G-AACUU-GA AUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-N)GCGA- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA UUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GU-(NAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNNG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUN--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UA-A |-UU--AUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAUG AGU-C-G-C- GA-GAC-C(G 2881 -CGA)GGUU- ---------- GA-GCUAA-U CUCUU-AAAG -CC-G-UNC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UNGUA-AUC 3001 GU-GGA-(UC -AGC-AC)-G CCA-CGCUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AAA-G-UCG 3121 G-UGA-G-GU -NA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.I 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.18 ENTEROCOCCUS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.18 ENTEROCOCCUS_GROUP. ORGANISM 2.16.8.18 ENTEROCOCCUS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.hirae2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus hirae. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus hirae. ORGANISM Enterococcus hirae. REFERENCE 1 AUTHORS Sechi,L.A., Fazari,S. and Daneo-Moore,L. TITLE Characterization of intergenic spaces in rrn in Enterococcus hirae ATCC 9790 JOURNAL J. Bacteriol. 175, 3213-3219 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L00924|g148319 (bases 1 to 613) NB: 1st 20 bases of L00924 duplicated (and removed) from 5' end same as L00925 (Eco.hirae) except for beginning base L00924 bases 614..799 are not 16S even tho annotated as such BASE COUNT 141 a 154 c 160 g 137 t 3784 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 C-A--CA-AG CGAAGA-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--C-AAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-A------- -------CCG --GA(-CG-C AA)-CGC--- --------GU 2761 G-CG-GG--A UGCACGC-UC -A-AAUC-AU CAU-G-CC-C CUUAU-GCAC -CU--GGGC- 2821 U-ACA-CA-C GCU--GCUCA AUGGG-A-AG -UA--CAACG AGU-C-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCG-G----C CUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 GGUGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AGA-U--UG- AUUGGGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCG-C--UG GAUCACCUUC 3361 CUUU|CU.~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.hirae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus hirae. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus hirae. ORGANISM Enterococcus hirae. REFERENCE 1 AUTHORS Sechi,L.A., Fazari,S. and Daneo-Moore,L. TITLE Sequence of two intergenic spaces in rDNA in Enterococcus hirae ATCC 9790 JOURNAL J. Bacteriol. 175, 3213-3219 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L00925 BASE COUNT 141 a 154 c 161 g 137 t 3783 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .........G 1861 C-A--CA-AG CGAAGA-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--C-AAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-A------- -------CCG --GA(-CG-C AA)-CGC--- --------GU 2761 G-CG-GG--A UGCACGC-UC -A-AAUC-AU CAU-G-CC-C CUUAU-GCAC -CU--GGGC- 2821 U-ACA-CA-C GCU--GCUCA AUGGG-A-AG -UA--CAACG AGU-C-G-C- AA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCG-G----C CUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 GGUGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AGA-U--UG- AUUGGGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCG-C--UG GAUCACCUUC 3361 CUUU|CU.~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.columb 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus columbae str. STR 345 NCIMB 13013. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus columbae str. STR 345 NCIMB 13013. ORGANISM Enterococcus columbae. REFERENCE 1 AUTHORS Devriese,L.A., Ceyssens,K., Rodrigues,U.M. and Collins,M.D. TITLE Enterococcus columbae, a species from pigeon intestines ribosomal RNA. JOURNAL FEMS Microbiol. Lett. 71, 247-252 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X56422 isolate_name= STR 345 BASE COUNT 376 a 334 c 434 g 301 t 2931 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CA----C UU---UCUUU CACC------ ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GAAAGU---- AAG|-UN--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---UAC -AC-GUGGG- UAA--CCU-G C-CCAU---C -AGCG-G-GG 421 -GAU-AA-CN C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- ---------A UU-A--C-UN ---NNC-(-- --------GC 541 AU-------- -)-GAG---A AG-UN----A UU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| GCGUN----- A--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--NUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CUACC-A A|-GGC-NA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GCA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UN(--NN-CG --)GA-UCGU NAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-GG --AUG-AGA( G----UGGAA -----A---) GUUC-AU-CC 1081 ---------- -------C-U N-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUNN-C-- 1201 AAG-CGUUNU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 U-UU-AAG|U CUN---AUGU G-AAA-GC-C CA-CGG-C(- UU-A)A-CCG -UN-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGCAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- NU-GGG-NA- 1561 GG-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UN--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNUG--- -AC----CAU 1981 -CCU-A--(- GAGA-)-UAG -G-ACNN--- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -NU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-AG -UA--CAACG AGU-U-G-C- GA-AGU-C(G 2881 -UGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-C-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UN UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-NGAG A--GU-UUG- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- -GCNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.cecoru 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus cecorum.. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus cecorum. ORGANISM Enterococcus cecorum. REFERENCE 1 AUTHORS Williams,A.M., Farrow,J.A.E. and Collins,M.D. TITLE Reverse transcriptase sequencing of 16S ribosomal RNA from Streptococcus cecorum JOURNAL Lett. Appl. Microbiol. 8, 185-189 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54290 Former RDP Sids: Stc.cecoru NB: former name Streptococcus cecorum BASE COUNT 374 a 335 c 444 g 304 t 2919 others ORIGIN 1 .......... .......... .......... .....UUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGN-G -UGC-CU--A AUAC-AUGCA A-GUG-CAAC 121 G--CA----U UU---UCUUU CACC------ ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GGAAGA---- AAA|-UG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-N C-CCAU---C -AGCG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-NAU---- ---------- ---------U CC-A--U-NU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A GA-UG----G AU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --GCGU--N- A--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUN-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-UA- CGA------- -----UG-CA 781 U-AG-C-NG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GCA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UGGAA -----A---) GUUC-AU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-CU- 1261 G-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UN-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- G-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UNNG--- -AC----CAU 1981 -CCU-A--(- GAGA-)-UAG -G-GNNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-N |-UU--NUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --CA(-GA-C AA)-UGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-G-AG -UA--CAACG AGU-C-G-C- AA-AGC-C(G 2881 -CGA)GGCU- ---------- NA-GCCAA-U CUCUN-AAAG -CU-N-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AAA-G-CCG 3121 G-UGC-G-GU -NA-CC---- ---------- ---------- -----(---- -GNAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GU-CU A-AGGU-GGG AUA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.BAW1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. BAW1. str. BAW1. ACCESSION No information KEYWORDS No information. SOURCE str. BAW1. str. BAW1. ORGANISM str. BAW1. REFERENCE 1 AUTHORS Lawes,A.M., Vercoe,P.E. and White,B.A. JOURNAL Unpublished (1994) STANDARD No information COMMENTS amplification_primer= 5':GTTTGATCCTGGCTCAG amplification_primer= 5':ACGG(C/T)TACCTTGTTACGACTT legacy_attribute= purified by A.Lawes legacy_attribute= bacteria originally supplied by M.T. Yokoyama , Mich. State Univ. isolate_name= BAW1 NB: from D.A. Stahl's lab:Bact1512AR 5'ACG G(C/T)T ACC TTG TTA CGA CTT3' from D.A. Stahl's lab:Bact 11F 5' GTT TGA TCC TGG CTC AG 3' BASE COUNT 389 a 351 c 456 g 325 t 2855 others ORIGIN 1 .......... .......... .......... .......... ..UGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U UU---UCUUU CACC------ ---------- ---------- ---------- 181 ---------- ---------- -----GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GAAAGA---- AAA|-AG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---C -AGAA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- ---------A CU-A--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GGA---A GA-AA----G UU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --GCGU--C- A--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UAGAA -----C---) GUUC-AU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G--C(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GCC GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG C-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCUCCC- GUC-ACA--- --CCACCGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG UUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.sulfur 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus sulfureus str. MUTK 31 NCDO 2379. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus sulfureus str. MUTK 31 NCDO 2379. ORGANISM Enterococcus sulfureus. REFERENCE 1 AUTHORS Martinez-Murcia,A.J. and Collins,M.D. TITLE Enterococcus sulfureus, a new yellow-pigmented Enterococcus species JOURNAL FEMS Microbiol. Lett. 80, 69-74 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCDO 2379 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55133 isolate_name= MUTK 31 BASE COUNT 379 a 336 c 448 g 321 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...UUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAAC 121 G--CU----U CU---UACUU AUC------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CAAGUA---- AGA|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---C -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UNAUACC-GC 481 AU-AAU---- ---------- ---------U CA-G--U-UU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A GA-GU----G AU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---UUUU--- ---)------ ---------| --GCGU--C- A--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( G----UNAAA -----U---) GUUG-AU-CC 1081 ---------- -------C-U N-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AA -UA--CAACG AGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -UU-U-CUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.saclyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus saccharolyticus. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus saccharolyticus. ORGANISM Enterococcus saccharolyticus. REFERENCE 1 AUTHORS Rodrigues,U. and Collins,M.D. TITLE Phylogenetic analysis of Streptococcus saccharolyticus based on 16S rRNA sequencing. JOURNAL FEMS Microbiol. Lett. 71, 231-234 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55767 (bases 1 to 1293) Former RDP Sids: Stc.sac594 NCDO 2594 = ATCC 43076 (T) NB: former name Streptococcus saccharolyticus BASE COUNT 354 a 325 c 429 g 303 t 2965 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~UUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----N CU---UUUCC GCC------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AU UGGAAA---- AGA|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUGGG- UAA--CCU-G C-CCNG---- ---------- 421 ---------- ---------- ---------- -(------)- ----U-G--C N......... 481 .......... .......... .......... ..-...U-UU ---CUC-(-- --------GC 541 AU-------- -)-GAG---A GA-AA----G CU--GAAA-- ---GGCGC-- ---------- 601 --(------- ---NUUU--- ---)------ ---------| GCGUNU--C- A--CUG---- 661 ----AUGG-- AUG---N-|N CCCNC----- -GG|----UG N--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UNACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|U-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --AUG-AGA( A----GAGAA -----U---) GUUC-AU-CC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG -CA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-N-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GG-GGA-(UC -AGC-AN)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-C-CU -NA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.12316 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus sp.. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus sp. ORGANISM Enterococcus sp. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76177|g517387 BASE COUNT 369 a 324 c 443 g 299 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .....GG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- -------ACC GGAAAA---- AGA|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCAU---C -AGAA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAC---- ---------- ---------A AU-C--G-AC ---ACC-(-- --------GC 541 AU-------- -)-GGU---G UU-GA----U UU--GAAA-- ---GGCGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGUGU--C- G--CUG---- 661 ----AUGG-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GA --GUGANGA( G----UAAC- -----U---) GUUC-AC-UC 1081 ---------- -------C-U U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|--U-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG---AGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)AUGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAAGUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- CC-------- ---------- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GG---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-NN -NN--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-U-G-C- GA-AGU-C(G 2881 -CGA)GGCU- ---------- AA-GCUAA-U CUCUU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.faecal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus faecalis.. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus faecalis. ORGANISM Enterococcus faecalis. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS BASE COUNT 387 a 355 c 463 g 327 t 2844 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUAUUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CU----U CU---UUCCU CCC------- ---------- ---------- ---------- 181 ---------- ---------- ----GAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AA UUGGAA---- AGA|-GG--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCAU---C -AGAG-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G UU-U--A-U- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- AU-AA----G AG-UGAAA-- ---GGCGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGUGU--C- G--CUG---- 661 ----AUNN-- AUG---G-|A CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAA-GG --ACG-UUA( G----UAAC- -----U---) GAAC-GU-CC 1081 ---------- -------C-C U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-N-NGG- 1321 -GUCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UAU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-N-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAACG AGU-C-G-C- UA-GAC-C(G 2881 -CGA)GGUC- ---------- AU-GCAAA-U CUCUU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-CAG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGG... 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlsc.plutn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Melissococcus pluton str. M43P NCDO 2443 (T). ACCESSION No information KEYWORDS No information. SOURCE Melissococcus pluton str. M43P NCDO 2443 (T). ORGANISM Melissococcus pluton. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Evidence for a close phylogenetic relationship between Melissococus pluton, the causative agent of European foulblood disease and the Enterococcus JOURNAL Int. J. Syst. Bacteriol. 44, 365-367 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCDO 2443 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75751|g511043 NCDO 2443 (T) = ATCC 35311 isolate_name= M43P BASE COUNT 365 a 308 c 428 g 291 t 2984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU---AAC -AC-GUGGG- CAA--CCU-G C-CCAU---C -AGAA-G-GG 421 -GAU-AA-CA U--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------A CU-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-GA----G UU--AAAA-- ---GGCGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGUGU--C- A--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUAG-GG --GAA-AGA( G----UAAC- -----U---) GUUU-UC-CU 1081 ---------- -------C-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|--U-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-GC G-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----CGC 1981 -CUU-A--(- GAGA-)-UAA -G-GUUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAA-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAGAG AGA-C-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCAAA-U CUCAU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UN -NGC-AC)-G CCG-CGGUG- AAUAC-GUU- CNN-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAA.. .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mlsc.plut2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Melissococcus pluton str. M40P NCDO 2440. ACCESSION No information KEYWORDS No information. SOURCE Melissococcus pluton str. M40P NCDO 2440. ORGANISM Melissococcus pluton. REFERENCE 1 AUTHORS Cai,J. and Collins,M.D. TITLE Evidence for a close phylogenetic relationship between Melissococus pluton, the causative agent of European foulblood disease and the Enterococcus JOURNAL Int. J. Syst. Bacteriol. 44, 365-367 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCDO 2440 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75752|g511044 isolate_name= M40P BASE COUNT 365 a 312 c 432 g 291 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .AGU---AAC -AC-GUGGG- CAA--CCU-G C-CCAU---C -AGAA-G-GG 421 -GAU-AA-CA C--------- ------UU-- G(-GAAA-)C -AGGU-G--C UAAUACC-GU 481 AU-AAG---- ---------- ---------A CU-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-GA----G UU--AAAA-- ---GGCGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGUGU--C- G--CUG---- 661 ----AUGG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUAG-GG --GAA-AGA( G----UAAC- -----U---) GUUU-UC-CU 1081 ---------- -------C-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|--U-UU- 1261 U-UU-AAG|U CUG---AUGU G-AAA-GC-C CC-CGG-C(- UC-A)A-CCG -GG-G-AGG- 1321 -GUCA-UUGG A-AAC-UGGA A-GACUU-GA GUG-----CA G-AA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|A -GU-GU-UGG -AG-GGU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------CCC -UUCAG-UGC 1741 UG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CG--C 1861 A-C--AA-GC G-GUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUUG--- -AA----CGC 1981 -CUU-A--(- GAGA-)-UAA -G-GUUU--- CU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAA-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-A-AG -UA--CAGAG AGA-C-G-C- AA-GAC-C(G 2881 -CGA)GGUU- ---------- AA-GCAAA-U CUCAU-AAAG -CU-U-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19 STREPTOCOCCI. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19 STREPTOCOCCI. ORGANISM 2.16.8.19 STREPTOCOCCI. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.1 LCC.LACTIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.1 LCC.LACTIS_SUBGROUP. ORGANISM 2.16.8.19.1 LCC.LACTIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lacti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. lactis str. f2d2. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. lactis str. f2d2. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Salama,M., Sandine,W. and Giovannoni,S. TITLE Development and application of oligonucleotide probes for identification of lactococcus lactis subsp. cremoris JOURNAL Appl. Environ. Microbiol. 57, 1313-1318 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M54920 isolate_name= f2d2 BASE COUNT 96 a 67 c 98 g 79 t 4036 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCAAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lacti4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. lactis NCDO 2118. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. lactis NCDO 2118. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Williams,A.M. Collins,M.D., Ash,C., Farrow,J.A.E., Wallbanks,S. and TITLE lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. 16S Ribisomal ribonucleic acid sequence analyses of JOURNAL J. Appl. Bacteriol. 67, 453-460 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54260 BASE COUNT 379 a 299 c 429 g 304 t 2965 others ORIGIN 1 .......... .......... .......... ......UUUG AGAGUU(U-N A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UNC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUNG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCGAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUNN---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UNAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUN---- NN-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUN---- 661 ----AAAG-- AUG---A-|U CCCNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GG-UA 1021 --GA-GAA-- GA-ACGU-UG --GUG-AGA( G----UGGAA -----A---) GCUN-AU-NA 1081 ---------- -------A-G U-NA-CGGU- A-ACU-A-CC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CUN---GUGU A-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UGGU A-GACUN-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-NA CUGACA-CUG AG-G------ -------CU- N-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUN -CUCUG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-NN-UNG ACA-UA|--- ---------C ---UNGUG-- -CU----NUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-NGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU GAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-GAC-A(G 2881 -UNA)UGUN- ---------- NA-GCUNA-U CUCUN-AAAA -CC-A-UNC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- N)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUN-ACA--- --CCA-CGGG A--GU-UGG- GA-GU-ACCC -GAA-G-UAG 3121 G-UUG-C-CU -NA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CU A-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lacti6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. lactis str. 7962. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. lactis str. 7962. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Salama,M., Sandine,W. and Giovannoni,S. TITLE Development and application of oligonucleotide probes for identification of lactococcus lactis subsp. cremoris JOURNAL Appl. Environ. Microbiol. 57, 1313-1318 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M54921|g174989 isolate_name= 7962 BASE COUNT 89 a 58 c 90 g 75 t 4064 others ORIGIN 1 .......... .......... .......... ...UUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCGAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA.... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lacti5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. lactis str. DRC-1. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. lactis str. DRC-1. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Salama,M., Sandine,W. and Giovannoni,S. TITLE Development and application of oligonucleotide probes for identification of lactococcus lactis subsp. cremoris JOURNAL Appl. Environ. Microbiol. 57, 1313-1318 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M55156|g174991 legacy_attribute= biovar:diacetylactis isolate_name= DRC-1 BASE COUNT 91 a 62 c 95 g 78 t 4050 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCGAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G.. 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lactis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. lactis ATCC 19435 (T). ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. lactis ATCC 19435 (T). ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE rRNA Phylogenetic analysis of the lactobacilli based upon 16S JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58837|g176046 ATCC 19435 (T) = DSM 20481 = NCIMB 6681 = NCDO 604 = BUCSAV 302 BASE COUNT 407 a 327 c 454 g 335 t 2853 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCGAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GG-UA 1021 --GA-GAA-- GA-ACGU-UG --GUG-AGA( G----UGGAA -----A---) GCUC-AU-CA 1081 ---------- -------A-G U-GA-CGGU- A-ACU-A-CC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CUG---GUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UGGU A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-NNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUU -CUCUG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGUG-- -CU----AUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-GAC-A(G 2881 -UGA)UGUU- ---------- UA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- GA-GU-ACCC -GAA-G-UAG 3121 G-UUG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CU A-AGGU-AAG ACC-GA-UG- ACN-NGGG-N 3301 N---NNNN-- GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.lacti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis str. IL 1403. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis str. IL 1403. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Chiaruttini,C. and Milet,M. TITLE analysis of a ribsomal RNA operon in lactococcus lactis Gene organization, primary structure and RNA processing JOURNAL J. Mol. Biol. 230, 57-76 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64887 isolate_name= IL 1403 BASE COUNT 410 a 332 c 465 g 341 t 2828 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ..UUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--C------ -----UGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGGUUGG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CCGAC UG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAU---- ---|--G--- AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AC 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GG-UA 1021 --GA-GAA-- GA-ACGU-UG --GUG-AGA( G----UGGAA -----A---) GCUC-AU-CA 1081 ---------- -------A-G U-GA-CGGU- A-ACU-A-CC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CUG---GUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAU- 1321 --GCA-UUGG A-AAC-UGGU A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUU -CUCUG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGUG-- -CU----AUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-GAC-A(G 2881 -UGA)UGUU- ---------- UA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- GA-GU-ACCC -GAA-G-UAG 3121 G-UUG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CU A-AGGU-AAG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.cremor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. cremoris ATCC 19257. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. cremoris ATCC 19257. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58836 ATCC 19257 = NCDO 607 = NCIB 8662 = DSM 20069 (T) BASE COUNT 398 a 316 c 445 g 328 t 2889 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--------- -----AUGA- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGAUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGAU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAAG---- ---|------ AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCNC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GG-UA 1021 --GA-GAA-- GA-ACGU-UG --GUG-AGA( G----UGGAA -----A---) GCUC-AU-CA 1081 ---------- -------A-G U-GA-CGGU- A-ACU-A-CC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-UU-AAG|U CUG---GUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAU- 1321 --GCA-UUGG A-AAC-UGGU A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -AU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUU -CUCUG-UAU 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ANNGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGUG-- -CU----AUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- GA-GAC-A(G 2881 -UGA)UGUU- ---------- UA-GCUAA-U CUCUU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGG A--GU-UGG- GA-GU-ACCC -GAA-G-UAG 3121 G-UUG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CU A-AGGU-AAG ACC-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.cremo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus lactis subsp. cremoris str. 205. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus lactis subsp. cremoris str. 205. ORGANISM Lactococcus lactis. REFERENCE 1 AUTHORS Salama,M., Sandine,W. and Giovannoni,S. TITLE Development and application of oligonucleotide probes for identification of lactococcus lactis subsp. cremoris JOURNAL Appl. Environ. Microbiol. 57, 1313-1318 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M54922 isolate_name= 205 BASE COUNT 97 a 66 c 97 g 80 t 4036 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAGC 121 G--------- -----AUGA- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGAUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCAAU UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAAG---- ---|------ AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- GAA--UCU-G C-CUUU---G -AGCG-G-GG 421 -GAC-AA-CA U--------- ------UU-- G(-GAAA-)C -GAAU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A CU-U--U-A- ---AAC-(-- --------AU 541 AA-------- -)-GUU---- UU-AA----G UU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUC---- 661 ----AAAG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCC. .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eco.seriol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Enterococcus seriolicida str. YT-3 ATCC 49156. ACCESSION No information KEYWORDS No information. SOURCE Enterococcus seriolicida str. YT-3 ATCC 49156. ORGANISM Enterococcus seriolicida. REFERENCE 1 AUTHORS Miller,J.M. TITLE 16S rRNA gene sequence of Enterococcus seriolicida JOURNAL Unpublished (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49156 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L32813|g493094 ATCC 49156 = CIP 104369 = DSM 6783 nat_host= Seriola quinqueradiata isolate_name= YT-3 BASE COUNT 399 a 324 c 445 g 319 t 2889 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAGC 121 G--------- -----AUGAU U--------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AUUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AUGAAG---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- AAA--UCU-G C-CGAG---U -AGCG-G-GG 421 -GAC-AA-CG U--------- ------UU-- G(-GAAA-)C -GAAC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-A--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-UU----A UU-UAAAA-- ---GAAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----CUUG-- AUG---A-|U CCCGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-GU-( GU-AAA-GG) -N-CNACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CN| -N-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGU-UA --AGU-AGA( G----UGGAA -----A---) AUUA-CU-UA 1081 ---------- -------A-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UGU- 1321 --GCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUU -CUCUG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGN-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGUG-- -CU----AUC 1981 -CUU-A--(- GAGA-)-UNA -G-GAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 NG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--ACU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GC-GCUAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- N)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGGA A--GU-UGG- GA-GU-ACCC -AAA-G-UAG 3121 G-UUG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-UC-CU A-AGGU-AAG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.garvie 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus garvieae. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus garvieae. ORGANISM Lactococcus garvieae. REFERENCE 1 AUTHORS Collins,M.D., Ash,C., Farrow,J.A., Wallbanks,S. and Williams ,A.M. TITLE 16S Ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. JOURNAL J. Appl. Bacteriol. 67, 453-460 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54262 BASE COUNT 377 a 313 c 435 g 310 t 2941 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.....AAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUC-GAGC 121 G--------- -----AUGAU U--------- ---------- ---------- ---------- 181 ---------- ---------- -AAAGAU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-NUUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- AUGAAG---- ---|------ AGCG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- AAA--UCU-G C-CGAG---U -AGCG-G-GG 421 -GAC-AA-CG U--------- ------UU-- G(-GAAA-)C -GAAC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-A--G-A- ---AUC-(-- --------GC 541 AU-------- -)-UAU---- UG-UU----N UU-UGAAA-- ---GAAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUN--C- A--CUN---- 661 ----CUNG-- AUG---A-|U CCCGC----- -GU|----NG U--AUNA-G- CUN-G---UU 721 GG-UA-GU-( GU-AAA-GG) -A-CUACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UNUU-GU-UA 1021 --GA-GAA-- GA-ACGU-UA --AGU-AGA( G----UGGAA -----A---) AUUA-CU-UA 1081 ---------- -------A-G U-GA-CGGU- A-UCU-N-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUNU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 C-UU-AAG|U CUG---AUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UGU- 1321 --GCA-UUGG A-AAC-UGGG A-GACUU-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -A-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -CU-GU-AGG -GA-GCU--- ---------- 1681 -(-AU-A-)- ---------- ---------- -A-------- -------GUU -CUCUG-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- ---------C ---UNGUG-- -CU----NUC 1981 -CUU-A--(- GAGA-)-UAA -G-GAGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UGGA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-N |-UU--NCU- 2281 NG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-NGU-NA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAACG AGU-C-G-C- CA-ACC-C(G 2881 -CGA)GGGU- ---------- GC-GCUAA-U CUCUU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- N)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGGA A--GU-UGG- GA-GU-ACCC -AAA-G-UAG 3121 G-UUG-C-CU -NA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-NC-CU N-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.planta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus plantarum. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus plantarum. ORGANISM Lactococcus plantarum. REFERENCE 1 AUTHORS Collins,M.D., Ash,C., Farrow,J.A., Wallbanks,S. and Williams ,A.M. TITLE 16S Ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. JOURNAL J. Appl. Bacteriol. 67, 453-460 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54259 NCDO 1869 = ATCC 43199 (T) NB: DeWachter seq134 BASE COUNT 377 a 306 c 420 g 318 t 2955 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.....AAUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUU-GAAC 121 G--C------ -----UGAAG ACUNGUAAAG ---------- ---------- ---------- 181 ---------- ---------- ---------- (--CU----- ---------- ---------- 241 --------NG -)-------- ---------- ---------- ---------- ---------- 301 ---------- ---------- -----UACNG UNGGAU---- ---|--G--- AGUA-GCGA- 361 -A-CG-GG-U GAGU---NAC -GC-GUGGG- UAA--CCU-G C-CNCU---U -AGCG-G-GG 421 -GAC-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------A-A UA-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AA-GU----N UU-UGAAA-- ---GCACC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GGUG--C- A--CUA---- 661 ----AGAG-- AUG---G-|A CCCGC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UA-GU-( GU-AAU-GG) -A-CNACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-NG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGU-CA --GUG-AGA( G----UGGAA -----A---) GUUC-AC-UG 1081 ---------- -------A-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-AU-AAG|U CUG---AUGU A-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UGU- 1321 --GCA-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-NA CUGACA-CUN AG-G------ -------CU- C-GNAA-GC- GU-GGG-UA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------N|G -UU-GU-UU- -GG-GCU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------GCC -CNNAG-UGA 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NN-UUG ACA-UA|--- ---------C ---CAGUG-- -CU----NUU 1981 -CUU-A--(- GAGA-)-UAA -G-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----N--C| ACU-GG-AUN |---C|N--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCU-G(G 2881 -UGA)CAGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UNCAAC-U- N)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AU-ACCC -AAA-G-CCG 3121 G-UGA-G-CU -NA-CC---- ---------- ---------- -----(---- -AUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU N-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.raffin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus raffinolactis. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus raffinolactis. ORGANISM Lactococcus raffinolactis. REFERENCE 1 AUTHORS Collins,M.D., Ash,C., Farrow,J.A., Wallbanks,S. and Williams ,A.M. TITLE 16S Ribosomal ribonucleic acid sequence analyses of lactococci and related taxa. Description of Vagococcus fluvialis gen. nov., sp. nov. JOURNAL J. Appl. Bacteriol. 67, 453-460 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X54261 NCDO 617 = DSM 20443 (T) = ATCC 43920 BASE COUNT 371 a 316 c 426 g 319 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~.....AAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UGC-CU--N AUAC-AUGCA A-GUU-GAAC 121 G--C--UN-G AU---UUCAC C--------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-AG (--CU----- ---------- ---------- 241 --------NG -)CU-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ACCGAA--A- AUC|--G--- AGUN-GCGA- 361 -A-CG-GG-U GAGU---NAC -GC-GUGGG- UAA--CCU-G C-CUNU---C -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-U--U-G- ---GAU-(-- --------GC 541 AU-------- -)-AUU---- CG-AC----A UU-UGAAA-- ---GUACC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GGUN--C- A--CUN---- 661 ----AGAG-- AUG---G-|A CCCGC----- -GU|----GG U--NUGN-G- CUN-G---UG 721 GG-UA-GU-( GU-NAU-GG) -A-CUACC-A A|-GGC-GA- UGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UN(--UU-CG --)GA-UCGU AAA--ACUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGU-UG --CAU-AGA( G----UGGAA -----A---) AUUA-UG-CA 1081 ---------- -------A-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-N-C-GUAG |-GUCC-C-- 1201 NAG-CGUNGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 N-AU-AAG|U CUG---AUGU N-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UGU- 1321 --GCA-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-CA CUGACA-CUG AG-G------ -------CU- N-GNAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------N|G -UU-GU-UU- -GG-GCU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------GCC -CUNAG-UGA 1741 CG--CA---- --GC-(NAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UN|--- ---------C ---UCGUG-- -CU----AUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| ACG-GG-AUA |---C|A--G 2161 GU-GG-AGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 NG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GGC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AU-ACCC -AAA-G-CCG 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-AGGU.... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.2 STC.PYOGENES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.2 STC.PYOGENES_SUBGROUP. ORGANISM 2.16.8.19.2 STC.PYOGENES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Lcc.piscum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactococcus piscium str. fish isolate HR1A-68. ACCESSION No information KEYWORDS No information. SOURCE Lactococcus piscium str. fish isolate HR1A-68. ORGANISM Lactococcus piscium. REFERENCE 1 AUTHORS Williams,A.M., Fryer,J.L. and Collins,M.D. TITLE Lactococcus piscium sp. nov. a new Lactococcus species from salmonid fish JOURNAL FEMS Microbiol. Lett. 68, 109-114 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53905 isolate_name= fish isolate HR1A-68 BASE COUNT 393 a 300 c 399 g 324 t 2960 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ...UUAAAUG AGAGUU(U-N A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNGC-GGC-G -UNC-CU--A AUAC-AUGCA A-GUU-GAAC 121 G--------- -----AUNA- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUUCUNG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-UCAGA AN-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GAAG---- ---|------ AGUA-GCGA- 361 -A-CG-GG-U GAGU---NAC -GC-GUGGG- UAA--CCU-N C-CUCU---U -AGCG-G-GG 421 -GAC-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UU-C--U-N- ---AAN-(-- --------AC 541 AU-------- -)-GUN---- AA-GA----A UU-UGAAA-- ---GUACC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --NGUN--C- A--CUA---- 661 ----GGAG-- AUG---G-|N CCCNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 NG-UA-GU-( GU-AAU-NN) -A-CUACC-A A|-GGC-GA- UGA------- -----UN-CA 781 U-NG-C-CG| -A-CCUN-(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--ACUC| UNUU-GU-UA 1021 --GA-GAA-- GA-ACGU-UG --UGU-AGA( G----UGGAA -----A---) AUUA-CA-CA 1081 ---------- -------A-G U-GA-CGGU- A-UCU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GU -G|-GU-UU- 1261 A-AU-AAG|U CUN---AUGU N-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UN-G-UGU- 1321 --GCA-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-UA-GAGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 ACU--GU-AA CUNACA-CUG AG-G------ -------CU- N-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA G--UN-CU-- -------A|G -UU-NU-UNN -NG-GCU--- ---------- 1681 -(-AU-CC)- ---------- ---------- -A-------- -------GCC -NNNAG-UGA 1741 CG--GA---- --GC-(AAA- ---C)G-CA- UUAA-GCACU N|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UN-UUG ACA-UA|--- ---------C ---CAGUG-- -CU----AUU 1981 -CUU-A--(- GAGA-)-UAA -G-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| ACU-GG-AUA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--NUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCU-A(G 2881 -UGA)UAGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AU-ACCC -AAA-G-CCG 3121 G-UNA-G-CU -NA-CC---- ---------- ---------- -----(---- -UNUUN---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CC-GU-CU A-AGGU-AGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.equi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus equi. ORGANISM Streptococcus equi. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58314 NCDO 2493 (T) = DSM 20561 (T) = NCTC 9682 = ATCC 33398 BASE COUNT 333 a 282 c 381 g 280 t 3100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U NAGU---NAC -GC-GUAGG- UAA--CCU-N G-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-NAA---- ---------- -------A-G UG-G--U-U- ---NAC-(-- --------CC 541 AU-------- -)-GUU---- AA-CC----A UU-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---AACA--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-NAA-GG) -C-CUACC-A A|-GGC-GA- C......... .......... 781 .........| ........(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-UA 1021 --GA-GAA-- GA-ACAG-UG --AUG-GGA( G----UGGAA -----A---) GUCC-AU-CA 1081 ---------- -------U-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUNNU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUN---AAGU U-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAU- 1321 --GCU-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- N-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AGAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-CUNA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -NUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCNCU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-NAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -CUU-A--(- GAGA-)-UAA -G-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUU-GG-AGA |---C|A--G 2161 GU-NG-UGCA UN|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.equi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus equi. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus equi. ORGANISM Streptococcus equi. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02914|g455057 NCTC 9682 = DSM 20561 (T) = ATCC 33398 = NCDO 2493 (T) BASE COUNT 100 a 97 c 113 g 82 t 3984 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUUAA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AUGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.canis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus canis.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus canis. ORGANISM Streptococcus canis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59061 BASE COUNT 329 a 296 c 395 g 280 t 3076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-N C-CUNA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-NAA---- ---------- -------A-G UG-C--U-N- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AA-GA----A CU-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --NCUC--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-NAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-N 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-UA --AUG-GGA( G----UGGAA -----A---) ACCC-AU-UA 1081 ---------- -------U-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AAGU U-NAA-GG-C AU-UGG-C(- UC-A)A-CCA -AU-G-UAU- 1321 --GCU-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-NN(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CN- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -NGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-NCA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pyogen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pyogenes.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pyogenes. ORGANISM Streptococcus pyogenes. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59029 BASE COUNT 335 a 284 c 394 g 265 t 3098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-G C-CUNA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-G AG-A--C-U- ---AAC-(-- --------GC 541 AU-------- -)-GUN---- AG-UN----A UU-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUN--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCNAU-- GG-GG-(GNN A)-CCC-NNA CCGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUGA-UG --GUG-GGA( G----UGGAA -----A---) AUCC-AC-CA 1081 ---------- -------A-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUNUA -UU-GGGC|G NNNA-GCGA- GCG-CAG-GC -G|-GU-NN- 1261 U-UU-AAG|U CUN---AAGU U-AAA-GG-C AU-UGG-C(- UN-A)A-CCA -AU-G-UAC- 1321 --GCU-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUNUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- N-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UNU-A--(- GAGA-)-UAG -A-GUNN--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----N--C| AUC-GG-UNA |---C|A--G 2161 GU-NG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UG -A-AAUC-AU GAU-G-CC-C CUNAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUA-NAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pyoge2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pyogenes. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pyogenes. ORGANISM Streptococcus pyogenes. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02921|g455064 BASE COUNT 98 a 97 c 110 g 82 t 3989 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAU-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-N G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.spG 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sp. str. 4286. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sp. str. 4286. ORGANISM Streptococcus sp. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02915|g455058 legacy_attribute= biovar:group G isolate_name= 4286 BASE COUNT 98 a 97 c 111 g 83 t 3987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CN-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAU-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-N G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.parauber 4376 bp RNA RNA 10-APR-1997 DEFINITION Streptococcus parauberis.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION X89967 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Streptococcus parauberis. ORGANISM Streptococcus parauberis. REFERENCE 1 (bases 1 to 1427) AUTHORS Domenech,A., Fernandez-Garayzabal,J.F., Pascual,C., Garcia,J .A., Cutuli,M.T., Moreno,M.A., Collins,M.D. and Dominguez,L. TITLE Streptococcosis in cultured turbot (Scophthalmus maximus) associated with Streptococcus parauberis JOURNAL J. Fish Dis. 19, 33-38 (1996) STANDARD No information REFERENCE 2 (bases 1 to 1427) AUTHORS Pascual,C. TITLE Direct Submission JOURNAL Submitted (26-JUL-1995) C. Pascual, AFRC Institute of Food Research, Earley Gate, Whiteknights Road, Reading, RG6 2EF, UK STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X89967 BASE COUNT 372 a 323 c 424 g 305 t 2952 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~C-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GACUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUAGU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --AGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- -------A-A UU-A--A-G- ---UAC-(-- --------UC 541 AU-------- -)-GUA---- CU-AA----A UU-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCN A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-UA --AUG-GGA( G----UGGAA -----A---) AUCC-AU-UA 1081 ---------- -------C-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCU-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 U-UU-AAG|U CUG---AAGU U-AAA-GG-C CG-UGG-C(- UC-A)A-CCA -UG-G-UUC- 1321 --GCU-UUGG A-AAC-UGGA U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-NUG- UA-AC-ACCC -GAN-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAAUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS S.macedoni 4376 bp RNA RNA 17-JUL-1997 DEFINITION Streptococcus macedonicus.; 16S ribosomal RNA; 16S rRNA gene. ACCESSION Z94012 KEYWORDS 16S ribosomal RNA; 16S rRNA gene. SOURCE Streptococcus macedonicus. ORGANISM Streptococcus macedonicus. REFERENCE 1 (bases 1 to 1542) AUTHORS Snaidr,J., Amann,R., Huber,I., Ludwig,W. and Schleifer,K.H. TITLE in activated sludge Phylogenetic analysis and in situ identification of bacteria JOURNAL Appl. Environ. Microbiol. 63 (7), 2884-2896 (1997) STANDARD No information REFERENCE 2 (bases 1 to 1542) AUTHORS Ludwig,W. TITLE Direct Submission JOURNAL Submitted (15-APR-1997) Ludwig W., Lehrstuhl fuer Mikrobiologie, Technische Universitae Muenchen, Muenchen, Germany STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z94012 BASE COUNT 400 a 335 c 464 g 339 t 2838 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GACUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGAGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-G UG-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AG----A CU-UAAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UU-A)A-CCA -UU-G-UUC- 1321 --GCU-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----AUU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AANUC- GUAA-CAAGG UANCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.uberis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus uberis.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus uberis. ORGANISM Streptococcus uberis. REFERENCE 1 AUTHORS Brown,D.R. and Brown,M.B. TITLE aureus, Streptococcus agalactiae, Streptococcus dysgalactiae, and Streptococcus uberis 16S rRNA gene nucleotide sequences of the bovine mastitis bacterial pathogens Corynebacterium bovis, Staphylococcus JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U41048|g1127831 BASE COUNT 381 a 328 c 445 g 314 t 2908 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGNC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAG- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GACUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUGGU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UAAG---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- -------A-A UA-G--G-G- ---UAC-(-- --------AC 541 AU-------- -)-GUA---- CC-CU----A UU-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-UA --AUG-GGA( G----UGGAA -----A---) AUCC-AU-UA 1081 ---------- -------C-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UU-A)A-CCA -UA-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.dysga2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus dysgalactiae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus dysgalactiae. ORGANISM Streptococcus dysgalactiae. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02912|g455055 BASE COUNT 100 a 97 c 111 g 82 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CN-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UAUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---ANGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.porcin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus porcinus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus porcinus. ORGANISM Streptococcus porcinus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58315 NCDO 600 (T) = NCTC 10999 = ATCC 43138 BASE COUNT 329 a 281 c 383 g 263 t 3120 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUNA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-GAA---- ---------- -------A-G UA-G--A-A- ---GAC-(-- --------AC 541 AU-------- -)-GUC---- AU-CU----N CU-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCUN--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUAA-G- CUN-G---UU 721 GG-UN-AG-( GU-NAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-GG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUNUN N-GGCAAU-- GG-GG-(GAN A)-CCC-NNA CCGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-UN --AUG-GGA( G----UGGAA -----A---) AUCC-AU-NA 1081 ---------- -------C-G U-NA-CGGU- N-ACU-N-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUNC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUNA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UN-AAG|U CUN---AAGU U-AAA-GG-C UN-UGG-C(- UN-A)A-CCA -UN-G-UNC- 1321 --GCU-UUGG A-AAC-UGUC N-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- N-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UN-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------U ---UUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-AUNU--- ---------- ----C----- --(NN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGG-AG-AGA |---C|A--G 2161 GU-NG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-N-CC-C CUUAU-N-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUNGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUNA-U CUCUU-NAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- N)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.criae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus criae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus criae. ORGANISM Streptococcus criae. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58316 BASE COUNT 330 a 294 c 395 g 266 t 3091 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-GAC---- ---------- -------N-C UA-G--A-G- ---UAC-(-- --------AC 541 AU-------- -)-GUA---- CU-NA----A GU-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -NCUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GGA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGG-UA --AUG-GGA( G----UGGAA -----A---) AUCC-AU-UA 1081 ---------- -------C-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCU-C-- 1201 GAG-CGUUGU CC-GGAUNNA -UU-GGGC|G UNAA-GCGA- GCG-CNG-GC -G|-GU-UC- 1261 U-AU-AAG|U CUG---AAGU A-AAA-GG-C NG-UGG-C(- UC-A)A-CCA -UN-G-UAU- 1321 --GCU-UUGG A-AAC-UGUA A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------C ---CUNUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GUNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UNG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-CU-N |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---NA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CN-C GUG--CUACA AUGGU-U-GG -UA--CNACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -NGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.agalac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus agalactiae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus agalactiae. ORGANISM Streptococcus agalactiae. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59032 NCDO 1348 (T) = DSM 2134 = ATCC 13813 = NCTC 8181 BASE COUNT 341 a 295 c 393 g 283 t 3064 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-N C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-NAG---- ---------- -------A-G UA-N--U-U- ---AAC-(-- --------NC 541 AU-------- -)-GUN---- AG-UN----N UU-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUN--C- A--CUG---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GGA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-ACGU-UG --GUA-GGA( G----UGGAA -----A---) AUCU-AC-CA 1081 ---------- -------A-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UU-G-UAC- 1321 --GCU-UUGG A-AAC-UGGA G-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -CCU-A--(- GAGA-)-UAG -G-CUUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.agala2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus agalactiae.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus agalactiae. ORGANISM Streptococcus agalactiae. REFERENCE 1 AUTHORS Raadstroem,P., Backman,A., Qian,N., Kragsbjerg,P., Paahlson ,C. and Olcen,P. TITLE Simultaneous detection of Neisseria, Haemophilys and assay for simultaneous detection of Neisseria meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22808 geog_source= Lund University Hospital biol_source= cerebrospinal fluid BASE COUNT 243 a 224 c 302 g 218 t 3389 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UU-A)A-CCA -UU-G-UAC- 1321 --GCU-UUGG A-AAC-UGGA G-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UUCUG-- -AC----CGG 1981 -CCU-A--(- GAGA-)-UAG -G-CUUU--- C--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----G--C| AGA-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.suis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus suis.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus suis. ORGANISM Streptococcus suis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59031 BASE COUNT 331 a 298 c 388 g 270 t 3089 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-GAC---- ---------- -------A-A UN-G--A-G- ---GAC-(-- --------NC 541 AU-------- -)-GUN---- UN-UC----A UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----UGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GGA A)-GUC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --GA-GAA-- GA-AUGA-UG --GUG-GGA( G----UGGAA -----A---) AUCC-AC-CA 1081 ---------- -------U-G U-GA-CGGU- A-ACU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUNNA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UC- 1261 U-UU-AAG|U CUN---AAGU U-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -CU-N-UAC- 1321 --GCU-UUGG A-AAC-UGGA G-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------C ---UCCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -A-CUNU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGG-AG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUNGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.agala3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus agalactiae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus agalactiae. ORGANISM Streptococcus agalactiae. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02908|g455051 ATCC 13813 = DSM 2134 = NCTC 8181 = NCDO 1348 (T) BASE COUNT 98 a 98 c 107 g 82 t 3991 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 ....UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGS AUA-GA-UG- AUU-GGGG-U 3301 G---ACGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.hyoint 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus hyointestinalis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus hyointestinalis. ORGANISM Streptococcus hyointestinalis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58313 DSM 20770 (T) = ATCC 49169 BASE COUNT 297 a 276 c 375 g 267 t 3161 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUGA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAG---- ---------- -------A-G GU-A--A-U- ---NAC-(-- --------AC 541 AU-------- -)-GUU---- NU-UN----G UU-UAAAA-- ---GGGGN-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----UCAG-- AUG---G-|A CCUNC----- -GU|----NG U--NUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAN-NG) -C-NNACN-N N|-GGC-NN- NGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-N-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C NNG)--GCCN -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUN| UGUU-GU-CA 1021 --GA-GNN-- GA-ACGG-NN --NUG-GGA( G----NGGAA -----A---) AUCC-AU-GU 1081 ---------- -------C-G U-GA-CGGN- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 C-AU-AAG|U CUN---AAGU U-NAA-GG-C NG-UGG-C(- UN-A)A-CCA -UU-G-UAC- 1321 --GCU-UUGG A-AAC-UGUG A-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UNGAGG- AACA-CCGG- 1441 -U-G-NN(-N NN-N)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGNNUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC N-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGN-N-NN -UA--CAACG AGU-N-G-C. ........(. 2881 ....)..... .......... .......... .......... ........C- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-NNN- -UAGUA-AUC 3001 GN-GGA-(UC -AGC-AC)-G CNG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 NCACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.3 STC.SALIVARIUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.3 STC.SALIVARIUS_SUBGROUP. ORGANISM 2.16.8.19.3 STC.SALIVARIUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.miller 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus milleri str. SJMC. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus milleri str. SJMC. ORGANISM Streptococcus milleri. REFERENCE 1 AUTHORS Bergman,S., Selig,M., Collins,M.D., Farrow,J.A., Baron,E.J., Dickersin,G.R. and Ruoff,K.L. TITLE "Streptococcus milleri" strains displaying a gliding type of motility JOURNAL Int. J. Syst. Bacteriol. 45, 235-239 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81023 isolate_name= SJMC BASE COUNT 375 a 317 c 447 g 311 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ....CGU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CAUAGA---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-A C-CUAU---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-U--G-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- G--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-GC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AA-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAGUG-- -AC----UGC 1981 -CCU-A--(- GAGA-)-UAG -G-GUUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| ACU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGUGGGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUCC GUAAACAAGG UAG---GCCG U(U....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.69130 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sp. str. 69130. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sp. str. 69130. ORGANISM Streptococcus sp. REFERENCE 1 AUTHORS Bergman,S., Selig,M., Collins,M.D., Farrow,J.A., Baron,E.J., Dickersin,G.R. and Ruoff,K.L. TITLE "Streptococcus milleri" strains displaying a gliding type of motility JOURNAL Int. J. Syst. Bacteriol. 45, 235-239 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78825 geog_source= Mass. Gen. Hosp., USA biol_source= urine sample isolate_name= 69130 BASE COUNT 358 a 304 c 431 g 297 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-A C-CUNN---U -AGNG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-N--G-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- G--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-GC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AA-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAGUG-- -AC----UGC 1981 -CCU-A--(- GAGA-)-UAG -G-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| ACU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-AGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.spMGH 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sp. str. MGH. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sp. str. MGH. ORGANISM Streptococcus sp. REFERENCE 1 AUTHORS Bergman,S., Selig,M., Collins,M.D., Farrow,J.A., Baron,E.J., Dickersin,G.R. and Ruoff,K.L. TITLE "Streptococcus milleri" strains displaying a gliding type of motility JOURNAL Int. J. Syst. Bacteriol. 45, 235-239 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X78826 biol_source= source unknown geog_source= Mass. Gen. Hosp., USA isolate_name= MGH BASE COUNT 360 a 303 c 429 g 297 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-A C-CUAU---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-U--G-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- G--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -NGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-GC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AA-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCNN- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CAGUG-- -AC----UGC 1981 -CCU-A--(- GAGA-)-UAG -G-GAUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| ACU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-AGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.mille2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus milleri str. 4221. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus milleri str. 4221. ORGANISM Streptococcus milleri. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02917|g455060 isolate_name= 4221 BASE COUNT 101 a 102 c 115 g 84 t 3974 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .........C AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AUGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02909|g455052 ATCC 12395 = NCTC 10713 = DSM 20563 (T) = ATCC 33397 BASE COUNT 99 a 98 c 114 g 84 t 3981 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-A |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-U G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AUGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angino 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58309 NCTC 10713 = DSM 20563 (T) = ATCC 12395 = ATCC 33397 BASE COUNT 339 a 287 c 398 g 287 t 3065 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUNU---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-U--G-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--N- G--CUA---- 661 ----GUAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UA 721 GG-UA-GG-( GU-NAU-GG) -C-CUACC-U A|-GGN-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-AC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AA-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -UCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Jacobs,J.A., Schot,C.S., Bunschoten,A.E. and Schouls,L.M. TITLE Rapid species identification of 'Streptococcus milleri' strains by line blot hybridization: Identification of a distinct 16S rRNA population closely related to Streptococcus constellatus JOURNAL J. Clin. Microbiol. 34, 1717-1721 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69038 ATCC 33397 = NCTC 10713 = DSM 20563 (T) = ATCC 12395 BASE COUNT 144 a 105 c 154 g 109 t 3864 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... AAGUA-GGAC 121 G--CA----C AG---UUUAU ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CAUAGA---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUAU---U -AGAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-U--G-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- G--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-AC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU C......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.mutan2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus mutans. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus mutans. ORGANISM Streptococcus mutans. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02919|g455062 ATCC 25175 = IFO 13955 = NCTC 10449 (T) BASE COUNT 94 a 98 c 116 g 82 t 3986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |.....GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGU-U-G-C- GA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GNA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGC-C-N G-CC-GC-CU A-AGGU-GGG AUG-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.mutans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus mutans. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus mutans. ORGANISM Streptococcus mutans. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58303 NCTC 10449 (T) = ATCC 25175 = IFO 13955 BASE COUNT 340 a 290 c 394 g 283 t 3069 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUAU---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAU---- ---------- -------A-U UN-A--U-U- ---AUU-(-- --------GC 541 AU-------- -)-GAU---- NA-UN----N AU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAGC--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----GUAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAG-AG) -C-UUACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GGGA- GCG-CAG-GC -G|-GU-CA- 1261 G-GA-AAG|U CUG---GAGU A-AAA-GG-C UA-UGG-C(- UC-A)A-CCA -UA-G-UGU- 1321 --GCU-CUGG A-AAC-UGUC U-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-CA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CNGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -CUU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-AGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGU-U-G-C- GA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.macaca 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus macacae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus macacae. ORGANISM Streptococcus macacae. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58302 NCTC 11558 (T) = ATCC 35911 BASE COUNT 338 a 287 c 388 g 273 t 3090 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUCU---U -AGAG-G-GG 421 -GAU-AA-GG A--------- ------UU-- G(-GAAA-)C -GAUA-G--G UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-C--U-C- ---UAA-(-- --------GC 541 CU-------- -)-UUA---- GA-GG----G AU-UGAAA-- ---GGUAC-- ---------- 601 --(------- ---AACA--- ---)------ ---------| --GUAU--C- G--CUA---- 661 ----AGAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AGA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-NN-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GC-AAGU-UG --GAG-AGA( G----UGGAA -----A---) GUUC-UC-CA 1081 ---------- -------A-U U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GGGA- GCG-CAG-GC -G|-GU-CU- 1261 G-GA-AAG|U CAG---UAGU U-AAA-AG-C AU-UGG-C(- UN-A)A-CCA -AU-G-UCA- 1321 --GCU-AUNG A-AAC-UGUC A-GACUU-GA GUA-----CA G-AA-GGGNA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-AA-GG)- ---------- ---------- -G-------- -------G-- -CUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CNN- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGGUG-- -CC----NUU 1981 -UCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| ACC-GG-AGA |---C|A--G 2161 GU-NG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-N 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UNCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.sobrin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sobrinus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sobrinus. ORGANISM Streptococcus sobrinus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58307 DSM 20742 (T) = ATCC 33478 BASE COUNT 332 a 301 c 393 g 280 t 3070 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGA---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-G GA-G--U-U- ---AAC-(-- --------UC 541 AU-------- -)-GUU---- AA-CU----G UU-UAAAA-- ---GAAGC-- ---------- 601 --(------- ---CAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----UCAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-U A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GCA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAN--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-NG 1021 --GG-GNA-- GA-ACGU-GU --GUA-AGA( G----UGGAA -----A---) GCUU-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CCC-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUN -NU-GGGC|G NNAA-GGGA- GCG-CAG-GC -G|-GU-NU- 1261 A-GU-AAG|U CUG---AAGU U-AAA-GG-C AU-UGG-C(- UC-A)A-CCA -AU-G-UAU- 1321 --GCU-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-AA-GGGGN GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-CA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 NG--NC---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGNGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCNN-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-AGA |---C|A--G 2161 CU-CG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-N CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC -AA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.downei 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus downei. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus downei. ORGANISM Streptococcus downei. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58306 NCTC 11391 (T) = ATCC 33748 BASE COUNT 316 a 272 c 367 g 260 t 3161 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUGA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-GAG---- ---------- -------A-G UG-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AG----A CU-UNAAA-- ---GAGAC-- ---------- 601 --(------- ---CAUU--- ---)------ ---------| --GUAU--C- A--CUA---- 661 ----UCAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UA-GG-( GU-AGC-GG) -C-CUACC-A A|-GGC-AC- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AG 1021 --CG-GAA-- GA-ACGN-GU --GUA-AGA( G----UGGAA -----A---) GUUU-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CGC-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CUG---AAGU U-AAA-GG-C AU-UGG-C(- UC-A)A-CCA -AU-G-UAU- 1321 --GCU-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-CA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 CG--CA---- ---N-(UAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- N-GGGAGUAG 1801 CAC-C---(G CAA)---G-G UU-GAAACUN -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--C.... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... G-)------- UA-------- -----A--C| AUC-GG-AGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.cricet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus cricetus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus cricetus. ORGANISM Streptococcus cricetus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58305 NCDO 2720 (T) = ATCC 19642 BASE COUNT 332 a 298 c 385 g 278 t 3083 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UNA--CCU-N C-CUNG---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAU---- ---------- -------A-G UG-A--U-C- ---AAC-(-- --------UC 541 AU-------- -)-GUC---- AA-UN----A CU-UGAAA-- ---GGUGC-- ---------- 601 --(------- ---AAUG--- ---)------ ---------| --GCAC--C- A--CUA---- 661 ----NGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UA 721 GG-UA-GG-( GU-AAC-GG) -C-UUACC-U A|-GGC-UU- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNA A)-CCC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-UG --AGU-AGA( G----UGGAA -----A---) GUNA-CU-NA 1081 ---------- -------A-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-GU-AAG|U CUN---AAGU U-AAA-GG-C AU-UGG-C(- UC-A)A-CCA -AU-N-UNU- 1321 --GCU-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUNACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UN-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----AUC 1981 -CCU-A--(- GAGA-)-UAG -G-GAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 CU-CG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -AA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.rattus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus rattus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus rattus. ORGANISM Streptococcus rattus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58304 NCDO 2723 (T) = ATCC 19645 BASE COUNT 332 a 299 c 403 g 274 t 3068 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUAU---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAG---- ---------- -------A-G AG-U--U-N- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AC----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAGA--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----GUAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GN-N 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(NNN A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-CA 1021 --GA-GAC-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-G-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-NU- 1261 U-GU-AAG|U CUG---AAGU C-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UU-G-UGU- 1321 --GCU-UUGG A-AAC-UGCA G-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-CUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG NNGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U C-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-NGNA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG AGU-C-G-C- GA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUN----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.alacto 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus alactolyticus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus alactolyticus. ORGANISM Streptococcus alactolyticus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58319 NCDO 1091 (T) = DSM 20728 = ATCC 43077 BASE COUNT 339 a 290 c 390 g 276 t 3081 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUUG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G CU-U--U-U- ---GAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AA----G CU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CGAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GAA A)-CCN-NNA CCGA|-GCAA CGNN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-GA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUNNA -UU-GGGC|G NNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UN-N-UUC- 1321 --GCU-UUGG A-AAC-UGUU A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-NAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CAGUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GNNN--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| ACU-GG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACN-CN-C GUG--CUACA AUGGU-U-GG -UA--CAAUG AGU-C-G-C- AA-GUC-G(G 2881 -UGA)UGGU- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UNCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.bovis1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus bovis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus bovis. ORGANISM Streptococcus bovis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58317 NCDO 597 = ATCC 33317 = DSM 20480 (T) BASE COUNT 324 a 298 c 389 g 283 t 3082 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-G C-CUAC---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G CA-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----GUAG-- AUG---G-|N CCUNC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-C-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UUC- 1321 --GCU-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-AA-GGGGN GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GN- 1561 GC-NAA-CA- -GG(AUUN-G AUNC)-CCU- ----GGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGN -CUUAG-UGC 1741 CG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGNGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -N-C-CN--G 1861 C-A--CN-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGCAN-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC NACCC-CU-N |-UU--GUU- 2281 AG--UUNC-C AU-CA----- ---------- ---------- ---U(---UN ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-AUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus bovis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus bovis. ORGANISM Streptococcus bovis. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58835 ATCC 33317 = DSM 20480 (T) = NCDO 597 BASE COUNT 393 a 331 c 448 g 332 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~ACUUAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--CU----- ------GAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GACUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAAGU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- ---|-AG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUAC---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-G CA-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----GUAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUG---AAGU U-AAA-GG-C AG-UGG-C(- UU-A)A-CCA -UU-G-UUC- 1321 --GCU-UUGG A-AAC-UGUU A-GACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CNU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CA--GA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----AUU 1981 -CCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-U-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.equins 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus equinus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus equinus. ORGANISM Streptococcus equinus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58318 NCDO 1037 (T) = DSM 20558 = ATCC 9812 BASE COUNT 342 a 292 c 388 g 278 t 3076 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-G C-CUAC---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------A-G CA-U--U-U- ---AAC-(-- --------AC 541 AU-------- -)-GUU---- AG-AU----G CU-UGAAA-- ---GAAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----GUAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GAA A)-CCN-NNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-ACU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUN---AAGU U-AAA-GG-C AG-UGG-C(- UN-A)A-CCA -UN-N-UUC- 1321 --GCU-UUGG A-AAC-UGUU A-GACUN-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -UCU-A--(- GAGA-)-UAG -G-AAGU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-NG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-C-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCAAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.vestib 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus vestibularis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus vestibularis. ORGANISM Streptococcus vestibularis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58321 NCTC 12166 (T) = ATCC 49124 BASE COUNT 324 a 293 c 383 g 284 t 3092 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UNA--CCU-N C-CUAG---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------A-A UA-G--G-U- ---NAC-(-- --------AC 541 AU-------- -)-GUN---- AU-NN----N UU-UGAAA-- ---GGGGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----CNAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCNAU-- GG-GG-(GNA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUU-CA-CA 1081 ---------- -------C-U U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUN---AAGU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCNCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-NG-NGCA UN|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-ANC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCU--AAAG -CC-A-AUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-NUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.saliv2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus salivarius. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus salivarius. ORGANISM Streptococcus salivarius. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58320 NCDO 1779 = NCTC 8618 = DSM 20560 = ATCC 7073 BASE COUNT 331 a 294 c 387 g 289 t 3075 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUUG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-G--A-U- ---GAC-(-- --------AC 541 AU-------- -)-GUC---- AU-UU----A UU-UGAAA-- ---GGGGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----CAAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U N|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNN N)-CCU-N-A CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G NNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUN-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UNG -AU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -UUCAG-UGC 1741 CG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-NAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----NUU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-NG-NGCA UN|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUNA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.saliva 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus salivarius str. C699 ATCC 13419. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus salivarius str. C699 ATCC 13419. ORGANISM Streptococcus salivarius. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Kandler,O. TITLE Phylogenetic analysis of the lactobacilli based upon 16S rRNA JOURNAL Unpublished (1990) STANDARD No information COMMENTS Organism information Culture collection: ATCC 13419 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M58839 isolate_name= C699 BASE COUNT 391 a 337 c 461 g 336 t 2851 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUUG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-G--A-U- ---GAC-(-- --------CC 541 AU-------- -)-GUC---- AU-UU----A UU-UGAAA-- ---GGGGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----CAAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----AUU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- ANN-GGGG.. 3301 .......... GUAA-CAAG. ......GUAU C(GGA-A)G. .......... GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.saliv5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus salivarius. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus salivarius. ORGANISM Streptococcus salivarius. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02923|g455066 ATCC 7073 = NCTC 8618 = DSM 20560 = NCDO 1779 BASE COUNT 80 a 80 c 87 g 71 t 4058 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .........A UG-ACG--UC -A-ANUC-AU CAU-G-CC-C -UUAU-G-AC -CU---GGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAG....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.therm3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus thermophilus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus thermophilus. ORGANISM Streptococcus thermophilus. REFERENCE 1 AUTHORS ,D., Ehrmann,M., Hertel,C., Jilg,S., Tatzel,R., Zitzelsberger,H., Liebl,S., Hochberger,M., Shah,J., Lane,D. and Wallnoef,P.R. Ludwig,W., Kirchhof,G., Klugbauer,N., Weizenegger,M., Betzl TITLE Bacteria with a low DNA G+C content Complete 23S ribosomal RNA sequences of Gram-positive JOURNAL Syst. Appl. Microbiol. 15, 487-501 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68418 Former RDP Sids: Stc.saliv3 DSM 20617 = ATCC 19258 = NCIMB 8510 = NCDO 573 (T) NB: former name Streptococcus salivarius subsp. thermophilus BASE COUNT 390 a 341 c 469 g 339 t 2837 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GG-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUNG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A UG-G--A-U- ---GAC-(-- --------AC 541 AU-------- -)-GUC---- AU-UU----A UU-UGAAA-- ---GGGGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----CAAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GCA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-CU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGG-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -AU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -UUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G GAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC ACC-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CU----AUU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- GA-GCUAA-U CUCUU-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG ACA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GAUC C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.therm4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus thermophilus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus thermophilus. ORGANISM Streptococcus thermophilus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE comparative analysis of small-subunit rRNA sequences Intrageneric structure of Streptococcus based on JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59028 Former RDP Sids: Stc.thphil Stc.saliv4 NCDO 573 (T) = DSM 20617 = ATCC 19258 = NCIMB 8510 NB: former name Streptococcus thermophilus -> Streptococcus salivarius subsp. thermophilus BASE COUNT 309 a 286 c 381 g 265 t 3135 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUNGG- UNA--CCU-N C-CUNG---U -AGCG-G-GG 421 -GAU-NA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------N-A UG-G--A-U- ---GAC-(-- --------AC 541 AU-------- -)-GUN---- AU-NN----N UU-UGAAA-- ---GGGGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----CNAG-- AUG---G-|A CCUNC----- -GU|----NG U--NUUA-G- CUN-G---UA 721 GG-UG-AG-( GU-NAU-GG) -C-UCACC-U N|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CN| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNA A)-CCN-NNA CCGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-CAA-- GA-ACGG-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-GCU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUNNU CC-GGAUNNA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUN---AAGU N-AAA-GG-C UN-UGG-C(- UN-A)A-CCA -UN-G-UUC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUN-GA GUG-----CA G-AA-GGGNN GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-NA CUGACG-CUG AG-G------ -------CU- N-NAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UNG -AU-NCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -UUCAG-UGC 1741 CG--CA---- --SS-(UNA- ---C)G-CA- UNAA-GCNCN C|C|G-CCU- N-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-NAAACUC -AAA-GGAAU UN-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -NNAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----UNU 1981 -UCU-A--(- GAGA-)-UAG -A-AAGU--- N--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----N--C| AUC-GG-UGA |---C|A--G 2161 GU-NG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---NG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-N- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-NAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACG AGU-U-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- GA-GCUAA-U CUCUU-NAAG -CC-A-AUC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUN-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.4 STC.ANGINOSUS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.4 STC.ANGINOSUS_SUBGROUP. ORGANISM 2.16.8.19.4 STC.ANGINOSUS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus str. SK54 ATCC 27335 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus str. SK54 ATCC 27335 (T). ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Jacobs,J.A., Schot,C.S., Bunschoten,A.E. and Schouls,L.M. TITLE Rapid species identification of 'Streptococcus milleri' strains by line blot hybridization: Identification of a distinct 16S rRNA population closely related to Streptococcus constellatus JOURNAL J. Clin. Microbiol. 34, 1717-1721 (1996) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27335 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69040 ATCC 27335 (T) = NCTC 11324 = VPI 3372A isolate_name= SK54 BASE COUNT 141 a 108 c 154 g 106 t 3867 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... ...UA-GAAC 121 G--CA----C AG---GAUGC ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CGUAUU---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-AC 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU C......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus str. SK54 NCTC 11324. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus str. SK54 NCTC 11324. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11324 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58311 Former RDP Sids: Stc.interm NCTC 11324 = VPI 3372A = ATCC 27335 (T) isolate_name= SK54 NB: former name Streptococcus intermedius BASE COUNT 300 a 287 c 381 g 274 t 3134 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GN-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-NGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAAU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|N CCUNC----- -GU|----UG U--NUUN-N- CUN-G---UA 721 GG-UG-AG-( GU-NAC-GG) -C-NNACC-N A|-GGC-AA- CGA------- -----UN-CN 781 U-NG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ANA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-N 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGN A)-CCC-UGA CCGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GNA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-NA 1021 --AG-GAA-- GA-ACGA-GU --GUG-AGA( A----UGGAA -----A---) GUUC-AU-AC 1081 ---------- -------U-G U-GA-CGGU- N-CUU-N-AC C-AG--AAAG ---------G 1141 -GACGGCU-N ACUAC-GUG( CCA--GCAGC CGCGGUN-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUNN -UU-GGGC|G UNNN-GCGA- GCN-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUN---AAGU U-NNA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGN GAG-U|GGNA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- NN-GGG-GN- 1561 GC-GAA-CA- -GN(AUUN-G AUNC)-CCU- ----GGUN-G UC----CAN- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCC--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 NG--CA---- --GC-(UNA- ---C)G-CA- UUAA-GCANU C|C|G-CCU- N-GGGNGUAC 1801 GAN-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UN-ACGNN-G -N-C-NN--G 1861 N-N--CA-NN NNNNGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UNG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GCUU--- U--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-NG-UGCA UN|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNNU-N-AC -CU--GGGC- 2821 U-NCA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UUGUN----C 3061 ACACCGCCC- GUN-ACA--- --CCA-CGAG A--GU-UUG- UN-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.mille3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus milleri str. 372. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus milleri str. 372. ORGANISM Streptococcus milleri. REFERENCE 1 AUTHORS Jacobs,J.A., Schot,C.S., Bunschoten,A.E. and Schouls,L.M. TITLE Rapid species identification of 'Streptococcus milleri' strains by line blot hybridization: Identification of a distinct 16S rRNA population closely related to Streptococcus constellatus JOURNAL J. Clin. Microbiol. 34, 1717-1721 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69037 isolate_name= 372 BASE COUNT 145 a 107 c 146 g 100 t 3878 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .........A AUAC-AUGCA A-GUA-GAAC 121 G--CA----C AG---GAUGC ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CGUAUU---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAAA--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-CCAA CCCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAAC CGCGGUA..) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus str. SK54 ATCC 27335 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus str. SK54 ATCC 27335 (T). ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27335 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02916|g455059 Former RDP Sids: Stc.inter2 ATCC 27335 (T) = NCTC 11324 = VPI 3372A isolate_name= SK54 NB: former name Streptococcus intermedius BASE COUNT 102 a 104 c 116 g 83 t 3971 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... ...G-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58310 Former RDP Sids: Stc.const2 NB: former name Streptococcus constellatus BASE COUNT 310 a 297 c 393 g 262 t 3114 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-NAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-NGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAGA--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|N CCUNC----- -GU|----NG U--NUUN-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCN-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUNN -UU-GGGC|G NNAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UC-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGN GAG-U|GGAA 1381 UU-CCAUGU- GUN-GCG(-G UGAAA)-UGC -GU-AGAN-N UA-UGGAGG- AACN-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- NN-GGG-GA- 1561 GC-GAA-CA- -GG(AUUN-G AUNC)-CCU- ----NGUN-G UC----CAC- G-CC-GN--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGA -CUNAG-UGC 1741 NG--CA---- --GC-(UNA- ---C)G-CA- UUNA-GCACU C|C|G-CCU- N-GGGAGNNC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -NAA-GGAAU UN-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGCNA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GNNU--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--N| AGA-GG-UGA |---C|N--G 2161 GU-NG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNNA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UN--GUU- 2281 AG--UUNC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UN-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUNNU-G-AC -CU--GGGC- 2821 U-NCA-CA-C GUG--CUACN AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-N-GUC- UCNGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUCCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-N CCG-CGGUN- AAUAC-GUU- CCC-GGG-CC UNGUA----C 3061 ACACCNCCC- GUC-NCA--- --CCA-CGAG A--GU-UNG- UN-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS Former RDP Sids: Stc.conste ATCC 27823 = VPI 3810 NB: former name Streptococcus constellatus BASE COUNT 385 a 327 c 456 g 316 t 2892 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAUAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--CA----C AG---GAUGC ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CGUAUU---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GN-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAGA--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GN|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU G-AAA-GG-C AG-UGG-C(- UC-A)A-CCA -UU-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-NCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CAC 1981 -UCU-A--(- GAGA-)-UAG -A-GNUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--N| AGA-GG-NGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-N-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.angin9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus anginosus. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus anginosus. ORGANISM Streptococcus anginosus. REFERENCE 1 AUTHORS Jacobs,J.A., Schot,C.S., Bunschoten,A.E. and Schouls,L.M. TITLE Rapid species identification of 'Streptococcus milleri' strains by line blot hybridization: Identification of a distinct 16S rRNA population closely related to Streptococcus constellatus JOURNAL J. Clin. Microbiol. 34, 1717-1721 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z69041 Former RDP Sids: Stc.constl ATCC 27823 = VPI 3810 BASE COUNT 144 a 110 c 158 g 105 t 3859 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-AUGCA A-GUA-GAAC 121 G--CA----C AG---GAUGC ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CGUAUU---- CUG|-UGG-- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CA-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- AG-AU----G UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAGA--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-UA 1021 --AG-GAA-- GA-ACGU-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------A-G U-GA-CGGU- A-CUU-A-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU C......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.5 STC.PNEUMONIAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.5 STC.PNEUMONIAE_SUBGROUP. ORGANISM 2.16.8.19.5 STC.PNEUMONIAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.sangu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sanguis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sanguis. ORGANISM Streptococcus sanguis. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02924|g455067 BASE COUNT 100 a 102 c 114 g 82 t 3978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ...CC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.dysgal 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus dysgalactiae.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus dysgalactiae. ORGANISM Streptococcus dysgalactiae. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X59030 BASE COUNT 328 a 296 c 385 g 279 t 3088 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UNA--CCU-N C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAC---- ---------- -------A-G UA-U--U-U- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- AG-AU----C CU-UGAAA-- ---GGAGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCUN--C- A--CUA---- 661 ----UGAG-- AUN---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(NNN A)-CCN-NNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACUG-UG --AGA-AGA( G----UGGAA -----A---) GUUU-CU-CA 1081 ---------- -------C-U U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUG---AAGU A-AAA-GG-C UG-UGG-C(- UN-A)A-CCA -UA-G-UAC- 1321 --GCU-UUGG A-AAC-UGUC A-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- N-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUNG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------C ---CAGUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-AUNU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A--C| ACU-GG-UGA |---C|A--G 2161 GU-GG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-NAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-CGAG A--GU-UNG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.acidom 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus acidominimus.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus acidominimus. ORGANISM Streptococcus acidominimus. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58301 BASE COUNT 331 a 299 c 397 g 272 t 3077 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAU---- ---------- -------A-G UG-U--U-U- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- NA-AC----A UU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCAC--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-N---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGU-UA --GCG-GGA( G----UGGAA -----A---) AUCC-GC-UA 1081 ---------- -------A-G U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CAG---AAGU A-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UAC- 1321 --GCU-UNUG A-AAC-UGUC A-AACUN-GA GUG-----CA G-AA-GGGGG GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUN-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- N-GNAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -NNUAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UNG ACA-UC|--- ---------C ---CUCUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-GNUN--- C--------- ---UN----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------U U-)------- GA-------- -----G--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUN-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-NGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.parasa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus parasanguis str. 85-81. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus parasanguis str. 85-81. ORGANISM Streptococcus parasanguis. REFERENCE 1 AUTHORS Whiley,R.A., Fraser,H.Y., Douglas,C.W.I., Hardie,J.M., Williams,A.M. and Collins,M.D. TITLE Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens JOURNAL FEMS Microbiol. Lett. 68, 115-122 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53652 isolate_name= 85-81 BASE COUNT 365 a 320 c 439 g 310 t 2942 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ....UUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GCUUGG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CCGAG C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUCU---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAA---- ---------- -------A-G UC-G--A-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AU-NN----A UU-UGAAA-- ---GGUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----AGAG-- AUG---G-|A CCUNC----- -GU|----NG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-NNU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNA A)-CCC-UNA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UN(--NU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-ACU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UN-UGG-C(- UN-A)A-CCA -UA-G-UAC- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UGG -GU-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGA -CUCAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|N--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU GAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- GA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC -CAA-G-UCG 3121 G-UGA-G-GU -NA-CC---- ---------- ---------- -----(---- -NUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.gordo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus gordonii str. SK 51 NCTC 3165. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus gordonii str. SK 51 NCTC 3165. ORGANISM Streptococcus gordonii. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Organism information Culture collection: NCTC 3165 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02918|g455061 Former RDP Sids: Stc.mitis2 NCTC 3165 = ATCC 33399 isolate_name= SK 51 NB: former name Streptococcus mitis BASE COUNT 100 a 99 c 110 g 87 t 3980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- UUUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.gordon 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus gordonii str. SK 3 NCTC 7865 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptococcus gordonii str. SK 3 NCTC 7865 (T). ORGANISM Streptococcus gordonii. REFERENCE 1 AUTHORS Kawamura,Y., Hou,X.G., Sultana,F., Miura,H. and Ezaki,T. TITLE Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus JOURNAL Int. J. Syst. Bacteriol. 45, 406-408 (1995) STANDARD No information COMMENTS Organism information Culture collection: NCTC 7865 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38483|g976259 NCTC 7865 (T) = ATCC 10558 isolate_name= SK 3 BASE COUNT 366 a 311 c 421 g 314 t 2964 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--CA----C AG---UUUAU ACC------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- --------AC CAUAGA---- CUG|-UG--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U UA-A--U-U- ---AUU-(-- --------GC 541 AU-------- -)-GAU---- AA-UU----A AU-UGAAA-- ---GGUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAC--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-U A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGG-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UU-A)A-CCA -UA-G-UAC- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA A-GA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -AC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -UUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACN C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CGAUG-- -CC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- U--------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- -----A--C| AUC-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GUC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.oralis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus oralis str. PB 182 NCTC 11427 (T). ACCESSION No information KEYWORDS No information. SOURCE Streptococcus oralis str. PB 182 NCTC 11427 (T). ORGANISM Streptococcus oralis. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Organism information Culture collection: NCTC 11427 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58308 NCTC 11427 (T) = ATCC 35037 isolate_name= PB 182 BASE COUNT 323 a 297 c 391 g 280 t 3085 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---NAC -GC-GUAGG- UAA--CCU-N C-CUNG---U -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAG---- ---------- -------A-G UA-G--A-U- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- AU-UU----A CU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-N NCG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-GGCNAU-- GG-AC-(GGA A)-GUC-UGA CCGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-NA 1021 --GA-GAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- N-UCU-U-AC C-NG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UN-A)A-CCA -UA-G-UAC- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA A-GA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -AC-CCU--- ---------- 1681 -(-NU-CC)- ---------- ---------- -G-------- -------GGG -CNUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GN-------- -----N--C| AGA-GG-UGA |---C|A--G 2161 GU-NG-NGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-NGUAGGC- (UNCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-NNG- UA-NC-ACCC -NN....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.mitis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus mitis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus mitis. ORGANISM Streptococcus mitis. REFERENCE 1 AUTHORS Kawamura,Y., Hou,X.G., Sultana,F., Miura,H. and Ezaki,T. TITLE Determination of 16S rRNA sequences of Streptococcus mitis and Streptococcus gordonii and phylogenetic relationships among members of the genus Streptococcus JOURNAL Int. J. Syst. Bacteriol. 45, 406-408 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D38482|g976258 BASE COUNT 359 a 311 c 429 g 303 t 2974 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUA-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCUCC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-G UA-G--A-U- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- AU-UU----G CU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---AAUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUGC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UA-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGAU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GGA A)-GUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UU-A)A-CCA -UA-G-UAC- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA A-GA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -AC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -UUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCACN C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GU........ .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pneum3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pneumoniae. ORGANISM Streptococcus pneumoniae. REFERENCE 1 AUTHORS Greisen,K., Loeffelholz,M., Purohit,A. and Leong,D. TITLE PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid JOURNAL J. Clin. Microbiol. 32, 335-351 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02920|g455063 BASE COUNT 99 a 97 c 111 g 79 t 3990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pneum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pneumoniae. ORGANISM Streptococcus pneumoniae. REFERENCE 1 AUTHORS Raadstroem,P., Backman,A., Qian,N., Kragsbjerg,P., Paahlson ,C. and Olcen,P. TITLE Detection of bacterial DNA in cerebrospinal fluid by an Streptococcus in Cerebrospinal fluid by multiplex meningitidis, Haemophilus influenzae, and streptococci using a seminested PCR strategy JOURNAL J. Clin. Microbiol. 32, 2738-2744 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z22807 geog_source= Lund University Hospital biol_source= cerebrospinal fluid BASE COUNT 245 a 220 c 302 g 219 t 3390 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ..A-C-GUAG |-GUCC-C-- 1201 GAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UU-A)A-CCA -UA-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA A-GA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -AC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -UUUAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUUU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pneumo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pneumoniae. ORGANISM Streptococcus pneumoniae. REFERENCE 1 AUTHORS Bentley,R.W., Leigh,J.A. and Collins,M.D. TITLE Intrageneric structure of Streptococcus based on comparative analysis of small-subunit rRNA sequences JOURNAL Int. J. Syst. Bacteriol. 41, 487-494 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X58312 NCTC 7465 (T) = ATCC 33400 BASE COUNT 323 a 291 c 397 g 279 t 3086 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUGG---U -AGCG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-G UA-G--A-U- ---GUU-(-- --------GC 541 AU-------- -)-GAC---- AU-UU----G CU-UAAAA-- ---GGUGC-- ---------- 601 --(------- ---ACUU--- ---)------ ---------| --GCAU--C- A--CUA---- 661 ----CCAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UA-CN 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUNA-GA-C NCG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-N 901 GGG-AAUCUU C-GGCAAU-- GG-AC-(GGA A)-GUC-UGA CCGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU NAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- GA-ACGA-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-NA-CGGU- A-UCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUNNA -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-AAA-GG-C UG-UGG-C(- UC-A)A-CCA -UA-G-UAG- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA A-GA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CUN--GU-AA CUGACG-CUG AG-G------ -------CU- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -AC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -UCNAG-UGC 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GCACU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUNAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----GAC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-NGA |---C|A--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UNAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-NU-A |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-AA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACN-CA-C GUG--CUACN AUGGC-U-GG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUAA-U CUCUU-NAAG -CC-A-GUC- UCNGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC -GA....... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.8.J.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.8.19.6 STC.SANGUIS_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.8.19.6 STC.SANGUIS_ISOLATE. ORGANISM 2.16.8.19.6 STC.SANGUIS_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.sangui 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus sanguis. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus sanguis. ORGANISM Streptococcus sanguis. REFERENCE 1 AUTHORS Whiley,R.A., Fraser,H.Y., Douglas,C.W.I., Hardie,J.M., Williams,A.M. and Collins,M.D. TITLE Streptococcus parasanguis sp. nov., an atypical viridans Streptococcus from human clinical specimens JOURNAL FEMS Microbiol. Lett. 68, 115-122 (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X53653 NCTC 7863 = ATCC 15300 BASE COUNT 354 a 321 c 440 g 307 t 2954 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ....UUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUNC-NUGCA A-GUN-GAAC 121 G--C------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGG-AG (--CU----- ---------- ---------- 241 --------NG -)CU-CUUCU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--G--- AGUU-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- UAA--CCU-G C-CUNG---N -AGCG-G-GG 421 -GAU-AA-CU N--------- ------UU-- G(-GAAA-)C -GAUA-G--C UNAUACC-GC 481 AU-AAA---- ---------- -------A-U UG-A--U-U- ---NUU-(-- --------GC 541 AU-------- -)-GAU---- NA-NN----N AU-UGAAA-- ---GAUGC-- ---------- 601 --(------- ---AAUN--- ---)------ ---------| --GCAU--C- A--CUG---- 661 ----CCAG-- AUG---G-|A CCUNC----- -GU|----UG U--AUUA-G- CUN-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-GGCAAU-- GG-GG-(GNA A)-CCC-UNA CCGA|-GCNA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UNUU-GU-AA 1021 --GA-GAA-- GA-ACGG-GU --GUG-AGA( G----UGGAA -----A---) GUUC-AC-AC 1081 ---------- -------U-G U-GA-CGGU- A-NCU-U-AC C-AG--AAAG ---------G 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUCC-C-- 1201 NAG-CGUUGU CC-GGAUUUN -UU-GGGC|G UNAA-GCGA- GCG-CAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUG---AAGU U-NAA-GG-C UG-UGG-C(- UN-A)A-CCA -UA-G-UAU- 1321 --GCU-UUGG A-AAC-UGUU U-AACUU-GA GUG-----CA G-AA-GGGGA GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-GU--N 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-UAG -GC-CCU--- ---------- 1681 -(-UU-CC)- ---------- ---------- -G-------- -------GGG -CUUAG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GCNCU C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-NGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUNA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGC 1981 -UCU-A--(- GAGA-)-UAG -A-GUNU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AGA-GG-UGA |---C|N--G 2161 GU-GG-NGCA UN|G-UNG-- UCG-UNA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UN--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-A-CCG --GU(-NA-U NA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU NAU-G-CC-C CUUAU-G-AC -CU--NGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-NG -UA--CAACG AGU-C-G-C- AA-GCC-G(G 2881 -UGA)CGGC- ---------- AA-GCUNA-U CUCUG-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUNCA -UGAAGU-CG -GAAU-CGC- -UNGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUN- AAUAC-GUU- CCC-GGG-CN UNGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCN-CGAG A--GU-UUG- UA-AC-ACCC -GAA-G-UCG 3121 G-UGA-G-GU -NA-CC---- ---------- ---------- -----(---- -GUNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG A......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9-MYC 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9 MYCOPLASMA_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9 MYCOPLASMA_AND_RELATIVES. ORGANISM 2.16.9 MYCOPLASMA_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1 ACHOLEPLASMA-ANAEROPLASMA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1 ACHOLEPLASMA-ANAEROPLASMA_GROUP. ORGANISM 2.16.9.1 ACHOLEPLASMA-ANAEROPLASMA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I. ORGANISM 2.16.9.1.1 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_I. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.pota 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27040|g598310 (bases 1 to 317) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 201 a 122 c 169 g 166 t 3718 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .C-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUAC--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-GU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... ..G-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-UA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -GA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUGC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.C1 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33761|g537920 (bases 45 to 1474) BASE COUNT 422 a 250 c 375 g 343 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ..UG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- NAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------CC-- G(-GAAA-)C --GUU----C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUAC--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-GU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCACC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -U|-GU-UA- 1261 G-AU-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UGUC UUGACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA.. ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .....U-CGG -G-------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-UCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-UA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -GA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGUU U--GU-UAG- CA-AU-ACCC -AAA-A-GCA 3121 G-UAG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Smel 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Schneider,B., Cousin,M.T., Klinkong,D. and Seemueller,E. TITLE Taxonomic relatedness and phylogenetic position of phytoplasmas associated with diseases of faba bean, sunnhemp, sesame, soybean, and eggplant JOURNAL Z. Pflanzenkrankheiten Pflanzenschutz 102, 225-232 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83431|g603864 (bases 1 to 1530) BASE COUNT 458 a 282 c 411 g 377 t 2848 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -U-AACGC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCU-CU (--UA----- ---------- ---------- 241 -------AAA -)GG-AGGUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|UUU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------CC-- G(-GAAG-)- --GUU-A--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUAC--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GA-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-GU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -U|-GU-UA- 1261 G-AU-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UGUC UUGACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGN- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A --G-UGUCGG -G-------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-A-CGGGA -C-U-CC--G 1861 C-A--CA-AG CG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-UCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ----(---AU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -NA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-GCCC -GAA-A-GCA 3121 G-UAG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.beet 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27046|g598313 (bases 1 to 359) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 208 a 125 c 187 g 179 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .C-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUAC--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-GU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| NAG-GG-AUA |---C|A--G 2161 GU-GG-UGGA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -GA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ASH2 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting str. ASHY. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting str. ASHY. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33759|g537918 (bases 45 to 1478) BASE COUNT 422 a 254 c 381 g 343 t 2976 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ..UG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--UCU-A C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------CC-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AU-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------A| AAGGUA--U- G--CUU---- 661 ----AAAG-- AUG---A-|G CUUGC----- -GC|----CA C--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --GAAGAA-- GA-AAAA-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------C-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-GA-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UACC UUGACUA-GA GUU-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UU-GGG-G-- 1561 GC-AAA-CA- -G.(...... ....)..... .......... .......... .......... 1621 .....-.UGA G--UA-CU-- -------A|A -GU-GU-CGG -G-------- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-UCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-ACCC -GAA-A-GCA 3121 G-CAG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GA........ 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ASHY 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ASHY. str. ASHY. ACCESSION No information KEYWORDS No information. SOURCE str. ASHY. str. ASHY. ORGANISM str. ASHY. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68339|g433506 isolate_name= ASHY NB: genbank feature annotation incorrect BASE COUNT 452 a 282 c 401 g 367 t 2874 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AACCC-CU (--CA----- ---------- ---------- 241 --------AA -)AG-G--UU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--UCU-A C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------CC-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AU-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------A| AAGGUA--U- G--CUU---- 661 ----AAAG-- AUG---A-|G CUUGC----- -GC|----CA C--AUUA-G- UUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(- -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------C-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-GA-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UACC UUGACUA-GA GUU-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -G-------- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-UCUUA-CC AGG-UC-UUG ACA-UG|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-CA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGACGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-GCCC -GAA-A-GCA 3121 G-CAG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G ACGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|UAAGG AUAA~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.EY 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. EY. str. EY. ACCESSION No information KEYWORDS No information. SOURCE str. EY. str. EY. ORGANISM str. EY. REFERENCE 1 AUTHORS Maurer,R. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68377 isolate_name= EY BASE COUNT 72 a 43 c 62 g 62 t 4137 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... ......CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GGA-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CN--G 1861 CCA--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU..(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.FD 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. FD. str. FD. ACCESSION No information KEYWORDS No information. SOURCE str. FD. str. FD. ORGANISM str. FD. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76560|g435160 (bases 1 to 1493) isolate_name= FD BASE COUNT 441 a 278 c 412 g 362 t 2883 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ...C-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCC-UU (--UA----- ---------- ---------- 241 --------A- -)AA-GG-UC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UC-- G(-GAAA-)C -GGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--G-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAU-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUC C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------C-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UGUC UUGACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UCAAA)AUGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GGU-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGGAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAA-C--GC AACCC-CU-G |-UC--GCU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UA-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -AGA)GUUUU ---------- UA-GCCAU-- -UCAA-AAAG -GU-A-GUC- UCAGUACGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-ACCC -GAA-A-GCA 3121 G-UGG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCC-UUAC C(GGA-A)GG UGAGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ULW2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ULW. str. ULW. ACCESSION No information KEYWORDS No information. SOURCE str. ULW. str. ULW. ORGANISM str. ULW. REFERENCE 1 AUTHORS Seemuller,E., Schneider,B., Maurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.H., Firrao,G., Avinent,L. and Sears,B.B. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68376|g433507 isolate_name= ULW BASE COUNT 444 a 282 c 419 g 372 t 2859 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|UG 61 GCUCAG-GAU -U-AC-GC-- UGGC--GC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GACCC-UU (--CA----- ---------- ---------- 241 --------A- -)AA-GG-UC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UC-- G(-GAAA-)C -GGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--G-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAU-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------C-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UGUC UUGACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU--GG ---------- ---------- 1681 -(GGA-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCG|AG U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAA-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UA-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAG -GU-A-GUC- UCAGUACGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-ACCC -GAN-A-GCA 3121 G-UGG-C-UU -AA-CUUG-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG-G-A G-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGG--U 3301 U---AAGUC- GUAA-CAAGG UAUCC-UUAC C(GGN-N)GG UGAGGA-UAG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.EY2 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting str. EY. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting str. EY. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33763|g537922 (bases 45 to 1475) BASE COUNT 417 a 248 c 387 g 337 t 2987 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .....GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UC-- G(-GAAA-)C -GGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--G-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAU-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-AU --AGU-G--( ----GGAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCANC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-AU-AAG|U CUA---UAAU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-CU-- 1321 -UGUU-AUAG A-AAC-UGUC UUGACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G A...)..... .......... .......... .......... 1621 .....-.... .......... ........|. ........GG ---------- ---------- 1681 -(GGA-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAA-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UA-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAG -GU-A-GUC- UCAGUACGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAG- CA-AU-ACCC -GAA-A-GCA 3121 G-UGG-C-UU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCC-UUAC C(GGA-A)GG UGAGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.EY3 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting str. EY. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting str. EY. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27026|g598307 (bases 1 to 359) BASE COUNT 206 a 127 c 188 g 179 t 3676 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .C-A--G-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAU-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AAAA-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------A-U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-AUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAA-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AC)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UA-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAG -GU-A-GUC- UCAGUACGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Lwb 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33764|g537923 (bases 45 to 1478) BASE COUNT 428 a 244 c 376 g 348 t 2980 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ..UG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------AU-- G(-GAAA-)C -AUUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCU- ---------- 601 --(------- CCUAAAAAA- ---)------ ---------| -AGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AU --AGU-G--( -----GAAA- ---------) --AA-CU-AU 1081 ---------- -------C-U U-GA-CGCU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-UU-AAG|U CUA---UAAU U-UAA-UU-U CA-ACG-C(- UU-A)A-CGU -UG-U-UU-- 1321 -UGUU-AUAG A-AAC-UGCC U-AACUG-AG GUG-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GA(...... ....)..... .......... .......... .......... 1621 .....-.... ....U-CU-- -------A|A -GU-GU-CAG -G-------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- -CUUGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ----(---GU ---AAA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-UA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -UGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAA A--GU-GGA- CA-AU-ACCC -AAA-A-GCA 3121 G-UGG-C-UU -AA-UUUC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAAAGG-G-A A-CU-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Caja 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Harrison,N.A., Kramer,J.B., Richardson,P.A., Smart,C.D. and Tsai,J.H. TITLE Distinctions among mycoplasma-like organisms associated with witches' broom disease of pigeon pea in the tropics JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18763|g841195 BASE COUNT 456 a 286 c 408 g 374 t 2852 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -CGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------AG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CUUU---A -AGAC-G-UG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACA-GG 481 AU-AGG---- ---------- -------A-A AU-U--A-A- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- UU-AA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------A| AAGGUA--U- A--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU U-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-A-A U-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-AAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CAUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUA---UAGU U-UAA-AU-G CA-GUG-C(- UU-A)A-CGC -UG-U-AG-- 1321 -CGCU-AUAG A-AAC-UGUC U-GACUA-GA GUU-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -G-------- ---------- 1681 -(UUU-CG)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|A-- ---------U ---UUUG--- CGA----CAU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---AAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-G AC-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-UAA-C(G 2881 -UGA)GUUUA ---------- UG-GCCAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGA- UA-AU-ACCC -GAA-A-GCG 3121 G-UCG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CC-GU-CU A-AGGU-AGG AUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ppwb 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33735|g1044792 legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 433 a 265 c 378 g 347 t 2953 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A AUAC-AUGCA A-GUC-GAAC 121 G---A----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------A- -)GG-NN--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-NUNNG- CAG--CCU-G C-CUUU---A -AGAC-G-UG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -UGUU-G--C UAAGACA-GG 481 UU-AGG---- ---------- -------A-A AU-U--A-A- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- UU-AA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------A| AAGGUA--U- A--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GC|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-AG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU U-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCGA CGCC-GC-GU 961 G-A-AC-A-A U-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-AAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CAUU- A-UUC-A-AU GGAA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--CCACC CGCGGUA-A) U-A-C-AUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUA---UAGN U-UAA-AU-G CA-GUG-C(- UU-A)A-CGC -UG-U-AN-- 1321 -CGCU-AUAG A-AAC-UGUC U-GACUA-GA GUU-----AG A-UA-GAGNC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GCCAAA-CA- -GG(AUUA.. ....)..... .......... .......... .......... 1621 .....-..AA G......... ........|. ..N-NU-CGG -G-------- ---------- 1681 -(NNU-CG)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CCGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|A-- ---------U ---UUUG--- CGA----CAU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---AAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-G AC-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-UAA-C(G 2881 -UGA)GUUUA ---------- UG-GCCAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA AGUUG-UGA- UA-AU-ACCC -GAA-A-GCG 3121 G-UCG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CC-GU-CU A-AGGU-AGG AUC-GACUGA GUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGG..... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.CTLD 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting str. Tanzanian. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting str. Tanzanian. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Tymon,A.M. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X80117|g511045 BASE COUNT 452 a 285 c 410 g 374 t 2855 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCA--GGA -UUAACGC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CUUU---A -AGAC-G-AG 421 -AAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGGCU-GG 481 AU-AGG---- ---------- -------A-A AU-G--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--AUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UA 1081 ---------- ---------U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUC---UAGU U-UAA-UU-U CA-GCG-C(- UU-A)A-CGC -UG-U-CC-- 1321 -UGCU-AGAG A-AAC-UGUC U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UG-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GGC-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -U-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------U ---UCUG--- CGA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAC------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-UCUAA AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUAC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- UA-GCCAA-U CUCAA-AAAA -AU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGA- CA-AU-ACCC -AAA-A-ACG 3121 G-UAG-C-CU -AA-CUAC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G UAGAGG-G-A U-CC-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Coco 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Harrison,N.A., Kramer,J.B., Richardson,P.A., Smart,C.D. and Tsai,J.H. TITLE PCR amplification and analysis of 16S rDNA of mycoplasma-like organisms associated with coconut lethal decline diseases JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18753|g841194 BASE COUNT 449 a 286 c 416 g 386 t 2839 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAU-CU (--UUUAGAG AAAUCUUUU- ---------- 241 ---------- -)AG-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -AAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGGCU-GG 481 AU-AGG---- ---------- -------A-A AU-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ---UUCG--- ---)------ --------G| AGGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-C-AA --UAG-UG-( -----GGAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUC---UAGU U-UAA-UU-U CA-ACG-C(- UU-A)A-CGU -UG-U-CC-- 1321 -UGCU-AGAG A-AAC-UGUU U-GACUA-GA GUG-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -G-------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U UU-GAAACUU -AAA-GGAAU UG-ACGGG-A -U-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AAC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-UCUAA AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-C-CCA --AU(-GU-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 G-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-G-C-U- UA-AAA-C(G 2881 -CGA)GUUUU ---------- UG-GCAAA-U CUCAA-AAAA -AU-A-GUC- UUAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACGCCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GGA- CA-AU-ACCC -GAA-A-GCG 3121 A-UAG-C-CU -AA-CUGC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G CAGAGG-G-A A-UC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.lyp 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27031|g780099 (bases 1 to 359) legacy_attribute= lab_host=Cocos nucifera BASE COUNT 207 a 128 c 186 g 179 t 3676 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .U-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-C-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-UCUAA AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- CG-GCAAA-U CUCAA-AAAA -AU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Veit 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Harrison,N.A., Kramer,J.B., Richardson,P.A., Smart,C.D. and Tsai,J.H. TITLE PCR amplification and analysis of 16S rDNA of mycoplasma-like organisms associated with coconut lethal decline diseases JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U18747|g841193 specific_host= Veitchia merrillii BASE COUNT 451 a 285 c 412 g 376 t 2852 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAU-CU (--UU----- ---------- ---------- 241 ---------U -)AG-AUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -AAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGGCU-GG 481 AU-AGG---- ---------- -------A-A AU-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-C-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGUU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUC---UAGU U-UAA-UU-U CA-ACG-C(- UU-A)A-CGU -UG-U-CC-- 1321 -UGCU-AGAG A-AAC-UGUU U-AACUA-GA GUG-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGU -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -G-------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- -CUCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -U-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-UCUAA AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-AU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUUU ---------- CG-GCAAA-U CUCAA-AAAA -AU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GGA- CA-AU-ACCC -GAA-A-GCG 3121 A-CAG-C-CU -AA-CUGC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G CAGAGG-G-A A-UC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.SCWL 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SCWL. str. SCWL. ACCESSION No information KEYWORDS No information. SOURCE str. SCWL. str. SCWL. ORGANISM str. SCWL. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76432|g433944 isolate_name= SCWL BASE COUNT 454 a 287 c 405 g 372 t 2858 others ORIGIN 1 .......... .......... .......... .......... ...GCC(C-G A)U-CCU|-U 61 GCUCA--GGA -UUAACGC-- UGGC-GGA-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AU-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGAU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CAC -UG-U-CC-- 1321 -UGCU-AUAG A-AAC-UAUU A-GACUA-GA GUG-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GAU-UA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GCAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUUA ---------- UA-GCCAA-U CUCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- UA-AU-ACUC -AAA-A-ACG 3121 G-UAG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG AUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ryd 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. rice str. rice yellow dwarf. ACCESSION No information KEYWORDS No information. SOURCE str. rice str. rice yellow dwarf. ORGANISM str. rice. REFERENCE 1 AUTHORS Namba,S., Oyaizu,H., Kato,S., Iwanami,S. and Tsuchizaki,T. TITLE Phylogenetic diversity of phytopathogenic mycoplasmalike organisms JOURNAL Int. J. Syst. Bacteriol. 43, 461-467 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12581|g467514 legacy_attribute= biovar:Group III MLO isolate_name= rice yellow dwarf BASE COUNT 412 a 247 c 362 g 341 t 3014 others ORIGIN 1 .......... .......... .......... .......... .UCGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-UU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UU (--UU----- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAAACU-GG 481 AU-AGG---- ---------- -------A-A AU-U--A-A- ---AAG-(-- --------GU 541 AU-------- -)-CUU---- UU-AA----U UU-UUAAA-- ---AGACUUC U--------- 601 --(------- ---UUC---- ---)------ --------G| AAGGUA--U- A--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGCU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CAC -UG-U-CC-- 1321 -UGCU-AUAG A-AAC-UAUC A-GACUA-GA GUG-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GGG-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GCAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-U- U-AAU-GA-G A-CU-G-CCA --AU(-AA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UA-AAA-C(G 2881 -UAA)GUUC- ---------- AA-GCCAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Kampmann,M. and Seemueller,E. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83438|g603863 (bases 1 to 1494) BASE COUNT 448 a 284 c 403 g 358 t 2883 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -AAUU-G--C UAAGGCU-GG 481 AU-AGU---- ---------- -------A-A AC-U--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-AG----U UU-UUAAA-- ---AGACCUU C--------- 601 --(------- ----UUU--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UAA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGNC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--UU-AG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-CGCU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 G-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CAC -UG-U-CC-- 1321 -UGCU-AUAG A-AAC-UAUC A-GACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-UUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-G-UCGG ---------- ---------- 1681 -(GGG-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGG-GA -C-U-CG--C 1861 A-C--AA-GC GG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GCAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCU- 2281 AA--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UC-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUUU ---------- UG-GCCAA-U CCCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGA- UA-AU-ACCC -AAA-A-ACG 3121 G-UAG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CC-GU-CU A-AGGU-AGG AUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.BVK 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. BVK. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. BVK. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76429|g433945 biol_source= Catharanthus roseus isolate_name= BVK BASE COUNT 451 a 286 c 402 g 369 t 2868 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCUU-GGA -UUAAGGC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUUU---A -AGAC-G-AG 421 -AAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AU-U--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-AA----U UU-UUAAA-- ---AGACCUU U--------- 601 --(------- ---UUCG--- ---)------ --------G| AAGGUA--U- G--CUU---- 661 ----AAAG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --AA-GAA-- GA-AA-A-AA --UAG-UG-( -----GAAA- ---------) -AAC-UA-UC 1081 ---------- ---------U U-GA-C-GU- A-UUC-A-AU G-AA--UAAG ---------C 1141 -CCCGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CAC -UG-U-UC-- 1321 -UGCU-AUAG A-AAC-UAUU A-GACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG--A- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GGG-AA)C ---------- ---------- ---------- ---------- --UCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UGU-A--(- GCAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UA-AAA-C(G 2881 -CAA)GUUCA ---------- UA-GCCAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- UA-AU-ACUC -GAA-A-ACG 3121 G-UAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -CUUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -----G-G-A A-CC-GU-CU A-AGGU-AGG AUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.SUNHP 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. SUNHP. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. SUNHP. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76433|g433943 biol_source= Corotolaria juncea isolate_name= SUNHP BASE COUNT 432 a 296 c 406 g 351 t 2891 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .........G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CCUA---A -AGAC-G-AG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GA-U--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GU-AU----C UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GUUAA-- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----UAGG-- AGG---G-|G CUUGC----- -GC|----CA U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUAA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUCUAAN CCGA|-ACAA CGCC-GC-GU 961 G-A-AU-A-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-CG 1021 --AG-GAA-- GA-AAAG-CA --AAU-GG-( -----CGAA- ---------) -CCA-UU-UG 1081 ---------- -------U-U U-NC-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAA |-GGGG-C-- 1201 AAG-UGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAG---UNGU G-UAA-UG-U CA-ACG-C(- UU-A)A-CGU -UG-U-CC-- 1321 -GGCU-AUUG A-AAC-UGCU A-AACUU-GA GUU-----AG A-UA-GAGGC GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CCGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C C)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|U-- ---------U ---UUUC--- CAA----AAU 1981 -GAU-A--(- GUAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAC------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -CA-GA--AA |---C|AC-G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GA AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUCU ---------- UG-GCCAA-U CCCCA-AAAA --C-A-GUC- CCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-ACG 3121 G-UAG-C-CU -AA-CUCG-- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GAGAGG-G-C G-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Spwb 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33770|g537927 (bases 45 to 1477) BASE COUNT 409 a 271 c 388 g 322 t 2986 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CCUA---A -AGAC-G-AG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GA-U--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GU-AU----C UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GUUAA-- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----UAGG-- AGG---G-|G CUUGC----- -GC|----CA U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-CG 1021 --AG-GAA-- GA-AAAG-CA --AAU-GG-( -----CGAA- ---------) -CCA-UU-UG 1081 ---------- -------U-U U-GC-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAA |-GGGG-C-- 1201 AAG-UGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAG---UGAU A-AAA-NN-A CG-ACG-C(- UU-A)A-CGU -UG-U-CC-- 1321 -GGCU-AUUG A-AAC-UGCU A-AACUU-GA GUU-----AG A-UA-GAGGC GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUNCUG-- ---------- ---------- ---------G 1501 GUC--CU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-NN- NN-GGG-GA- 1561 GC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-...A G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C C)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|U-- ---------U ---UUUG--- CAA----AAU 1981 -GAU-A--(- GUAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAC------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -CA-GA--AA |---C|ACAG 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GA AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGC-A-G-C- UG-AAA-C(G 2881 -CAA)GUUCU ---------- UG-GCCAA-U CCCCA-AAAA --C-A-GUC- CCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-ACG 3121 G-UAG-C-CU -AA-CUCG-- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GAGAGG-G-C G-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Pwb 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33765|g537924 (bases 45 to 1477) BASE COUNT 416 a 280 c 403 g 334 t 2943 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ......CGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CCUA---A -AGAC-G-AG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GA-U--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GU-AU----C UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GUUAA-- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----UAGG-- AGG---G-|G CUUGC----- -GC|----CA U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-CG 1021 --AG-GAA-- GA-AAAG-CA --AAU-GG-( -----CGAA- ---------) -CCA-UU-UG 1081 ---------- -------U-U U-GC-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAA |-GGGG-C-- 1201 AAG-UGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAG---UGGU G-UAA-UG-G CA-ACG-C(- UU-A)A-CGU -UG-U-CC-- 1321 -GGCU-AUUG A-AAC-UGCU A-AACUU-GA GUU-----AG A-UA-GAGGC GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUAGG UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-G-UCGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C C)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|U-- ---------U ---UUUG--- CAA----AAU 1981 -GAU-A--(- GUAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAC------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -CA-GA--AA |---C|ACAG 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GA AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUCU ---------- UG-GCCAA-U CCCCA-AAAA --C-A-GUC- CCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-ACG 3121 G-UAG-C-CU -AA-CUCG-- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GAGAGG-G-C G-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Vfab 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Schneider,B., Cousin,M.T., Klinkong,D. and Seemueller,E. TITLE Taxonomic relatedness and phylogenetic position of phytoplasmas associated with diseases of faba bean, sunnhemp, sesame, soybean, and eggplant JOURNAL Z. Pflanzenkrankheiten Pflanzenschutz 102, 225-232 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83432|g603865 (bases 1 to 1479) BASE COUNT 427 a 291 c 410 g 350 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ...C-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CCUA---A -AGAC-G-AG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GA-A--A-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- AU-UU----C UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GUAA--- ---)------ -----U---| -AGGUA--U- A--CUU---- 661 ----UAGG-- AGG---G-|G CUUGC----- -GC|----CA U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UN 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-UG --)GU-AUGU AAA--GUUC| UUUU-AU-CA 1021 --AG-GAA-- GA-AAAG-CA --AGU-GG-( -----CGAA- ---------) -CCA-UU-UG 1081 ---------- -------U-U U-GC-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAA |-GGGG-C-- 1201 AAG-UGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAG---UGGU G-UAA-UG-G CA-ACG-C(- UC-A)A-CGU -UG-U-CC-- 1321 -GGCU-AUUG A-AAC-UGCU A-AACUU-GA GUU-----AG A-UA-GAGGC GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG C-GUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C C)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|U-- ---------U ---UUUG--- CGA----AAC 1981 -GGU-A--(- GUAA-)-UAU -C-GUA---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -CA-GA--AA |---C|ACAG 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GA AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -UAA)GUUCU ---------- UG-GCCAA-U CCCCA-AAAA -AC-A-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-AUG 3121 G-UAG-C-CU -AA-CUCG-- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GAGAGG-G-C G-CU-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.WBDL 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Zreik,L., Carle,P., Bove,J. and Garnier,M. TITLE Characterization of the mycoplasmalike organism associated with witches'-broom disease of lime and proposition of a Candidatus taxon for the organism, "Candidatus Phytoplasma aurantifolia" JOURNAL Int. J. Syst. Bacteriol. 45, 449-453 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15442|g567051 (bases 1 to 1513) Former RDP Sids: M.mlo.Cits legacy_attribute= Witches'-broom disease of small-fruited acid lime BASE COUNT 429 a 299 c 428 g 357 t 2863 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-A C-CCUA---A -AGAC-G-AG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GA-A--A-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UU----C UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GUGA--- ---)------ -----U---| -AGGUA--U- A--CUU---- 661 ----UAGG-- AGG---G-|G CUUGC----- -GC|----CA U--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GGCGU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-UG --)GU-AUGU AAA--GUUC| UUUU-AU-CA 1021 --AG-GAA-- GA-AAAG-CA --AGU-GG-( -----UGAA- ---------) -CCA-UU-UG 1081 ---------- -------U-U U-GC-CGGU- A-CUU-G-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) G-A-C-AUAA |-GGGG-C-- 1201 AAG-UGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-GU-AAG|U CAG---UGGU G-UAA-UG-G CA-ACG-C(- UC-A)A-CGU -UG-U-CC-- 1321 -GGCU-AUUG A-AAC-UGCU A-AACUU-GA GUU-----AG A-UA-GAGGC GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-- UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUCGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-G-UCGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-C---G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C C)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UG|U-- ---------U ---UUUG--- CGA----AAC 1981 -GGU-A--(- GUAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| -CA-GA--AA |---C|ACAG 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-GC-GA AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-AGG-A UC-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUCU ---------- UG-GCCAA-U CCCCA-AAAA --C-A-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-ACG 3121 G-UAG-C-CU -AA-CUCG-- ---------- ---------- -----(---- UUUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------C GAGAGG-G-C G-CU-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.twb 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. tsuwabuki str. tsuwabuki witches' broom. ACCESSION No information KEYWORDS No information. SOURCE str. tsuwabuki str. tsuwabuki witches' broom. ORGANISM str. tsuwabuki. REFERENCE 1 AUTHORS Namba,S., Oyaizu,H., Kato,S., Iwanami,S. and Tsuchizaki,T. TITLE Phylogenetic diversity of phytopathogenic mycoplasmalike orgenisms JOURNAL Int. J. Syst. Bacteriol. 43, 461-467 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12580|g436043 legacy_attribute= biovar:Group II MLO isolate_name= tsuwabuki witches' broom BASE COUNT 408 a 248 c 374 g 340 t 3006 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AUACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CCUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AA-G--U-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGACCU- -----U---- 601 --(------- ---CUUU--- ---)------ -----G---| -AGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AG(--GU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GCG-C(- UU-A)A-CCG -GU-U-UG-- 1321 -UGCU-AUAG A-AAC-UGUU U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|U-- ---------U ---CUUG--- CGA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG U)-CGUGA-G 2221 AU-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -UGA)GUUUU ---------- UA-GCCAA-U CUCAU-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGC-AU)-G UCA-CGGUG- AAUAC-GUU- CUC-GGG-GU U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.VAC 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. VAC. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. VAC. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76430|g433948 biol_source= Vaccinium myrtillus isolate_name= VAC BASE COUNT 454 a 288 c 405 g 367 t 2862 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUN-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CCUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------N-A AA-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGACCUU ---------- 601 --(------- ---CUUUG-- ---)------ ---------| AAGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA CC-AUUA-G- UUA-G---UU 721 GGCGA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -ANUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UC- -(UACG)--G UAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GCG-C(- UU-A)A-CGC -UG-U-UG-- 1321 -UGCU-AUAG A-AAC-UGUU U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCN. .......... .......... ..CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CN--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|U-- ---------U ---CUUG--- CGA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAU-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAACUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GAA-(UC -AGC-AU)-G UCA-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC CAAA-G-C-G 3121 G-UCA-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAAG-G-A U-CC-GU-CU A-AGGU-AGG GUC-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|UAAGG AAACAA~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.C3 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33766|g537925 (bases 45 to 1472) BASE COUNT 419 a 257 c 376 g 334 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........A- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CCUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AA-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGACCUU ---------- 601 --(------- ---CUUUG-- ---)------ ---------| GAGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAA |-AGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-UG-- 1321 -UGCU-AUAG A-AAC-UGUU U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCU(-G GAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GA(...... ....)..... .......... .......... .......... 1621 .....-.... .......... .......C|U -GA-GU-CGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|U-- ---------U ---CUUG--- CGA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AA--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAC-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC CAAA-G-C-G 3121 G-UCG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAAG-G-A U-CC-GU-CU A-AGGU-AGG GUC-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Cpch 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33733|g537917 (bases 45 to 1493) NB: duplicated bases after 1347n removed: 'AUCCGUCUAAGGUAGGGUCGAUAA' BASE COUNT 423 a 255 c 378 g 338 t 2982 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........A- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CCUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AA-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGAUCUU ---------- 601 --(------- ---CUUUG-- ---)------ ---------| AAGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-UG-- 1321 -UGCU-AUAG A-AAC-UGUU U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(...... ....)..... .......... .......... .......... 1621 .....-AUGA G--UA-CU-- -------A|A -GU-NU-CGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CUGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|U-- ---------U ---CUUG--- CGA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UCAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC CAAA-G-C-G 3121 G-UCA-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAAG-G-A U-CC-GU-CU A-AGGU-AGG GUC-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.WX 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Schneider,B., Ahrens,U., Kirkpatrick,B.C. and Seemueller,E. TITLE Classification of plant pathogenic mycoplasma-like organisms using restriction site analysis of PCR-amplified 16S rDNA JOURNAL J. Gen. Microbiol. 139, 519-527 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L04682|g1009205 BASE COUNT 455 a 289 c 412 g 369 t 2851 others ORIGIN 1 .......... .......... .......... ....AAACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- CAA--CCU-G C-CCUU---A -AGAC-G-AG 421 -GAU-AA-CA A--------- ------UU-- G(-GAAA-)C -AGUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AA-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGAUCU- -----U---- 601 --(------- ---CUUU--- ---)------ -----GA--| -AGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-UU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAA |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UAGU U-UAA-UU-U CA-GUG-C(- UU-A)A-CGC -UG-U-UG-- 1321 -UGCU-AUAG A-AAC-UGUU U-UACUA-GA GUG-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-G-GC(-G UA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CUGG-UAC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUGC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UU|U-- ---------U ---CUUG--- CGA----AGU 1981 -UAU-A--(- GAAA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UCAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -CAA-A-GCG 3121 G-UCA-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAAG-G-A U-CC-GU-CU A-AGGU-AGG GUC-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)-G UGGGGA--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.chok 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27010|g598304 (bases 1 to 359) BASE COUNT 211 a 128 c 184 g 176 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .A-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGAUCU- -----U---- 601 --(------- ---CUUUG-- ---)------ -----A---| -AGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UCAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.west 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27049|g598316 (bases 1 to 359) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 211 a 129 c 184 g 175 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .A-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGAUCU- -----U---- 601 --(------- ---CUUUG-- ---)------ -----A---| -AGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UCAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.pyl 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27042|g780105 (bases 1 to 359) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 211 a 128 c 184 g 176 t 3677 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .A-G--U-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UA-CU----U UU-UUAAA-- ---AGAUCU- -----U---- 601 --(------- ---CUUUG-- ---)------ -----A---| -AGGUA--U- G--CUU---- 661 ----AAGG-- AGG---G-|G CUUGC----- -GA|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AC(--CU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AG-GAA-- GA-AA-A-AA --GAG-UG-( -----GAAA- ---------) -AAC-UC-C- 1081 ---------- -------C-U U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A AUUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UCAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-AAA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUAA AA-------- UGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CCA --AU(-GA-A AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -CGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -UC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II. ORGANISM 2.16.9.1.2 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_II. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.BAWB 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. BAWB. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. BAWB. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76431|g433961 biol_source= Rhamnus frangula isolate_name= BAWB BASE COUNT 447 a 268 c 390 g 364 t 2907 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .....CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---C -AGAC-G-AG 421 -GAU-AA-CG A--------- ------UU-- G(-GAAA-)C -GAUU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A AU-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- AA-AA----U UU-UUAAA-- ---AGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -AGGUA--U- G--CUG---- 661 ----AAAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUU-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AU(--UU-CG --)AU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUG---UGGU U-UAA-AC-U NA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -CG-U-AUAG A-AAC-UGUU U-AACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCGG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A-U(- AGCAA)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--ACU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-N- U-AGU-GA-G A-CU-G-CUA --AU(-GA-U AA)-AUU-G- -GNGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UNCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAA A--GU-CGG- UA-AU-ACCC -AAA-A-CCA 3121 G-CAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG AUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pht.sp1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phytoplasma sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytoplasma sp. ORGANISM Phytoplasma sp. REFERENCE 1 AUTHORS Marcone,C., Ragozzino,A., Schneider,B., Lauer,U., Smart,C.D. and Seemueller,E. TITLE Genetic characterization and classification of two with witches' broom disease of pigeon pea in the tropics JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X92869|g1072391 (bases 1 to 1515) BASE COUNT 444 a 278 c 419 g 374 t 2861 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--UCU-G C-CUCU---C -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GU-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AA----C UU-UUAAA-- ---AGACCU- ---------- 601 --(------- ---GAAA--- ---)------ ---------| -GGGUA--U- G--CUG---- 661 ----AGAG-- AUG---A-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GGU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UGGU G-UAA-GU-G CA-ACG-C(- UC-A)A-CGU -UG-U-GA-- 1321 -AGCU-AUAG A-AAC-UGUU A-GACUU-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C G)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|A-- ---------C ---GUGG--- CAA----AGC 1981 -UAU-U--(- GAAA-)-GAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-CG-UUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -UGA)GUUCU ---------- UA-GCCAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGA- CA-AU-ACCC -GAA-A-CCA 3121 G-UGG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ACL2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ACLR. str. ACLR. ACCESSION No information KEYWORDS No information. SOURCE str. ACLR. str. ACLR. ORGANISM str. ACLR. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26998|g598295 (bases 1 to 357) legacy_attribute= lab_host=Prunus armeniaca isolate_name= ACLR BASE COUNT 207 a 127 c 181 g 178 t 3683 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .U-U--U-U- ---AAG-(-- --------AC 541 AU-------- -)-CUC---- GA-AA----C UU-UUAAA-- ---AGACCC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GG-UA--U- G--CUG---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-AG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--ACU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAA-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.plum 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Firrao,G. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77372|g944832 BASE COUNT 354 a 214 c 323 g 294 t 3191 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... ...GACU-GG 481 AU-AUG---- ---------- -------A-A GU-U--U-U- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GA-AA----C UU-UUAAA-- ---AGACCC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| --GUAA--U- G--CUG---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-AG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUGG |GGGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U CUA---UGGU A-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAG A-AAC-UGUU U-GACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG .......... .......... .UUAAU--CG -(-AGAUA-C A)--CG--AA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--ACU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAA- AGU-A-G-C- UG-AAA-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAG-CUU- CUC-GGG... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.PPE2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. PPER. str. PPER. ACCESSION No information KEYWORDS No information. SOURCE str. PPER. str. PPER. ORGANISM str. PPER. REFERENCE 1 AUTHORS Seemuller,E., Schneider,B., Maurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.H., Firrao,G., Avinent,L. and Sears,B.B. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68374|g433904 isolate_name= PPER BASE COUNT 442 a 269 c 402 g 361 t 2902 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-U---A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUCU---C -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AUG---- ---------- -------A-A GU-U--U-U- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GA-AA----C UU-UUAAA-- ---AGACCC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUA--U- G--CUG---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-AG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUGG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U CUA---UGGU A-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAG A-AAC-UGUU U-AACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-C---G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--ACU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGUCGA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGA- CA-AU-ACCC -AAA-A-CCA 3121 G-UAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spMpumil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76426|g433679 BASE COUNT 437 a 273 c 404 g 365 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... GCUG-CGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---C -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GU-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AA----C UU-UUAAA-- ---AGACC-- ---------- 601 --(------- ---CGUAA-- ---)------ ---------| --GGUA--U- G--CUG---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-CA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-AG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUGG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UGGU C-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAG A-AAC-UGUU U-GACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G--A- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- -A-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAA A--GU-UGA- CA-AU-ACCC -GAA-A-CCA 3121 G-UAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spunk1_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. PD. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. PD. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemuller,E., Schneider,B., Maurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.H., Firrao,G., Avinent,L. and Sears,B.B. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76425|g433680 legacy_attribute= non-culturable plant-pathogenic mollicute from Pyrus communis isolate_name= PD BASE COUNT 437 a 273 c 404 g 365 t 2897 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... GCUG-CGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-A C-CUUU---C -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GU-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AA----C UU-UUAAA-- ---AGACC-- ---------- 601 --(------- ---CGUAA-- ---)------ ---------| --GGUA--U- G--CUG---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-CA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GCA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-AG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUGG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UGGU C-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAG A-AAC-UGUU U-GACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAG-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G--A- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CG-UGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUU- ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAA A--GU-UGA- CA-AU-ACCC -GAA-A-CCA 3121 G-UAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.AP 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Italian. str. Italian. ACCESSION No information KEYWORDS No information. SOURCE str. Italian. str. Italian. ORGANISM str. Italian. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72206 isolate_name= Italian BASE COUNT 236 a 147 c 224 g 209 t 3560 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .........G |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UGGU A-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUGG A-AAC-UGUU U-GACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 --CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG....... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.AT2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. AT. str. AT. ACCESSION No information KEYWORDS No information. SOURCE str. AT. str. AT. ORGANISM str. AT. REFERENCE 1 AUTHORS Seemuller,E., Schneider,B., Maurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.H., Firrao,G., Avinent,L. and Sears,B.B. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68375|g433426 isolate_name= AT BASE COUNT 441 a 265 c 406 g 366 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-CU (--UU----- ---------- ---------- 241 --------U- -)AG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAAG- UAA--CCU-G C-CUCU---U -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-A GU-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AA----C UU-UUAAA-- ---AGACCC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUA--U- G--CUA---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--A-U AU(--UU-AG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-AUGG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GGGU- GUG-UAG-GC -G|-GU-UU- 1261 A-AU-AAG|U CUA---UGGU A-UAA-GU-U CA-ACG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUGG A-AAC-UGUU U-GACUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(GUU-AA)A ---------- ---------- ---------- ---------- --CCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGUGGA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-UGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAA A--GU-UGA- CA-AU-ACUC -GAA-A-CCA 3121 G-UAG-C-CU -AA-CUU--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AAGAGG-G-A A-CU-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.AP2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Apple str. Apple proliferation. ACCESSION No information KEYWORDS No information. SOURCE str. Apple str. Apple proliferation. ORGANISM str. Apple. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L26996|g598298 (bases 1 to 357) legacy_attribute= lab_host=Catharanthus roseus isolate_name= Apple proliferation BASE COUNT 206 a 126 c 182 g 178 t 3684 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .U-U--U-U- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AA----C UU-UUAAA-- ---AGACCC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GG-UA--U- G--CUA---- 661 ----AGAG-- AUG---G-|G CUUGC----- -GG|----CA C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--A-U AU(--UU-AG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --AA-GAA-- GA-AAAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-UUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACGAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-U- U-AGU-GA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UU-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG AGU-A-G-C- UG-AAG-C(G 2881 -UGA)GUUUU ---------- UA-GCAAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 NC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III. ORGANISM 2.16.9.1.3 MYCOPLASMA-LIKE-ORGANISM_SUBGROUP_III. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.C2 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33762|g537921 (bases 45 to 1472) BASE COUNT 403 a 262 c 391 g 326 t 2994 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCANC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UU-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-ANCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-UC- GU-GGG-GA- 1561 GC-AAA-CA- -G.(...... ....)..... .......... .......... .......... 1621 .....-.... .......U-- -------A|A -AU-GU-UG- ---------- -C-------- 1681 -(CUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUNCU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGGUA -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 C-CCNCA-CC AGG-UC-UUG ACA-UN|C-- ---------U ---UCUN--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-ACA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -UAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUG-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.ACLR 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. ACLR. str. ACLR. ACCESSION No information KEYWORDS No information. SOURCE str. ACLR. str. ACLR. ORGANISM str. ACLR. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68338 isolate_name= ACLR BASE COUNT 437 a 276 c 411 g 350 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .CUCAG-GAU -UAACCGCC- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- NAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UA----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-U-C -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CUGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-----G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGU 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ANACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-C-GCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAAC...... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.AAY2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. AAY. str. AAY. ACCESSION No information KEYWORDS No information. SOURCE str. AAY. str. AAY. ORGANISM str. AAY. REFERENCE 1 AUTHORS Seemuller,E., Schneider,B., Maurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.H., Firrao,G., Avinent,L. and Sears,B.B. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X68373 isolate_name= AAY BASE COUNT 443 a 291 c 428 g 351 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~GAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AGG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-A AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUAAC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACU-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GAG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- N-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- UA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAAC--GUCC C(.....).. .GGGGA--UC CAAUC..... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.SAY 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SAY. str. SAY. ACCESSION No information KEYWORDS No information. SOURCE str. SAY. str. SAY. ORGANISM str. SAY. REFERENCE 1 AUTHORS Schneider,B., Ahrens,U., Kirkpatrick,B.C. and Seemueller,E. TITLE Classification of plant-pathogenic mycoplasma-like organisms using restriction-site analysis of PCR amplified 16S rDNA JOURNAL J. Gen. Microbiol. 139, 519-527 (1993) STANDARD No information REFERENCE 2 AUTHORS Kuske,C.R. and Kirkpatrick,B.C. TITLE Phylogenetic relationships between the western aster yellows mycoplasmalike organism and other prokaryotes established by 16S rRNA gene sequence JOURNAL Int. J. Syst. Bacteriol. 42, 226-233 (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M86340 Former RDP Sids: M.mlo.unk isolate_name= SAY BASE COUNT 447 a 295 c 432 g 361 t 2841 others ORIGIN 1 .......... .......... .......... ....AUACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AGG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUAAC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- -G-------- 1681 -(UAA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- UA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.AY 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33767|g537926 (bases 45 to 1492) BASE COUNT 411 a 272 c 402 g 332 t 2959 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ..UG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAA-AU --GAU-G--( -----GAAA- ---------) --AA-UC-AU 1081 ---------- -------U-C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G A...)..... .......... .......... .......... 1621 .....-.... ...UA-CU-- -------A|A -AC-GU-UGG ---------- -G-------- 1681 -(UAA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUC-C C)--CGAAAA 1921 C-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- UA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|UGAAG .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.blue 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27008|g598301 (bases 1 to 359) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 196 a 137 c 195 g 170 t 3678 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .U-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UC----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- G--AAUA-AA --UGA-UG-( -----GAAA- ---------) -AAU-CA-UU 1081 ---------- ---------C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCG --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGC-A-G-C- UG-AAA-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Pwb2 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L27033|g780102 (bases 1 to 359) legacy_attribute= lab_host=Catharanthus roseus BASE COUNT 198 a 136 c 195 g 169 t 3678 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... .C-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGU-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- G--AAUA-AA --UGA-UG-( -----GAAA- ---------) -AAU-CA-UU 1081 ---------- ---------C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA....... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GA-GG-AGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC..... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.onth 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Lim,P.-O. and Sears,B.B. TITLE 16s rRNA sequence indicates that plant-pathogenic mycoplasmalike organisms are evolutionarily distinct from animal mycoplasmas JOURNAL J. Bacteriol. 171, 5901-5906 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M30790 BASE COUNT 446 a 298 c 433 g 358 t 2841 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AUACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GG-AAUA-AA --UGA-UG-( -----GAAA- ---------) -AAU-CA-UU 1081 ---------- -------G-C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-C|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC CAGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.I 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. onion str. onion yellows. ACCESSION No information KEYWORDS No information. SOURCE str. onion str. onion yellows. ORGANISM str. onion. REFERENCE 1 AUTHORS Namba,S., Oyaizu,H., Kato,S., Iwanami,S. and Tsuchizaki,T. TITLE Phylogenetic diversity of phytopathogenic mycoplasmalike organisms JOURNAL Int. J. Syst. Bacteriol. 43, 461-467 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D12569|g436044 legacy_attribute= biovar:Group I MLO isolate_name= onion yellows; tomato yellows, mulberry dwarf; Paulownia witches' broom BASE COUNT 403 a 259 c 387 g 328 t 2999 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AUACGA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- G--AAUA-AA --UGA-UG-( -----GAAA- ---------) -AAU-CA-UU 1081 ---------- ---------C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUAC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAG-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC CAGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU U......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.Lprn 4376 bp RNA RNA 02-JUL-1998 DEFINITION MLO infecting. ACCESSION No information KEYWORDS No information. SOURCE MLO infecting. ORGANISM MLO infecting. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33760|g537919 (bases 45 to 1476) BASE COUNT 420 a 273 c 403 g 336 t 2944 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .GUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-A C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGU---- ---------- -------A-G AC-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- CU-UG----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---UUAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AGG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- G--AAUA-AA --UGA-UG-( -----GAAA- ---------) -AAU-CA-UU 1081 ---------- ---------C U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -U|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UC-A)A-CAU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUA-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-AU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UCUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-CAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-UU-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UG-AAA-C(G 2881 -CAA)GUUUU ---------- UG-GCGAA-U CUCAA-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-A-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A A-CC-GU-CU A-AGGU-AGG GUC-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pht.spPho2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phytoplasma sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytoplasma sp. ORGANISM Phytoplasma sp. REFERENCE 1 AUTHORS Liefting,L.W., Andersen,M.T., Beever,R.E., Gardner,R.C. and Forster,R.L.S. TITLE Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma JOURNAL Appl. Environ. Microbiol. 62 (9), 3133-3139 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43570|g1171226 operon= rrnB operon specific_host= Phormium tenax (New Zealand flax) BASE COUNT 439 a 281 c 415 g 348 t 2893 others ORIGIN 1 .......... .......... .......... .........A AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AU-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U CU-UUAAA-- ---AGACCU- -----C---- 601 --(------- ---GCAA--- ---)------ -----G---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AAG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-AGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AA-A-GA --UGG-UG-( -----GAAA- ---------) -AAC-CA-UU 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-AU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UUUG--- CAA----AGC 1981 -GGU-A--(- GAAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGC-A-G-C- UA-AAG-C(G 2881 -UAA)GCUUU ---------- UG-GCGAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUU-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Pht.spPhor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Phytoplasma sp.. ACCESSION No information KEYWORDS No information. SOURCE Phytoplasma sp. ORGANISM Phytoplasma sp. REFERENCE 1 AUTHORS Liefting,L.W., Andersen,M.T., Beever,R.E., Gardner,R.C. and Forster,R.L.S. TITLE Sequence heterogeneity in the two 16S rRNA genes of Phormium yellow leaf phytoplasma JOURNAL Appl. Environ. Microbiol. 62 (9), 3133-3139 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U43569|g1171225 operon= rrnA operon specific_host= Phormium tenax (New Zealand flax) BASE COUNT 438 a 282 c 416 g 347 t 2893 others ORIGIN 1 .......... .......... .......... .........A AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- CAA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AU-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U CU-UUAAA-- ---AGACCU- -----C---- 601 --(------- ---GCAA--- ---)------ -----G---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AAG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AA-A-GA --UGG-UG-( -----GAAA- ---------) -AAC-CA-UU 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-AUG-C(- UU-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -A-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-AU-UGG ---------- ---------- 1681 -(GUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UUUG--- CAA----AGC 1981 -GGU-A--(- GAAA-)-UAU -C-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGC-A-G-C- UA-AAG-C(G 2881 -UAA)GCUUU ---------- UG-GCGAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUC-- ---------- ---------- -----(---- -ACAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AAGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUU-GA-UA- AUU-GGGG-U 3301 U---AAGUC- GUAA...... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mlo.VK 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. VK. str. VK. ACCESSION No information KEYWORDS No information. SOURCE str. VK. str. VK. ORGANISM str. VK. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76428|g433908 isolate_name= VK BASE COUNT 444 a 288 c 418 g 350 t 2876 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -U-C-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- -AA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AU-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AAG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA UGCC-GU-GU 961 GCA-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AA-A-GA --UGG-UG-( -----GAAA- ---------) -AAC-CA-UU 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-ACG-C(- UC-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUU-----GG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCGUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-CGGAGG- AACA-CCAG- 1441 -A-A-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----NGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UUUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UA-AAG-C(G 2881 -UAA)GCUUC ---------- UG-GCGAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUGA- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------UC AAGAAG-G-A G-CC-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.STOL 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. STOL. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. STOL. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Seemueller,E., Schneider,B., Maeurer,R., Ahrens,U., Daire,X., Kison,H., Lorenz,K.-H., Firrao,G., Avinent,L., Sears,B.B. and Stackebrandt,E. TITLE Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA JOURNAL Int. J. Syst. Bacteriol. 44, 440-446 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X76427|g433907 biol_source= plant-pathogenic mollicute transmitted from C .annumto and maintained in C.roseus isolate_name= STOL BASE COUNT 439 a 286 c 416 g 348 t 2887 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ..GC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGUUU-AA (--GC----- ---------- ---------- 241 --------AA -)UU-AAACU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUAAG- -AA--UCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G AU-A--A-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UA----U UU-UUAAA-- ---AGACCU- -----A---- 601 --(------- ---GCAA--- ---)------ -----U---| -AGGUA--U- G--CUU---- 661 ----AGGG-- AAG---A-|G CUUGC----- -GU|----CA C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UG 781 U-AG-C-CG| -G-GCU--(G -AGA)-GGUC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-GGCAAU-- GG-AG-(GAA A)-CUC-UGA CCGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-U AU(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AA-A-GA --UGG-UG-( -----GAAA- ---------) -AAC-CA-UU 1081 ---------- -------A-- U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UUA---UGGU C-UAA-GU-G CA-ACG--(- UC-A)A-CGU -UG-U-GA-- 1321 -UGCU-AUAA A-AAC-UGUU U-AGCUA-GA GUU-----GG A-UA-GAGGC AAG-U|NGAA 1381 UU-CCGUGU- GUA-GUG(-G UAAAA)-UGC -GU-AAAU-A UA-CGGAGG- AACA-CCAG- 1441 -A-A-GC(-G AA-G)NCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UU-AA CUGACG-CUG AG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -AC-GU-UGG ---------- ---------- 1681 -(AUA-AA)A ---------- ---------- ---------- ---------- --CCAG-UGU 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-U-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGGUA-C C)--CGAAAA 1921 A-CCUCA-CC AGG-UC-UUG ACA-UG|C-- ---------U ---UUUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-GCA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-U- U-AGC-AA-G A-CU-G-CCA --AU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GU -UA--CAAAG GGU-A-G-C- UA-AAG-C(G 2881 -UAA)GCUUC ---------- UG-GCGAA-U CUCAA-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UGG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CUUGA- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------UC AAGAAG-G-A G-CC-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UNNCCC-UAC C(GGA-A)GG UGGGGA--UG GAUCACCUCC 3361 UUUC|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.4 ACHOLEPLASMA_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.4 ACHOLEPLASMA_ASSEMBLAGE. ORGANISM 2.16.9.1.4 ACHOLEPLASMA_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.spJ233 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma sp. str. J-233. ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma sp. str. J-233. ORGANISM Acholeplasma sp. REFERENCE 1 AUTHORS Gundersen,D.E., Lee,I.M., Rehner,S.A., Davis,R.E. and Kingsbury,D.T. TITLE Phylogeny of mycoplasmalike organisms (phytoplasmas): a basis for their classification JOURNAL J. Bacteriol. 176, 5244-5254 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L33734|g537897 (bases 45 to 1457) isolate_name= J-233 BASE COUNT 411 a 273 c 416 g 313 t 2963 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... ........A- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCCU---A -AGAC-G-AG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAGACU-GG 481 AU-AGG---- ---------- -------A-G UA-U--U-U- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- GA-AU----A CU-UUAAA-- ---AGACC-- ---------- 601 --(------- ---UUUG--- ---)------ ---------| --GGUA--U- G--CUU---- 661 ----AGGG-- AGG---G-|G CCUGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GAA A)-CCC-UGA ACGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U AC(--UU-CG --)GU-ACGU AAA--GUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUGG-CU --GGU-G--( -----GAAA- ---------) --AA-CC-AG 1081 ---------- -------A-A U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 A-UA-AUG|U CUG---AGGU A-UAA-GU-G CA-GUG-C(- UC-A)A-CGC -UG-U-GA-- 1321 -UGCU-UUAG A-AAC-UGAU A-GGCUA-GA GUG-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA--CG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUC AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG ---------- ---------- 1681 -(AGA-AA)U ---------- ---------- ---------- ---------- --UCAG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AGGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|C-- ---------- ---UCUG--- CAA----GUC 1981 -UAU-A--(- GAGA-)-UAU -A-GAG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GA -AA--CAAAG GGA-A-G-C- GA-AAG-A(G 2881 -UGA)UCUG- ---------- GA-GCGAA-A CCCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AA)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-CAG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-UU A-AGGU-AGG GUU-GA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGA-A)GG UGGGGA--UG GAU....... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.oculi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma oculi. ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma oculi. ORGANISM Acholeplasma oculi. REFERENCE 1 AUTHORS Artiushin,S.C., Duvall,M. and Minion,F.C. TITLE Phylogenetic analysis of mycoplasma strain ISM1499 and its assignment to the Acholeplasma oculi strain cluster JOURNAL Int. J. Syst. Bacteriol. 45, 104-109 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14906|g595821 BASE COUNT 423 a 305 c 427 g 335 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-A C-CUAA---A -ACUC-G-AG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -UGGU-G--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-U GU-A--A-G- ---GAU-(-- --------GA 541 UU-------- -)-UUC---- -U-UA----C AU-UUAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UUAG-- AGG---G-|G UCUGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGCU C---UA-A-- CGCCC|C-AC -AUUGGGUGA 841 (CUGA-GA-- ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GGG(GAA A)-CCC-UGA CCGA|-CCAA CACC-GC-GU 961 G-A-AC-G-A A-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAC-- GA-AAAA-A- ---------( -----UCAA- ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 A-AU-AAG|U UUC---UGGU G-UAA-GU-G CA-GUG-C(- UC-A)A-CGC -UG-U-GA-- 1321 -UGCU-AGGA A-AAC-UGUU U-AGCUA-GA GUG-----AG A-CAGAGGCA AUG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -CC------- ---------- 1681 -(CUC-AG)- ---------- ---------- ---------- ---------G -GUCAGUGCC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----UGG 1981 -CUU-A--(- GAAA-)-UAA -G-UUCG--- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AU-GUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)CCCCGC AA-------- CGAG-C--GC AACCC-UU-A |AUU--GCU- 2281 AG--UUAC-C AU-CAA---- ---------- ---------- ---U(---AA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UGG|G 2701 G-GA-CU-C- U-AGCGAAGA C-UU-G-CCA --GC(UGA-U AA)-AUU-GG -GAGGGA-AG 2761 GGUGAGGGGA UG-ACCUC-C -A-AAUC-AU AUC-G-CC-C CUUAU-G-AC -CUC-GGGCC 2821 AACCA-AA-C GUG--AUACA AUGCC-U-GA -UA--CAAAG AGA-A-G-C- GA-UGG-G(G 2881 -UGA)CCCG- ---------- GA-GCGAA-U CUCAU-AAAA -GC-A-GUC- UUAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GAG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUU-CA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.oculi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma oculi str. 19L ATCC 27350 (T). ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma oculi str. 19L ATCC 27350 (T). ORGANISM Acholeplasma oculi. REFERENCE 1 AUTHORS Artiushin,S.C., Duvall,M. and Minion,F.C. TITLE Phylogenetic analysis of mycoplasma strain ISM1499 and its assignment to the Acholeplasma oculi strain cluster JOURNAL Int. J. Syst. Bacteriol. 45, 104-109 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27350 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14904|g595819 ATCC 27350 (T) = NCTC 10150 isolate_name= 19L BASE COUNT 408 a 311 c 420 g 351 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 CCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CC-AC (--UU----- ---------- ---------- 241 --------CG -)GU-GG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -ACGUACGA- UAA--CCU-G CCCUAA---A -ACUC-G-AG 421 -GAU-AA-CA C--------- ------CGG- G(-GAAA-)C -UGGU-G--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-U GU-U--A-G- ---GAU-(-- --------GA 541 UU-------- -)-UUC---- -U-UA----C AU-UUAAA-- ---GA----- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UUAG-- AGG---G-|G UCUUUC---- -GG|----CG C--AUUA-G- UUA-G--UUU 721 GG-UG-GG-( GU-AAA-GG) -C-CUCCC-A A|CACC-GA- UGA------- -----UG-CG 781 UUGGCC-CG| -GCUUU--(G -AGA)-GGUC --UUUU-U-- CGG-C|C-AC -AUUGG-GGA 841 (CUGA-GA-A CUG)U-GCCC -AAA-C-UCC U(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU C-GCCAAAUU GG-GG-(GAA A)-CCC-UGA CCGA|-CCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U UC(--UU-CG --)GA-AUGU AAG--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AAAA-C- ---------( -----UCAA- ---------) ---------A 1081 ---------- -------A-U U-GG-CGGU- A-CCA-U-AU G-AA--UAAC ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCACC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 A-AC-AAG|U UUC---UGGU G-UAA-GU-G CA-GUG-C(- UC-A)A-CGC -UG-U-GA-- 1321 -UGCU-AGGA A-AAC-UGUU U-AGCUA-GA GUG-----AG A-CA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGA-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -CC------- ---------- 1681 -(CUC-AG)- ---------- ---------- ---------- ---------G -GUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----UGG 1981 -CUU-A--(- GAAA-)-UAA -G-UUCG--- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AU-GUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCU- 2281 AG--UUAC-C AU-CAA---- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GG(UGA-U AA)-AUU-UG -GAGG-A-AG 2761 G-UG-GGG-A UG-ACCG-UC -A-AUCA-AU CAU-C-CC-C CUUAU-G-AC -CU--GGCC- 2821 U-CCA-AA-C GUG--AUACA AUGUC-U-GA -UACCAAAAG AGA-A-G-C- GA-UGG-G(U 2881 -UGA)CCCG- ---------- GA-GCGAA-U CUCAU-AAAG -UC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GAG- CA-AU-ACCC -AAA-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A C-CC-GU-CU A-AGGU-AGG GUU-CA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAACC-GUA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.laidl2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma laidlawii str. PG8 ATCC 23206 (T). ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma laidlawii str. PG8 ATCC 23206 (T). ORGANISM Acholeplasma laidlawii. REFERENCE 1 AUTHORS Artiushin,S.C., Duvall,M. and Minion,F.C. TITLE Phylogenetic analysis of mycoplasma strain ISM1499 and its assignment to the Acholeplasma oculi strain cluster JOURNAL Int. J. Syst. Bacteriol. 45, 104-109 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23206 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U14905|g595820 ATCC 23206 (T) = NCTC 10116 isolate_name= PG8 BASE COUNT 431 a 298 c 421 g 326 t 2900 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-A C-CUUU---A -ACUC-G-AG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-U GU-G--U-G- ---CAU-(-- --------GA 541 AA-------- -)-AAA---- -A-CA----C AU-UUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- AGG---G-|G UCUGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-GA-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----UA-C-- CGGCC|C-AC -AUUGG-G-A 841 (CUGA-GA-- ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GUAA 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-CCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AAAA-U- ---------( -----UGAA- ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 U-AA-AAG|U UUG---UGGU G-UAA-GU-G CA-GUG-C(- UU-A)A-CGC -UG-U-GA-- 1321 -GGCU-AUGA A-AAC-UAUA U-AACUA-GA GUG-----AG A-CA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GU(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -GC------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------G -GUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGGGAUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)A-CGAAAA 1921 A-CCUUA-CC AGG-UCUUUG ACA-UA|--- ---------C ---UCUG--- CAA----AAG 1981 GCUU-A--(- GAAA-)-UAA -G-UCCG--- ---------- ---------- --(---GAGG 2041 CUUA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AU-GUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-GAAC -CU--GGGC- 2821 U-ACCAAA-C GUG--AUACA AUGGC-U-GG -AA--CAAAG AGA-A-G-C- GA-UAG-G(G 2881 -UGA)CCUG- ---------- GA-GCGAA-A CUCAC-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 CC-AAA-(UC -AGC-AU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GGG- CA-AU-ACCC -AAC-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUC-CA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAACCC-UA. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.laidla 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma laidlawii str. JA1. ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma laidlawii str. JA1. ORGANISM Acholeplasma laidlawii. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23932|g141814 isolate_name= JA1 BASE COUNT 432 a 303 c 433 g 339 t 2869 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUAUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GCA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UGC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-A C-CUUU---A -ACUC-G-AG 421 -GAU-AA-CU C--------- ------CG-- G(-GAAA-)C -UGGA-G--C UAAUACU-GG 481 AU-AGG---- ---------- -------A-U GU-G--U-G- ---CAU-(-- --------GA 541 AA-------- -)-AAA---- -A-CA----C AU-UUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--GUU---- 661 ----UAAG-- AGG---G-|G UCUGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAG-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----NU-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUC ----UA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-- ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A C-GAA--G-U AC(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AAAA-U- ---------( -----UAAA- ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-UA- 1261 U-AA-AAG|U UUG---UGGU G-UAA-GU-G CA-GUG-C(- UU-A)A-CGC -UG-U-GA-- 1321 -GGCU-AUGA A-AAC-UAUA U-AACUA-GA GUG-----AG A-CA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -CC------- ---------- 1681 -(-AU-AA)- ---------- ---------- ---------- ---------G -GUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- UUAA-GUUCU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C A)--CGAAAA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCUG--- CAA----AGG 1981 -CUU-A--(- GAAA-)-UAA -G-UUCG--- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AU-GUA |---C|A--G 2161 GU-GG-UGCA CG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GG -AA--CAAAG AGA-A-G-C- GA-UAG-G(G 2881 -UGA)CCUG- ---------- GA-GCGAA-A CUCAC-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGC-AU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-GGG- CA-AU-ACCC -AAC-G-CCG 3121 G-UGG-C-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUC-CA-UG- AUU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(GGA-A)CG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.feliminu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma feliminutum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma feliminutum. ORGANISM Mycoplasma feliminutum. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16758|g567067 nat_host= Felis catus BASE COUNT 436 a 277 c 396 g 350 t 2917 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -UAAC-GC-- UGGC-GGU-A -CGU-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----A AU---UUUAA A--------- ---------- ---------- ---------- 181 ---------- ---------- -----UU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-AA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- GAUAAA---- AUU|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--UCU-G C-CUUU---A -AGUU-G-GG 421 -GAU-AA-CU U--------- ------UC-- G(-GAAA-)C -GAAU-G--C UAAUACC-GA 481 AU-AAUC--- ---------- -------U-G UG-A--A-A- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UU-UC----A UU-GUAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAU--C- G--CUU---- 661 ----AAAG-- AGG---A-|G CCUGC----- -GG|----UG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GAC-AA- UGA------- -----UG-CA 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CAG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-- ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GAG-AAUCUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCGA UACC-GC-GU 961 G-A-AU-G-A U-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--AUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-ACGA-UA --UUU-GUA( G----GAAA- -----U---) GACA-AA-UA 1081 ---------- -------A-G U-GA-CGUU- A-CCU-A-AU G-AA--UAAG ---------U 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGA-C-- 1201 AAG-CGUUAU CC-GGAUUAA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-UU-AAG|U UUG---GGGU U-UAA-UU-U CA-UGG-C(- UC-A)A-CCA -UG-U-CC-- 1321 -CGCU-CCAA A-AAC-UGGA A-GACUA-GA GCA-----AG A-UA-GAGGU AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UU-UG CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -CU-GU-CUG -G-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -CUAGG-CGG 1741 UA--AA---- --GU-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-AAAACUC -AAA-GGAAU UG-GCGGG-A -C-C-UC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(ACGAUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCGG--- CAA----UAC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AU-GUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-- C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACUC-UU-A |-UU--GCU- 2281 AU--UUGC-C AG-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-AA-CU-A- U-AGU-GA-G A-CU-G-CCA --GU(-GA-C AA)-ACU-G- -GAGG-A-AG 2761 G-UA-GGA-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGU-U-GA -UA--CAAAG GGA-A-G-C- CA-AAG-C(G 2881 -UGA)GCUG- ---------- GA-GCAAA-U CCCAG-AAAA -AC-A-AUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AC)-G UUG-CGGUG- AAUAC-GUU- CUC-GAG-GU UUGCA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UUA- UA-AU-ACCC -AAA-A-CCG 3121 G-UGG-U-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUA-AA-UG- AUU-GGGG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.modicu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma modicum str. PG 49 ATCC 29102. ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma modicum str. PG 49 ATCC 29102. ORGANISM Acholeplasma modicum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29102 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23933 ATCC 29102 = NCTC 1013 isolate_name= PG 49 BASE COUNT 419 a 289 c 424 g 331 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCUN---G -AAUU-U-GG 421 -AAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GAUU-G--C UAAUACY-RA 481 AU-AGG---- ---------- -------U-A AU-A--A-U- ---CCG-(-- --------GC 541 AU-------- -)-CGG---- AA-UA----U UA-UUAAA-- ---GAUCC-- ---------- 601 --(------- --AAUCAA-- ---)------ ---------| --GGAU--C- G--UUC---- 661 ----UAGG-- AGG---G-|G CCUGC----- -GU|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-UG- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UNC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCNAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A C-GAA--G-C UC(--UUUUU --)GA-GUGU AAA--AUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUGA-CA --UAU-AAA( G----GAAA- -----U---) AGUA-UA-UG 1081 ---------- -------U-G U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGYA-A) U-A-C-AUAG |-GGGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GU-AA- 1261 A-UU-AAG|U UUG---GGGU U-UAA-AC-A CA-GUG-C(- UC-A)A-CGC -UG-U-GG-- 1321 -CGCU-UCAA A-AAC-UGAU U-UACUA-GA GUU-----AG A-CA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UG-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -A-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -UUCGG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUG-C---(G CAA)---G-C AU-GAAACUC -AAA-GGAAU UG-ACGGG-A -C-C-CN--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GU-UGU -UUAAUU-CG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---CCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAC------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGU AA-------- CGAG-C--GC AACCC-UC-G |-UU--GCU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-U AA)-ACU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--AUACA AUGGC-U-GG -AA--CAAAA GGA-A-G-C- GA-AGG-A(G 2881 -CGA)UCUG- ---------- GA-GCAAA-A CCUCU-AAAA -AC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGA-AC)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-GU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAA A--GU-UAA- CA-AU-ACCC -AAA-A-CCG 3121 G-UGG-C-CU -AA-CCA--- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- UGGAGG-G-A G-CC-GU-CU A-AGGU-AGG GUU-GA-UG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acp.axant2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acholeplasma axanthum str. S-743. ACCESSION No information KEYWORDS No information. SOURCE Acholeplasma axanthum str. S-743. ORGANISM Acholeplasma axanthum. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04657|g440218 isolate_name= S-743 BASE COUNT 163 a 94 c 164 g 124 t 3831 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GC-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-C AC(--UU-AG --)GU-GCGU AAA--AUUC| UUUU-AU-UA 1021 --GG-GAA-- GA-AUAG-CU --AGU-AUA( G----GAAA- -----U---) GAUA-UU-AG 1081 ---------- -------U-G U-GA-CGGU- A-CCU-A-AU G-AA--UAAG ---------C 1141 -CCCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GAG-UAG-GC -G|-GC-UA- 1261 C-UU-AAG|U UUG---AGGU A-UAA-GC-A CA-GUG-C(- UU-A)A-CGC -UG-U-GA-- 1321 -GGCU-UUGA A-AAC-UGGG U-AGCUA-GA GUU-----AG A-UA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -A-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -UUCGG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- WUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anp.abacto 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaeroplasma abactoclasticum str. 6-1 ATCC 27879. ACCESSION No information KEYWORDS No information. SOURCE Anaeroplasma abactoclasticum str. 6-1 ATCC 27879. ORGANISM Anaeroplasma abactoclasticum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27879 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M25050 isolate_name= 6-1 BASE COUNT 424 a 291 c 417 g 316 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNUUAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAU 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|AAC--- CAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- CAA--CCU-G U-CUUU---A -AGAC-G-AG 421 -GAU-AA-CC G--------- ------UU-- G(-GAAA-)C -GACG-G--A UAAUACU-GG 481 AU-AGG---- ---------- -------A-C AU-C--ACAA ---AGG-(-- --------GC 541 AU-------- -)-CCU---- UA-GA----U GU-UUAAA-- ---GGU---- ---------- 601 --(------- --UAUUAU-- ---)------ ---------| ----GC--C- A--CUU---- 661 ----AGAG-- AGG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AAC-AG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-- ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U UA(--UU-CG --)UA-AUGU AAA--GUUC| UUUU-AU-CU 1021 --GG-GAA-- GA-AAAA--- ---------( -----ACAA- ---------) ---------- 1081 ---------- -------A-U U-GA-CUGU- A-CCA-G-AU G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-CAG-AU -G|-GC-AC- 1261 A-UU-AAG|U UUC---UUGU A-AAA-AU-G CU-GGG-C(- UC-A)A-CCC -AG-U-AG-- 1321 -AGCA-AGAG A-UAC-UGAU G-AGCUA-GA GUA-----CG A-GA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGCAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 CUC--GA-UA CUGACA-UUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GC-UGG -GA------- ---------- 1681 -(-GG-AA)- ---------- ---------- ---------- ---------U -CUCGG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-UGU -UUAAUU-CG -(ACGNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UCUG--- CGA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAG------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UA--UCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-UA-G A-CU-G-CCA --UU(-GA-U AA)-AAU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-U-GA -AA--CAAAG AGA-A-G-C- GA-AGC-G(G 2881 -UGA)CGUG- ---------- GA-GCUAA-C CUCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anp.interm 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaeroplasma intermedium str. 5LA. ACCESSION No information KEYWORDS No information. SOURCE Anaeroplasma intermedium str. 5LA. ORGANISM Anaeroplasma intermedium. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1993) STANDARD No information COMMENTS isolate_name= 5LA BASE COUNT 367 a 247 c 366 g 281 t 3115 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAU 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------A (--GC----- ---------- ---------- 241 --------AA -)U------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G U-CUUU---A -AGAC-G-AG 421 -GAU-AA-CC G--------- ------AU-- G(-GAAA-)C -GUCG-G--A UAAUACU-CG 481 AU-AGG---- ---------- -------U-G AU-U--U-G- ---AAG-(-- --------GC 541 AU-------- -)-CUU---- UG-GA----U CA-UUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUU---- 661 ----AGAG-- AGG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---AU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A U|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-- ACG)--GCCN -AUN-C-UCC -(NACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-CG 1021 --GG-GAA-- GA-AAAA-U- ---------( -----NACCA ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -UCCG..... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... ....U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACA-UUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -U-------- ---------- 1681 -(GAG-AA)- ---------- ---------- ---------- ---------- -AUCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-UGU -UUAAUU-CG -(ACGNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---UAUU--- GUU----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(----AGA 2041 UU-------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GAU-AG-AGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UN-A |-UU--UCU- 2281 AG--UUAC-C AG-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCA --GC(-GA-U AA)-GNU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UAUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-U-GA -AA--CAAAG AGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-C CUCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anp.bactoc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaeroplasma bactoclasticum str. JR ATCC 27112. ACCESSION No information KEYWORDS No information. SOURCE Anaeroplasma bactoclasticum str. JR ATCC 27112. ORGANISM Anaeroplasma bactoclasticum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27112 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M25049 isolate_name= JR BASE COUNT 407 a 278 c 409 g 327 t 2955 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAU 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------A (--GC----- ---------- ---------- 241 --------AA -)U------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G U-CUUU---A -AGAC-G-AG 421 -GAU-AA-CC G--------- ------AU-- G(-GAAA-)C -GUCG-G--A UAAUACU-CG 481 AU-AGG---- ---------- -------U-G AU-U--U-G- ---ARG-(-- --------GC 541 AU-------- -)-CYU---- UG-RA----U CA-UUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUU---- 661 ----AGAG-- AGG---G-|G CCUNC----- -GG|----CG C--AUUA-G- CUA-G---AU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A U|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-- ACG)--GUCC -AUN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-UG 1021 --GG-GAA-- GA-AAAA-U- ---------( -----AUCCA ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCC-A-AU G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-AU -G|-GC-AA- 1261 U-GU-AAG|U CUU---GUGU A-AAA-UU-G UU-GGG-C(- UC-A)A-CCC -AA-U-AG-- 1321 -GGCA-CAAG A-UAC-UGCA U-AGCUC-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACA-UUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--N 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -U-------- ---------- 1681 -(GAU-AA)- ---------- ---------- ---------- ---------- -AUCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-UGU -UUAAUU-CG -(ACGNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---AGGU--- GUU----AGU 1981 -UAU-A--(- GAGA-)-UAU -A-NCG---- ---------- ---------- --(----AGA 2041 UU-------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GCC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-UU-N |-UU--UCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C UUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-U-GA -AA--CAAAG AGA-A-G-C- GA-AGC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-C CUCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Anp.varium 4376 bp RNA RNA 02-JUL-1998 DEFINITION Anaeroplasma varium str. A-2 ATCC 43167 (T). ACCESSION No information KEYWORDS No information. SOURCE Anaeroplasma varium str. A-2 ATCC 43167 (T). ORGANISM Anaeroplasma varium. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woesse,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43167 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23934 isolate_name= A-2 BASE COUNT 414 a 281 c 409 g 323 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NUUUUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAU 121 G--GU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---------A (--GC----- ---------- ---------- 241 --------AA -)U------- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AC--- CAUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G U-CUUU---A -AGAC-G-AG 421 -GAU-AA-CC G--------- ------NU-- G(-GAAA-)C -GACG-G--A UAAUACU-CG 481 AU-AGG---- ---------- -------U-G AU-U--U-N- ---AGG-(-- --------GC 541 AU-------- -)-CCU---- UR-GA----U CA-UUAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUU---- 661 ----AGAG-- AGG---G-|G CCUGC----- -GG|----CG C--AUUA-G- CUA-G---AU 721 GG-CG-GU-( GU-AAU-GG) -A-CCACC-A U|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-- ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A A-GAA--G-U AU(--UU-CG --)GU-AUGU AAA--GUUC| UUUU-AU-CG 1021 --GG-GAA-- GA-AAAA-U- ---------( -----AAUCA ---------) ---------A 1081 ---------- -------A-U U-GA-CGGU- A-CCU-G-AU G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-AU -G|-GC-AA- 1261 U-GU-AAG|U CUU---AUGU A-AAA-UU-G UU-GGG-C(- UC-A)A-CCC -AA-U-AG-- 1321 -GGCA-UAAG A-UAC-UGCA U-AGCUC-GA GUA-----CU G-GA-GAGGC AAG-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AAAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 CCA--GA-UA CUGACA-UUG AG-G------ -------CA- C-GAAA-GC- GU-NGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -U-------- ---------- 1681 -(GAU-AA)- ---------- ---------- ---------- ---------- -AUCAG-UGC 1741 UG--AA---- --GU-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUA-C---(G CAA)---G-U AU-GAAACUU -AAA-GGAAU UG-ACGGG-A -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-UGU -UUAAUU-CG -(ACGNUA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------U ---AGGU--- GUU----AGU 1981 -UAU-A--(- GAGA-)-UAU -A-NCG---- ---------- ---------- --(----AGA 2041 UU-------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GCC-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--UCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---CA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCA --GU(-GA-U AA)-AUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -CU--GGGC- 2821 U-ACA-AA-C GUG--CUACA AUGGC-U-GA -AA--CAAAG AGA-A-G-C- GA-AAU-C(G 2881 -CGA)GAUG- ---------- GA-GCAAA-C CUCAU-AAAA -GC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CU UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-C----- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-G-A G-CC-GU-CU A-AGGU-AGG ACA-GA-UG- AUC-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.5 C.RAMOSUM_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.5 C.RAMOSUM_ASSEMBLAGE. ORGANISM 2.16.9.1.5 C.RAMOSUM_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ramosum2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium ramosum str. 113-I ATCC 25582. ACCESSION No information KEYWORDS No information. SOURCE Clostridium ramosum str. 113-I ATCC 25582. ORGANISM Clostridium ramosum. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25582 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73440|g437763 (bases 8 to 1526) ATCC 25582 = DSM 1402 (T) = VPI 0427 (T) isolate_name= 113-I BASE COUNT 421 a 330 c 462 g 306 t 2857 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CA (--CU----- ---------- ---------- 241 --------UG -)UG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- UAA--CCU-G C-CCUA---G -ACAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C GGAUA-G--C UAAGACC-GC 481 AU-AGG---- ---------- -------U-A CG-G--A-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GA-CC----G UA-UUAAA-- ---AGUGC-- ---------- 601 --(------- --CUCAAA-- ---)------ ---------| --GCAC--U- G--GUA---- 661 ----GAGG-- AUG---G-|A CUUAU----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UGUU-AU-AA 1021 --AG--AA-- GA-ACGG-CG --GCU-ACA( G----GAAA- -----U---) GGUA-GC-CG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-UAUU UUAG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GC-AG- 1261 C-AA-GGG|U CUG---UGGU G-AAA-GC-C UG-AAG-C(- UU-A)A-CUU -CA-G-UA-- 1321 -AGCC-AUAG A-AAC-CAGG C-AGCUA-GA GUG-----CA G-GA-GAGGA UCG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CGAUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUC AG-U------ -------CC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -AU------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------G -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCAU--- AAA----GGC 1981 -UCC-A--(- GAGA-)-UGG -A-GAG---- ---------- ---------- --(---AUAG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUG-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UG--CAGAG GGA-A-G-C- GA-A-C-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-A CCCAUAAAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGA- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GU-CU A-AGGU-GGG AUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ramosum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium ramosum str. 113-I ATCC 25582. ACCESSION No information KEYWORDS No information. SOURCE Clostridium ramosum str. 113-I ATCC 25582. ORGANISM Clostridium ramosum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25582 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23731 ATCC 25582 = DSM 1402 (T) = VPI 0427 (T) isolate_name= 113-I BASE COUNT 421 a 329 c 454 g 304 t 2868 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~ACAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CN----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CA (--CU----- ---------- ---------- 241 --------UG -)UG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|UCG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- UAA--CCU-G C-CCUA---G -ACAG-G-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -GAUA-G--C UAAGACC-GC 481 AU-AGG---- ---------- -------U-A CG-G--A-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GA-CC----G UA-UUAAA-- ---AGUGC-- ---------- 601 --(------- --CUCAAA-- ---)------ ---------| --GCAC--U- G--GUA---- 661 ----GAGG-- AUG---G-|A CUUAU----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UGUU-AU-AA 1021 --AG-GAA-- GA-ACGG-CG --GCU-ACA( G----GAAA- -----U---) GGUA-GC-CG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-U-AU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GC-AG- 1261 C-AA-GGG|U CUG---UGGU G-AAA-GC-C UG-AAG-C(- UU-A)A-CUU -CA-G-UA-- 1321 -AGCC-AUAG A-AAC-CAGG C-AGCUA-GA GUG-----CA G-GA-GAGGA UCG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CGAUCUG-- ---------- ---------- ---------G 1501 CCU--GC-AA CUGACG-CUC AG-U------ -------CC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -AU------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------G -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---UCAU--- AAA----GGC 1981 -UCC-A--(- GAGA-)-UGG -A-GAG---- ---------- ---------- --(---AUAG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUG-AG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -UG--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-A CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GNG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGA- UA-AC-ACCC -GAA-G-CNG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-A G-CU-GU-CU A-AGGU-GGG AUU-GA-UG- AUN-GGGG.. 3301 .......... GUAA-CAAGG UAUCCC-UAC G(G-A-A)CG .......... GAUCACCUCC 3361 UUUC|W~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spirofo2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium spiroforme. ACCESSION No information KEYWORDS No information. SOURCE Clostridium spiroforme. ORGANISM Clostridium spiroforme. REFERENCE 1 AUTHORS Wang,R.F., Cao,W.W., Franklin,W. and Cerniglia,C.E. TITLE Amplification and sequencing of 16S rRNA gene for 3 species of clostridium and phylogenetic analysis of the relationship JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75908|g458491 Former RDP Sids: C.spirof_M ATCC 29900 (T) = VPI C28-23-1A = NCTC 11211 = DSM 1552 (T) NB: earlier sequence is NCBI gi: 443840 BASE COUNT 386 a 300 c 428 g 274 t 2988 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GA-- 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- UAA--CCU-G C-CCUA---G -ACAG-G-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGCA-G--C UAAGACC-GC 481 AU-AGG---- ---------- -------U-A UG-G--A-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GA-CC----A UA-UUAAA-- ---A-UGC-- ---------- 601 --(------- --CAAG---- ---)------ ---------| --GCAC--U- G--GUA---- 661 ----GAGG-- AUG---G-|A CUUAU----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G AA(--UU-CG --)UU-CUGU AAA--CUUC| UGUU-AU-AA 1021 --AG-GAA-- GA-ACGG-CG --GAU-AUA( G----GGAA- -----U---) GAUA-UC-CG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-U-AU G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GC-GG- 1261 C-AG-AGG|U CUG---UGGU G-AAA-GA-C UG-AAG-C(- UU-A)A-CUU -CA-G-UA-- 1321 -AGCC-AUAG A-AAC-CGGG C-UGCUA-GA GUG-----CA G-GA-GAGGA UCG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CGGUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CAC AU-U------ -------CC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -GA------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------U -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---GGAU--- AAA----GAC 1981 -CUC-G-A(- GAGA-)-UGA -G-GGG---- ---------- ---------- --(---AUAG 2041 AUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUC-CG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AG--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-A CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UG.. .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spirofor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium spiroforme. ACCESSION No information KEYWORDS No information. SOURCE Clostridium spiroforme. ORGANISM Clostridium spiroforme. REFERENCE 1 AUTHORS Lawson,P.A., Llop-Perez,P., Hutson,R.A., Hippe,H. and Collins,M.D. TITLE Towards a phylogeny of the clostridia based on 16S rRNA sequences JOURNAL FEMS Microbiol. Lett. 113, 87-92 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X73441|g437768 (bases 8 to 1519) DSM 1552 (T) = VPI C28-23-1A = ATCC 29900 (T) = NCTC 11211 BASE COUNT 416 a 326 c 467 g 302 t 2865 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-- -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- UAA--CCU-G C-CCUA---G -ACAG-G-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C ---CA-G--C UAAGACC-GC 481 AU-AGG---- ---------- -------U-A UG-G--A-C- ---ACU-(-- --------GC 541 AU-------- -)-GGU---- GA-CC----A UA-UUAAA-- ---AGUGC-- ---------- 601 --(------- --CAAG---- ---)------ ---------| --GCAC--U- G--GUA---- 661 ----GAGG-- AUG---G-|A CUUAU----- -GG|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GGA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G AA(--UU-CG --)UU-CUGU AAA--CUUC| UGUU-AU-AA 1021 --AG-GAA-- GA-ACGG-CG --GAU-AUA( G----GGAA- -----U---) GAUA-UC-CG 1081 ---------- -------A-G U-GA-CGGU- A-CUU-U-AU G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GC-GG- 1261 C-AG-AGG|U CUG---UGGU G-AAA-GA-C UG-AAG-C(- UU-A)BACUU -CA-G-UA-- 1321 -AGCC-AUAG A-AAC-CGGG C-UGCUA-GA GUG-----CA G-GA-GAGGA UCG-U|GGAA 1381 UU-CC-UGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CGGUCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUC AU-U------ -------CC- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -GA------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------U -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---GGAU--- AAA----GAC 1981 -CUC-A--(- GAGA-)-UGA -G-GGG---- ---------- ---------- --(---AUAG 2041 AUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUC-CG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCA --GU(-GA-C AA)-GCU-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-U-GG -AG--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- AA-GCAAA-A CCCAU-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UA-AC-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-CU-GU-CU A-AGGU-GGG AUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.catenafo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus catenaformis str. 1871 ATCC 25536. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus catenaformis str. 1871 ATCC 25536. ORGANISM Lactobacillus catenaformis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25536 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23729 ATCC 25536 = DSM 20559 (T) isolate_name= 1871 NB: The genus name should have brackets around it this is incorrectly named seq doesnot match M23729 NID: g175044 by 35 bp at 3' end BASE COUNT 366 a 364 c 514 g 249 t 2883 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAGAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GGN---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-CC (--AU----- ---------- ---------- 241 --------UA -)GG-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGG---AGC -AC-AUGGG- GAA--CCU-G C-CCGU---C -AGAG-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAGACC-GC 481 AU-AGG---- ---------- -------C-U CA-A--G-G- ---AGG-(-- --------GC 541 AU-------- -)-CCU---- CG-UU----G AG-UUAAAG- ---UGUCCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGGAC--A- G--CUG---- 661 ----ACGG-- AUG---G-|A CCUGU----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GN-C ACG)--GCCN -NGA-C-UCC -(UGCG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GNA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G CC(--UU-CG --)GG-CUGU AAA--GCUC| UGUU-GC-AG 1021 --AG-GAA-- GA-ACGG-GA --GAG-CGA( G----GAAA- -----U---) GCGC-UU-UU 1081 ---------- -------C-G U-GA-CGGU- A-CUC-U-GC G-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GN-AC- 1261 G-CG-AAG|G UCC---GUAG U-AAA-NN-N NG-AAG-C(- UA-A)A-CUU -CG-G-GCG- 1321 -GCUA-UGGA A-ACC-GCGN C-GCCUG-GA GUG-----CG G-AA-GAGGA ACU-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CGGUCUG-- ---------- ---------- ---------G 1501 UCC--GG-CA CUGACG-CUC AG-N------ -------NN- N-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUCG A--UA-CC-- -------A|G -GU-GU-CGG -GA------- ---------- 1681 -(GUC-AC)A ---------- ---------- ---------- ---------U -CCCGG-UGC 1741 CG--AA---- --GC-(CAA- ---C)G-CA- UUAA-GUAUC G|C|G-CCU- G-AGUAGUAC 1801 GUC-C---(G CAA)---G-G AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------G ---AUCC--- -GA----UCG 1981 -CGC-G--(- GAGA-)-CGC -G-CGAGA-- ---------- CCUUGCC--- --(GA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGGAAGGA-- ---------| GGA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--GCC- 2281 AG--UUGC-C AG-CAU---- ---------- ---------- ----(---UC ---AGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-GA-CU-C- U-GGC-GG-G A-CU-G-CCC --CU(-G--U AA)-GGG-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -AG--CAGAG GGA-G-G-C- GA-AGC-C(G 2881 -CGA)GGCG- ---------- GA-GCGGA-G CCCAG-AAAC -CC-G-UUC- ACAGUUCGGA 2941 C-UGCAGCC- (UGCAAC-U- C)-GGCUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-GCCC -GAA-G-NCG 3121 G-CGG-C-CC -AA-CCCC-- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G GGGAGG-G-A G-CA-GU-CA A-AGGC-NGG GCA-NA-UG- AUU-GG.... 3301 .......... GUAA-CAAG. .......... .(.....).. .......... GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS L.vitulinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Lactobacillus vitulinus str. 185 ATCC 27783. ACCESSION No information KEYWORDS No information. SOURCE Lactobacillus vitulinus str. 185 ATCC 27783. ORGANISM Lactobacillus vitulinus. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27783 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23727 ATCC 27783 = JCM 8228 = DSM 20405 (T) isolate_name= 185 NB: The genus name should have brackets around it this is incorrectly named BASE COUNT 367 a 353 c 478 g 257 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AA-UC (--UU----- ---------- ---------- 241 --------CG -)GA-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGG---AAU -AC-AUAGG- UAA--CCU-G C-CNCU---C -CGAG-G-GG 421 -GAC-AA-CA G--------- ------AC-- G(-GAAA-)C -AUCU-G--C UAAGACC-GC 481 AU-AGC---- ---------- -------A-N CA-G--G-G- ---AAG-(-- --------GC 541 AU-------- -)-CUN---- CC-CU----G UG-CCAAA-- ---UGUCCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGGAC--A- G--CGG---- 661 ----GGGG-- AUG---G-|A CCUAU----- -GC|----CG C--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GC-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GUUC| UGUU-GC-GA 1021 --AG-GAA-- GA-ACGC-CG --GUG-UCA( G----GAAA- -----U---) GGGC-GC-CG 1081 ---------- -------G-G U-GA-CGGU- N-CUU-C-GC AUAG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GAGG- GAG-CAG-GC -G|-GC-GA- 1261 U-AC-AGG|U CUG---UGGU G-AAA-UU-C CG-AAG-C(- UA-A)A-CUU -CG-G-NCC- 1321 -AGCC-AAAG A-AAC-CGGA U-CGCUA-GA GUG-----CG G-AA-GAGGA UCG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CGGUCUG-- ---------- ---------- ---------G 1501 GCC--GN-AA CUGACG-CUC AU-U------ -------CC- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUCG A--UA-CU-- -------A|A -GU-GU-CGG -GG------- ---------- 1681 -(GUC-AA)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 UG--GA---- --GU-(CAA- ---C)G-CA- AUAA-GUAUC G|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---AUCC--- AAA----AGG 1981 -GAC-G--(- GAGA-)-CGU -C-CCN---- ---------- ---------- --(---AUAG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GGA-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--GCC- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGC-GA-G A-CU-G-CCU --CU(-G--C AA)-GGA-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGA-C-GG -AG--CAGAG GGA-A-G-C- GA-AGC-G(G 2881 -CGA)CGCC- ---------- AA-GCGGA-U CCCAG-AAAC -CC-G-UUC- UCAGUUCGGA 2941 C-UGCAGUC- (UGCAAC-U- C)-GACUGCA -CGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-CGG- CA-AC-GCCC -GAA-G-CCG 3121 G-UGG-C-UC -AA-CCC--- ---------- ---------- -----(---- -UUCU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-G-A G-CU-GU-CN N-AGGU-GGG GCC-NA-UG- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ast.anaero 4376 bp RNA RNA 02-JUL-1998 DEFINITION Asteroleplasma anaerobium str. 161 ATCC 27880. ACCESSION No information KEYWORDS No information. SOURCE Asteroleplasma anaerobium str. 161 ATCC 27880. ORGANISM Asteroleplasma anaerobium. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27880 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22351 isolate_name= 161 BASE COUNT 363 a 359 c 455 g 281 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NAAAUUUG AGAGUU(C-G A)U-CCU|-G 61 GCUCAG-GAU -NAAN-GC-- CGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-UC (--UU----- ---------- ---------- 241 --------CG -)GA-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|CCC--- AGUG-GCGU- 361 -A-CG-GG-U GAGU---AAC -AC-GUUGG- UAA--CCU-G C-CCUC---C -AGAC-C-GG 421 -AAU-AC-CA G--------- ------AG-- A(-GAAA-)U -CUCU-G--C UAAUGCC-GG 481 AUGACG---- ---------- -------U-C AU-A--U-G- ---GUC-(-- --------GC 541 AA-------- -)-GAC---- CU-CU----U GA-CCAAAG- ---GCGGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCCG--C- G--CUG---- 661 ----AAGG-- AUG---G-|A CCUGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-CG-GG-( AU-AAU-GG) -C-CCACC-A A|-GGC-GA- GGA------- -----UG-CG 781 U-AG-C-CG| -A-GCU--(G -AGA)-GGCU ----NA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AGUAUU U-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-U-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--ACAC| UGUG-AU-UC 1021 --UC-UGG-- GA-AACU-CA --UGG-GGA( G----UGGAA -----A---) GCCU-CA-UG 1081 ---------- -------A-C U-GA-CCG-- --GAC-U-AU U-AG--AAAG ---------C 1141 -AACUGCU-A ACUAC-GUG( CCA--GCAGC AGCGGUA-A) U-A-C-GUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- GAG-CAG-GC -G|-GC-UU- 1261 U-GC-NAG|C CGG---GGGU C-AAA-GG-C AG-UGG-C(- UU-A)A-CCA -UU-G-UU-- 1321 -CGUC-CCCG G-AAC-UGCA U-GGCUA-GA GUG-----CU G-GA-GAGGC AAG-C|GGAA 1381 CU-CCACAU- GUA-GCG(-G UGAAA)-UGC -GC-AGAU-A UG-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUA-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUC AG-U------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(CUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--GA-CC-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GCA-UA)- ---------- ---------- ---------- ---------C -CUCGG-CGC 1741 CA--CA---- --GC-(UAA- ---C)G-CA- UUGA-GUCCU C|C|G-CCU- G-GGUACUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(NUGCUA-C G)--CGGAAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------U ---UCUC--- AAA----GGC 1981 -CCU-A--(- GAGA-)-UAG -G-GAG---- ---------- ---------- --(---AUAG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GGG-AA-UGA |---A|C--G 2161 GU-GG-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCNC AA-------- CGAG-C--GC AACCC-CC-G |-UC--UUC- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --AC(-G--C AA)-GUC-G- -GAGG-A-AG 2761 A-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAC-G-CC-Y CUUAU-G-CC -CA--GGGC- 2821 G-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAACG CGU-U-G-C- GA-CAC-C(G 2881 -CGA)GGUG- ---------- AA-GCGGA-U CGCUG-AAAG -CC-G-ACC- CCAGUACGGA 2941 U-CGGAGUC- (UGCAAU-U- C)-GACUCCG -UGAAGC-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAUU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACUGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- CA-AG-GCCC -GAA-A-GCG 3121 U-UUG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-GC-GU-CU A-AGGC-AGG GCC-NG-NN- AUN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.1.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.1.6 EUB.CYLINDROIDES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.1.6 EUB.CYLINDROIDES_SUBGROUP. ORGANISM 2.16.9.1.6 EUB.CYLINDROIDES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ers.tonsil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erysipelothrix tonsillarum. ACCESSION No information KEYWORDS No information. SOURCE Erysipelothrix tonsillarum. ORGANISM Erysipelothrix tonsillarum. REFERENCE 1 AUTHORS ,M. and Molin,G. Ahrne,S., Stenstrom,I.-M., Jensen,N.E., Pettersson,B., Uhlen TITLE fragment length polymorphisms (RFLPs) Classification of Erysipelothrix strains on the basis JOURNAL Int. J. Syst. Bacteriol. 45, 382-385 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U21665|g717106 BASE COUNT 161 a 103 c 170 g 118 t 3824 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-AG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAA-UA --AGA-AGA( G----GGAA- -----U---) GCUU-CU-UA 1081 ---------- -------U-A U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UC-AAG|U UUA---UGGU U-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGCC-AUAG A-AAC-UGGU A-GACUA-GA GUG-----CA G-GA-GAGGU UAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAU 1801 GCG-C---(G CAA)---G-C GU-AAAACUC -AAA...... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ers.rhusio 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414. ACCESSION No information KEYWORDS No information. SOURCE Erysipelothrix rhusiopathiae str. alpha-P15 ATCC 19414. ORGANISM Erysipelothrix rhusiopathiae. REFERENCE 1 AUTHORS Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., TITLE classification A phylogenetic analysis of the mycoplasmas: Basis for their JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19414 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23728 ATCC 19414 = NCTC 8163 isolate_name= alpha-P15 BASE COUNT 411 a 303 c 449 g 317 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NNAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G U----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GGA---- -AC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- CAA--CCU-G C-CUCG---A -UGCC-U-GG 421 -GAU-AA-CA G--------- ------AG-- G(-GAAA-)C -UUCU-G--C UAAUACC-GG 481 AU-ACG---- ---------- -------U-U AA-U--C-U- ---AAG-(-- --------AC 541 AU-------- -)-CUU---- AG-AU----U AA-UUAAA-- ---GAUG--- ---------- 601 --(------- --GGAUA--- ---)------ ---------| ---CAU--C- A--CAA---- 661 ----CGAG-- AUG---G-|G CUUAU----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACGA-UA --GGA-AGA( G----GGAA- -----U---) GCUU-CU-UA 1081 ---------- -------U-A U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UC-AAG|U UUA---UGGU U-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-N-GA-- 1321 -UGCC-AUAG A-AAC-UGGU A-GACUA-GA GUG-----CA G-GA-GAGGU UAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAU 1801 GCG-C---(G CAA)---G-C GU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AANCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---CGCG--- CAA----AAG 1981 -CAC-A--(- GAGA-)-UGU -G-UA----- ---------- ---------- --(---AUAG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GGC-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-AAA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AU -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-UA -UA--CAGAG GGC-A-G-C- GA-AGC-A(G 2881 -CGA)UGCG- ---------- GA-GCGAA-U CUCAG-AAAG -UA-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-CU -AA-CCUAG- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 --------CU AGGAGG-G-A G-CC-GU-CG A-AGGU-AGG AUC-GA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ers.spVadk 4376 bp RNA RNA 02-JUL-1998 DEFINITION Erysipelothrix sp. str. Vadkasca. ACCESSION No information KEYWORDS No information. SOURCE Erysipelothrix sp. str. Vadkasca. ORGANISM Erysipelothrix sp. REFERENCE 1 AUTHORS Ahrne,S., Stenstrom,I.-M., Jensen,N.E., Pettersson,B., Uhlen ,M. and Molin,G. TITLE Classification of Erysipelothrix strains on the basis of restriction fragment length polymorphisms JOURNAL Int. J. Syst. Bacteriol. 45, 382-385 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U21666|g717105 isolate_name= Vadkasca BASE COUNT 158 a 104 c 172 g 118 t 3824 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACGA-UA --GGA-AGA( G----GGAA- -----U---) GCUU-UC-UA 1081 ---------- -------U-A U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GGGA- GCG-CAG-GC -G|-GU-UU- 1261 A-UC-AAG|U UUA---UGGU U-AAA-GU-U CG-GGG-C(- UU-A)A-CCC -CG-U-GA-- 1321 -UGCC-AUAG A-AAC-UGGU A-GACUA-GA GUG-----CA G-GA-GAGGU UAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--UA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAU 1801 GCG-C---(G CAA)---G-C GU-AAAACUC -AAA...... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.W13652 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. W 1365. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. W 1365. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U13036|g551082 isolate_name= W 1365 NB: duplicates Eub.W1365? BASE COUNT 371 a 280 c 410 g 287 t 3028 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -AAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CC----- -----GGACA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGAA---- ---|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- CAA--UCU-G C-CCAC---A AAGAC-U-GG 421 -GAU-AA-CC U--------- -----CCU-- G(-GAAA-)C -GGGG-A--C UAAUA-C-GG 481 AU-AGG---- ---------- -------U-A GA-A--G-A- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- UC-UU----C UA-UUAAA-- ---GAU---- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ----AG--C- A--CUA---- 661 ----GUGG-- AUG---A-|G CUUAU----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| ---CCU--(G -AGA)-GGGU ---GAA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-A-CUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GUA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GA-AAA-- GA-UAAA-CU --AGG-A--( -----GAGGA ---------) --UC-UU-AG 1081 ---------- -------U-C A-GA-CAUU- A-UCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU UCCGGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U UCA---UGGU C-AAA-UU-G UG-GGG-C(- UC-A)A-CCC -CA-U-CG-- 1321 -CGCC-AUGG A-UAC-UGGC A-GACUA-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUA-- ---------- ---------- ---------G 1501 CCA--AA-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|A -GU-AU-UGG -G-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-UGGAGUAU 1801 GCA-C---(G CAA)---G-U UG-GAAACAU AAAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)---GAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---CUUG--- CGA----AGU 1981 -UCU-A--(- GAGA-)-UAG -G-AUA---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUC- 2281 GG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAACG UGG-A-G-C- GA-CUG-U(G 2881 -CGA)ACAG- ---------- AA-GCGAA-U CACUG-AAAG -AU-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUG....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.W1365 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium sp. str. W 1365. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium sp. str. W 1365. ORGANISM Eubacterium sp. REFERENCE 1 AUTHORS Cheeseman,S.L., Weightman,A.J. and Wade,W.G. TITLE Taxonomy of Oral Asaccharolytic Eubacterium species JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z36271|g530292 isolate_name= W 1365 NB: duplicates Eub.W13652? BASE COUNT 381 a 296 c 425 g 299 t 2975 others ORIGIN 1 .......... .......... .......... GUGCUGCAGA AGAGUU(U-G A)U-CCU|GG 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-G -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--CC----- -----GGACA ---------- ---------- ---------- ---------- 181 ---------- ---------- ----CCU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AGG-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -GAGAA---- ---|-GG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAU -AC-AUAAG- CAA--UCU-G C-CCAC---A AAGAC-U-GG 421 -GAU-AA-CC U--------- -----CCU-- G(-GAAA-)C -GGGG-A--C UAAUA-C-GG 481 AU-AGG---- ---------- -------U-A GA-A--G-A- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- UC-UU----C UA-UUAAA-- ---GAU---- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ----AG--C- A--CUA---- 661 ----GUGG-- AUG---A-|G CUUAU----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GAC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| ---CCU--(G -AGA)-GGGU ---GAA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-A-CUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GGCAAU-- GG-GG-(GUA A)-CCC-UGA CCGA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GA-AAA-- GA-UAAA-CU --AGG-A--( -----GAGGA ---------) --UC-UU-AG 1081 ---------- -------U-C A-GA-CAUU- A-UCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU UCCGGAAUUA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-CU- 1261 G-UU-AAG|U UCA---UGGU C-AAA-UU-G UG-GGG-C(- UC-A)A-CCC -CA-U-CG-- 1321 -CGCC-AUGG A-UAC-UGGC A-GACUA-GA GUA-----UU G-GA-GAGGC AAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUGCUA-- ---------- ---------- ---------G 1501 CCA--AA-GA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|A -GU-AU-UGG -G-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-UGGAGUAU 1801 GCA-C---(G CAA)---G-U UG-GAAACAU AAAA-GGAAU UG-ACGGG-G -G-C-C---G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)---GAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---CUUG--- CGA----AGU 1981 -UCU-A--(- GAGA-)-UAG -G-AUA---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUC- 2281 GG--UUAC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAACG UGG-A-G-C- GA-CUG-U(G 2881 -CGA)ACAG- ---------- AA-GCGAA-U CACUG-AAAG -AU-A-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AUC--- --CGU-G... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.cylin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium cylindroides. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium cylindroides. ORGANISM Eubacterium cylindroides. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34617|g762800 ATCC 27803 (T) = VPI 3654 BASE COUNT 389 a 331 c 469 g 289 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----C -----CGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AGGGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCCC U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --G|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCAU---G -UGCC-C-GG 421 -NNC-AA-CG C--------- ------CU-- G(-GAAA-)C -GGGU-G--C UAAAACC-GG 481 AU-AGG---- ---------- -------U-A GA-G--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAA---- CU-UU----C UA-UUAAA-- ---GGGGC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCCC--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GGA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GC-GA 1021 --GA-GAA-- AA-ACGA-CA --CGG-AUA( G----GGAA- -----U---) GAUC-CG-UG 1081 ---------- -------G-G U-GA-UGGU- A-UCU-C-GC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 G-UU-AAG|U CUG---GAGU C-AAA-GC-C GG-CAG-C(- UC-A)A-CUG -UC-G-UA-- 1321 -CGCU-UUGG A-AAC-UGGC G-GGCUG-GA GUG-----CA G-AA-GAGGG CGA-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGCCUG-- ---------- ---------- ---------G 1501 UCU--GC-AA CUGACG-CUG AA-G------ -------CA- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -GG------- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- ---------A -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---CGGN--- NAA----GGG 1981 -CGU-A--(- GAGA-)-UAC -G-CNG---- ---------- ---------- --(---GAGG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCC-GG-UGA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UG--AUA- 2281 UG--UUAC-U AC-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-UAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CA -UA--CAAAG AGC-A-G-C- GA-ACC-C(G 2881 -UGA)GGGC- ---------- AG-GCGAA-U CUCGC-AAAG -UG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CCC--- ---------- ---------- -----(---- -UUUCA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGU-G-A G-CC-GU-CG A-AGGU-AGG AUC-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Stc.pleomo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Streptococcus pleomorphus str. EFB 61/60B ATCC 29734. ACCESSION No information KEYWORDS No information. SOURCE Streptococcus pleomorphus str. EFB 61/60B ATCC 29734. ORGANISM Streptococcus pleomorphus. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29734 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23730 ATCC 29734 = NCTC 11087 (T) = DSM 20574 isolate_name= EFB 61/60B BASE COUNT 401 a 308 c 467 g 298 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----C -----GGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAA---- --G|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AN-GUAGG- UAA--CCU-G C-CYAU---G -UGCC-C-GG 421 -GAU-AA-UU U--------- ------CU-- G(-GAAA-)C -GGAA-A--C UAAAACC-GG 481 AU-AGG---- ---------- -------U-A GG-N--A-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GA-CC----U UA-UUAAA-- ---GGGNC-- ---------- 601 --(------- ---UACG--- ---)------ ---------| --GCCC--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUGC----- -GG|----UG C--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGC ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GGA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAC--G-G UU(--UU-CG --)GA-CUGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- AA-ACGG-CC --GAC-AUA( G----GGAA- -----U---) GAUG-UC-GG 1081 ---------- -------A-G U-GA-UGGU- A-UCU-U-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GU-AC- 1261 G-GU-AAG|U CUG---UAGU A-AAA-GG-C GG-CAG-C(- UC-A)A-CUG -UC-G-UA-- 1321 -GGCU-AUGG A-AAC-UGUC G-AACUA-GA GUG-----CA G-AA-GAGGG CGA-U|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGCCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -G-------- -G-------- 1681 -(GAA-UA)A ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CN-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-NUG ACA-UC|--- ---------C ---CCGG--- CGA----AGA 1981 -CAU-G--(- GAGA-)-CAU -G-UUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-GG-NGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UG--AUA- 2281 UG--UUAC-U AA-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-UAU-CA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-GC -UA--CAAAG AGC-G-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-U CUCAU-AAAG -GU-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCNC- GUC-AAA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-G-A A-CC-GU-CG A-AGGU-AGG AUC-GA-NG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.biform 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium biforme. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium biforme. ORGANISM Eubacterium biforme. REFERENCE 1 AUTHORS Woese,C.R. JOURNAL Unpublished (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59230 ATCC 27806 (T) = VPI C17-5 BASE COUNT 404 a 311 c 455 g 304 t 2902 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----A -----GGA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUCU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---GAA---- --U|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUAGG- UAA--CCU-G C-CCAU---G -UGCC-C-GG 421 -GAU-AA-CU U--------- ------CU-- G(-GAAA-)C -GGAU-G--C UAAAACC-GG 481 AU-AGG---- ---------- -------U-A GC-A--G-A- ---CAA-(-- --------GC 541 AU-------- -)-UUG---- AC-UG----C UA-UUAAA-- ---GUGGC-- ---------- 601 --(------- ---UAAG--- ---)------ ---------| --GCCA--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUNC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CA 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGC ----GG-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GGA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A G-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- AA-ACGA-CA --UUC-AUA( G----GGAA- -----U---) GAUG-AG-UG 1081 ---------- -------A-G U-GA-UGGU- A-UCU-U-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UANA-GGGU- GCG-UAG-GU -G|-GC-AG- 1261 A-AC-AAG|U CUG---GAGU A-AAA-GG-U AU-GGG-C(- UC-A)A-CCC -GU-A-CU-- 1321 -GGCU-CUGG A-AAC-UGUU C-AGCUA-GA GAA-----CA G-AA-GAGGA CGG-C|GGAA 1381 CU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 UCU--GU-UG CUGACA-CUG AA-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|G -GU-GU-UGG -GG------- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- ---------A -CUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGN-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UC|--- ---------C ---CUUG--- CAG----AGR 1981 -UAU-A--(- GAGA-)-UAU -A-UCC---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UG--AUA- 2281 UG--UUAC-U AA-CA----- ---------- ---------- ---U(---UG ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- A-UAU-CA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUN--CUACA AUGGC-G-UC -UA--CAAAG AGC-G-G-C- AA-GCC-U(G 2881 -UGA)AGGC- ---------- AA-GCGAA-U CUCAU-AAAG -GA-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-C- C)-GACUUCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CCU--- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAGU-G-A G-CC-GU-CG A-AGGC-AGG ACC-GA-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.dolich 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium dolichum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium dolichum. ORGANISM Eubacterium dolichum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34682|g762811 ATCC 29143 (T) = VPI C9-20 BASE COUNT 417 a 305 c 448 g 309 t 2897 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UU---UUUA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUCC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -AAAAA---- GAC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--CCU-G C-CCAU---G -UGCC-C-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAAACC-GN 481 AU-AGG---- ---------- -------U-G GC-U--U-C- ---GAG-(-- --------GC 541 AU-------- -)-CUC---- GG-AG----A CA-UUAAA-- ---AUGGC-- ---------- 601 --(------- ---UAAG--- ---)------ ---------| --GCCA--U- G--AAC---- 661 ----AUGG-- AUG---G-|A UCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GGA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GA-GAA-- AA-ACGG-AU --CAU-GUA( G----GGAA- -----U---) GACA-UG-AU 1081 ---------- -------A-G U-GA-UGGU- A-UCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUGA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-AC- 1261 A-UU-AAG|U CUG---AAGU A-AAA-GG-C AG-CAG-C(- UC-A)A-CUG -CU-G-UU-- 1321 -CGCU-UUGG A-AAC-UGGU G-AACUA-GA GUG-----CA G-GA-GAGGG CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGCCUG-- ---------- ---------- ---------G 1501 CCU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------G ---AUAU--- AAA----UGU 1981 -UCU-A--(- GAGA-)-UAG -A-AAG---- ---------- ---------- --(---AUAG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUA-UC-ACA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCA- 2281 UG--UUAC-C AA-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-UC -UA--CAAAG AGG-A-G-C- GA-CAU-G(G 2881 -UGA)CAUG- ---------- AA-GCAAA-U CUCAU-AAAG -GG-C-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-CAG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CC---- ---------- ---------- -----(---- -UAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-G-A G-CC-GU-CG A-AGGU-AGG ACC-GA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.tortuo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium tortuosum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium tortuosum. ORGANISM Eubacterium tortuosum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34683|g762812 ATCC 25548 = VPI 1084B (T) BASE COUNT 426 a 301 c 439 g 314 t 2896 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---AA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUGAA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----AA---- GAC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NC-GUAGG- UAA--CCU-A C-CCAU---G -UAAC-U-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAAACC-GG 481 AU-AGG---- ---------- -------U-A AG-A--U-U- ---GAG-(-- --------GC 541 AU-------- -)-CUU---- AA-UC----U UA-UGAAA-- ---AAAGCU- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -GGCUU--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GGA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-GAA-- GA-AAGA-UG --UAU-AUA( G----GAAA- -----U---) GAUA-UA-CA 1081 ---------- -------A-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GU-AC- 1261 A-UU-AAG|U CUG---AAGU A-AAA-GG-C AU-CAG-C(- UC-A)A-CUG -AU-G-UU-- 1321 -AGCU-UUGG A-AAC-UGAU G-AACUA-GA GUG-----CA G-AA-GAGGG CAA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUGCCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------G ---AUGU--- AAA----AGC 1981 -CCU-A--(- GAGA-)-UAG -G-GNA---- ---------- ---------- --(---AUAG 2041 GUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| ACA-UC-ACA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--ACA- 2281 UG--UUAC-C AA-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|G 2701 G-GA-CU-C- A-UGU-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-AC -UA--CAAAG AGC-A-G-C- GA-ACC-U(G 2881 -CGA)AGGC- ---------- AA-GCGAA-U CUCAU-AAAG -GU-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-G-A G-CC-GU-CG A-AGGU-AGG ACC-GA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.innocuum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium innocuum str. B-3 ATCC 14501 (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium innocuum str. B-3 ATCC 14501 (T). ORGANISM Clostridium innocuum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 14501 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23732 isolate_name= B-3 BASE COUNT 427 a 330 c 464 g 317 t 2838 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NCANNAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---UUCA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -AAAAA---- GAC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGG- UAA--CCU-G C-CCAU---G -UGUC-C-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAAACC-GG 481 AU-AGG---- ---------- -------U-A UA-C--G-G- ---AGC-(-- --------GC 541 AU-------- -)-GCU---- CU-GU----A UA-UUAAA-- ---GCGCC-- ---------- 601 --(------- --CUUCAA-- ---)------ ---------| --GGCG--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUGC----- -GA|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-CG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----AA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GAA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUU-GU-AA 1021 --GU-GAA-- GA-ACGG-CU --CAU-AGA( G----GAAA- -----U---) GCUA-UG-GG 1081 ---------- -------A-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GYAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-GU- 1261 A-CU-AAG|U CUG---UAGU A-AAA-GG-C AA-UGG-C(- UC-A)A-CCA -UU-G-UA-- 1321 -AGCU-AUGG A-AAC-UGGU A-UGCUG-GA GUG-----CA G-AA-GAGGG CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGCCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U UN-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGNUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------G ---AAAC--- AAA----UAC 1981 -CCU-A--(- GAGA-)-UAG -G-GGG---- ---------- ---------- --(---AUAA 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| GGA-UC-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GCA- 2281 UG--UUAC-C AG-CA----- ---------- ---------- ---U(---CA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-UGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-AC -CA--CAAAG AGC-A-G-C- GA-CUU-G(G 2881 -UGA)CAAG- ---------- AA-GCGAA-U CUCAU-AAAG -AU-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-CAG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-G-A G-CC-GU-CG A-AGGU-AGG ACC-GA-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(GGA-A)CG UGGGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.cylin1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium cylindroides. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium cylindroides. ORGANISM Eubacterium cylindroides. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34616|g762799 ATCC 27528 = JCM 7787 = VPI 6849A BASE COUNT 403 a 311 c 447 g 304 t 2911 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NCAAAUGG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----G UC---UUUA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGA-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -AAAGA---- GAC|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -NN-GUAGG- UAA--CCU-G C-CCAU---G -UGCC-C-GG 421 -GAU-AA-CU G--------- ------CU-- G(-GAAA-)C -GGUA-G--C UAAAACC-GN 481 AU-AGG---- ---------- -------U-A UG-A--G-G- ---RAG-(-- --------GC 541 AU-------- -)-CUU---- CC-UC----A UA-UUAAA-- ---GCACC-- ---------- 601 --(------- ---UUCG--- ---)------ ---------| --GGUG--U- G--AAC---- 661 ----AUGG-- AUG---G-|A CCUGC----- -GN|----CG C--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-GUCAAU-- GG-GG-(GNA A)-CCC-UGA ACGA|-GCAA UGCC-GC-GU 961 G-U-GU-R-A A-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCAC| UGUU-GU-AA 1021 --GU-GAA-- GA-AYGC-CA --CAU-AGA( G----GAAA- -----U---) GCUA-UG-UG 1081 ---------- -------G-G U-GA-CGGU- A-GCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAAUCA -UU-GGGC|G UAAA-GGGU- GCG-UAG-GU -G|-GC-AC- 1261 G-AU-AAG|U CUG---AAGU A-AAA-GG-C AA-CAG-C(- UC-A)A-CUG -UU-G-UA-- 1321 -UGCU-UUGG A-AAC-UGUC G-AGCUA-GA GUG-----CA G-AA-GAGGG CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGCCUG-- ---------- ---------- ---------G 1501 UCU--GU-AA CUGACA-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--AA-CU-- -------A|A -GU-GU-UGG -A-------- ---------- 1681 -(-GA-GA)- ---------- ---------- ---------- ---------- -UUCAG-UGC 1741 UG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUUCU C|C|G-CCU- G-GGGAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAACUC -AAA-GGAAU UG-ACGNG-N -G-C-CN--G 1861 C-A--CA-AG CGGNGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-CC-UUG ACA-UG|--- ---------G ---AUAU--- AAA----UGU 1981 -UCU-A--(- GAGA-)-UAG -A-AAG---- ---------- ---------- --(---AUAG 2041 CUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| AUA-UC-ACA |---C|A--G 2161 GU-GG-NGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUC- 2281 UG--UUAC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-GA-CU-C- A-GGA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-GC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CC -UA--CAAAG AGC-A-G-C- GA-CAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CUCAU-AAAG -GG-C-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -GAA-G-CCG 3121 G-UGG-C-AU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGU-G-A G-CC-GU-CG A-AGGU-AGG ACC-GA-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.2 SBR2004_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.2 SBR2004_ISOLATE. ORGANISM 2.16.9.2 SBR2004_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.2004 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SBR2004. str. SBR2004. ACCESSION No information KEYWORDS No information. SOURCE str. SBR2004. str. SBR2004. ORGANISM str. SBR2004. REFERENCE 1 AUTHORS Bond,P.L., Hugenholtz,P., Keller,J. and Blackall,L.L. TITLE Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors JOURNAL Appl. Environ. Microbiol. 61 (5), 1910-1916 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X84549|g871670 isolate_name= SBR2004 BASE COUNT 95 a 84 c 126 g 72 t 3999 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGC-GGC-G -UGC-CU--A AUAC-NUGCA A-GUC-GAGC 121 G--GCAA--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -CAC-GG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CUGGU G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -----G---- ---|-CG--- AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- -AA--CGU-A C-CCCA---A -AGUG-A-GG 421 -GAU-AA-GC A--------- ------CC-- A(-GAAA-)U -GGUG-U--C UAAUACC-GC 481 AU-GUG---- ---------- ---------- ---------- ---AUC-(-- --------UA 541 AG-------- -)-GAU---- ---------- ----UAAA-- ---GC----- ---------- 601 --(------- ---UUCG--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGGG-- AGC---G-|G CCUGC----- -GG|----AU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AU 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -ACUGG-G-A 841 (CUGA-GA-- ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GG-(GNA A)-CCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3 SPIROPLASMA_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3 SPIROPLASMA_GROUP. ORGANISM 2.16.9.3 SPIROPLASMA_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3.1 M.MYCOIDES_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3.1 M.MYCOIDES_SUBGROUP. ORGANISM 2.16.9.3.1 M.MYCOIDES_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capripneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capripneumoniae. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26042|g862686 BASE COUNT 417 a 292 c 413 g 344 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------AC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-C U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUA A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GUU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capripneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capripneumoniae. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26051|g862691 BASE COUNT 418 a 291 c 412 g 345 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------AC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-C U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUA A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GUU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-ACUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGUAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UUG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sp.F38rA 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. F38 [gene=rrnA operon]. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. F38 [gene=rrnA operon]. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Bascunana,C.R., Mattsson,J.G., Bolske,G. and Johansson,K.-E . TITLE Characterization of the 16S rRNA genes from Mycoplasma sp. strain F38 and development of an identification system based on PCR JOURNAL J. Bacteriol. 176, 2577-2586 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L14607 operon= rrnA operon isolate_name= F38 BASE COUNT 122 a 86 c 116 g 101 t 3951 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .........C 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUA A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GUU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA..... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.capricol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Iwami,M., Muto,A., Yamao,F. and Osawa,S. TITLE Nucleotide sequence of the rrnB 16S ribosomal RNA gene from Mycoplasma capricolum JOURNAL Mol. Gen. Genet. 196, 317-322 (1984) STANDARD No information REFERENCE 2 AUTHORS Sawada,M., Muto,A., Iwami,M., Yamao,F. and Osawa,S. TITLE Organization of ribosomal RNA genes in Mycoplasma capricolum JOURNAL Mol. Gen. Genet. 196, 311-316 (1984) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X00921 ATCC 27343 = NCTC 10154 (T) BASE COUNT 430 a 303 c 432 g 358 t 2853 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-U -GGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-AA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-GAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-NUG ACA-UC|--- ---------C ---AGUG--- UAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26048|g862690 BASE COUNT 430 a 304 c 432 g 358 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-GAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26046|g862688 BASE COUNT 430 a 304 c 432 g 358 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-GAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26047|g862689 BASE COUNT 417 a 292 c 415 g 342 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26045|g862687 BASE COUNT 417 a 292 c 415 g 342 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26040|g862684 BASE COUNT 417 a 291 c 415 g 343 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sp.F38 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. F38 [gene=rrnB operon]. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. F38 [gene=rrnB operon]. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Bascunana,C.R., Mattsson,J.G., Bolske,G. and Johansson,K.-E. TITLE Characterization of the 16S rRNA gene from Mycoplasma sp. strain F38 and development of an identification system based on PCR JOURNAL J. Bacteriol. 176, 2577-2586 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M94728 operon= rrnB operon isolate_name= F38 BASE COUNT 434 a 299 c 427 g 362 t 2854 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CA-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CUAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-CGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUAC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-A--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UU-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.capric10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capripneumoniae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capripneumoniae. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26052|g862692 BASE COUNT 434 a 300 c 427 g 363 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CA-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CUAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AAUA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-CGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCUAC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-A--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UU-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spPG50_3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. PG50. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. PG50. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26054|g862703 isolate_name= PG50 BASE COUNT 432 a 303 c 430 g 359 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.PG50 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. PG50. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. PG50. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Frydenberg,J. and Christiansen,C. TITLE The sequence of 16S rRNA from mycoplasma strain PG50 JOURNAL DNA 4, 127-137 (1985) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M10588 isolate_name= PG50 BASE COUNT 433 a 303 c 428 g 359 t 2853 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-CUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GG-U--U- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-A-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spPG50_2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. PG50. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. PG50. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26053|g862702 isolate_name= PG50 BASE COUNT 418 a 291 c 415 g 342 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-A-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.caprico3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma capricolum subsp. capricolum. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma capricolum subsp. capricolum. ORGANISM Mycoplasma capricolum. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26041|g862685 BASE COUNT 432 a 305 c 429 g 358 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--CAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26039|g862696 BASE COUNT 432 a 303 c 429 g 359 t 2853 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -UUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---U-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAA- -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26038|g862695 BASE COUNT 422 a 294 c 412 g 339 t 2909 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--UCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GA-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUA A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GCU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAAAAAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides str. PG1 (SC type). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides str. PG1 (SC type). ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04647|g440208 isolate_name= PG1 (SC type) BASE COUNT 158 a 98 c 158 g 130 t 3832 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GW-AA)- ---------- ---------- ---------- ---------- -YUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. capri str. PG3. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. capri str. PG3. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04648|g440209 isolate_name= PG3 BASE COUNT 158 a 99 c 158 g 131 t 3830 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. capri. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. capri. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26037|g862694 BASE COUNT 432 a 305 c 431 g 356 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoid11 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26050|g862700 BASE COUNT 433 a 305 c 430 g 356 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. capri. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. capri. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26036|g862693 BASE COUNT 418 a 293 c 415 g 340 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide8 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26043|g862697 BASE COUNT 418 a 292 c 415 g 341 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CU A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoides 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides str. UM30847 ATCC 33557. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33557 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23943 isolate_name= UM30847 BASE COUNT 399 a 278 c 392 g 330 t 2977 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUNA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C YG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GC........ .......... .......... .......... 1861 .......... .......... .......... .......... .(....NA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UNCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CA- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoide9 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26044|g862698 BASE COUNT 433 a 304 c 430 g 357 t 2852 others ORIGIN 1 .......... .......... .......... ....AAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C UG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mycoid10 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mycoides subsp. mycoides. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mycoides subsp. mycoides. ORGANISM Mycoplasma mycoides. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26049|g862699 BASE COUNT 418 a 292 c 415 g 341 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUCA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUA---- ---------- -------G-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UC--AAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( AU-AAU-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GACU-UU-AU 1081 ---------- -------C-U U-GA-CAGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C UG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUA U-UACUA-GA AUG-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGG -G-------- ---------- 1681 -(-GU-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -UGA)AGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3.2 MESOPLASMA_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3.2 MESOPLASMA_SUBGROUP. ORGANISM 2.16.9.3.2 MESOPLASMA_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.putrefac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma putrefaciens str. C30 KS-1 ATCC 15718 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma putrefaciens str. C30 KS-1 ATCC 15718 (T). ORGANISM Mycoplasma putrefaciens. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15718 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23938 isolate_name= C30 KS-1 BASE COUNT 394 a 278 c 402 g 324 t 2978 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 N--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G--UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUG---- ---------- -------A-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UU--GAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U N|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| NGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GCCU-UU-AU 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-NU-- 1321 -CGCC-UUGA A-AAC-UGCA U-UACUA-GA AUA-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-UG-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAA.... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GNGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---N|A--G 2161 GU-GG-UNCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- U)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGNNN- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CC-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AA.... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.putrefa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma putrefaciens.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma putrefaciens. ORGANISM Mycoplasma putrefaciens. REFERENCE 1 AUTHORS Pettersson,B., Leitner,T., Ronaghi,M., Boelske,G., Uhlen,M. and Johansson,K. TITLE The phylogeny of the Mycoplasma mycoides cluster as determined by sequence analysis of the 16S rRNA genes from the two rRNA operons JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26055|g862701 BASE COUNT 412 a 297 c 424 g 333 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 GG-GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G--UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUA---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-GUG---- ---------- -------A-A UC-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AG----A UU--GAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- A--CUA---- 661 ----UGAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-GUA( G----GAAA- -----U---) GCCU-UU-AU 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GU-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGCA U-UACUA-GA AUA-----CA A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 UUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-UGG -G-------- ---------- 1681 -(-UG-AA)- ---------- ---------- ---------- ---------- -CUCAG-CGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UGG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CC-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mes.seiffr 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mesoplasma seiffertii.. ACCESSION No information KEYWORDS No information. SOURCE Mesoplasma seiffertii. ORGANISM Mesoplasma seiffertii. REFERENCE 1 AUTHORS Navas-Castillo,J., Laigret,F. and Bove,J.-M. TITLE 16S rDNA sequence analysis of Acholeplasma seiffertii, a mollicute from plant surfaces, and its transfer to Mesoplasma, a new genus in the spiroplasma phylogenetic group JOURNAL Nucleic Acids Res. 21, 2249-2249 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L12056 Former RDP Sids: Acp.seiffr NB: former name Acholeplasma seiffertii BASE COUNT 233 a 182 c 246 g 202 t 3513 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.GAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCUG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -GG------- ---------- 1681 -(GUU-AU)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-U- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-U-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UAG-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-UC-CC A-AGGU-AGG AUU-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(GGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Enp.ellych 4376 bp RNA RNA 02-JUL-1998 DEFINITION Entomoplasma ellychniae str. ELCN-1 ATCC 43707. ACCESSION No information KEYWORDS No information. SOURCE Entomoplasma ellychniae str. ELCN-1 ATCC 43707. ORGANISM Entomoplasma ellychniae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43707 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24292 Former RDP Sids: M.ellychni isolate_name= ELCN-1 NB: former name "Mycoplasma ellychnium" BASE COUNT 398 a 286 c 407 g 328 t 2957 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAAUG AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--A UAAUACC-GC 481 AU-AUU---- ---------- -------A-A UA-U--CAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----A UU--CAAA-- ---GAUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAU--C- G--CUA---- 661 ----AAAG-- AUG---G-|G GAUGC----- -GG|----CG U--AUUA-G- UUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U N|-GAC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --UUG-AGA( G----GAAA- -----U---) GCUC-UU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 C-GC-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUG G-GACUA-GA AUA-----UC A-GA-GAGGU AAA-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -UUUACUG-- ---------- ---------- ---------G 1501 CUG--AU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-AU-UGG -GG------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CNN)---G.. .......... .......... .......... .......... 1861 ......A-AN NGGUGG-AGC A-U-GU-GGU -UUAAU.... .(....NA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GNG---- ---------- ---------- --(---GAGG 2041 UAAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---A|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UN-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCUAU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAC 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-C G-CG-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mes.entomo 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mesoplasma entomophilum str. TAC ATCC 43706 (T). ACCESSION No information KEYWORDS No information. SOURCE Mesoplasma entomophilum str. TAC ATCC 43706 (T). ORGANISM Mesoplasma entomophilum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43706 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23931 Former RDP Sids: Acp.entomo isolate_name= TAC NB: former name Acholeplasma entomophilum BASE COUNT 399 a 292 c 410 g 320 t 2955 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CN----- ---------- ---------- 241 --------NG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UN--C AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUC---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--G UAAUACC-GC 481 AU-GUG---- ---------- -------G-A UG-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AC----A UU--CAAA-- ---GAUCC-- ---------- 601 --(------- ---GNNU--- ---)------ ---------| --GGAU--C- A--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAC-AU --AGG-AGA( G----GAAA- -----U---) GCUC-UU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 C-GC-AAG|U UUG---AGGU U-AAA-GN-C CG-GAG-C(- UC-A)A-CUC -CN-G-UU-- 1321 -CGCC-UUGA A-AAC-UGCG G-GACUA-GA AUA-----UC A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUG--AU-UA UUGACG-CUG AG-G------ -------CN- C-GNAA-GC- NU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-AU-UGG -GG------- ---------- 1681 -(ANN-NA)- ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C......... .......... .......... .......... .(....AA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CNN)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAC 3121 G-UUU-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-C N-CG-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Enp.melale 4376 bp RNA RNA 02-JUL-1998 DEFINITION Entomoplasma melaleucae str. M1 ATCC 49191. ACCESSION No information KEYWORDS No information. SOURCE Entomoplasma melaleucae str. M1 ATCC 49191. ORGANISM Entomoplasma melaleucae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49191 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24478 Former RDP Sids: M.sp.M1 isolate_name= M1 NB: former name Mycoplasma sp. BASE COUNT 403 a 292 c 414 g 327 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUC---U -AGCG-G-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -GAAA-G--G UAAUACC-GC 481 AU-GUG---- ---------- -------G-A UA-U--UAUY ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AU----A UU--CAAA-- ---GAUCC-- ---------- 601 --(------- ---GNNU--- ---)------ ---------| --GGAU--C- A--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGG-AGA( G----GAAA- -----U---) GCUC-UU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UU- 1261 U-GC-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUG A-GACUA-GA AUA-----UC A-GA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 CUG--AU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CA-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-AU-UGG -GG------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------C -CUCAG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-N--CA-AG NGG....... .......... .......... .(....AA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAAG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UNN|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -YGA)GGGG- ---------- GA-GCUAA-U CUCAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAC 3121 G-UUU-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-C G-CG-UC-CC A-AGGU-AGG ACU-AG-CG- AUU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Mes.lactuc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mesoplasma lactucae str. 831-C4 ATCC 49193. ACCESSION No information KEYWORDS No information. SOURCE Mesoplasma lactucae str. 831-C4 ATCC 49193. ORGANISM Mesoplasma lactucae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 49193 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24479 Former RDP Sids: M.sp.831C4 isolate_name= 831-C4 NB: former name Mycoplasma sp. BASE COUNT 391 a 282 c 398 g 326 t 2979 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUCAAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-NUUU---U -AAUG-G-GG 421 -GAU-AA-CC U--------- ------UU-- G(-GAAA-)C -GAAG-G--A UAAUACC-GC 481 AU-AAG---- ---------- -------A-U CU-U--CAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AA----G AG--GAAA-- ---GAACC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGUU--C- G--UUA---- 661 ----AAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- UUA-G---UA 721 GG-CG-GG-( GU-AAU-GG) -C-CCACC-U A|-GAC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-AA 1021 --AG-GAA-- GA-AUAG-AC --AGA-AGA( G----GAAAU -----G---) -CUU-UU-GU 1081 ---------- -------U-U U-GA-CGGU- A-CUU-U-AC C-AG--AAAG ---------U 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGA-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UACA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 U-GU-AAG|U UUG---AGGU U-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CN-G-UU-- 1321 -UGCC-UUGA A-AAC-UAUG C-AACUA-GA AUG-----UA A-CA-GAGGU GAG-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-A)GCGG- -CUCACCA-- ---------- ---------- ---------G 1501 GUU--AU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -AC------- ---------- 1681 -(-UU-AA)- ---------- ---------- ---------- ---------G -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCA-C---(G CAA)---G-U G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....NA-C A)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----UGG 1981 -CAU-A--(- GAGA-)-UAU -G-CCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UNCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--AUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -UA--CAAAG AGC-U-G-C- AA-UCC-C(G 2881 -UGA)GGAG- ---------- GA-GCAAA-U CUCAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGAAGGC- (UGCAAC-U- C)-GCCUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCUAU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CGAG A--GU-UGG- UA-AU-ACCA -GAA-G-UAG 3121 G-UUG-C-CU -AA-CC---- ---------- ---------- -----(---- -NUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GNAGG-G-C G-CC-UN-CC N-AGGU-AGG ACU-GG-CN- ANU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3.3 SPP.CLARKII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3.3 SPP.CLARKII_SUBGROUP. ORGANISM 2.16.9.3.3 SPP.CLARKII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.clarki 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma clarkii str. CN-5 ATCC 33827. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma clarkii str. CN-5 ATCC 33827. ORGANISM Spiroplasma clarkii. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33827 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24474 Former RDP Sids: Spp.sp.CN5 isolate_name= CN-5 NB: former name Spiroplasma sp. BASE COUNT 376 a 277 c 399 g 319 t 3005 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--NU----- ---------- ---------- 241 --------UG -)CA-N---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-NN--- AGUN-GCGA- 361 -A-NG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CNNU---U -AGUN-G-GG 421 -GAU-AN-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GU----- ---------- -------G-A CG-U--CACU ---AUG-(-- --------GC 541 AU-------- -)-CAG---A AG-AC----G UU--AGAA-- ---GNCCY-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGGC--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAU-UG) -C-UCACC-U A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAUG-CU --AGA-AGA( G----GAAAU -----G---) -CUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-UU-AAG|U UUG---AGGU U-AAA-GA-C CG-GAG-C(- UC-A)A-CUC -CG-G-NUU- 1321 -CGCC-UUGA A-AAC-UGGC U-GACUA-GA AUA-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUG-- ---------- ---------- ---------G 1501 CCU--GU-UA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -C-------- ---------- 1681 -(-AU-AC)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 UG--NA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAG... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--AUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG AGU-C-G-C- AA-UCC-N(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-CAC 3121 G-UAU-C-UU -AA-CC---- ---------- ---------- -----(---- -AUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CG-UA-CC A-AGGU-AGG ACU-AG-CG- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.apis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma apis str. B-31 ATCC 33834 (T). ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma apis str. B-31 ATCC 33834 (T). ORGANISM Spiroplasma apis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33834 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23937 isolate_name= B-31 BASE COUNT 381 a 289 c 405 g 319 t 2982 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AC----- ---------- -------G-A CA-C--CAUU ----UG-(-- --------GC 541 AU-------- -)-CAA---A AG-GU----G UU--AAAA-- ---GACCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGGU--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-U A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CNCAAU-- GG-GC-(GAA A)-GCC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--A-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-CU --AGA-AGA( G----GAAAU -----G---) -CUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UG- 1261 A-UU-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-NU-- 1321 -CGCC-UUGA A-AAC-UGAU U-AACUA-GA AUA-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -C-------- ---------- 1681 -(-AA-UU)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G.. .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGN-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGU-C-G-C- AA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -CC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-UGG- UA-AU-GCCA -GAA-G-CAC 3121 G-UAU-C-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G G-CG-UA-CC A-AGGU-AGG AUU-AG-CG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.gladia 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma gladiatoris str. TG-1 ATCC 43525. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma gladiatoris str. TG-1 ATCC 43525. ORGANISM Spiroplasma gladiatoris. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43525 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24475 Former RDP Sids: Spp.sp.TG1 isolate_name= TG-1 NB: former name Spiroplasma sp. BASE COUNT 400 a 292 c 425 g 335 t 2924 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----G--GC (--UU----- ---------- ---------- 241 --------U- -)GC-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AC----- ---------- -------G-A CA-A--CAUU ---AUG-(-- --------GC 541 AU-------- -)-CAG---A AG-UU----G UU--AAAA-- ---GGCCC-- ---------- 601 --(------- ---GUAU--- ---)------ ---------| --GGGU--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAA-AG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CNCAAU-- GG-GC-(GAA A)-GCC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| NGUU-GU-UA 1021 --GG-GAA-- GA-AAUG-CU --AGA-AGA( G----GAAAU -----G---) -CUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-A-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 U-UU-AAG|U UUG---AGGU U-AAA-GC-C UG-GAG-C(- UC-A)A-CUC -CA-G-UU-- 1321 -CGCC-UUGA A-AAC-UGGG U-AACUA-GA AUG-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUG-- ---------- ---------- ---------G 1501 CCU--GU-AA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- NU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -C-------- ---------- 1681 -(-AU-UA)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GCU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-U- U-AGC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAAAG AGU-C-G-C- AA-UCU-C(G 2881 -CGA)GAGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-UGG- UA-AU-GCCA -GAA-G-CAN 3121 G-UAU-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-N N-CG-UA-CC A-AGGU-AGG AUU-AG-CG- ANU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.taiwan 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma taiwanense str. CT-1 ATCC 43302. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma taiwanense str. CT-1 ATCC 43302. ORGANISM Spiroplasma taiwanense. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43302 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24476 isolate_name= CT-1 BASE COUNT 376 a 284 c 409 g 328 t 2979 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AC----- ---------- -------G-A CA-C--CAUU ---AUG-(-- --------GC 541 AU-------- -)-CAG---A AG-GU----G UU--AAAA-- ---GGCCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGGU--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- UUA-G---UA 721 GG-UG-AG-( GU-AAU-UG) -C-UCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAUG-CU --AGA-AAA( G----GAAAU -----G---) -UUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCCGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GC -G|-GU-UA- 1261 G-UU-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-NU-- 1321 -CGCC-UUGA A-AAC-UGGC U-AACUA-GA AUG-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUG-- ---------- ---------- ---------G 1501 CCU--GU-GA UUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -CA------- ---------- 1681 -(-UU-U-)- ---------- ---------- ---------- ---------U -GUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A G......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCY-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAC)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAA-G-CAC 3121 G-UAU-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-N G-CG-UA-CC A-AGGU-AGG AUU-AG-CG- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.diabro 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma diabroticae str. DU-1 ATCC 43210. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma diabroticae str. DU-1 ATCC 43210. ORGANISM Spiroplasma diabroticae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43210 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24482 Former RDP Sids: Spp.sp.DU1 isolate_name= DU-1 NB: former name Spiroplasma sp. BASE COUNT 387 a 284 c 412 g 326 t 2967 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-NUUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AC----- ---------- -------G-A CA-U--CAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UU--GAAA-- ---GGCCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGGU--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-U A|-GGC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-NA 1021 --GG-GAA-- GA-ACAG-CU --AGA-AGA( G----GAAAU -----G---) -CUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GN -G|-GU-UA- 1261 G-UU-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CG-G-NU-- 1321 -CGCC-UUGA A-AAC-UGGC U-NACUA-GA AUG-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUG-- ---------- ---------- ---------G 1501 CCU--GU-UA UUGACU-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -C-------- ---------- 1681 -(AUU-AA)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-N--CA-AG .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCN-A- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAAAG AGU-U-G-C- AA-UCC-U(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAN-G-CAC 3121 G-UAU-C-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GNGGG-G-N N-CG-UA-CC A-AGGU-AGG AUU-AG.... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.monobi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma monobiae str. MQ-1 ATCC 33825. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma monobiae str. MQ-1 ATCC 33825. ORGANISM Spiroplasma monobiae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33825 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24481 Former RDP Sids: Spp.sp.MQ1 isolate_name= MQ-1 NB: former name Spiroplasma sp. BASE COUNT 383 a 281 c 399 g 325 t 2988 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-N--C UNAUACC-GC 481 AU-AU----- ---------- -------A-A CA-U--CAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UU--AAAA-- ---GGCCC-- ---------- 601 --(------- ---GUAU--- ---)------ ---------| --GGGU--C- G--CUA---- 661 ----GAAG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- CUA-G---UA 721 GG-UG-GG-( GU-AAA-GG) -C-CCACC-U A|-GGC-GA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGAA|-GCAA UGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-CU --AGA-AGA( G----GAAAU -----G---) -CUU-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAUA-GGGU- GCG-UAG-GA -G|-GU-UA- 1261 G-UU-AAG|U UUG---AGGU U-AAA-GC-C CG-GAG-C(- UC-A)A-CUC -CN-N-GUU- 1321 -CGCC-UUGA A-AAC-UGGC U-AACUA-GA AUG-----CA G-GA-GAGGU AGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G UA-G)GCGG- -UCUACUN-- ---------- ---------- ---------G 1501 CCU--GU-UA UUGACU-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA G--UA-CU-- -------A|A -GU-GU-CGG -C-------- ---------- 1681 -(AUU-AA)- ---------- ---------- ---------- ---------- -GUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUN -NNA-GNNAU U......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UAC-A--(- GAGA-)-UGU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-N |-UN--NUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAU-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAAAG AGU-C-G-C- AA-UCC-U(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CUCAA-AAAG -UC-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGC-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-ACCA -GAN-G-CAC 3121 G-UAU-C-UU -AN-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGANG-N-N N-NN-UA-CC N-AGGU-AGG AUU-G..... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3.4 SPP.CITRI_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3.4 SPP.CITRI_SUBGROUP. ORGANISM 2.16.9.3.4 SPP.CITRI_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.mirum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma mirum str. SMCA ATCC 29335 (T). ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma mirum str. SMCA ATCC 29335 (T). ORGANISM Spiroplasma mirum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 29335 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24662 isolate_name= SMCA BASE COUNT 370 a 291 c 412 g 322 t 2981 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUACAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- GGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CCAU---U -AGCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-GAU---- ---------- -------A-U CU-U--UGGA ---GGG-(-- --------GC 541 AU-------- -)-CUU---U -G-AA----G GU-UGAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAC--C- A--CUA---- 661 ----AUGG-- AUG---A-|G GGUGC----- -GG|----CG U--AUUA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-UA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CGCC-GC-GU 961 G-A-CU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GGUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-CA --AAU-AUA( G----GAAAU -----G---) -CUA-UU-UG 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- GCG-CAG-AC -G|-GU-UU- 1261 A-GC-AAG|U UUG---GGGU U-AAA-GA-C UG-GGG-C(- UC-A)A-CUC -CA-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU A-GACUA-GA GUG-----UA G-GA-GAGGU UGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCAACUG-- ---------- ---------- ---------G 1501 CCU--AU-CA CUGACG-UUU AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -AC------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------G -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CA.)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UGU-A--(- GAGA-)-UAC -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UG-G-(UUAA -GU)-CCAGU AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U C--CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 GAUA-CU-C- U-AAC-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAC AGU-U-G-C- GA-UCU-C(G 2881 -UAA)GAGG- ---------- GA-GCUAA-U CUGAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCAAU)-G CCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AU-RCCA -RAA-G-UCG 3121 G-UAU-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A G-NU-GC-CC A-AGGC-AGG ACU-GA-UG- AUU-AG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.sp.DW1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma sp. str. DW-1 ATCC 43153. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma sp. str. DW-1 ATCC 43153. ORGANISM Spiroplasma sp. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43153 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24483 isolate_name= DW-1 BASE COUNT 396 a 302 c 422 g 335 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUNAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CCAU---U -AGCA-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-ACG---- ---------- -------A-C AU-U--U-U- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- AG-AA----U GU-UAAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAC--C- A--CUA---- 661 ----AUGG-- AUG---A-|G GGUGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AG- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CNCAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-CU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GGUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-UA --GGU-AUA( G----GAAAU -----G---) -AUA-CU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- GCG-CAG-AC -G|-GU-UU- 1261 A-AC-AAG|U UUG---GGGU C-AAA-UC-C UG-GAG-C(- UU-A)A-CUC -CA-G-UU-- 1321 -CGCC-UUGA A-AAC-UGUU A-AGCUA-GA GUG-----UA G-GA-GAGGU CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACN-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGACCG-- ---------- ---------- ---------G 1501 CCU--AU-CA CUGACG-UUU AG-G------ -------CN- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----UAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -AC------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------G -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(ANNNUN-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UNCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UG-G-(UUAA -GU)-CCAGU AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AU--UUAC-U C--CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 GAUA-CU-C- U-AAC-GG-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGN-N UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAC AGU-U-G-C- GA-UCU-C(G 2881 -CAA)GAGG- ---------- GA-GCUAA-U CUGAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UA-AU-ACCA -GAA-G-UCG 3121 G-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CC-GC-CC A-AGGU-AGG AUU-GA-UG- AUU-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.citri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma citri str. Maroc-R8-A2 ATCC 27556 (T). ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma citri str. Maroc-R8-A2 ATCC 27556 (T). ORGANISM Spiroplasma citri. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27556 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23942 isolate_name= Maroc-R8-A2 BASE COUNT 415 a 308 c 426 g 345 t 2882 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------UG (--CU----- ---------- ---------- 241 --------UG -)CG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CCAU---U -AGCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)U -GACU-G--A UAAUACC-GC 481 AU-ACG---- ---------- -------A-C AU-U--U-U- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- AG-AA----U GU-UAAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAU--C- A--CUA---- 661 ----AUGG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-CU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--AGUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-UA --AGU-AUA( G----GAAAU -----G---) -AUA-CU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- GCG-CAG-AC -G|-GU-UU- 1261 A-AC-AAG|U UUG---GGGU C-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-GUU- 1321 -CGCC-UUGA A-AAC-UGUU A-AGCUA-GA GUG-----UA G-GA-AAGGU CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGACUG-- ---------- ---------- ---------G 1501 CCU--AU-CA CUGACG-UUU AG-G------ -------CA- C-GNAA-GC- GC-AGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----UAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -AC------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------G -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GN-GAAACUC -AAA-GGAAU UG-NNGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AGUG--- CAA----AGC 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UG-G-(UUAA -GU)-CCAGU AA-------- CGAG-C--GC AACCC-UU-G |-CU--GUU- 2281 AG--UUAC-U C--CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------U-|A 2701 GAUA-CU-C- U-AAC-AG-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-A-UC -UU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC AGU-U-G-C- GA-UCU-C(G 2881 -UAA)GAGG- ---------- GA-GCUAA-U CUGAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UA-AU-ACCA -GCA-G-UCG 3121 G-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CC-GC-CC A-AGGU-AGG AUU-GA-UG- AUU-AG.... 3301 .......... GUAA-CAAGG UAUCC-G... .(.GA-A)CG .......... GAUCACCUCC 3361 UUUC|UN~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.cit2HP 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma citri str. R8A2HP. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma citri str. R8A2HP. ORGANISM Spiroplasma citri. REFERENCE 1 AUTHORS Grau,O. JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63781 isolate_name= R8A2HP BASE COUNT 426 a 313 c 434 g 352 t 2851 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ .UUUUUAAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--UCU-A C-CCAU---U -AGCG-G-GG 421 -GAU-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--A UAAUACC-GC 481 AU-ACG---- ---------- -------A-C AU-U--U-U- ---CUG-(-- --------GC 541 AU-------- -)-CAG---- AG-AA----U GU-UAAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAU--C- A--CUA---- 661 ----AUGG-- AUG---A-|G GAUGC----- -GG|----CG U--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UA-CG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUCGG-G-A 841 (CUGA-GA-C ACG)--GCCC -GAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG--C-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-CU-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--AGUC| UGUU-GU-AA 1021 --GG-GAA-- GA-ACAG-UA --AGU-AUA( G----GAAA- -----U---) GAUA-CU-UA 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- GCG-CAG-AC -G|-GU-UU- 1261 A-AC-AAG|U UUG---GGGU C-AAA-UC-C UG-GAG-C(- UC-A)A-CUC -CA-G-UUC- 1321 --GCC-UUGA A-AAC-UGUU A-AGCUA-GA GUG-----UA G-GA-AAGGU CGA-U|GGAA 1381 UU-CCAUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UCGACUG-- ---------- ---------- ---------G 1501 CCU--AU-CA CUGACG-UUU AG-G------ -------CA- C-GAAA-GC- GU-AGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----UAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-CGG -AC------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------G -UUCGG-UGC 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GUUGAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UC|--- ---------C ---AGUGU-- -AA----AGC 1981 -UGU-A--(- GAAA-)-UAC -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UG-G-(UUAA -GU)-CCAGU AA-------- CGAG-C--GC AACCC-UU-G |-CC--GUU- 2281 AG--UUAC-U CC-AU----- ---------- ---------- ---U(---AA ---GUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GA|G 2701 A-UA-CU-C- U-AAC-AG-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AG CAU-G-CC-C CUUAU-A-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC AGU-U-G-C- GA-UCU-C(G 2881 -UAA)GAGG- ---------- GA-GCUAA-U CUGAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAC-U- C)-GCCCUCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UA-AU-ACCA -GAA-G-UCG 3121 G-UAU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CC-GC-CC A-AGGU-AGG AUU-GA-UG- AUU-AGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GUAC G(AGA-A)CG UGCGGA--UG GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.3.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.3.5 SPP.IXODETIS_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.3.5 SPP.IXODETIS_ISOLATE. ORGANISM 2.16.9.3.5 SPP.IXODETIS_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Spp.ixodet 4376 bp RNA RNA 02-JUL-1998 DEFINITION Spiroplasma ixodetis str. Y-32 ATCC 33835. ACCESSION No information KEYWORDS No information. SOURCE Spiroplasma ixodetis str. Y-32 ATCC 33835. ORGANISM Spiroplasma ixodetis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33835 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24477 Former RDP Sids: Spp.sp.Y32 nat_host= tick isolate_name= Y-32 NB: former name Spiroplasma sp. BASE COUNT 400 a 273 c 395 g 338 t 2970 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CAUU---U -AGUG-G-GG 421 -AAU-AA-CU G--------- ------UU-- G(-GAAA-)C -GACA-G--C UAAUACC-GC 481 AU-AUG---- ---------- -------U-U AU-U--U-A- ---UUU-(-- --------GC 541 AA-------- -)-UGA---- UA-AA----U AA-UGAAA-- ---GGAGC-- ---------- 601 --(------- ---AUUU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----AUUG-- AUG---G-|G GAUGC----- -GG|----CG C--AUUA-A- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGU-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -NAA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-CU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GGUC| UGUU-GU-NA 1021 --GG-GAA-- GA-AGUG-CU --AGA-AUA( G----GAAAU -----G---) -AUU-UU-AG 1081 ---------- -------U-A UCGA-CCAU- A-CCU-U-AC C-AG--AAAG ---------C 1141 -CACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- GCG-UAG-AC -G|-GU-UU- 1261 U-GC-AAG|U CUG---AGGU U-AAA-UU-U AG-GGG-C(- UC-A)A-CCC -CN-A-AC-- 1321 -CGCC-UUGG A-AAC-UACA U-UACUA-GA GUA-----UA G-GA-GAGGU UAG-U|GGAA 1381 UU-UCAUGU- GUA-GCG(-G UGGNA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 CCU--AU-UA CUGACG-UUG UG-G------ -------CA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|A -GU-GU-UGC -C-------- ---------- 1681 -(-AU-GA)- ---------- ---------- ---------- ---------- -GGCAG-UGC 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-GUACU C|C|G-CCU- G-AGUAGUAU 1801 GCU-N---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... ........GC A-N-GN-GGU -UUAAUN-NN -(AUGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UA|--- ---------C ---CUUG--- CGA----AGC 1981 -UAU-A--(- GNGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-UCAGC AA-------- CGAA-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUGC-C AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------NG|G 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CUA --GU(-G--U AA)-GCU-A- -GAGG-A-AN 2761 G-UG-GGG-A NG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GA -UA--CAAAG AGU-C-G-C- UA-AAC-C(G 2881 -CGA)GGUC- ---------- AA-GCAAA-U CUCAA-AAAG -UC-A-GUC- UCAGUCCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCAAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGAG A--GU-UGG- CA-AU-GCCA -GAA-G-UCG 3121 G-UGU-C-CU -AA-CC---- ---------- ---------- -----(---- -GNNA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-A N-GN-CN-CA A-AGGC-AGG GUU-AA-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.4 M.PNEUMONIAE_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.4 M.PNEUMONIAE_GROUP. ORGANISM 2.16.9.4 M.PNEUMONIAE_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.4.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.4.1 UPL.UREALYTICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.4.1 UPL.UREALYTICUM_SUBGROUP. ORGANISM 2.16.9.4.1 UPL.UREALYTICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal7 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. Pi (serovar 6) ATCC 27818. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. Pi (serovar 6) ATCC 27818. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Howard,L.A., Zinner,C.L. and Stemke,G.W. TITLE Comparison of 16S rRNA genes within the T960 and parvo biovars of Ureaplasmas isolated from humans JOURNAL Int. J. Syst. Bacteriol. 44, 836-838 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27818 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06098|g507372 isolate_name= Pi (serovar 6) BASE COUNT 421 a 272 c 385 g 361 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGCUC ---------- 601 --(------- ---UUUG--- ---)------ ---------| UGGCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-CU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CC-U----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GUCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. 7 (serovar 1) ATCC 27813. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. 7 (serovar 1) ATCC 27813. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Howard,L.A., Zinner,C.L. and Stemke,G.W. TITLE Comparison of 16S rRNA genes within the T960 and parvo biovars of Ureaplasmas isolated from humans JOURNAL Int. J. Syst. Bacteriol. 44, 836-838 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27813 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06094|g507368 isolate_name= 7 (serovar 1) BASE COUNT 422 a 271 c 384 g 362 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGCUC ---------- 601 --(------- ---UUUG--- ---)------ ---------| UGGCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAA-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CC-U----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GUCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. U26 (serovar 14) ATCC 33697. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. U26 (serovar 14) ATCC 33697. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Howard,L.A., Zinner,C.L. and Stemke,G.W. TITLE Comparison of 16S rRNA genes within the T960 and parvo biovars of Ureaplasmas isolated from humans JOURNAL Int. J. Syst. Bacteriol. 44, 836-838 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33697 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06095|g507369 isolate_name= U26 (serovar 14) BASE COUNT 422 a 272 c 383 g 361 t 2938 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGCUC ---------- 601 --(------- ---UUUG--- ---)------ ---------| UGGCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAA-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-G--UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CC-C----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GUCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AAA-(UC -GGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. 27. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. 27. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Vekris,A., Bebear,C. and Stemke,G.W. TITLE Polymerase chain reaction using 16S rRNA gene sequences distinguishes the two biovars of Ureaplasma urealyticum JOURNAL J. Clin. Microbiol. 31, 824-830 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08642|g456680 (bases 11 to 1535) isolate_name= 27 BASE COUNT 442 a 289 c 406 g 386 t 2853 others ORIGIN 1 .......... .......... .......... .AAUUUUUAA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGCUC ---------- 601 --(------- ---UUUG--- ---)------ ---------| UGGCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CC-C----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CC-GC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GUCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 GCAAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAUCACCUCC 3361 UUUC|UUC~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.urealy 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. 960 ATCC 27618. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. 960 ATCC 27618. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27618 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23935 ATCC 27618 = NCTC 10177 isolate_name= 960 BASE COUNT 426 a 277 c 390 g 365 t 2918 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAAUUUUAA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---G-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GNAA-GU- GU-GGG-NA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CU-C----- ---------- 1681 -(-GA-AC)- ---------- ---------- ---------- --------GA -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----CGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUG--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GCCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-Y-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal5 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. 23 (serovar 2) ATCC 27814. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. 23 (serovar 2) ATCC 27814. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Howard,L.A., Zinner,C.L. and Stemke,G.W. TITLE Comparison of 16S rRNA genes within the T960 and parvo biovars of Ureaplasmas isolated from humans JOURNAL Int. J. Syst. Bacteriol. 44, 836-838 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27814 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06096|g507370 isolate_name= 23 (serovar 2) BASE COUNT 422 a 272 c 384 g 356 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (---U----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-A C-CUUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAA---A AG-AU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---G-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GAC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CU-C----- ---------- 1681 -(-GA-AC)- ---------- ---------- ---------- --------GA -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----CGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUG--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GCCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.ureal6 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma urealyticum str. 354 (serovar 5) ATCC 27817. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma urealyticum str. 354 (serovar 5) ATCC 27817. ORGANISM Ureaplasma urealyticum. REFERENCE 1 AUTHORS Robertson,J.A., Howard,L.A., Zinner,C.L. and Stemke,G.W. TITLE Comparison of 16S rRNA genes within the T960 and parvo biovars of Ureaplasmas isolated from humans JOURNAL Int. J. Syst. Bacteriol. 44, 836-838 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27817 Sequence information (bases 1 to 4376) Corresponding GenBank entry: U06097|g507371 isolate_name= 354 (serovar 5) BASE COUNT 421 a 271 c 385 g 357 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAAU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---G-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-AACG-CU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-C--GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CU-C----- ---------- 1681 -(-GA-AC)- ---------- ---------- ---------- --------GA -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CGA----CGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUG--- ---------- ---------- ---------- ----(---CU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAC UGC-U-G-C- AA-AAU-C(G 2881 -UAA)GAUG- ---------- AA-GCGAA-A CAGAA-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GCCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAA-G-CU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-U-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.divers 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma diversum str. A417. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma diversum str. A417. ORGANISM Ureaplasma diversum. REFERENCE 1 AUTHORS Harasawa,R. and Cassell,G.H. TITLE Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplasmas JOURNAL Int. J. Syst. Bacteriol. 46, 827-829 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78650 isolate_name= A417 BASE COUNT 424 a 282 c 397 g 375 t 2898 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)UG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-U-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GG 481 AU-AAU---- ---------- -------A-A CA-U---UUA ---CUU-(-- --------GC 541 AU-------- -)-GAG---U GA-AU----G UA--GAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AU- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-AU-A- -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACCA-CU --AAA-AUA( G----GAAA- -----U---) GAUU-UU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UUG---GUAU G-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UACG A-AUCUA-GA GUG-----UA G-CA-GAGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AUUCC CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGG -CU-CG---- ---------- 1681 -(-CU-UA)- ---------- ---------- ---------- -------UGA -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CAA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GCU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AUC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGU-U-AA -UA--CAAAC AGU-U-G-C- AA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CUGAU-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GCCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGGG- AUUAC-GUC- CUC-GGG-UC UGGUA----C 3061 ACACCGCCC- GCC-AAA--- --CUA-UGGG A--GC-CGG- UA-AU-AUCU -GAA-A-CCG 3121 U-ACU-G-UU -AA-CC---- ---------- ---------- -----(---- -UUUGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-A U-AC-GU-CU A-GGGU-AGG AUU-GG-GG- ACU-GGAG-U 3301 A---AAGUC- GUAA-CAAGG UAUCCC.... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.cangen 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma canigenitalium str. D6P-C. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma canigenitalium str. D6P-C. ORGANISM Ureaplasma canigenitalium. REFERENCE 1 AUTHORS Harasawa,R. and Cassell,G.H. TITLE Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplasmas JOURNAL Int. J. Syst. Bacteriol. 46, 827-829 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78648 isolate_name= D6P-C BASE COUNT 434 a 284 c 400 g 362 t 2896 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--AACU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GAUAU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-AA-G- -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AACG-UU --UAA-AUA( G----GAAA- -----U---) GAUU-UA-AA 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UC- 1261 U-GC-AAG|U UUG---GUAU G-AAA-UC-U AG-AUG-C(- UC-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGCA A-ACCUA-GA GUG-----UA G-UA-GGGAA UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CCACUUG-- ---------- ---------- ---------G 1501 ACU--AUACA CUGACG-CUU AG-G------ -------CU- C-GAAAAGU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUCA U--CA-UU-- -------A|A -AU-GU-CGA -CC-C----- ---------- 1681 -(-GG-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU G|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CUA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(CCGAUA-C A)--CGUAGA 1921 A-CCGUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---ACUG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAUCGA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGU-U-AU -UA--CAAAC UGU-U-G-C- CA-AAC-C(G 2881 -UAA)GGUG- ---------- AA-GCGAA-U CAGAU-AAAG -AU-A-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGAAAU)-G UCG-CGGGG- AUUAC-GUC- CUC-GGG-UC UGGUA----C 3061 ACACCGCCC- GCC-AAA--- --CUA-UGGG A--GC-UAG- UA-AU-AUCU -AAA-A-CCG 3121 U-GCU-G-UA -AA-CC---- ---------- ---------- -----(---- GUUCGG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A U-AC-GU-CU A-GGGU-AGG AUU-GG-GG- AUU-GGAG-U 3301 A---AAGUC- GUAA-CAAGG UAUCCC.... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.cati 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma cati str. F2. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma cati str. F2. ORGANISM Ureaplasma cati. REFERENCE 1 AUTHORS Harasawa,R. and Cassell,G.H. TITLE Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplasmas JOURNAL Int. J. Syst. Bacteriol. 46, 827-829 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78649 isolate_name= F2 BASE COUNT 430 a 280 c 392 g 374 t 2900 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUCCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-A-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-CA 481 AU-AAU---- ---------- -------A-A CA-U---UUG ---AUU-(-- --------GC 541 AU-------- -)-GAU---U GA-AU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AAUG-UU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AA 1081 ---------- -------C-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UC- 1261 U-AC-AAG|U UUG---GUAU U-AAA-UC-U AG-AUG-C(- UC-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA GUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUA-- ---------- ---------- ---------G 1501 ACU--AUCCA CUGACG-CUU AG-G------ -------CU- C-GAAAAGU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|A -AU-GU-CGG -CC-CG---- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- -------UGG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(C CAA)---G-A AU-GAAACUC -AAACGGCAU UG-ACGGG-G -A-G-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCGUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CAA----UGU 1981 -UAU-A--(- GAAA-)-UAU -A-ACG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AU ---UUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------A-C- C-AUC-GA-U A-CU-G-CU- --CU(-G--C AA)-AGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGU-U-AA -UA--CAAAG UGU-C-G-C- UA-CUU-C(G 2881 -UAA)GAAG- ---------- AU-GCCAA-U CACAU-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGGG- AUUAC-GUC- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GCC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-AUU-G-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-G U-AC-GU-AU A-GGGU-AGG AUU-GG-GG- AUU-GGGG-U 3301 A---AAGUC- GUAA-CAAGG UAUCCC.... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.felinu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma felinum str. FT2-B. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma felinum str. FT2-B. ORGANISM Ureaplasma felinum. REFERENCE 1 AUTHORS Harasawa,R. and Cassell,G.H. TITLE Phylogenetic analysis of genes coding for 16S rRNA in mammalian ureaplasmas JOURNAL Int. J. Syst. Bacteriol. 46, 827-829 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: D78651 isolate_name= FT2-B BASE COUNT 432 a 278 c 387 g 376 t 2903 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUCCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U---UUG ---AUC-(-- --------GC 541 AU-------- -)-GAU---U AA-AU----G UA--GAAA-- ---GUCGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCGA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--AUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AAUG-UU --AAG-AUA( G----GAAA- -----U---) GAUU-UU-AA 1081 ---------- -------C-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GG-UU- 1261 U-GU-AAG|U UUG---GUAU G-AAA-UC-U AG-AUG-C(- UC-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UGUA A-ACCUA-GA AUG-----UA G-UA-GGGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUA-- ---------- ---------- ---------G 1501 ACU--AUCCA CUGACG-CUU AG-G------ -------CU- C-GAAAAGU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|A -AU-GU-CGG -CC-C----- ---------- 1681 -(-GG-AU)- ---------- ---------- ---------- --------GG -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(C CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CAA----UGU 1981 -UAU-A--(- GAAA-)-UAU -A-ACG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AU ---UU---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-U- U-ACC-GA-U A-CU-G-CUU --CU(----C AA)-AGU-A- -GA-G-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGU-U-AA -UA--CAAAG UGU-C-G-C- GA-CUU-C(G 2881 -UAA)GAAG- ---------- AA-GCCAA-U CACAU-AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUUA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGGG- AUUAC-GUC- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GCC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-AUU-U-UU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-G U-AC-GU-CU A-GGGU-AGG AUC-GG-GG- AUU-GGAG-U 3301 A---AAGUC- GUAA-CAAGG UAUCCC.... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Upl.gallor 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ureaplasma gallorale. ACCESSION No information KEYWORDS No information. SOURCE Ureaplasma gallorale. ORGANISM Ureaplasma gallorale. REFERENCE 1 AUTHORS Stemke,G.W. and Robertson,J.A. TITLE Ureaplasma gallorale, an isolate from chickens, is most closely related to the human isolate, U. urealyticum JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1183-1184 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U62937|g1421819 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 442 a 299 c 405 g 376 t 2854 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........AU -UAAC-GC-- UGGC-GCC-A -UGC-CU--A AUAC-AUGCA A-AUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-CU (--UU----- ---------- ---------- 241 --------A- -)UG-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GUGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUU---A -AGUU-G-GG 421 -GAU-AA-CU A--------- ------AU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A CA-U--CAUU ---AUC-(-- --------GU 541 AU-------- -)-GAG---A AG-AU----G UA--GAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UUGG-- AUG---A-|G GGUGC----- -GA|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-ACU--(G -AGA)-GGUA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UUA UGAA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-U- -A)GA-UUGU AAA--GUUC| UUUU-AU-AU 1021 --GG-GAA-- GA-A-UG-CU --AAG-AUA( G----UAAA- -----U---) GAUUAUU-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-ACGA- GCG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UUG---GUAU G-AAA-UC-U AG-AUG-C(- UU-A)A-CGU -CU-A-GC-- 1321 -UGUA-UCAA A-AAC-UACA A-AUCUA-GA GUG-----UA G-UA-GAGAG UUG-G|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UAAAA)-UGC -GU-AGAU-A UA-CGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGC- -CAACUUG-- ---------- ---------- ---------G 1501 ACU--AU-CA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|A -AU-GU-CGG -CU-C----- ---------- 1681 -(-GA-AU)- ---------- ---------- ---------- --------GA -GUCGG-UGU 1741 UG--UA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-UG -(ACAAUA-C A)--CGUAGA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---AUUG--- CAA----UGC 1981 -UAU-A--(- GAAA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-UA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CUA --CC(-G--C AA)-GGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-U-AA -UA--CAAAU UGC-U-G-C- AA-UAC-C(G 2881 -UAA)GGUG- ---------- GA-GCGAA-U CAAA--AAAG -UU-A-GUC- UCAGUUCGGA 2941 U-AGAGGGC- (UGCAAU-U- C)-GUCCUCU -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGGG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 C-AAC-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A U-GC-GU-CU A-GGGU-AGG AUC-GG-UG- ACU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UAUCC-CUAC C(UGC-A)GC CCGGGG--GA UCCACUAGUU 3361 CUAG|AGCGG CCGCACCGCG GUGGAGCUCC AGCUUUUGUC G|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.4.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.4.2 M.IOWAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.4.2 M.IOWAE_SUBGROUP. ORGANISM 2.16.9.4.2 M.IOWAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.volis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma volis str. IL-372. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma volis str. IL-372. ORGANISM Mycoplasma volis. REFERENCE 1 AUTHORS Brown,D.R. TITLE 16S rRNA gene of Mycoplasma volis (proposed species novum) JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22415|g726291 nat_host= Microtus ochogaster isolate_name= IL-372 BASE COUNT 396 a 279 c 405 g 355 t 2941 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -UAAU-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--UU----- ---------- ---------- 241 --------UA -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CAU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AA----- ---------- -------U-A CA-U--UACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AU----G UU--UAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UAAG-- AUU---G-|G GGUGC----- -GG|----CG U--AUCA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----CG-CG 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----GU-G-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UAUAU -U)GA-UUGU AAA--GUUC| UUUU-AU-UG 1021 --GA-GAC-- GA-AUUG-CA --AGG-AGA( G----GAAA- -----U---) GCUC-CU-UG 1081 ---------- -------U-U U-GA-CUGU- A-UCC-A-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CAUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-UU- 1261 U-GC-AAG|U CUG---GUGU U-AAA-UG-C AG-CUG-C(- UU-A)A-CGG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UGCA A-GUCUA-GA GUG-----CA G-UA-GGGAG UUC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -GAACUUG-- ---------- ---------- ---------G 1501 GCU--GU-AA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-GU-CGG -CA-C----- ---------- 1681 -(GGA-AU)- ---------- ---------- ---------- --------GU -GUCGG-UGU 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGAUA-C A)--CGUAAA 1921 A-CCUUA-CC CAG-GU-UUG ACA-UC|--- ---------C ---UUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---UC ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGU-GA-G A-CU-G-CCA --GC(-G--U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-A-UC -UG--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC UGU-C-G-C- CA-ACC-C(G 2881 -UAA)GGGG- ---------- GA-GCUAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCCAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-ACCU -GAA-A-CCG 3121 U-UAG-G-CU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.penetrns 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma penetrans str. GTU-54-6A1. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma penetrans str. GTU-54-6A1. ORGANISM Mycoplasma penetrans. REFERENCE 1 AUTHORS Behbahani,N., Blanchard,A., Cassell,G.H. and Montagnier,L. TITLE Phylogenetic analysis of Mycoplasma penetrans, isolated from HIV-infected patients JOURNAL FEMS Microbiol. Lett. 109, 63-66 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L10839 isolate_name= GTU-54-6A1 BASE COUNT 412 a 280 c 395 g 365 t 2924 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GGAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-CA (--CU----- ---------- ---------- 241 --------UG -)UG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- UAA--CAU-A C-CUUU---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------GU-- U(-GAAA-)A -ACUA-G--C UAAUACC-GC 481 AU-AG----- ---------- -------G-A CA-U--UACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AU----G UU--UAAA-- ---GUUCG-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UAAG-- AUU---G-|A GGUGU----- -GG|----CA U--AUCA-G- AUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GUC-UA- UGA------- -----CG-UG 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----AA-A-- CAG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-A-AC-G-A C-GAA--G-G UU(U-UU-U- -A)AA-UUGU AAA--GUUC| UUUU-AU-UG 1021 --G--GAC-- GA-AUUG-UA --AGA-AGA( G----GAAA- -----U---) GCUU-UU-UA 1081 ---------- -------U-U U-GA-CUGU- A-CCC-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GCGA- GCG-CAG-GC -G|-GA-UU- 1261 U-AC-AAG|U CUG---GUGU U-AAA-UA-U AG-CUG-C(- CC-A)A-CAG -UU-A-UA-- 1321 -UGCA-UUGG A-AAC-UGUA A-GUCUA-GA GUG-----CA G-UA-GAGAG UUU-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCU--GU-UA CUGACG-CUU AG-C------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-CU-UGG -UA-C----- ---------- 1681 -(GGG-AU)- ---------- ---------- ---------- --------GU -AUCAG-GAU 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGAUA-C A)--CGUAAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UCA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --GC(-G--U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A GU-AGC--UC -A-AAUC-AU CAU-G-CC-C UUUAU-A-UC -CA--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC UGU-U-G-C- CA-AUC-A(G 2881 -CAA)UGAG- ---------- GA-GCUAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-CGAGGGC- (UGCAAU-U- C)-GUCCUCG -UGAGGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-AAA-(UC -AGCCAU)-G UUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG ---GC-UGG- UA-AU-ACCU -AAA-A-CCG 3121 U-UAA-G-CU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UA- AUU-GGAG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.muris 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma muris str. RIII4 ATCC 33757 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma muris str. RIII4 ATCC 33757 (T). ORGANISM Mycoplasma muris. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J.L ., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33757 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23939 isolate_name= RIII4 BASE COUNT 420 a 269 c 398 g 363 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNAAUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--GC----- ---------- ---------- 241 --------AA -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAN--NAU-A C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GA-- U(-GAAA-)A -UCUA-G--C UAAUACC-GC 481 AU-AG----- ---------- -------G-G CA-U--UAUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-AU----G UU--UAAA-- ---GUUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAA--C- G--CUU---- 661 ----UUAG-- NNU---G-|G GGUGC----- -GG|----UG U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GUC-AA- UGA------- -----UG-CA 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G UC(U-UAUAU -A)GA-UUGU AAA--AUUC| UUUU-AU-UG 1021 --GA-GAC-- GA-AUGG-UA --GGA-AUA( G----GAAA- -----U---) NAUU-UC-UA 1081 ---------- -------U-U U-GA-CUGU- A-UCC-A-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGN|G UAAA-GCGA- GCG-CGG-GC -G|-GA-UU- 1261 U-GC-AAG|U CUN---GUGU U-AAA-UA-C AA-CUG-C(- UU-A)A-CGG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UGCA A-GUCUA-GA GUG-----UA G-UA-GGGAG UUU-U|GGAA 1381 CU-CNAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCU--AC-AA CUGACG-CUU AG-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-GU-UGG -CA-C----- ---------- 1681 -(GGA-AU)- ---------- ---------- ---------- --------GU -GUCGG-UGU 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACAAUA-C A)--CGUAAA 1921 A-CCUUA-CC UAG-GU-UUG ACA-UC|--- ---------U ---CCUG--- CAA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --GC(-G--U AA)-GCN-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -UA--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC UGU-U-G-C- AA-ACC-A(G 2881 -UAA)UGGG- ---------- GA-GCCAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGACAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-ACCU -AAA-A-CCG 3121 U-UAA-G-AU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGU-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.iowae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma iowae str. 695 ATCC 33552. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma iowae str. 695 ATCC 33552. ORGANISM Mycoplasma iowae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J.L ., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33552 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24293 ATCC 33552 = NCTC 10185 (T) isolate_name= 695 BASE COUNT 408 a 275 c 396 g 357 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--NAU-A C-CUAU---U -AGCN-N-NG 421 -GAU-AA-CU G--------- ------GA-- U(-GAAA-)A -UCUA-G--C UAAUACC-GC 481 AU-AG----- ---------- -------G-A CA-U--UGUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A GA-AU----G UU--UAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UUAG-- ANU---G-|G GGUGC----- -GG|----UN U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----UG-CA 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-NACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G UC(U-UAUAU -A)GA-UUGU AAA--AUCC| UUUU-NN-UG 1021 --GA-GAC-- GA-ACGG-CA --GGA-AGA( G----GAAA- -----U---) GCUU-UC-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCC-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -CU-GGGN|G UAAA-GAGA- NCG-CGG-GC -G|-GA-UC- 1261 U-GC-AAG|U CUG---GUGU G-AAA-UA-C AA-CUG-C(- UU-A)A-CGG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UGCA A-AUCUA-GA GUG-----UA G-UA-GAGAG UUU-U|GGAA 1381 CU-CNAUGU- GGA-GCG(-G UGNNA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUG-- ---------- ---------- ---------G 1501 GCU--AU-UA CUGACG-CUU AU-G------ -------CU- N-GNAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-GU-UGG -CA-U----- ---------- 1681 -(GGA-AU)- ---------- ---------- ---------- --------AU -GUCGG-CGU 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UN-ACGGG-G -A-C-CC--G 1861 N-A--CA-AN UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACAAUA-C A)--CGUAAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GU-G-(UUAA -GU)-CCCGC AN-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --GC(-G--C AA)-GCN-N- -GAGG-A-AG 2761 G-UN-AGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CA--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-C-GG -UA--CAAAC UGU-C-G-C- AA-ACC-A(G 2881 -UAA)UGGG- ---------- AA-GCCAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-ACCU -AAA-A-CCG 3121 U-UAA-G-AU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGU-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.iowaePAV 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma iowae str. PPAV. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma iowae str. PPAV. ORGANISM Mycoplasma iowae. REFERENCE 1 AUTHORS Grau,O., Laigret,F., Carle,P., Tully,J.G. and Bove,J.M. TITLE Identification of a Plant-Derived Mollicute as a Strain of an Avian Pathogen, Mycoplasma iowae, and Its Implications for Mollicute Taxonomy JOURNAL Int. J. Syst. Bacteriol. 41, 473-478 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X55271 isolate_name= PPAV BASE COUNT 423 a 292 c 424 g 372 t 2865 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CAU-A C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------GA-- U(-GAAA-)A -UCUA-G--C UAAUACC-GC 481 AU-AG----- ---------- -------G-A CA-U--UGUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A GA-AU----G UU--UAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UUAG-- AUU---G-|G GGUGC----- -GG|----UG U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----UG-CA 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G UC(U-UAUAU -A)GA-UUGU AAA--AUCC| UUUU-AU-UG 1021 --GA-GAC-- GA-ACGG-CA --GGA-AGA( G----GAAA- -----U---) GCUU-UC-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCC-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -CU-GGGC|G UAAA-GAGA- GCG-CGG-GC -G|-GA-UC- 1261 U-GC-AAG|U CUG---GUGU G-AAA-UA-C AA-CUG-C(- UU-A)A-CGG -U--G-UA-- 1321 -UGCA-UUGG A-AAC-UGCA A-AUCUA-GA GUG-----UA G-UA-GAGAG UUU-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUG-- ---------- ---------- ---------G 1501 GCU--AU-UA CUGACG-CUU AU-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-GU-UGG -CA-U----- ---------- 1681 -(GGA-AU)- ---------- ---------- ---------- --------AU -GUCGG-CGU 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACAAUA-C A)--CGUAAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --GC(-G--C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CA--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-U-GG -UA--CAAAC UGU-C-G-C- AA-ACC-A(G 2881 -UAA)UGGG- ---------- AA-GCCAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-ACCU -AAA-A-CCG 3121 U-UAA-G-AU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGU-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(GGA-A)UG UGGGGG--UG GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.iowae4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma iowae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma iowae. ORGANISM Mycoplasma iowae. REFERENCE 1 AUTHORS Grau,O., Laigret,F., Carle,P., Tully,J.G., Rose,D.L. and Bove ,J.M. TITLE Identification of a plant-derived mollicute as a strain of an avian pathogen, Mycoplasma iowae, and its implications for mollicute taxonomy JOURNAL Int. J. Syst. Bacteriol. 41 (4), 473-478 (1991) STANDARD No information REFERENCE 2 AUTHORS Laigret,F., Deaville,J., Bove,J. and Bradbury,J.M. TITLE Specific detection of Mycoplasma iowae using polymerase chain reaction JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U29676|g942588 (bases 2619 to 4128) BASE COUNT 423 a 291 c 424 g 372 t 2866 others ORIGIN 1 .......... .......... .......... ........UG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UAGC-GGG-A -UGC-CU--A AUAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UG (--CU----- ---------- ---------- 241 --------UG -)CA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--CAU-A C-CUAU---U -AGUG-G-GG 421 -GAU-AA-CU G--------- ------GA-- U(-GAAA-)A -UCUA-G--C UAAUACC-GC 481 AU-AG----- ---------- -------G-A CA-U--UGUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A GA-AU----G UU--UAAA-- ---GUUGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCAA--C- G--CUU---- 661 ----UUAG-- AUU---G-|G GGUGC----- -GG|----UG U--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-AA- UGA------- -----UG-CA 781 U-AG-C-UG| -U-GCU--(G -AGA)-GGCA ----GA-A-- CAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UUC -(UACG)--G AAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UCCC-GC-GU 961 G-G-AU-G-A U-GAA--G-G UC(U-UAUAU -A)GA-UUGU AAA--AUCC| UUUU-AU-UG 1021 --GA-GAC-- GA-ACGG-CA --GGA-AGA( G----GAAA- -----U---) GCUU-UC-UG 1081 ---------- -------U-G U-GA-CGGU- A-UCC-U-UU G-AA--UAAG ---------U 1141 -AUCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GAUG-C-- 1201 AAG-CGUUAU UC-GGAUUUA -CU-GGGC|G UAAA-GAGA- GCG-CGG-GC -G|-GA-UC- 1261 U-GC-AAG|U CUG---GUGU G-AAA-UA-C AA-CUG-C(- UU-A)A-CGG -U--G-UA-- 1321 -UGCA-UUGG A-AAC-UGCA A-AUCUA-GA GUG-----UA G-UA-GAGAG UUU-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUG-- ---------- ---------- ---------G 1501 GCU--AU-UA CUGACG-CUU AU-G------ -------CU- C-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG U--AA-UU-- -------A|A -AU-GU-UGG -CA-U----- ---------- 1681 -(GGA-AU)- ---------- ---------- ---------- --------AU -GUCGG-CGU 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-AUUAC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACAAUA-C A)--CGUAAA 1921 A-CCUUA-CC UGG-GU-UUG ACA-UC|--- ---------C ---UUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --GC(-G--C AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-A-UC -CA--GGGC- 2821 C-GCA-AA-C GUG--CUACA AUGGU-U-GG -UA--CAAAC UGU-C-G-C- AA-ACC-A(G 2881 -UAA)UGGG- ---------- AA-GCCAA-U CAGAG-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-ACCU -AAA-A-C-G 3121 U-UAA-G-AU -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGU-C-U U-GC-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(GGA-A)UG UGGGGG--UG GAUCACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.4.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.4.3 M.GENITALIUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.4.3 M.GENITALIUM_SUBGROUP. ORGANISM 2.16.9.4.3 M.GENITALIUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.genitali 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma genitalium str. G37 (J.G. Tully) ATCC 33530 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma genitalium str. G37 (J.G. Tully) ATCC 33530 (T). ORGANISM Mycoplasma genitalium. REFERENCE 1 AUTHORS Fraser,C.M., Gocayne,J.D., White,O., Adams,M.D., Clayton,R.A, Clayton,R.A., Fleischmann,R.D., Bult,C.J., Kerlavage,A.R., Sutton,G., Kelley,J.M., Fritchman,J.L., Weidman,J.F., Small ,K.V., Sandusky,M., Fuhrmann,J.L., Nguyen,D.T., Utterback,T .R., Saudek,D.M., Phillips,C.A., Merrick,J.M., Tomb,J.-F., Dougherty,B.A., Bott,K.F., Hu,P.-C., Lucier,T.S., Peterson,S .N., Smith,H.O., Hutchison,C.A.,III and Venter,J.C. TITLE The minimal gene complement of Mycoplasma genitalium JOURNAL Science 270 (5235), 397-403 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33530 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U39693|g1045820 (bases 4607 to 6125) isolate_name= G37 (J.G. Tully) BASE COUNT 426 a 271 c 394 g 370 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)A -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-AG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U UA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-UG 781 U-AG-C-UA| -U-GCU--(G -AGA)-AGUA ----GA-A-- UAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UUUUU --)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUGA-CU --CUA-GCA( G----GCAA- -----U---) GGCU-GG-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCACU-UU G-AA--UAAG ---------U 1141 -GACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 G-AA-AAG|U CUG---GUGU U-AAA-GG-C AG-CUG-C(- UU-A)A-CAG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UAUC A-GUCUA-GA GUG-----UG G-UA-GGGAG UUU-U|GGAA 1381 UU-UCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUAG A--UA-CU-- -------A|G -CU-GU-CGG -AG------- ---------- 1681 -(CGA-UC)C ---------- ---------- ---------- ---------C -UUCGG-UAG 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC U|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGU 1981 -UAU-G--(- GAAA-)-CAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UN|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-NN-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-U- U-AAC-GA-G A-CU-G-CUA --AU(-G--U AA)-AUU-G- -GAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-A-G-C- CA-ACU-U(G 2881 -UAA)AAGU- ---------- GA-GCAAA-U CUGA--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GUCCUCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAA A--GC-UGG- UA-AU-AUUU -AAA-A-ACG 3121 U-GUU-G-CU -NA-CC---- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CA A-GGAU-AGC ACC-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.genital2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma genitalium str. G37. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma genitalium str. G37. ORGANISM Mycoplasma genitalium. REFERENCE 1 AUTHORS Borre,M.B. and Jensen,J.S. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77334|g459531 isolate_name= G37 BASE COUNT 438 a 278 c 401 g 373 t 2886 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)A -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-AG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U UA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-UG 781 U-AG-C-UA| -U-GCU--(G -AGA)-AGUA ----GA-A-- UAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UUUUU --)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUGA-CU --CUA-GCA( G----GCAA- -----U---) GGCU-GG-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCACU-UU G-AA--UAAG ---------U 1141 -GACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 G-AA-AAG|U CUG---GUGU U-AAA-GG-C AG-CUG-C(- UU-A)A-CAG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UAUC A-GUCUA-GA GUG-----UG G-UA-GGGAG UUU-U|GGAA 1381 UU-UCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUAG A--UA-CU-- -------A|G -CU-GU-CGG -AG------- ---------- 1681 -(CGA-UC)C ---------- ---------- ---------- ---------C -UUCGG-UAG 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC U|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGU 1981 -UAU-G--(- GAAA-)-CAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-U- U-AAC-GA-G A-CU-G-CUA --AU(-G--U AA)-AUU-G- -GAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-A-G-C- CA-ACU-U(G 2881 -UAA)AAGU- ---------- GA-GCAAA-U CUGA--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GUCCUCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAA A--GC-UGG- UA-AU-AUUU -AAA-A-ACG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CA A-GGAU-AGC ACC-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)CG .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.genital3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma genitalium str. G37 [gene=rrnA gene]. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma genitalium str. G37 [gene=rrnA gene]. ORGANISM Mycoplasma genitalium. REFERENCE 1 AUTHORS Kelley,J.M., Fritchman,J.L., Weidman,J.F., Small,K.V., Sandusky,M., Fuhrmann,J.L., Nguyen,D.T., Utterback,T.R., Saudek,D.M., Phillips,C.A., Merrick,J.M., Tomb,J.-F., Dougherty,B.A., Bott,K.F., Hu,P.-C., Lucier,T.S., Peterson,S .N., Smith,H.O., Hutchison,C.A.,III and Venter,J.C. Fraser,C.M., Gocayne,J.D., White,O., Adams,M.D., Clayton,R.A ., Fleischmann,R.D., Bult,C.J., Kerlavage,A.R., Sutton,G., TITLE The minimal gene complement of Mycoplasma genitalium JOURNAL Science 270 (5235), 397-403 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L43967 (bases 170009 to 171527) operon= rrnA gene isolate_name= G37 BASE COUNT 442 a 284 c 409 g 384 t 2857 others ORIGIN 1 .......... .......... ........CA AUUUUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)A -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-AG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U UA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-UG 781 U-AG-C-UA| -U-GCU--(G -AGA)-AGUA ----GA-A-- UAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(--UUUUU --)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUGA-CU --CUA-GCA( G----GCAA- -----U---) GGCU-GG-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCACU-UU G-AA--UAAG ---------U 1141 -GACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 G-AA-AAG|U CUG---GUGU U-AAA-GG-C AG-CUG-C(- UU-A)A-CAG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UAUC A-GUCUA-GA GUG-----UG G-UA-GGGAG UUU-U|GGAA 1381 UU-UCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUAG A--UA-CU-- -------A|G -CU-GU-CGG -AG------- ---------- 1681 -(CGA-UC)C ---------- ---------- ---------- ---------C -UUCGG-UAG 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC U|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGU 1981 -UAU-G--(- GAAA-)-CAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-U- U-AAC-GA-G A-CU-G-CUA --AU(-G--U AA)-AUU-G- -GAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-A-G-C- CA-ACU-U(G 2881 -UAA)AAGU- ---------- GA-GCAAA-U CUGA--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GUCCUCA -UGAAGC-UG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAA A--GC-UGG- UA-AU-AUUU -AAA-A-ACG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- UUUAUU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CA A-GGAU-AGC ACC-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)CG UGGGGG--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pneumon2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pneumoniae str. FH ATCC 15531. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pneumoniae str. FH ATCC 15531. ORGANISM Mycoplasma pneumoniae. REFERENCE 1 AUTHORS Hyman,H.C., Gafny,R., Glaser,G. and Razin,S. TITLE Promoter of the Mycoplasma pneumoniae rRNA operon JOURNAL J. Bacteriol. 170, 3262-3268 (1988) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15531 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M21374 ATCC 15531 = NCTC 10119 (T) isolate_name= FH BASE COUNT 81 a 50 c 73 g 73 t 4099 others ORIGIN 1 .......... .......... .......... .AUUUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-GG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U CA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- U......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pneumoni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pneumoniae str. FH ATCC 15531. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pneumoniae str. FH ATCC 15531. ORGANISM Mycoplasma pneumoniae. REFERENCE 1 AUTHORS Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., TITLE classification A phylogenetic analysis of the mycoplasmas: Basis for their JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 15531 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M29061 ATCC 15531 = NCTC 10119 (T) isolate_name= FH BASE COUNT 426 a 272 c 396 g 367 t 2915 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-GG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U CA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-UG 781 U-AG-C-UA| -U-GCU--(G -AGA)-AGUA ----GA-A-- UAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-A- -A)GA-UUGU AAA--GUUC| AUUU-AU-UU 1021 --GG-GAA-- GA-AUGA-CU --UUA-GCA( G----GUAA- -----U---) GGCU-AG-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCAUU-UU G-AA--UAAG ---------U 1141 -GACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 G-AA-AAG|U CUG---GUGU U-AAA-GG-C AG-CUG-C(- UU-A)A-CAG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UAUU A-AUCUA-GA GUG-----UG G-UA-GGGAG UUU-U|GGAA 1381 UU-UCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-NA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUAG A--UA-CU-- -------A|G -CU-GU-CGG -GG------- ---------- 1681 -(CGA-UC)C ---------- ---------- ---------- ---------C -CUCGG-UAG 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC U|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGU 1981 -UAU-G--(- GAAA-)-CAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CUA --AU(-G--C AA)-AUU-G- -GAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-C-G-C- CA-GCU-U(G 2881 -UAA)AAGU- ---------- GA-GCAAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GUCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAA A--GC-UGG- UA-AU-AUUU -AAA-A-ACG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -AUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CA A-GGAU-AGC ACC-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pneumon3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pneumoniae str. M129. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pneumoniae str. M129. ORGANISM Mycoplasma pneumoniae. REFERENCE 1 AUTHORS Himmelreich,R., Hilbert,H., Plagens,H., Pirkl,E., Li,B.C. and Herrmann,R. TITLE Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae JOURNAL Nucleic Acids Res. 24 (22), 4420-4449 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U00089 (bases 86688 to 88150) isolate_name= M129 BASE COUNT 425 a 272 c 398 g 368 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GU----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CUUA---U -AAUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- U(-GAAA-)G -ACUA-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-A CU-U--U-GG ---UUC-(-- --------GC 541 AU-------- -)-GAA---U CA-AA----G UU--GAAA-- ---GGACCU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GGGUU--C- G--UUA---- 661 ----UUUG-- AUG---A-|G GGUGC----- -GC|----CA U--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-UG 781 U-AG-C-UA| -U-GCU--(G -AGA)-AGUA ----GA-A-- UAG-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-A- -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUGA-CU --UUA-GCA( G----GUAA- -----U---) GGCU-AG-AG 1081 ---------- -------U-U U-GA-CUGU- A-CCAUU-UU G-AA--UAAG ---------U 1141 -GACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 G-AA-AAG|U CUG---GUGU U-AAA-GG-C AG-CUG-C(- UU-A)A-CAG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UAUU A-AUCUA-GA GUG-----UG G-UA-GGGAG UUU-U|GGAA 1381 UU-UCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGAAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUAG A--UA-CU-- -------A|G -CU-GU-CGG -GG------- ---------- 1681 -(CGA-UC)C ---------- ---------- ---------- ---------C -CUCGG-UAG 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC U|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGU 1981 -UAU-G--(- GAAA-)-CAU -A-AUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CA ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CUA --AU(-G--C AA)-AUU-G- -GAGG-A-AG 2761 G-AA-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-C-G-C- CA-GCU-U(G 2881 -UAA)AAGU- ---------- GA-GCAAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GUCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAA A--GC-UGG- UA-AU-AUUU -AAA-A-ACG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -AUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CA A-GGAU-AGC ACC-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.4.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.4.4 M.GALLISEPTICUM_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.4.4 M.GALLISEPTICUM_SUBGROUP. ORGANISM 2.16.9.4.4 M.GALLISEPTICUM_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sualvi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sualvi.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sualvi. ORGANISM Mycoplasma sualvi. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44765|g1174214 BASE COUNT 414 a 292 c 407 g 345 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----CG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCCA---A -AGUG-G-GG 421 -GAC-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-A AU-G--CACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AG-CA----U UU--UAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAC--C- G--CUA---- 661 ----UGGG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( -U-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-AU -G)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUUG-CC --AAU-AGA( G----GAAA- -----U---) GCUA-UU-GG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AA-C AA-CUG-C(- UU-A)A-CGG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUG-----UG G-UA-GAGAG UUC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGA- -GAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -GU-GU-CGG -GG-C----- ---------- 1681 -(-GA-UC)- ---------- ---------- ---------- --------AC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AU-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CCA --AC(-G--C AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AU -UA--CAAAC AGU-U-G-C- AA-AUC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CUGC--AAAG -AU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGU-AGG ACU-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pirum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pirum str. HRC/70-159 ATCC 25960 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pirum str. HRC/70-159 ATCC 25960 (T). ORGANISM Mycoplasma pirum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J.L ., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 25960 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23940 isolate_name= HRC/70-159 BASE COUNT 416 a 283 c 408 g 356 t 2913 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAUUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-A C-CCUA---C -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A AU-G--UACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AA-CA----U UU--UAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAC--C- G--CUA---- 661 ----UAGG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UA-AU -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-AUGG-CU --AGC-AGA( G----GAAA- -----U---) GAUG-UU-AG 1081 ---------- -------U-U U-GA-CGGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AA-C AA-CUG-C(- UU-A)A-CGG -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUG-----UG G-UA-GAGAG UUC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGA- -GAACUUA-- ---------- ---------- ---------G 1501 GCC--AU-AA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-NA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CC-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|G -AU-GU-CGG -GG-U----- ---------- 1681 -(-AA-AC)- ---------- ---------- ---------- --------GC -CUCGG-UGU 1741 CG--UA---- --GC-(UAA- ---C)G-CA- UUAA-ACAUC C|C|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUU -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AU-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-U A-CU-G-CCA --AC(-G--C AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AU -UA--CAAAC AGU-U-G-C- GA-AUC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CUGC--AAAG -AU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGU-AGG ACC-GG-UG- AUU-GGAG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.testudin 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma testudinis str. 010 ATCC 43263 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma testudinis str. 010 ATCC 43263 (T). ORGANISM Mycoplasma testudinis. REFERENCE 1 AUTHORS Brown,D.R., Crenshaw,B.C., McLaughlin,G.S., Schumacher,I.M., McKenna,C.E., Klein,P.A., Jacobson,E.R. and Brown,M.B. TITLE Taxonomic analysis of the tortoise mycoplasmas Mycoplasma agassizi and Mycoplasma testudinis by 16S rRNA gene sequence comparison JOURNAL Int. J. Syst. Bacteriol. 45, 348-350 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43263 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09788|g497252 (bases 1333 to 1411) ATCC 43263 (T) = NCTC 11701 biol_source= Testudo graeca (turtle) cloaca isolate_name= 010 BASE COUNT 408 a 276 c 388 g 344 t 2960 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ..AU-AUGCA A-GUC-GAUC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-G C-CCUA---U -AGCG-G-GG 421 -GAC-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A GU-A--ACUU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AU-UA----C UU--UAAA-- ---GGUCC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GGAC--C- A--CUA---- 661 ----UAGG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( -U-AAC-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-AU -G)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAU-- GA-AUGA-UU --AGC-AAA( G-----GAAA -----U---) GUUG-CU-AG 1081 ---------- -------U-U U-GA-CCGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-ACAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AU-C AA-CUG-C(- UU-A)A-CGG -UU-G-AA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUA-----UG G-UA-GAGAG UUC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -U-U-GC(-G AA-G)GCGA- -GAACUUA-- ---------- ---------- ---------G 1501 GCC--AC-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -GU-GU-CGG -GG------- ---------- 1681 -(CGA-UC)A ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 UG--AA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUC C|U|G-CCU- G-GGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UUGG--- CAA----AGC 1981 UCCA-U-A(- GAAA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-U |AUU--GCU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGC-GA-G A-CU-G-CCA --AC(-G--U AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AU -UA--CAAAC AGU-U-G-C- CA-AAC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUGU--AAAG -AU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCUAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGA- UA-GU-GUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGC-AAG AUC-GG-UG- AUU-GGAG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.imitans 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma imitans str. 4229. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma imitans str. 4229. ORGANISM Mycoplasma imitans. REFERENCE 1 AUTHORS Boyle,J.S., Bradbury,J.M. and Morrow,C.J. TITLE Further evidence that M. imitans is closely related to M. gallisepticum JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24103 isolate_name= 4229 BASE COUNT 420 a 274 c 393 g 352 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-G C-CUUA---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A GU-U--ACCU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AU-AA----C UU--UAAA-- ---GAAGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----UAAG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-UU -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACAG-UU --AGU-AGA( G----UGGAA -----A---) GCUA-CU-AA 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-ACAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AG-C AA-UUG-C(- UU-A)A-CGA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUU-----UG G-UA-GAGAG UCC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -GGACUUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -GU-GU-CGG -AG------- ---------- 1681 -(CGA-AU)A ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUC C|U|G-CCU- G-AGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UGGG--- CGA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAC-GA-G A-CU-G-CCA --AC(-G--U AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-U-G-C- AA-AUC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGU-AGG GCC-GG-UG- AUU-GGAG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.gallisep 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gallisepticum str. A5969. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallisepticum str. A5969. ORGANISM Mycoplasma gallisepticum. REFERENCE 1 AUTHORS Woese,C.R. and Gutell,R.R. TITLE ribosomal RNA Evidence for several higher order structural elements in JOURNAL Proc. Natl. Acad. Sci. U.S.A. 86, 3119-3122 (1989) STANDARD No information REFERENCE 2 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T. G., Van Etten,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M22441 isolate_name= A5969 BASE COUNT 438 a 290 c 414 g 377 t 2857 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-G C-CUUA---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A GU-U--AACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AU-AA----C UU--UAAA-- ---GAAGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----UAAG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-UU -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACAG-UU --AGU-AGA( G----UGGAA -----A---) GCUA-UU-AA 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-ACAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AG-C AA-UUG-C(- UU-A)A-CGA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUU-----UG G-UA-GAGAG UCC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -GGACUUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -GU-GU-CGG -AG------- ---------- 1681 -(CGA-AU)A ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUC C|U|G-CCU- G-AGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UGGG--- CGA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAC-GA-G A-CU-G-CCA --AC(-G--U AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-U-G-C- AA-AUC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGU-AGG GCC-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)CG UGGGGG--UG GAUUACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.gallise3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gallisepticum str. S6 [gene=rrn16 operon]. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallisepticum str. S6 [gene=rrn16 operon]. ORGANISM Mycoplasma gallisepticum. REFERENCE 1 AUTHORS Skamrov,A., Goldman,M., Klasova,J. and Beabealashvilli,R. TITLE Mycoplasma gallisepticum 16S rRNA genes JOURNAL FEMS Microbiol. Lett. 128, 321-325 (1995) STANDARD No information REFERENCE 2 AUTHORS Scamrov,A. and Beabealashvilli,R. TITLE Mycoplasma Gallisepticum strain S6 genome contains three regions hybridizing with 16S rRNA and two regions hybridizing with 23S and 5S rRNA JOURNAL FEBS Lett. 291, 71-74 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08896 operon= rrn16 operon isolate_name= S6 BASE COUNT 438 a 290 c 414 g 377 t 2857 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~UUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-G C-CUUA---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A GU-U--AACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AU-AA----C UU--UAAA-- ---GAAGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----UAAG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( GU-AAU-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-UU -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACAG-UU --AGU-AGA( G----UGGAA -----A---) GCUA-UU-AA 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-ACAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AG-C AA-UUG-C(- UU-A)A-CGA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUU-----UG G-UA-GAGAG UCC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -GGACUUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -GU-GU-CGG -AG------- ---------- 1681 -(CGA-AU)A ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUC C|U|G-CCU- G-AGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UGGG--- CGA----AGC 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAC-GA-G A-CU-G-CCA --AC(-G--U AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAAC AGU-U-G-C- AA-AUC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G C-AU-GU-CU A-GGGU-AGG GCC-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)CG UGGGGG--UG GAUUACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.gallise2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gallisepticum str. S6. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallisepticum str. S6. ORGANISM Mycoplasma gallisepticum. REFERENCE 1 AUTHORS Skamrov,A., Goldman,M., Klasova,J. and Beabealashvilli,R. TITLE Mycoplasma gallisepticum 16S rRNA genes JOURNAL FEMS Microbiol. Lett. 128, 321-325 (1995) STANDARD No information REFERENCE 2 AUTHORS Scamrov,A. and Beabealashvilli,R. TITLE Mycoplasma Gallisepticum strain S6 genome contains three regions hybridizing with 16S rRNA and two regions hybridizing with 23S and 5S rRNA JOURNAL FEBS Lett. 291, 71-74 (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08897|g530152 (bases 619 to 2137) operon= rrnA operon isolate_name= S6; A5969 BASE COUNT 438 a 290 c 413 g 378 t 2857 others ORIGIN 1 .......... .......... .......... ...UUUUCUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -UAAC-GC-- UGGC-GGC-A -UGC-CU--A AUAC-AUGCA A-GUC-GAUC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CA--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGAG-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAUC- CAA--UCU-G C-CUUA---U -AGUG-G-GG 421 -GAU-AA-CU A--------- ------GU-- C(-GAAA-)G -AUUA-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-A GU-U--AACU ---AUC-(-- --------GC 541 AU-------- -)-GAG---A AU-AA----C UU--UAAA-- ---GAAGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----UAAG-- AUG---A-|G GGUGC----- -GG|----CA U--AUCA-G- CUA-G---UU 721 GG-UGAGG-( AU-AAU-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----CG-UG 781 U-AG-U-UA| -U-GCU--(G -AGA)-GGUA ----GA-A-- UAA-C|C-AC -AAUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU U-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCAA UGCC-GC-GU 961 G-A-AC-G-A U-GAA--G-G UC(U-UU-UU -A)GA-UUGU AAA--GUUC| UUUU-AU-UU 1021 --GG-GAA-- GA-ACAG-UU --AAU-AGA( G----UGGAA -----A---) GCUA-UU-AA 1081 ---------- -------U-U U-GA-CUGU- A-CCA-U-UU G-AA--UAAG ---------U 1141 -AACGACU-A ACUAU-GUG( CCA--GCAGU CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-ACAA- GCG-CAG-GC -G|-GA-UU- 1261 A-GA-AAG|U CUG---GUGU U-AAA-AG-C AA-UUG-C(- UU-A)A-CGA -UU-G-UA-- 1321 -UGCA-UUGG A-AAC-UUCU A-GUCUA-GA GUU-----UG G-UA-GAGAG UCC-U|GGAA 1381 CU-CCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAG- 1441 -A-G-GC(-G AA-G)GCGA- -GGACUUG-- ---------- ---------- ---------G 1501 GCC--AA-UA CUGACG-CUU AG-G------ -------CU- U-GAAA-GU- GU-GGG-GA- 1561 GC-AAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGG A--UG-UU-- -------A|A -GU-GU-CGG -AG------- ---------- 1681 -(CGA-AU)A ---------- ---------- ---------- ---------C -UUCGG-UGC 1741 UG--CA---- --GU-(UAA- ---C)A-CA- UUAA-ACAUC C|U|G-CCU- G-AGUAGUAC 1801 AUU-C---(G CAA)---G-A AU-GAAACUC -AAACGGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UGGUGG-AGC A-U-GU-UGC -UUAAUU-CG -(ACGGUA-C A)--CGAAAA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UGGG--- CGA----ACG 1981 -UAU-A--(- GAAA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCC-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAC-GA-G A-CU-G-CCA --AC(-G--U AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-GCA-AA-C GUG--CUACA AUGGC-C-AA -UA--CAAUC AGU-U-G-C- AA-AUC-C(G 2881 -UAA)GGUG- ---------- GA-GCUAA-U CUGU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGGC- (UGCAAU-U- C)-GCCCUCA -UGAAGU-CG -GAAU-CAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGCCAU)-G UCG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CUA-UGAG A--GC-UGG- UA-AU-AUCU -AAA-A-CCG 3121 U-GUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G C-AU-GU-CU A-GGGU-AGG GCC-GG-UG- AUU-GGAG-U 3301 U---AAGUC- GUAA-CAAGG UACCCC-UAC G(AGA-A)CG UGGGGG--UG GAUUACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5 M.HOMINIS_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5 M.HOMINIS_GROUP. ORGANISM 2.16.9.5 M.HOMINIS_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.1 M.MOBILE_ISOLATE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.1 M.MOBILE_ISOLATE. ORGANISM 2.16.9.5.1 M.MOBILE_ISOLATE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.mobile 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma mobile str. 163K ATCC 43663 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma mobile str. 163K ATCC 43663 (T). ORGANISM Mycoplasma mobile. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43663 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24480 isolate_name= 163K BASE COUNT 428 a 288 c 396 g 347 t 2917 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-AA (--CU----- ---------- ---------- 241 --------UG -)UU-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUAUC- UAA--CCU-A C-CUUU---U -GGAU-G-GG 421 -GAU-AA-CU G--------- ------UU-- G(-GAAA-)C -AACA-G--C UAAUACC-GA 481 AU-AAC---- ---------- -------U-A UU-U--U-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UU-UA----A UA-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUC--C- A--CCA---- 661 ----AAAA-- AUG---G-|G GAUGC----- -GG|----AA U--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UA-UU 781 U-AG-C-CG| -G-GCU--(G -AGA)-AGCC ----NA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUCUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-A-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUUC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAC-CC --UAG-AGA( G----GAAA- -----U---) GCUC-UA-GA 1081 ---------- -------U-U U-GA-CGGU- A-CCU-U-AU C-AG--AAAG ---------C 1141 -GACGGCN-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -G|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU U-AAA-UA-C UG-GUG-C(- UC-A)A-CAC -CA-G-CC-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AU G-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GUG(-G UGGAA)-UAC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACG-CUC AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-UUGA U--CA-UU-- -------A|G -UU-GG-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAC-CGA 1741 CA--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGNUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UU|--- ---------U ---UUUG--- CAA----AGG 1981 -UAU-G--(- GAGA-)-CAU -A-CUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UAA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGA-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AA -UA--CAAAG UGA-A-G-C- AA-AAU-G(G 2881 -UGA)CAUU- ---------- AA-GCAAA-C CACAA-AAAA -UU-A-GUC- UCAGUUCGGA 2941 U-CGAAGUC- (UGAAAC-U- C)-GACUUCG -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 AU-GAA-(UC -AGCUAC)-G UCA-UGGUG- AAUAC-GUU- CUC-GGG-UC UUGCA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UAG- UA-AU-GCCC -GAA-G-CCG 3121 G-AUA-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-U A-CU-GU-CU A-AGGC-AGG ACU-GG-UA- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.2 M.HYOPNEUMONIAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.2 M.HYOPNEUMONIAE_SUBGROUP. ORGANISM 2.16.9.5.2 M.HYOPNEUMONIAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.floccula 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma flocculare str. Ms42 ATCC 27399. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma flocculare str. Ms42 ATCC 27399. ORGANISM Mycoplasma flocculare. REFERENCE 1 AUTHORS Stemke,G.W., Laigret,F. and Bove,J.M. TITLE Mycoplasma hyopneumoniae, Mycoplasma flocculare and Mycoplasma hyorhinis; the complete 16S rRNA sequence of M .flocculare The phylogenetic relationships of three porcine Mycoplasmas, JOURNAL Int. J. Syst. Bacteriol. 42, 220-225 (1992) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27399 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X62699 ATCC 27399 = NCTC 10143 isolate_name= Ms42 BASE COUNT 467 a 293 c 411 g 376 t 2829 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~. CGCAAUCAUG AGAGUU(U-G A)U-CCU|-A 61 GCUCAG-GAU -GAAC-GC-- UAGC-UGU-G -UGC-UU--A AUAC-AUGCA U--UU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUAG UAUUUUA-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UAAAG UAUUGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--U AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAUACC-GG 481 AU-AUA---- ---------- -------A-U AA-A--A-A- ---UUC-(-- --------AC 541 AU-------- -)-GAA---- UU-UU----U AU-GAAAA-- ---GGAGCG- ---------- 601 --(------- --AAAAUA-- ---)------ ---------| -AGCUC--C- A--CCA---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GC|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GU-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GAAAAAA-AU --UAG-GUA( G----GGAA- -----U---) GAUC-UA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UCC- 1321 --GCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AGGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UU|--- ---------C ---UCGC--- -AA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGA-GA-UUA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CC-C- U-AGA-GA-U A-CU-G-CCG --GU(-G--U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-A-G-C- AA-AAC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCAA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC-AGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAACACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.floccul3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma flocculare str. Ms42. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma flocculare str. Ms42. ORGANISM Mycoplasma flocculare. REFERENCE 1 AUTHORS Stemke,G.W., Phan,R., Young,T.F. and Ross,R.F. TITLE Differentiation of Mycoplasma hyopneumoniae, M flocculare, and M hyorhinis on the basis of amplification of a 16S rRNA gene sequence JOURNAL Am. J. Vet. Res. 55, 81-84 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X63377|g450537 isolate_name= Ms42 NB: duplicate of M.floccul2? BASE COUNT 467 a 293 c 411 g 376 t 2829 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGCAAUCAUG AGAGUU(U-G A)U-CCU|-A 61 GCUCAG-GAU -GAAC-GC-- UAGC-UGU-G -UGC-UU--A AUAC-AUGCA U--UU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUAG UAUUUUA-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UAAAG UAUUGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--U AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAUACC-GG 481 AU-AUA---- ---------- -------A-U AA-A--A-A- ---UUC-(-- --------AC 541 AU-------- -)-GAA---- UU-UU----U AU-GAAAA-- ---GGAGCG- ---------- 601 --(------- --AAAAUA-- ---)------ ---------| -AGCUC--C- A--CCA---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GC|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GU-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GAAAAAA-AU --UAG-GUA( G----GGAA- -----U---) GAUC-UA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UCC- 1321 --GCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AGGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UU|--- ---------C ---UCGC--- -AA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGA-GA-UUA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CC-C- U-AGA-GA-U A-CU-G-CCG --GU(-G--U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-A-G-C- AA-AAC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCAA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC-AGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAACACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.floccul2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma flocculare str. Ms42. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma flocculare str. Ms42. ORGANISM Mycoplasma flocculare. REFERENCE 1 AUTHORS Stemke,G.W., Laigret,F. and Bove,J.M. TITLE The 16S and 23S rRNA operon of Mycoplasma flocculare and comparison with Mycoplasma hyopneumoniae JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L22210 isolate_name= Ms42 NB: duplicate of M.floccul3? BASE COUNT 466 a 291 c 412 g 372 t 2835 others ORIGIN 1 .......... .......... .......... CGCAAUCAUG AGAGUU(U-G A)U-CCU|-A 61 GCUCAG-GAU -GAAC-GC-- UAGC-UGU-G -UGC-UU--A AUAC-AUGCA U-GUU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AUAG UAUUUUA-GU (--UU----- ---------- ---------- 241 --------U- -)AC-UAAAG UAUUGU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--U AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAUACC-GG 481 AU-AUA---- ---------- -------A-U AA-A--A-A- ---UUC-(-- --------AC 541 AU-------- -)-GAA---- UU-UU----U AU-GAAAA-- ---GGAGCG- ---------- 601 --(------- --AAAAUA-- ---)------ ---------| -AGCUC--C- A--CCA---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GC|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GU-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GAAAAAA-AU --UAG-GUA( G----GGAA- -----U---) GAUC-UA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UCC- 1321 --GCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AGGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UU|--- ---------C ---UCGC--- -AA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGA-GA-UUA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CC-C- U-AGA-GA-U A-CU-G-CCG --GU(-G--U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-A-G-C- AA-AAC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCAA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC-AGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAACACCUC~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.floccul4 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma flocculare str. Ms42. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma flocculare str. Ms42. ORGANISM Mycoplasma flocculare. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04653|g440214 isolate_name= Ms42 BASE COUNT 174 a 90 c 151 g 132 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GU-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --UAG-GUA( G----GGAA- -----U---) GAUC-UA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AC U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UCC- 1321 --GCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.ovipneu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma ovipneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma ovipneumoniae. ORGANISM Mycoplasma ovipneumoniae. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44771|g1174213 BASE COUNT 452 a 285 c 386 g 352 t 2901 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UAUC-UGU-G -UGC-UU--A AUAC-AUGCA U-GUU-GAAC 121 G--GAA---- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -UAUGUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAUAU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--U AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-C-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGCG-G--C UAAUACC-AG 481 AU-ACG---- ---------- -------A-U AA-A--A-A- ---AAU-(-- --------GC 541 AU-------- -)-GUU---- UU-UU----U AU-UAAAA-- ---GAAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- A--CCA---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GC|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGCU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GA-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GG-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AC --UAG-AUA( G----GAAA- -----U---) GAUU-UA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------U 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UUC- 1321 --GCU-UUAG A-UAC-UGAC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUA AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CA--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UCGC--- -AA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGA-GA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CC-C- U-AGA-GA-U A-CU-G-CCG --GU(-G--C AA)-ACC-G- -GAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-A-G-C- GA-AAC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCAA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-AC-CU A-AGGC-AGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.ovipneu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma ovipneumoniae str. Y98. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma ovipneumoniae str. Y98. ORGANISM Mycoplasma ovipneumoniae. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04646|g440207 isolate_name= Y98 BASE COUNT 179 a 89 c 147 g 132 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 AGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GA-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-AG --)GG-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AC --UAG-AUA( G----GAAA- -----U---) GAUU-UA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------U 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-CAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UU-- 1321 -CGCU-UUAG A-UAC-UGAC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUA AU-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAG 1741 CA--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyopneu3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyopneumoniae str. J. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopneumoniae str. J. ORGANISM Mycoplasma hyopneumoniae. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04651|g440212 isolate_name= J BASE COUNT 179 a 93 c 145 g 130 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 AGG-AAUAUU C-CACAAU-- AA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-CG --)GG-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AC --UAG-AUA( G----GAAA- -----U---) GCUC-UA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AAGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UC-- 1321 -CGCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAA 1741 CA--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyopneum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyopneumoniae str. Weybridge ATCC 27719. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopneumoniae str. Weybridge ATCC 27719. ORGANISM Mycoplasma hyopneumoniae. REFERENCE 1 AUTHORS Taschke,C., Ruland,K. and Herrmann,R. TITLE Nucleotide sequence of the 16S rRNA of Myopneumoniae JOURNAL Nucleic Acids Res. 15, 3918-3918 (1987) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27719 Sequence information (bases 1 to 4376) Corresponding GenBank entry: Y00149 isolate_name= Weybridge BASE COUNT 465 a 302 c 400 g 370 t 2839 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CGCAAUCAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UAGC-UGU-G -UGC-UU--A AUAC-AUGCA U-GUU-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUAUUUU-AG (--UU----- ---------- ---------- 241 --------CG -)CU-AAAAU AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAUACC-AG 481 AU-AUG---- ---------- -------A-U AA-A--A-A- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- UU-UU----U AU-UCAAA-- ---GGAGC-- ---------- 601 --(------- --CUUCAA-- ---)------ ---------| --GCUU--C- A--CCA---- 661 ----AGAA-- AUG---G-|G GGUGC----- -GC|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAA-AG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (UUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUAUU C-CACAAU-- AA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U CU(--UU-CG --)GG-AUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AC --UAG-AUA( G----GAAA- -----U---) GCUC-UA-GU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AAGU U-AAA-UG-C UA-AAG-C(- UC-A)A-CUU -UA-G-UC-- 1321 -CGCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GUG(-G UGGAA)-UAC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-UA UUGACA-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -C-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -GUCAC-UAA 1741 CA--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-U-|--- ---------U ---CUCG--- CAA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GCC---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGA-GA-UCA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CC-C- U-AAA-GA-U A-CU-G-CCG --GC(-G--C AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGC-A-G-C- AA-AAC-A(G 2881 -UGA)UGUC- ---------- AA-GCUAA-U CUCAA-AAAA -GU-A-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC-AGG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAACACCUCC 3361 UUUC|UA~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyopneu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyopneumoniae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopneumoniae. ORGANISM Mycoplasma hyopneumoniae. REFERENCE 1 AUTHORS Taschke,C. and Herrmann,R. TITLE Analysis of transcription and processing signals of the 16S-23S rRNA operon of Mycoplasma hyopneumoniae JOURNAL Mol. Gen. Genet. 205, 434-441 (1986) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M30377 (bases 1 to 687) NB: Segment 3:M30378 (1..607) (about 2.8kb after segment 2) Segment 3: M30378 contains only 23S rRNA BASE COUNT 100 a 67 c 84 g 93 t 4032 others ORIGIN 1 .......... .......... .......... .GCAAUCAUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -AAAC-GC-- UAGC-UGU-G -UGC-UU--A AUAC-AUGCA U-GUU-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUAUUUU-AG (--UU----- ---------- ---------- 241 --------CG -)CU-AAAAU AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUA-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -GGAC-U-GG 421 -GAU-AA-CC A--------- ------UU-- G(-GAAA-)C -AGUG-G--C UAAUACC-AG 481 AU-AUG---- ---------- -------A-U AA-A--A-A- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- UU-UU----U AU-UCGAA-- ---GGAGC-- ---------- 601 --(------- --CUUCGAA- ---)------ ---------| --GCUU--C- G--CC..... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... ....U-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC--GG ACC-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAACACCUCC 3361 UUUC|U..~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.conjunct 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma conjunctivae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma conjunctivae. ORGANISM Mycoplasma conjunctivae. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44770|g1174212 BASE COUNT 450 a 286 c 388 g 353 t 2899 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UUGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUGUUUU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AAAAC AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUA-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---A -GGAU-U-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -AGUA-G--C UAAUACC-GA 481 AU-AUA---- ---------- -------A-U AU-U--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-AA----U AU-AGAAA-- ---GGAGC-- ---------- 601 --(------- --CUUUAAA- ---)------ ---------| --GCUU--C- A--CCU---- 661 ----AGAA-- AUG---G-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-AA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--A-U CC(--CU-CG --)GG-AUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-AAA-- GA-AAAA-AU --CAA-AUA( G----GAAA- -----U---) GAUU-UG-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UA-C UG-AAG-C(- UC-A)A-CUU -CA-G-CC-- 1321 -CGCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-CA UUGACA-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -U-------- ---------- 1681 -(-AU-UA)A ---------- ---------- ---------- ---------- -AUCAC-UAA 1741 CA--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-U-|--- ---------C ---CUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--UUU- 2281 AG--UUAC-U AA-CGU---- ---------- ---------- ---G(---AA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ACG|A 2701 G-GA-CU-C- U-AAA-GA-U A-CU-G-CCU --GU(-G--U AA)-GCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGA-C-G-C- AA-GAC-G(G 2881 -UGA)CGUU- ---------- AA-GCAAA-U CUCAA-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-C A-UU-GC-CU A-AGGC-AGG ACU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovoculi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovoculi.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovoculi. ORGANISM Mycoplasma bovoculi. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44768|g1174210 BASE COUNT 449 a 279 c 389 g 357 t 2902 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UCGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUU-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUAUUUU-AG (--CU----- ---------- ---------- 241 --------UG -)CU-AAAAU AU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUA-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--UCU-A C-CUUU---A -GGUU-C-GG 421 -GAU-AA-CU U--------- ------UU-- G(-GAAA-)C -AAGA-G--C UAAUACC-UG 481 AU-AUA---- ---------- -------G-U UU-A--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UA----A AU-AAAAA-- ---GGAGC-- ---------- 601 --(------- --UUCACG-- ---)------ ---------| --GCUU--C- G--CCU---- 661 ----AGAA-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GCC--(A -AGA)-GGUU ----GU-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 AGG-AAUUUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-U CU(--UU-AG --)GG-AUGU AAA--GUGC| UGUU-AU-AA 1021 --GG-AAA-- GA-AAAA-AU --UAA-AUA( G----GAAA- -----U---) GAUU-UA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -G|-UU-UU- 1261 G-UU-AAG|U UUA---AGGU U-AAA-UA-C UG-AAG-C(- UC-A)A-CUU -CA-G-CC-- 1321 -CGCU-UUAG A-UAC-UGGC A-AAAUA-GA AUU-----AU G-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GGA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UCA--UA-AA UUGACA-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -U-------- ---------- 1681 -(-AA-UA)- ---------- ---------- ---------- ---------- -AUCAC-UAG 1741 CA--CA---- --GC-(UAA- ---C)G-CG- AUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-A -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-U-|--- ---------C ---CUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-U |-UC--UUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGA-GA-C A-CU-G-CCA --GC(-G--U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-U-AC -UA--CAAAG AGA-A-G-C- AA-AAC-G(G 2881 -UGA)CGUC- ---------- CA-GCAAA-U CUCAA-AAAA -GU-A-GUC- CCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGG-(UC -AGCUAU)-A CUG-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUA-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-U G-CU-GC-CU A-AGGU-AGG ACU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyorhini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyorhinis str. PG42 ATCC 17981. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyorhinis str. PG42 ATCC 17981. ORGANISM Mycoplasma hyorhinis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 17981 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24658 ATCC 17981 = NCTC 10130 (T) isolate_name= PG42 BASE COUNT 414 a 262 c 368 g 342 t 2990 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~AUUUUUUG AGAGUU(U-G A)U-CCU|-A 61 GCUCAG-GAU -GAAN-GC-- UCGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUU-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UC--- AGUA-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---A -AGAC-U-GG 421 -GAU-AA-CU A--------- ------UU-- G(-GAAA-)C -AAUA-G--C UAAUACC-GG 481 AU-AUA---- ---------- -------G-U UA-U--U-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- GA-GU----A AU-AGAAA-- ---GGAGCU- ---------- 601 --(------- ---UCAC--- ---)------ ---------| -AGCUU--C- A--CUU---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GCC--(G -AGA)-GGCU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NNN-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 AGG-AAUUUU C-CACAAU-- GA-GC-(NAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-U UC(--UU-CG --)GA-AUGU AAA--CUGC| NGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGA-AUA( G----GAAA- -----U---) GAUU-UU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-UU-UU- 1261 G-CU-AAG|U CUG---GAGU U-AAA-UG-C UG-AAG-C(- UC-A)A-CUU -CA-G-UC-- 1321 -CGCU-UUGG A-UAC-UGGC A-AAAUA-GA AUU-----AU A-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UUA--UA-UA UUGACA-CUA AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -AA------- ---------- 1681 -(-UA-A-)- ---------- ---------- ---------- ---------U -UUCAC-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CG- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GC......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UUAC-U AA-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UGA-G-UU -AA-CU---- ---------- ---------- -----(---- -GNNN----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-C-C A-UU-GC-CU A-AGGC-AGG ACU-GA-GG- NG........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.neurolyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma neurolyticum str. Sabin type A ATCC 19988. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma neurolyticum str. Sabin type A ATCC 19988. ORGANISM Mycoplasma neurolyticum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19988 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23944 ATCC 19988 = IFO 14799 (T) isolate_name= Sabin type A BASE COUNT 448 a 278 c 392 g 354 t 2904 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAAUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUU-GAAC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GCAG-UA (--UU----- ---------- ---------- 241 --------UA -)UA-UUGC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUA-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---A -AGAU-U-GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -AGUU-G--C UAAUACC-AA 481 AU-AAC---- ---------- -------A-A AU-U--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- AA-AA----U UU-UAAAA-- ---GAAGCA- UAA-GAG--- 601 --(------- ---GUAA--- ---)------ ----CUC--| -CGCUU--C- A--CUU---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-GA-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GCC--(G -AGA)-GGCU ----GU-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NNA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUNC| NGUG-GU-AA 1021 --GG-AAA-- GA-AAAA-AU --AGG-GUA( G----GAAA- -----U---) GACC-CN-UA 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 NAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- UCG-UAG-GU -G|-GU-UU- 1261 G-UU-AAG|U CUG---AAGU U-AAA-UC-C AA-AAG-C(- UC-A)A-CUU -UU-G-CC-- 1321 -CGCU-UUAG A-UAC-UAGC A-AACUG-GA AUU-----GC A-AA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 -A-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UUG--UA-UA UUGACA-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UAG -A-------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- -UUUAC-CGA 1741 UG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 ACU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGAGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGNUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---CUUG--- CAA----AGU 1981 -UAU-A--(- GAGA-)-UAU -A-AUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-C- U-AGA-GA-G A-CU-G-CCA --AC(-G--A AA)-GUU-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG AGA-U-G-C- GA-CAU-A(G 2881 -UGA)UAUC- ---------- AA-GCAAA-U CUCAA-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAUU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- UA-AU-ACCC -GAA-G-AUG 3121 G-UUA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A A-CU-AU-CU A-AGGU-AGG ACU-GA-NG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.collis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma collis str. MO36. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma collis str. MO36. ORGANISM Mycoplasma collis. REFERENCE 1 AUTHORS van Kuppeveld,F.J.M., van der Logt,J.T.M., Angulo,A.F., van Zoest,M.J., Quint,W.G.V., Niesters,H.G.M., Galama,J.M.D. and Melchers,W.J.G. TITLE Genus and species specific identification of mycoplasmas by 16S rRNA amplification JOURNAL Unpublished (1992) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X64727 isolate_name= MO36 BASE COUNT 121 a 62 c 104 g 85 t 4004 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... ........GG 421 -GAU-AA-CU A--------- ------CU-- G(-GAAA-)C -AGUU-G--C UAAUACC-GA 481 AU-AAU---- ---------- -------A-A AU-U--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- AA-AA----U UU-UAAAA-- ---GAAGC-- ----UUG--- 601 --(------- ---AAUUA-- ---)------ ----UAG--| --GCUU--C- A--CUU---- 661 ----AAAA-- AUG---G-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GCC--(G -AGA)-GGCU ----GU-C-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCA -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-AAA-- GA-AAAA-AU --AGA-GUA( G----GAAA- -----U---) GACU-CU-UA 1081 ---------- -------A-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GA....... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sualvi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sualvi str. Mayfield B ATCC 33004. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sualvi str. Mayfield B ATCC 33004. ORGANISM Mycoplasma sualvi. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33004 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23936 ATCC 33004 = NCTC 10170 (T) isolate_name= Mayfield B BASE COUNT 407 a 271 c 378 g 340 t 2980 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UUGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUU-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 -------UAU -)GG-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCA-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--CCU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AA-CU G--------- ------UU-- G(-GAAA-)C -AAUA-G--C UAAUACC-GA 481 AU-ACG---- ---------- -------U-A UU-G--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-UU----U UA-UAAAA-- ---GGGGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCCU--C- A--CUA---- 661 ----AAAG-- AUG---G-|G GGUGC----- -GG|----CA U--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UGA------- -----UA-UG 781 U-AG-C-CG| -G-ACU--(G -AGA)-AGUU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NNN-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUGC| NGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --UUA-AUA( G----GAAA- -----U---) GAUU-AA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------U 1141 -GACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCA-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- UUG-UAG-GC -G|-GU-UU- 1261 A-UC-AAG|U CUA---GAGU U-AAA-GC-C UG-AGG-C(- UC-A)A-CCU -CA-G-UC-- 1321 -CGCU-CUGG A-UAC-UGGU U-AACUA-GA GUU-----AU A-UA-GAGGU AAA-C|GGAA 1381 UU-CUUAGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAA- 1441 -C-G-GC(-G AA-G)GCAG- -UUUACUG-- ---------- ---------- ---------G 1501 AUA--UA-CA CUGACG-CUC AA-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GC-UAG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUUAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAA.... .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-U 2221 UG-G-(UUAA -GU)-CCAGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--UUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGA-GA-A A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-AGG-A CG-ACG--UC -A-AACC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UGA- UA-AU-ACCC -AAA-G-ACG 3121 G-CUA-G-UU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-G G-UU-GU-CU A-AGGU-AGG AUC-GA-UG- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sualvi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sualvi str. Mayfield B. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sualvi str. Mayfield B. ORGANISM Mycoplasma sualvi. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04644|g440205 isolate_name= Mayfield B BASE COUNT 172 a 96 c 149 g 128 t 3831 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CGCAAU-- GA-GC-(GAA A)-GCU-UGA CGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUGC| UGUU-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --UUA-AUA( G----GAAA- -----U---) GAUU-AA-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------U 1141 -GACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCA-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GAGU- UUG-UAG-GC -G|-GU-UU- 1261 A-UC-AAG|U CUA---GAGU U-AAA-GC-C UG-AGG-C(- UC-A)A-CCU -CA-G-UC-- 1321 -CGCU-CUGG A-UAC-UGGU U-AACUA-GA GUU-----AU A-UA-GAGGU AAA-C|GGAA 1381 UU-CUUAGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAA- 1441 -C-G-GC(-G AA-G)GCAG- -UUUACUG-- ---------- ---------- ---------G 1501 AUA--UA-CA CUGACG-CUC AA-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GC-UAG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUUAG-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.3 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.3 M.HOMINIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.3 M.HOMINIS_SUBGROUP. ORGANISM 2.16.9.5.3 M.HOMINIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.arginini 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma arginini str. G230 ATCC 23838. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma arginini str. G230 ATCC 23838. ORGANISM Mycoplasma arginini. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23838 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24579 ATCC 23838 = NCTC 10129 (T) isolate_name= G230 BASE COUNT 383 a 295 c 401 g 325 t 2972 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NAAAUUUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------UU -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AU-GUGCU- UAA--UCU-A C-CCUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-CU----U UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- -CCUUAAA-- ---)------ ---------| --GCUC--C- N--CUA---- 661 ----GAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAA-- GA-ACAC-CU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AG 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GNNAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-G-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAAC.. .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----UGC 1981 -UAU-A--(- GAGA-)-UAU -A-GCN---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- -NUNC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.arginin2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma arginini. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma arginini. ORGANISM Mycoplasma arginini. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15794|g559573 nat_host= Panthera leo BASE COUNT 398 a 300 c 419 g 328 t 2931 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........UG -AAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------UU -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CCUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-CG----U UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- -CUUUAAA-- ---)------ ---------| --GCUC--C- G--CUA---- 661 ----GAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAAA- GA-ACAC-CU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AG 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-G-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----UGC 1981 -UAU-A--(- GAGA-)-UAU -A-GCA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- ---UC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.gateae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gateae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gateae. ORGANISM Mycoplasma gateae. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15796|g559575 nat_host= Felis catus BASE COUNT 395 a 302 c 420 g 326 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ........CU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------UU -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CCUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-CG----U UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- --CUCAAA-- ---)------ ---------| --GCUC--C- G--CUA---- 661 ----GAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAA-- GA-ACAC-UU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU U-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-G-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----UGC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- ---UC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.canaden3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma canadense.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma canadense. ORGANISM Mycoplasma canadense. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44769|g1174211 BASE COUNT 412 a 304 c 418 g 332 t 2910 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------UU -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--UCU-A C-CCUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--A-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-CA----A UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- --CCUUAAA- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----AAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAA-- GA-ACAC-UU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UA-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----UGC 1981 -UAU-A--(- GAGA-)-UAU -A-GCG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- ---UC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.canaden2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma canadense str. 275C. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma canadense str. 275C. ORGANISM Mycoplasma canadense. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04655|g440216 isolate_name= 275C BASE COUNT 162 a 102 c 158 g 122 t 3832 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAA-- GA-ACAC-UU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UA-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-NA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.alkalesc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma alkalescens.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma alkalescens. ORGANISM Mycoplasma alkalescens. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44764|g1174207 BASE COUNT 409 a 298 c 418 g 338 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UU (--U------ ---------- ---------- 241 --------UU -)AA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CCUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-A--A-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-UG----U UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- -CUUUAAA-- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----GAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-AAA-- GA-AAAC-UU --GGU-UGA( G----GAAA- -----U---) GCUU-CC-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UUG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU U-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-UU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----GG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG -A-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -UUCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUC---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAR -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -GAA-G-UCG 3121 G-UUA-G-CU -AA-CC---- ---------- ---------- -----(---- ---UC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.arthriti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma arthritidis str. PG6 ATCC 19611 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma arthritidis str. PG6 ATCC 19611 (T). ORGANISM Mycoplasma arthritidis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19611 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24580 isolate_name= PG6 BASE COUNT 404 a 297 c 422 g 337 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAUUUUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CCUU---U -AGAC-U-GG 421 -AAU-AA-CU A--------- ------AU-- G(-GAAA-)C -AUUG-G--C UAAUGCC-GG 481 AU-GCG---- ---------- -------C-A -U-G--G-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UC-CG----U UG-UGAAA-- ---GGAGC-- ---------- 601 --(------- --CUCAAA-- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----GAGG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AG 1021 --GG-GAA-- GA-ACAC-UU --AGU-UGA( G----GAAA- -----U---) GCUU-CU-AA 1081 ---------- -------G-C U-GA-CGGU- A-CCC-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU U-AAA-UC-C NA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(AUU-AA)- ---------- ---------- ---------- ---------- --UCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AANNUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-CC---- ---------- ---------- -----(---- -URA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CU-GC-CU A-AGGU-AGG ACU-GG-UG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.salivari 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma salivarium str. PG20 ATCC 23064. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma salivarium str. PG20 ATCC 23064. ORGANISM Mycoplasma salivarium. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23064 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24661 ATCC 23064 = NCTC 10113 (T) isolate_name= PG20 BASE COUNT 388 a 286 c 400 g 327 t 2975 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAAUUUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CUCU---U -AGAU-U-GG 421 -AAU-AC-CU A--------- ------AU-- G(-GAAA-)C -AUUN-G--U UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UC-CN----U UG-UGAAA-- ---GGGGC-- ---------- 601 --(------- -CUUUAAA-- ---)------ ---------| --GCUC--C- A--CUA---- 661 ----AGAG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(U-UA-U- -G)GA-UUGU AAA--GUGC| UGUU-GC-UA 1021 --GG-GAA-- GA-AAAA-GU --AGU-UGA( G----GAAA- -----U---) GCUU-CU-AC 1081 ---------- -------A-U U-GA-CGGU- A-CCU-N-GU U-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 NAG-CGUUAU CC-GNNAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----GG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUU--UA-UA CUGACG-CUG AG-G------ -------AA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-CAG ---------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- --CUGU-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GN-NAAAC.. .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UNG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGN-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAU-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-CCG--- ---------- ---------- -----(---- -UCCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- NGNAGG-C-G A-CU-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-NGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.orale 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma orale str. CH19299 ATCC 23714. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma orale str. CH19299 ATCC 23714. ORGANISM Mycoplasma orale. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J.L ., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23714 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24659 ATCC 23714 = NCTC 10112 (T) isolate_name= CH19299 BASE COUNT 398 a 292 c 418 g 336 t 2932 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAAUUUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CUUU---U -AGAU-U-GG 421 -AAU-AC-CU A--------- ------AU-- G(-GAAA-)C -AUUG-G--U UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--A-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UU-CG----U UG-UGAAA-- ---GGAGCG- ---------- 601 --(------- ---UUU---- ---)------ ---------| -CGNUC--C- G--CUA---- 661 ----AGAG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-UC-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GUGC| NGUU-GC-AA 1021 --GG-GAA-- GA-ACAG-UU --AGU-UGA( G----GAAA- -----U---) GCUU-CU-AA 1081 ---------- -------U-C U-GA-CGGU- A-CCU-U-GU U-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GGA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(-AA-AA)- ---------- ---------- ---------- ---------- --CUAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-NNGGG-G -A-N-NC--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-GGU -UUAAU.... .(....UA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---CCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-GG-NGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAU-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGNUAC)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGANG-C-G A-CU-GC-CU A-AGGU-AGG ACU-GG-UG- AC........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyosyno2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyosynoviae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyosynoviae. ORGANISM Mycoplasma hyosynoviae. REFERENCE 1 AUTHORS Blank,W.A. and Stemke,G.W. JOURNAL Unpublished (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U26730|g841496 BASE COUNT 416 a 309 c 433 g 341 t 2877 others ORIGIN 1 .......... .......... .......... ....CCGCCC AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CUUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------AU-- G(-GAAA-)C -AUUG-G--U UAAUGCC-GG 481 AU-AAG---- ---------- -------U-A -U-G--A-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-CG----U UA-UGAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----AGAG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GUGC| UGUU-GC-AA 1021 --GG-GAA-- GA-GAAA-GC --AGU-UGA( G----GAAA- -----U---) GCAA-CU-GA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GU U-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----GG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(-CC-AA)- ---------- ---------- ---------- ---------- --UCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AGGAUA-C G)--CGGAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CGA---- ---------- ---------- ---G(---UC ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UCG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUUC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A A-CU-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC C(GGG-C)UA GAG....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyosynov 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyosynoviae str. S16. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyosynoviae str. S16. ORGANISM Mycoplasma hyosynoviae. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04650|g440211 isolate_name= S16 BASE COUNT 163 a 105 c 159 g 117 t 3832 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--GUGC| UGUU-GC-AA 1021 --GG-GAA-- GA-AAAA-GC --AGU-UGA( G----GAAA- -----U---) GCAA-CU-GA 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GU U-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 A-UU-AAG|U CUG---GAGU C-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-CU-- 1321 -CGCU-UUGG A-UAC-UGGU A-AACUA-GA GUU-----GG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(-CC-AA)- ---------- ---------- ---------- ---------- --UCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-AAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hominis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hominis str. PG21 ATCC 23114. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hominis str. PG21 ATCC 23114. ORGANISM Mycoplasma hominis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten,J .L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 23114 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24473 ATCC 23114 = NCTC 10111 (T) isolate_name= PG21 BASE COUNT 395 a 287 c 396 g 320 t 2978 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUUAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-A---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -UN-GUGCU- UAA--UCU-A C-CUUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------UU-- G(-GAAA-)C -AAUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-CG----U UG-UGAAA-- ---NGCGCU- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GGCGC--N- A--CUA---- 661 ----AAAG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| NGUU-AU-AA 1021 --GG-GAA-- GA-ACAU-UU --GCA-AUA( G----GAAA- -----U---) GAUU-GC-AG 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC NNCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GNAAUUA -UU-GGGC|G UAAA-GCGU- UCN-UAG-GC -N|-NN-UU- 1261 G-UU-AAG|U CUG---GAGU U-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-CU-- 1321 -CGCU-UUGG A-UAC-UAGC A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- --UCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCN-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAA. .......... .......... 1861 .......... .......... .......... .......... .(....UA-C A)--CGGAAA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--NUU- 2281 AN--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-CC---- ---------- ---------- -----(---- -NNNC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hominis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hominis str. 183. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hominis str. 183. ORGANISM Mycoplasma hominis. REFERENCE 1 AUTHORS Blanchard,A., Yanez,A., Dybvig,K., Watson,H.L., Griggiths,G. and Casse,G.H. TITLE Evaluation of intraspecies genetic variation within the 16S rRNA gene of Mycoplasma hominis and JOURNAL J. Clin. Microbiol. 31, 1358-1361 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M96660 isolate_name= 183 NB: method:PCR BASE COUNT 406 a 297 c 414 g 330 t 2929 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- UAA--UCU-A C-CUUU---U -AGAU-U-GG 421 -AAU-AC-CC A--------- ------UU-- G(-GAAA-)C -AAUG-G--C UAAUGCC-GG 481 AU-ACG---- ---------- -------C-A -U-G--G-A- ---ACC-(-- --------GC 541 AU-------- -)-GGU---- UC-CG----U UG-UGAAA-- ---GGCGCU- ---------- 601 --(------- ---GUAA--- ---)------ ---------| -GGCGC--C- A--CUA---- 661 ----AAAG-- AUG---A-|G GGUGC----- -GG|----AA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-CCACC-A A|-GAC-UA- UGA------- -----UG-UU 781 U-AG-C-CG| -G-GUC--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AAA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-ACAU-UU --GCA-AUA( G----GAAA- -----U---) GAUU-GC-AG 1081 ---------- -------A-C U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -GAUGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -U|-GU-UU- 1261 G-UU-AAG|U CUG---GAGU U-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG---CU-- 1321 -CGCU-UUGG A-UAC-UAGC A-AACUA-GA GUU-----AG A-UA-GAGGU AAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GUC--UA-UA CUGACG-CUG ---G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UC-GG-UGG ---------- ---------- 1681 -(-AG-AA)- ---------- ---------- ---------- ---------- --UCAC-UGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-N -N-A-CN--G 1861 C-A--CA-AG ---NGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C A)--CGGAAA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAU------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UCAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGA-GA-U A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -CGA)CACU- ---------- GA-GCAAA-U CUCAA-AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAU-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGCUAU)-G CUG-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUU-G-CU -AA-C----- ---------- ---------- -----(---- -CUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.4 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.4 M.AGASSIZII_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.4 M.AGASSIZII_SUBGROUP. ORGANISM 2.16.9.5.4 M.AGASSIZII_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.agassizi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma agassizii str. PS6. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma agassizii str. PS6. ORGANISM Mycoplasma agassizii. REFERENCE 1 AUTHORS Brown,D.R., Crenshaw,B.C., McLaughlin,G.S., Schumacher,I.M., McKenna,C.E., Klein,P.A., Jacobson,E.R. and Brown,M.B. TITLE Taxonomic analysis of the tortoise mycoplasmas Mycoplasma agassizi and Mycoplasma testudinis by 16S rRNA gene sequence comparison JOURNAL Int. J. Syst. Bacteriol. 45, 348-350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09786|g497250 (bases 1361 to 1438) nat_host= Gopherus agassizii isolate_name= PS6 BASE COUNT 418 a 291 c 401 g 332 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----ACU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AGU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GC-A- 361 -A-UG-GG-U GAGU---AAC -AC-GUACC- UAA--UCU-A C-CUUA---A -AGAU-C-GG 421 -AAC-AA-CA A--------- ------UG-- G(-GAAA-)C -CGUU-G--C UAAUACC-GG 481 AU-AUA---- ---------- -------C-C UU-U--G-A- ---AAA-(-- --------GC 541 AU-------- -)-UUU---- UU-AA----A GG-CGAAA-- ---GGAGC-- ---------- 601 --(------- ---AACU--- ---)------ ---------| --GCUU--C- A--CUU---- 661 ----UGAG-- AUG---A-|G GGUGC----- -GU|----UA C--AUUA-G- UUA-G---UU 721 GG-CA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UA 781 U-AG-C-CG| -A-GUU--(G -AGA)-GACU ----GA-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-GC-(GCA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CUGC| UGUU-AU-AC 1021 --AG-AAA-- GA-AAAG-AU --AUA-GGA( G---UGGAA- -----A---) GCCU-AU-AU 1081 ---------- -------U-A U-GA-CGGU- A-CUG-U-AU C-AG--AAAG ---------U 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCA-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GAGU A-AAA-GA-C CG-GUG-C(- UC-A)A-CGC -CG-G-CA-- 1321 -CGCU-UUAG A-UAC-UGGC A-AACUA-GA GUU-----AU A-AA-GAGGU AAG-U|GGAA 1381 UU-UCAUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGAAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 UUA--UA-UA CUGACA-CUG AG-G------ -------GG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -GG------- ---------- 1681 -(-GA-AC)- ---------- ---------- ---------- ---------C -CUCGC-UAA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(ACGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---CUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAA-GG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AU--UUACCU AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-AA-CU-A- U-ACG-GA-U A-CU-G-CUC --AG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-C-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUG-A-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGAAGGC- (UGCAAU-U- C)-GCCUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UUUAG-CU -AA-CU---- ---------- ---------- -----(---- --UC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G A-CU-GC-CU A-AGGC-AGG AUU-GG-UG- ACU-GGGU-G 3301 A......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spH3110 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. H3110. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. H3110. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Brown,D.R., Crenshaw,B.C., McLaughlin,G.S., Schumacher,I.M., McKenna,C.E., Klein,P.A., Jacobson,E.R. and Brown,M.B. TITLE Taxonomic analysis of the tortoise mycoplasmas Mycoplasma agassizi and Mycoplasma testudinis by 16S rRNA gene sequence comparison JOURNAL Int. J. Syst. Bacteriol. 45, 348-350 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U19768|g665571 nat_host= Gopherus agassizii isolate_name= H3110 BASE COUNT 417 a 296 c 404 g 327 t 2932 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GUGC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----AG-UA (--CU----- ---------- ---------- 241 --------UG -)UA-CU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CCU-A C-CUCA---C -AGAC-U-GG 421 -AAU-AA-CC A--------- ------AG-- G(-GAAA-)C -UUUG-G--C UAAUGCC-GG 481 AU-ACA---- ---------- -------C-C UU-A--A-C- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UA----A GG-UUAAA-- ---GGAAC-- ---------- 601 --(------- ---UAUU--- ---)------ ---------| --GUUU--C- A--CUG---- 661 ----GGAG-- AUG---G-|G GGUGC----- -GU|----UA C--AUUA-G- UUA-G---UU 721 GG-CG-GU-( GU-AAU-AG) -A-CCACC-A A|-GAC-GA- UGA------- -----UG-UA 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACC ----GA-A-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UUC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--CUGC| UGUU-AU-AC 1021 --AG-AAA-- GA-AAAG-AU --AAG-GGA( G---UGGAA- -----A---) GCCC-UU-AU 1081 ---------- -------U-A U-GA-CGGU- A-CUG-U-AU C-AG--AAAG ---------U 1141 -GACGGCA-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCA-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CCG-UAG-GU -U|-GU-CU- 1261 G-UU-AAG|U CUG---AAGU C-AAA-AA-C CG-AAG-C(- CC-A)A-CUU -CG-G-CU-- 1321 -CGCU-UCAG A-UAC-UGGC A-AACUA-GA GUU-----AU A-GA-GAGGU UAG-U|GGAA 1381 UU-UCAUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-UGAAAG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 CUA--UA-UA CUGACA-CUG AGGGACGAAA GCGUGGGGG- C-GCAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GG-UGG -A-------- ---------- 1681 -(-GC-AA)- ---------- ---------- ---------- ---------- -UUCAC-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-UCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(ACGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCGG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CCG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAN -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-U- U-AAG-GA-U A-CU-G-CCU --AG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-C-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUG-A-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGAAGGC- (UGCAAU-U- C)-GCCUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-ACCC -AAA-G-UCG 3121 G-UUUAG-CU -AA-CU---- ---------- ---------- -----(---- --AC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-C-G A-CU-GC-CU A-AGGU-AGN GAU-GG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pulmonis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pulmonis str. PG34 ATCC 19612 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pulmonis str. PG34 ATCC 19612 (T). ORGANISM Mycoplasma pulmonis. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19612 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M23941 isolate_name= PG34 BASE COUNT 405 a 271 c 385 g 349 t 2966 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GANN-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GUAUU-AA (--UU----- ---------- ---------- 241 --------UA -)UU-AGUGC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUAUU- UAA--CCU-A C-CUCA---A -AGAC-U-GG 421 -GAU-AA-CA A--------- ------CA-- G(-GAAA-)C -UGUU-G--C UAAUACC-GG 481 AU-AUG---- ---------- -------U-A UU-U--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-AG----A UA-UCAAA-- ---GGAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- A--CUU---- 661 ----UGAA-- AUG---G-|G AGUGC----- -GU|----UA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-UA 781 U-AG-C-UG| -A-GUU--(G -AGA)-GACU ----GA-A-- CAG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GUGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAG-CU --UAG-GGA( G----GAAA- -----U---) GCCC-UA-AG 1081 ---------- -------U-A U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -ACCGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GGUG-C-- 1201 NAG-CGUUAU CC-GAAAUUA -UU-GGGU|G UAAA-GAGU- UCG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CAG---AAGU U-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -UG-G-CC-- 1321 -CGCU-UUUG A-UAC-UAGC A-AACUA-GA GUU-----AU A-AA-GAGGU UAG-U|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGU -GU-AGAU-A UU-AGGAAG- AACA-UCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 UUA--UG-UA CUGACA-CUG AG-G------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GG-UGG -A-------- ---------- 1681 -(-AU-UU)- ---------- ---------- ---------- ---------- -UUCAC-UAG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|A-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAAC.. .......... .......... .......... 1861 .......... .......... .......... .......... .(....UA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------C ---UUCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AG-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--UUU- 2281 AA--UUAC-U A--CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-U- U-AAA-GA-U A-CU-G-ACC --AA(-G--C AA)-UUG-G- -UAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-A-G-C- AA-GAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -AAA-G-UCG 3121 G-UUUAG-CU -AA-CC---- ---------- ---------- -----(---- -NUC------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-G A-CU-GU-CU A-AGGC-AGG ACU-GG-UG- ACN-AGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.5 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.5 M.BOVIRHINIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.5 M.BOVIRHINIS_SUBGROUP. ORGANISM 2.16.9.5.5 M.BOVIRHINIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovirhi2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovirhinis str. PG43. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovirhinis str. PG43. ORGANISM Mycoplasma bovirhinis. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04656|g440217 isolate_name= PG43 BASE COUNT 163 a 99 c 160 g 125 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GNA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GC --AUU-AGA( G----GAAA- -----U---) GCAA-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-AU- 1261 G-UU-AAG|U CUG---GCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCG-UUGG A-UAC-UGGC A-UGCUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 UU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UAG -A-------- ---------- 1681 -(-GA-GG)- ---------- ---------- ---------- ---------- -UCUAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovirhi3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovirhinis.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovirhinis. ORGANISM Mycoplasma bovirhinis. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44766|g1174208 BASE COUNT 421 a 283 c 402 g 345 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--AU----- ---------- ---------- 241 --------UA -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CAU-A C-CUCU---U -AGAU-U-GG 421 -GAU-AA-CG G--------- ------UG-- A(-GAAA-)U -UAUC-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-A UA-U--A-A- ---GUC-(-- --------GC 541 AU-------- -)-GAC---- UU-AU----A UA-UAAAA-- ---GAAGCC- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -AGCUU--C- A--CUA---- 661 ----AGAG-- AUU---G-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GC --AUU-AGA( G----GAAA- -----U---) GCUA-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU Y-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-AU- 1261 G-UU-AAG|U CUG---GCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCG-UUGG A-UAC-UGGC A-UGCUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAU 1441 UU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UAG -A-------- ---------- 1681 -(-GA-GG)- ---------- ---------- ---------- ---------- -UCUAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GCA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ---A(---UU ---UUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ---------- U-AGG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-U-AG -UA--CAAAG AGA-A-G-C- AA-CAU-G(G 2881 -UGA)CAUC- ---------- AA-GCAAA-U CUCAA-AAAA -CU-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-CU-GC-CU A-AGGC-AGG GCC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.canis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma canis str. PG14. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma canis str. PG14. ORGANISM Mycoplasma canis. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04654|g440215 isolate_name= PG14 BASE COUNT 166 a 98 c 157 g 125 t 3830 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA R)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GC --AGU-AGA( G----GAAA- -----U---) GCUA-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-AU- 1261 G-UU-AAG|U CUG---GCGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCG-UUGG A-UAC-UGGC A-UGCUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-UCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UAG -U-------- ---------- 1681 -(-AG-A-)- ---------- ---------- ---------- ---------- -ACUAU-CGG 1741 CA--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.spM209 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sp. str. M209/78. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sp. str. M209/78. ORGANISM Mycoplasma sp. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04643|g440204 isolate_name= M209/78 BASE COUNT 167 a 100 c 157 g 121 t 3831 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GC --AGA-AGA( G----GAAA- -----U---) GCUU-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-GU- 1261 G-UU-AAG|U CUG---ACGU A-AAA-AC-U UG-GAG-C(- UC-A)A-CUC -CA-A-AU-- 1321 -AGCG-UUGG A-UAC-UGGC A-CGCUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-UCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UGG ---------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- --CCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCA-C---(G CAA)---G-U GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.leocaptv 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma leocaptivus. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma leocaptivus. ORGANISM Mycoplasma leocaptivus. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16759|g567068 nat_host= Panthera leo BASE COUNT 406 a 279 c 395 g 342 t 2954 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CU (--UU----- ---------- ---------- 241 --------U- -)AG-AAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-UCUU---U -AGAU-U-GG 421 -GAC-AA-CG A--------- ------UG-- A(-GAAA-)U -UAUC-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-A UA-U--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- AG-AU----A UA-UAAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUC--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----AAGA-- AUC---G-|G GGUGC----- -GG|----AG C--AUUA-G- UUU-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-NC --AUU-AUA( G----GAAA- -----U---) GAUA-GU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-GU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCG-UUGG A-UAC-UGGC A-UACUA-GA AUA-----GU G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 GCA--CU-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UAG ---------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- --CUAU-CGG 1741 CA--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUU---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-C-(UUAA -GU)-GCCAU AA-------- CGAG-C--GC AACCC-UU-U |-UC--UUU- 2281 AG--UU---- ---------- ---------- ---------- ----(---AA ---UUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-U- U-AGA-GA-U N-CU-G-CCC --AA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-CG-GGG-N CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-A-G-C- AA-UAU-A(G 2881 -UGA)UAUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-CU-GC-CU A-AGGC-AGG GCC-GG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.felis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma felis. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma felis. ORGANISM Mycoplasma felis. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U09787|g497251 (bases 1350 to 1427) biol_source= eye of Felis domesticus (cat) with conjunctivitis BASE COUNT 412 a 281 c 397 g 339 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CU (--UU----- ---------- ---------- 241 --------U- -)AG-GAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-CUUU---U -AGUU-U-GG 421 -AAU-AA-CG G--------- ------UG-- A(-GAAA-)U -UAUC-G--C UAAUGCC-GG 481 AU-ACU---- ---------- -------U-U UU-U--A-U- ---UUC-(-- --------AC 541 AU-------- -)-GAG---- AU-UU----A AA-UAAAA-- ---GGAACU- ---------- 601 --(------- ---UCAA--- ---)------ ---------| -AGUUU--C- A--CUA---- 661 ----AAAG-- AUC---G-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAA-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GN-NNAA-AU --AUU-AUA( A----GAAA- -----A---) GAUA-AU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-GU- 1261 G-UU-AAG|U CUG---GCGU C-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -CGCG-UUGG A-UAC-UGGC A-CACUA-GA AUU-----GU A-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GUA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UAG -A-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -UCUAU-CGG 1741 CA--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |GUCC-CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AA ---UAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG AGA-A-G-C- AA-UAC-G(G 2881 -CGA)CGUN- ---------- GA-GCAAA-U CUCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-CU-GC-CU A-AGGC-AGG GCC-GG-UG- ACUGGGGG-U 3301 G---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.corogyps 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma corogypsi str. BV1 ATCC 51148 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma corogypsi str. BV1 ATCC 51148 (T). ORGANISM Mycoplasma corogypsi. REFERENCE 1 AUTHORS Panangala,V.S., Stringfellow,J.S., Dybvig,K., Woodard,A., Sun,F., Rose,D.L. and Gresham,M.M. TITLE Mycoplasma corogypsi sp. nov., a new species from the footpad abscess of a black vulture, Coragyps atratus JOURNAL Int. J. Syst. Bacteriol. 43, 585-590 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 51148 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L08054 Former RDP Sids: M.coragyps isolate_name= BV1 NB: former name Mycoplasma coragypsum BASE COUNT 409 a 292 c 419 g 345 t 2911 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UC (--UU----- ---------- ---------- 241 --------CG -)GA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CAU-G C-CUUU---C -AGAU-U-GG 421 -GAU-AA-CG C--------- ------UG-- A(-GAAA-)U -UAGC-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-A UA-U--U-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AG-AU----A UA-UAAAA-- ---GGGGGG- ---------- 601 --(------- ----GUU--- ---)------ ---------| -UCCCU--C- A--CUG---- 661 ----GAAG-- AUU---G-|G GGUGC----- -GU|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AU -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A G-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GU --AGG-UUA( G----GAAA- -----U---) GAAC-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-GU- 1261 G-UU-AAG|U CUG---GCGU C-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -CGCG-UUGG A-UAC-UGGC A-UACUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUAGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAAC 1441 UU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-AA-UGG ---------- ---------- 1681 -(-AA-U-)- ---------- ---------- ---------- ---------- --CCAU-UGG 1741 CG--CA---- --SS-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG GCA-UC|--- ---------U ---UCCG--- CAA----AAC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UCAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-U |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---GA ---UGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGG-GA-U A-CU-G-CCG --GA(-G--U AA)-UCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-C-G-C- AA-UAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-GU.. .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.sturnida 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma sturnidae str. UCMF. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma sturnidae str. UCMF. ORGANISM Mycoplasma sturnidae. REFERENCE 1 AUTHORS Forsyth,M.H., Tully,J.G., Gorton,T.S., Frasca,S., Hickley,L., Van Kruiningen,H.J. and Geary,S.J. TITLE Mycoplasma sturni sp. nov., from the conjunctiva of a European starling (Sturnus vulgaris) JOURNAL Int. J. Syst. Bacteriol. 46, 716-719 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U22013 nat_host= Sturnus vulgaris isolate_name= UCMF; p170/171 BASE COUNT 406 a 282 c 403 g 335 t 2950 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-G C-CCCU---U -AGAU-U-GG 421 -AAU-AA-CG C--------- ------UG-- A(-GAAA-)U -UAGC-G--C UAAUGCC-GG 481 AU-ACU---- ---------- -------U-A UU-A--A-G- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- CU-UA----A UA-UAAAA-- ---GGAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----AGGG-- AUC---G-|G GGUGC----- -GG|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -A-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-U-GC-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCAC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GC --AGU-AGA( G----GAAA- -----U---) GCUA-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---ACGU C-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -CGCG-UUGG A-UAC-UGGC A-AGCUA-GA GUU-----GU U-UA-GAGGU UAA-U|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AUUU-CC(-G AA-A)GGGA- -UGAACUG-- ---------- ---------- ---------G 1501 GAA--CA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -UU-GA-UGG ---------- ---------- 1681 -(-UG-A-)- ---------- ---------- ---------- ---------- --CCAU-CGA 1741 CG--CGA--- --GC-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GGGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AA ---UGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGG-GA-G A-CU-G-CCU --GG(-G--U AA)-CUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GG-C- 2821 A-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG AGA-A-G-C- AA-UAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -A--UAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CGGG A--GC-UGG- UA-AU-ACCC -GAA-G-UCG 3121 G-UUUAG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAAA-C-G A-CC-GC-CU A-AGGU-AGG ACU-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.galnacem 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gallinaceum str. DD. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallinaceum str. DD. ORGANISM Mycoplasma gallinaceum. REFERENCE 1 AUTHORS Boyle,J.S. and Morrow,C.J. TITLE Avian Mycoplasma phylogeny JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24104 isolate_name= DD BASE COUNT 400 a 288 c 410 g 330 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AURCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCKA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-G C-CCCC---U -URAU-U-GG 421 -GAU-AA-CG C--------- ------UG-- A(-GAAA-)U -UAGC-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-A AA-U--A-U- ---CUC-(-- --------GC 541 AU-------- -)-GAG---- GU-AU----U UA-UAAAA-- ---GGAGCCU ---------- 601 --(------- ---UUAA--- ---)------ ---------| -AGCUU--C- A--CAA---- 661 ----GGGG-- AUC---G-|G GGUGC----- -GU|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G -C(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-GU --CGA-GGA( G----GAAA- -----U---) GCCU-UG-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCA-UUGG A-UAC-UGGC A-AACUA-GA AUU-----GU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-UCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UGG -GG------- ---------- 1681 -(-AA-C-)- ---------- ---------- ---------- ---------- --UCAU-CGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---AA ---CGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AGG-GA-G A-CU-G-CCC --GG(-G--U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-U-GG -UA--CAAAG AGA-C-G-C- AA-UAC-G(G 2881 -CGA)CGUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-A-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -ACGUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -UACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.pullorum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma pullorum str. CKK. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma pullorum str. CKK. ORGANISM Mycoplasma pullorum. REFERENCE 1 AUTHORS Moalic,P.Y., Kempf,I., Gesbert,F. and Laigret,F. TITLE Identification of two pathogenic avian mycoplasmas as strains of Mycoplasma pullorum JOURNAL Int. J. Syst. Bacteriol. 47, 171-174 (1997) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58504|g1381631 isolate_name= CKK NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 413 a 282 c 419 g 340 t 2922 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-CCUU---U -AGUU-U-GG 421 -GAU-AA-CG A--------- ------CU-- A(-GAAA-)U -GGUC-G--C UAAUACC-GG 481 AU-ACU---- ---------- -------U-A UG-U--U-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UA-AU----A UA-UAAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----GAGG-- AUC---G-|G GGUGC----- -GU|----AA C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UC- -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAC--G-G -C(--UU-CG --)GG-UUGU AAA--CUGC| UGUU-AU-AA 1021 --GG-GAA-- GA-AAAA-AU --CAU-AGA( G----GAAA- -----U---) GCUA-UG-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( C-A--GCAGC NG-GGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GUGU G-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AU-- 1321 -UGCA-UUGG A-UAC-UGGC A-AACUA-GA GUU-----AU G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 UU-G-GN(-G NA-G)GCAG- -CUUACUG-- ---------- ---------- ---------G 1501 ACA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--GA-UU-- -------A|G -CU-GA-UGG -GG------- ---------- 1681 -(-AA-C-)- ---------- ---------- ---------- ---------- --UCAU-CGG 1741 CG--CN---- -----(NAA- ---C)G-CA- UUAA-AUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUAAC G)--CGUAGA 1921 A-CCUUA-CC CGC-UC-UUG ACA-UC|--- ---------U ---UCCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 CUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---GA ---UGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CN-U CUUAC-G-AG -CG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGGAC-GG -UA--CAAAG AGA-A-G-C- AA-GAC-A(G 2881 -CGA)UGUG- ---------- GA-GCAAA-U CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -NNNNAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUUUG-UU -AA-C----- ---------- ---------- -----(---- -CACG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-A A-UC-G--CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACCG.... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.synovia2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma synoviae str. WVU 1853. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma synoviae str. WVU 1853. ORGANISM Mycoplasma synoviae. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04645|g440206 isolate_name= WVU 1853 BASE COUNT 170 a 95 c 151 g 128 t 3832 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCAA CACA-GC-GU 961 G-U-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUAC| UGUU-AU-AU 1021 --GG-GAA-- GA-AAAA-CU --AGU-AUA( G----GAAA- -----U---) GAUA-UU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCA-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GUGU U-AAA-AC-U UG-GAG-C(- UC-A)A-CUC -CA-A-AU-- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUA-GA AUU-----GU U-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GAA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|G -UU-GA-URG ---------- ---------- 1681 -(-AA-AC)- ---------- ---------- ---------- ---------- --C-AU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.synoviae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma synoviae str. WVU 1853. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma synoviae str. WVU 1853. ORGANISM Mycoplasma synoviae. REFERENCE 1 AUTHORS Morrow,C.J. and Thomas,L.M. TITLE 16S rRNA of Mycoplasma synoviae JOURNAL Unpublished (1992) STANDARD No information REFERENCE 2 AUTHORS Morrow,C.J. TITLE Pathogenicity, immunogenicity and strain identification of Australia isolates of Mycoplasma synoviae JOURNAL Thesis (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L07757|g150190 (bases 1 to 1483) isolate_name= WVU 1853 BASE COUNT 435 a 283 c 405 g 360 t 2893 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-CUUU---U -AGAC-U-GG 421 -AAU-AA-CG G--------- ------UG-- A(-GAAA-)U -UAUC-G--C UAAUGCC-GG 481 AU-AUA---- ---------- -------U-A AA-A--A-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-UU----U UA-AGAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----AGAG-- AUC---G-|G GGUGC----- -GG|----AA C--AUUA-G- CAU-G---UU 721 GG-AU-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UUA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUAG-AG-A UCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GA-U 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCU-UGA UGGA|-GCAA CACA-GC-GU 961 G-U-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUAC| UGUU-AU-AU 1021 --GG-GAA-- GA-AAAA-CU --AGU-AUA( G----GAAA- -----U---) GAUA-UU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCA-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GUGU U-AAA-AC-U UG-GAG-C(- UC-A)A-CUC -CA-A-AU-- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUA-GA AUU-----GU U-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GAA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|G -UU-GA-UAG ---------- ---------- 1681 -(-AA-AC)- ---------- ---------- ---------- ---------- --C-AU-CGA 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|U-- ---------U ---CUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAG AGA-A-G-C- AA-AAU-A(G 2881 -UGA)UAUC- ---------- AA-GCAAA-U CUCAA-AAAA -UU-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUU-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-G A-CU-GC-CU A-AGGC-AGG ACC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAUUACCUCC 3361 UUUC|UU.~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.synovia3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma synoviae str. WVU 1853. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma synoviae str. WVU 1853. ORGANISM Mycoplasma synoviae. REFERENCE 1 AUTHORS Morrow,C.J. JOURNAL Thesis, Dept of Veterinary Paraclinical Sciences, The University of Melbourne (1990) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X52083|g44503 (bases 1 to 1518) isolate_name= WVU 1853 BASE COUNT 447 a 287 c 410 g 373 t 2859 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AUU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-AAU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-CUUU---U -AGAC-U-GG 421 -AAU-AA-CG G--------- ------UG-- A(-GAAA-)U -UAUC-G--C UAAUGCC-GG 481 AU-AUA---- ---------- -------U-A AA-A--A-A- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- UU-UU----U UA-AGAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- A--CUA---- 661 ----AGAG-- AUC---G-|G GGUGC----- -GG|----AA C--AUUA-G- CAU-G---UU 721 GG-AU-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- UUA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUAG-AG-A UCG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GA-U 901 GGG-AAUUUU C-CACAAU-- GG-GC-(GAA A)-GCU-UGA UGGA|-GCAA CACA-GC-GU 961 G-U-AG-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUAC| UGUU-AU-AU 1021 --GG-GAA-- GA-AAAA-CU --AGU-AUA( G----GAAA- -----U---) GAUA-UU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCA-U-GU C-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GUGU U-AAA-AC-U UG-GAG-C(- UC-A)A-CUC -CA-A-AU-- 1321 -UGCA-UUGG A-UAC-UGGC A-GACUA-GA AUU-----GU U-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GAA--CA-UA UUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--GA-CU-- -------A|G -UU-GA-UAG ---------- ---------- 1681 -(-AA-AC)- ---------- ---------- ---------- ---------- --C-AU-CGA 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-GUCAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-GAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|U-- ---------U ---CUUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUA--- ---------- ---------- ---------- ----(---CU ---UUA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 ------U-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGA-C-GA -UA--CAAAG AGA-A-G-C- AA-AAU-A(G 2881 -UGA)UAUC- ---------- AA-GCAAA-U CUCAA-AAAA -UU-C-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-UUU-G-UU -AA-C----- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGA-C-G A-CU-GC-CU A-AGGC-AGG ACC-GG-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAUUACCUCC 3361 UUUC|UUACG GAGUACAUUA AUUUUACAAA AGGCAUUUUU U|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.6 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.6 M.HYOPHARYNGIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.6 M.HYOPHARYNGIS_SUBGROUP. ORGANISM 2.16.9.5.6 M.HYOPHARYNGIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyophryn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyopharyngis str. 538N. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopharyngis str. 538N. ORGANISM Mycoplasma hyopharyngis. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04652|g440213 isolate_name= 538N BASE COUNT 169 a 97 c 154 g 127 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-CU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-GU --AGC-AUA( G----GAAA- -----U---) GAUG-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 A-UU-AAG|U CUG---ACGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-CC-- 1321 -CGCG-UUAG A-UAC-UGGU A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAA 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-AA-UGG -G-------- ---------- 1681 -(-GA-G-)- ---------- ---------- ---------- ---------- -CUCAU-UGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-AAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.hyophry2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma hyopharyngis.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma hyopharyngis. ORGANISM Mycoplasma hyopharyngis. REFERENCE 1 AUTHORS Blank,W.A., Erickson,B.Z. and Stemke,G.W. TITLE Phylogenetic relationships of the porcine mycoplasmas Mycoplasma hyosynoviae and Mycoplasma hyopharyngis JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1181-1182 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U58997|g1432059 NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 414 a 285 c 404 g 351 t 2922 others ORIGIN 1 .......... .......... .......... .......GGU GGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- UAA--CGU-A C-CUUU---U -AGUU-U-GA 421 -CAU-AA-CG G--------- ------UC-- G(-GAAA-)C --AAC-G--C UAAUUU--AA 481 AU-ACU---- ---------- -------U-G UG-A--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UU----A CA-UUAAAA- ---GGAGCU- ---------- 601 --(------- ---UUAC--- ---)------ ---------| -GGCUU--C- G--CUA---- 661 ----AAAG-- AUC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGACC-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-CU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GGGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-GU --AGC-AUA( G----GAAA- -----U---) GAUG-UU-GC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 A-UU-AAG|U CUG---ACGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-CC-- 1321 -CGCG-UUAG A-UAC-UGGU A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAA 1441 AU-C-GC(-G AA-G)GCAG- -CUAAUCG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-AA-UGG -G-------- ---------- 1681 -(-GA-G-)- ---------- ---------- ---------- ---------- -CUCAU-UGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGCUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| UAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCUGC AA-------- UGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCC --AA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAG AGA-U-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAG -UC-G-CUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- -UUUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.lipophil 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma lipophilum str. MaBy ATCC 27104 (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma lipophilum str. MaBy ATCC 27104 (T). ORGANISM Mycoplasma lipophilum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 27104 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24581 isolate_name= MaBy BASE COUNT 409 a 283 c 397 g 347 t 2940 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -NC-GUACU- UAA--CGU-A C-CUCU---U -AGUU-U-GA 421 -CAU-AA-CG G--------- ------CC-- G(-GAAA-)C -GGAC-G--C UAAUUUC-AA 481 AU-ACU---- ---------- -------U-G UG-A--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UU----A CA-UAAAA-- ---GGAGCU- ---------- 601 --(------- ---UCAA--- ---)------ ---------| -AGCUU--C- G--CUG---- 661 ----AGAG-- AUC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----CA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGN-C-UCC -(UACG)--G GAG-NC-AG- C-A---GU-A 901 GGG-AAUUUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-CU-G-A U-GAA--G-A CC(--UU-CG --)GG-UUGU AAA--GGGC| NGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-CU --AGU-AUA( G----GAAA- -----U---) GAUA-UU-AG 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---ACGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -NA-A-CU-- 1321 -CGCG-UUGG A-UAC-UGGC A-AGCUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCAUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-UGGAAG- AACA-CCAAG 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GNAA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GA-NGG -G-------- ---------- 1681 -(-AG-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAU 1801 GCU-C---(G CAA)---G-A GU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-NN--G 1861 C-A--CA-AG CGGUGG-AGC N-U-GU-GGU -UUAAU.... .(.......C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUA---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U A--CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCC --AA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UN-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-GA -UA--CAAAG AGA-A-G-C- AA-UAU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-U CUCAA-AAAG -UC-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- -UUUC----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-UC-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.7 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.7 M.AGALACTIAE_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.7 M.AGALACTIAE_SUBGROUP. ORGANISM 2.16.9.5.7 M.AGALACTIAE_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.agalact2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma agalactiae.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma agalactiae. ORGANISM Mycoplasma agalactiae. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44763|g1174206 BASE COUNT 423 a 288 c 404 g 335 t 2926 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CG G--------- ------AU-- G(-GAAA-)C -AUCC-G--A UAAUACM-GA 481 AU-ACU---- ---------- -------U-A UU-A--U-U- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- AG-UA----A UA-UAAAAG- ---GAAGC-- ---------- 601 --(------- ---GYUU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----GAAG-- AUC---G-|G AGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GAUU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--K-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-UA 1021 --GG-GAA-- GA-AAAA-GU --AGC-GUA( G----GAAA- -----U---) GACG-CU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AA-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A WA-AGGAAG- AACA-UCAAU 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-G--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAYGU-U 2221 CG-G-(UUAA -GU)-CCURC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UYG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-A-G-C- GA-AGU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUUAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.agalacti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma agalactiae str. PG2 NCTC 10123. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma agalactiae str. PG2 NCTC 10123. ORGANISM Mycoplasma agalactiae. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: NCTC 10123 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24290 isolate_name= PG2 BASE COUNT 418 a 284 c 407 g 341 t 2926 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~..UUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CG G--------- ------AU-- G(-GAAA-)C -AUCC-G--A UAAUACA-GA 481 AU-ACU---- ---------- -------U-A UU-A--U-U- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- AG-UA----A UA-UAAAAG- ---GAAG--- ---------- 601 --(------- --CGYUY--- ---)------ ---------| ---CUU--C- G--CUA---- 661 ----GAAG-- AUC---G-|G AGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GAUU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UNN -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-UA 1021 --GG-GAA-- GA-AAAA-GU --AGC-GUA( G----GAAA- -----U---) GACG-CU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AA-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCNUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-NGGAAG- AACA-UCAAU 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-NC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-G--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCURC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UA-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-A-G-C- GA-AGU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCN-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUUAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- NCU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovis 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovis str. Donetta (T). ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovis str. Donetta (T). ORGANISM Mycoplasma bovis. REFERENCE 1 AUTHORS Mattsson,J.G., Guss,B. and Johansson,K.-E. TITLE The phylogeny of Mycoplasma bovis as determined by sequence analysis of the 16S rRNA gene JOURNAL FEMS Microbiol. Lett. 115, 325-328 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U02968|g409968 legacy_attribute= clone pMb16S isolate_name= Donetta (T) BASE COUNT 439 a 301 c 420 g 359 t 2857 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ CAAUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CG G--------- ------AU-- G(-GAAA-)C -AUCC-G--A UAAUACC-GA 481 AU-ACU---- ---------- -------U-A UU-A--U-U- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- AG-UA----A UA-UAAAAG- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----AAAG-- AUC---G-|G AGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GAUU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-UA 1021 --GG-GAA-- GA-AAAA-GU --AGC-AUA( G----GAAA- -----U---) GAUG-CU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AA-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-UCAAU 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-A-G-C- GA-AGU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A)CG UGGGGA--UG GAUUACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovis2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovis.. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovis. ORGANISM Mycoplasma bovis. REFERENCE 1 AUTHORS Pettersson,B., Uhlen,M. and Johansson,K. TITLE The phylogeny of some ruminant mycoplasmas based on 16S rRNA sequences JOURNAL Unpublished (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U44767|g1174209 BASE COUNT 428 a 288 c 402 g 338 t 2920 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......C-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CG G--------- ------AU-- G(-GAAA-)C -AUCC-G--A UAAUACC-GA 481 AU-ACU---- ---------- -------U-A UU-A--U-U- ---UUU-(-- --------GC 541 AU-------- -)-GAA---- AG-UA----A UA-UAAAAG- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----AAAG-- AUC---G-|G AGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GAUU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-UA 1021 --GG-GAA-- GA-AAAA-GU --AGC-AUA( G----GAAA- -----U---) GAUG-CU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-G-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AA-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-UCAAU 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -UU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGA 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-G--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAA-GA-G A-CU-G-CCC --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG AGA-A-G-C- GA-AGU-G(G 2881 -UAA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U---AAGUC- GUAA-CAAGG UAUCCC-UAC G(AGA-A).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.felifauc 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma felifaucium. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma felifaucium. ORGANISM Mycoplasma felifaucium. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U15795|g559574 nat_host= Felis concolor BASE COUNT 418 a 291 c 398 g 324 t 2945 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GC-UA (--GC----- ---------- ---------- 241 --------AA -)UA-GC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUCU---C -AGAU-U-GG 421 -GAU-AG-CG A--------- ------AC-- G(-GAAA-)C -GUUC-G--A UAAUACC-AA 481 AU-ACU---- ---------- -------U-A UU-A--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CA-UA----A UA-UAAAA-- ---GAAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUU--C- G--CUG---- 661 ----AGAG-- AUC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----AA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AGU-GUA( G----GAAA- -----U---) GACA-UU-AU 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU C-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AC-- 1321 -CGCG-UUGG A-UAC-UGGC A-AACUG-GA GUU-----AU G-UA-GAGGU UAG-U|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-NA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -A-------- ---------- 1681 -(-AG-A-)- ---------- ---------- ---------- ---------- -UUCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-G--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---NU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 UGGA-CU-C- U-AAG-GA-G A-CU-N-CCC --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-A-G-C- AA-ACA-G(G 2881 -CGA)CUGG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUN-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U---A..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.leophryn 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma leopharyngis. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma leopharyngis. ORGANISM Mycoplasma leopharyngis. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16760|g567069 nat_host= Panthera leo BASE COUNT 423 a 286 c 392 g 335 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........U -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CU A--------- ------AC-- G(-GAAA-)C -GUUG-G--A UAAUACC-AA 481 AU-ACU---- ---------- -------U-A UU-A--G-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- AU-UA----A UA-UAAAAG- ---GAGCCU- ---------- 601 --(------- ---UUAA--- ---)------ ---------| -AGCUC--C- G--CUG---- 661 ----AAAG-- AUC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AUA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-GC-(GAA A)-GCU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-GU --AAC-UUA( G----GAAA- -----U---) GAAG-UU-AC 1081 ---------- -------C-U U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GAAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AC-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAUU 1441 AU-G-UC(-G AA-G)GCGG- -CUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-ACA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -A-------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------- -UUCGU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-CCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCG --GA(-G--U AA)-UCC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-AG -UA--CAAAG AGA-A-G-C- AA-AAU-G(G 2881 -UGA)CAUC- ---------- AA-GCAAA-C CUCAA-AAAA -CU-G-UUC- UCAGUUCGGA 2941 U-UGAAGUC- (UGCAAC-U- C)-GACUUCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAG---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.9.5.8 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.9.5.8 M.MELEAGRIDIS_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.9.5.8 M.MELEAGRIDIS_SUBGROUP. ORGANISM 2.16.9.5.8 M.MELEAGRIDIS_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.meleagr2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma meleagridis str. 17529. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma meleagridis str. 17529. ORGANISM Mycoplasma meleagridis. REFERENCE 1 AUTHORS Pettersson,B., Johansson,K.-E. and Uhlen,M. TITLE Sequence analysis of 16S rRNA from Mycoplasmas by direct solid-phase DNA sequencing JOURNAL Appl. Environ. Microbiol. 60, 2456-2461 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U04649|g440210 isolate_name= 17529 BASE COUNT 170 a 101 c 154 g 122 t 3829 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... ..A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--R-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-UGA( G----GAAA- -----U---) GCAU-UU-AU 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AG-- 1321 -CGCG-UUGG A-UAC-UGGC A-UACUA-GA GUU-----AC G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCG--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -A-------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------- -UUCGU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAA... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.meleagri 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma meleagridis str. 17529. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma meleagridis str. 17529. ORGANISM Mycoplasma meleagridis. REFERENCE 1 AUTHORS Boyle,J.S. and Morrow,C.J. TITLE Avian Mycoplasma phylogeny JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24106 isolate_name= 17529 BASE COUNT 420 a 284 c 398 g 334 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UU (--UU----- ---------- ---------- 241 --------CG -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUUU---U -AGAU-U-GG 421 -GAU-AG-CA A--------- ------GU-- G(-GAAA-)C -AUUU-G--A UAAUACC-GA 481 AU-AUG---- ---------- -------U-A UA-U--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- AU-UU----A UA-UGAAA-- ---GAAGC-- ---------- 601 --(------- --CUUUAA-- ---)------ ---------| --GCUU--C- G--CUA---- 661 ----AAAG-- AGC---G-|G GGUGC----- -GU|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--A-G CC(U-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAA-AU --AAA-UGA( G----GAAA- -----U---) GCAU-UU-AU 1081 ---------- -------C-C U-GA-CGGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -GACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUCG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-AC-U UG-GGG-C(- UC-A)A-CCC -CA-A-AG-- 1321 -CGCG-UUGG A-UAC-UGGC A-UACUA-GA GUU-----AC G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 GCG--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -A-------- ---------- 1681 -(-AA-A-)- ---------- ---------- ---------- ---------- -UUCGU-CGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGAAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUC---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-U AG-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CN-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-ACU-G(G 2881 -UGA)CAGG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AAUUAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.galnarum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma gallinarum str. PG16. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma gallinarum str. PG16. ORGANISM Mycoplasma gallinarum. REFERENCE 1 AUTHORS Boyle,J.S. and Morrow,C.J. TITLE Avian Mycoplasma phylogeny JOURNAL Unpublished (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L24105 isolate_name= PG16 BASE COUNT 423 a 279 c 396 g 336 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCAA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CUCU---U -AGAU-U-GG 421 -GAU-AG-CA G--------- ------UU-- G(-GAAA-)C -AACU-A--U UAAUAAC-AA 481 AU-ACG---- ---------- -------U-A UA-A--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UU----A UA-UAAAA-- ---GUAGC-- ---------- 601 --(------- ---GUUU--- ---)------ ---------| --GCUA--C- A--CUA---- 661 ----AGAG-- AGC---G-|G GGUGC----- -GU|----AA C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GAC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GG-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GA-AC-(GAA A)-GUU-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UA-U- -G)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GA-GAA-- GA-AAAA-AC --CGA-GGA( G----GAAA- -----U---) GCCU-UG-GU 1081 ---------- -------C-U U-GA-CGGU- A-UCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GY -U|-GU-UU- 1261 G-UU-AAG|U CUG---AUGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-CA-- 1321 -CGCA-UUGG A-UAC-UGGC A-UACUA-GA GUU-----AU G-UA-GAGGU UAA-U|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGGAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAU 1441 AU-G-GC(-G AA-G)GCAG- -UUAACUG-- ---------- ---------- ---------G 1501 GCA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGG 1741 CG--CA---- --CG-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--CUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UUG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAG AGA-A-G-C- AA-ACU-G(G 2881 -UGA)CAGG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.fermenta 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma fermentans str. PG18 ATCC 19989. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma fermentans str. PG18 ATCC 19989. ORGANISM Mycoplasma fermentans. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19989 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24289 ATCC 19989 = NCTC 10117 (T) isolate_name= PG18 BASE COUNT 401 a 288 c 416 g 338 t 2933 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GG-UA (--GC----- ---------- ---------- 241 --------AA -)UA-CC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUGCU- CAA--CGU-A C-CCUU---C -AGUU-U-GG 421 -CAU-AG-CG A--------- ------CU-- G(-GAAA-)C -AGUC-G--A UAAUUUC-AA 481 AU-ACU---- ---------- -------C-G UA-G--U-U- ---UUC-(-- --------GC 541 AU-------- -)-GAA---- GA-UU----A CG-GAAAA-- ---GAAG--- ---------- 601 --(------- --CNUUU--- ---)------ ---------| ---CUU--C- G--CUG---- 661 ----GAGG-- AGC---G-|G GGUGC----- -GU|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACN-A A|-GGC-GA- UAA------- -----UG-UU 781 U-NG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-NG- C-N---GU-A 901 GGG-AAUNUU C-CACNAU-- GG-GC-(GAA A)-GCC-UGA UGGA|-GCGA CACA-GC-GU 961 G-A-AG-G-A U-GAA--G-G UC(C-UA-U- -G)GA-UUGU AAA--CUUC| UGUG-GU-AA 1021 --GG-GAA-- GA-AAAG-AC --AGA-AUA( G----GAAA- -----U---) GAUU-UU-GU 1081 ---------- -------U-U U-GA-CGGU- A-CCU-N-AU U-NG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 NAG-CGUUAU CC-GGAAUUN -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AA-- 1321 -CGCG-UUGG A-UAC-UGGC A-GGCUA-GA GUU-----GU G-UN-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAG 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA U--CA-UU-- -------A|G -CU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-U-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-G--(- GAGA-)-CAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 UG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-A-G-C- GA-AGU-G(G 2881 -UGA)CAUG- ---------- GA-GCAAA-C CUCAA-AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGUC- (UGCAAC-U- C)-GACUACA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -NCGUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUNAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-UC-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.bovigeni 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma bovigenitalium str. PG11 ATCC 19852. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma bovigenitalium str. PG11 ATCC 19852. ORGANISM Mycoplasma bovigenitalium. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19852 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24291 ATCC 19852 = NCTC 10122 (T) isolate_name= PG11 BASE COUNT 403 a 303 c 410 g 333 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----GU-GA (--UU----- ---------- ---------- 241 --------UA -)UC-AC--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AN-GUACU- CAA--CGU-A C-CCUU---C -AGUU-U-GG 421 -CAU-AG-CG G--------- ------UU-- G(-GAAA-)C -AACC-G--A UAAUUCC-AA 481 AU-ACU---- ---------- -------C-G UA-G--A-U- ---GCC-(-- --------GC 541 AU-------- -)-GGC---- AU-UU----A CG-GAAAA-- ---GACGC-- ---------- 601 --(------- --CUUAAA-- ---)------ ---------| --GCGU--C- G--CUG---- 661 ----GAGN-- AGC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-U-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U NCG)--GCCN -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UN-U- -G)GG-UUGU AAA--CUNC| NGUG-GU-AA 1021 --GG-GAA-- UA-AAAA-AU --AGU-GUA( G----GAAA- -----U---) GCCA-CU-AU 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CN-A-AC-- 1321 -CGCG-UUGG A-UAC-UGGC A-GACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-CA CUGACA-CUG AG-A------ -------GA- C-GNAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGA U--CA-UU-- -------A|G -CU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CN--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGNUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--CUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGG-GA-G A-CU-G-CCC --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG UGA-A-G-C- AA-CCU-G(G 2881 -UGA)CAGU- ---------- GA-GCAAA-C CACAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUUAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.simbae 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma simbae. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma simbae. ORGANISM Mycoplasma simbae. REFERENCE 1 AUTHORS Brown,D.R., McLaughlin,G.S. and Brown,M.B. TITLE Taxonomy of the feline mycoplasmas Mycoplasma felifaucium, Mycoplasma feliminutum, Mycoplasma felis, Mycoplasma gateae, Mycoplasma leocaptivus, Mycoplasma leopharyngis, and Mycoplasma simbae by 16S rRNA gene sequence comparisons JOURNAL Int. J. Syst. Bacteriol. 45, 560-564 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U16323|g564039 nat_host= Pantherae leo BASE COUNT 410 a 302 c 397 g 319 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ....C-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--CU----- ---------- ---------- 241 --------UG -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CCUU---C -AGAU-U-GG 421 -CAU-AG-CG G--------- ------UU-- G(-GAAA-)C -AACC-G--A UAAUACC-AA 481 AU-ACU---- ---------- -------U-G UU-U--A-G- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- CU-UU----A CA-UAAAA-- ---GACGC-- ---------- 601 --(------- -CUC-AAA-- ---)------ ---------| --GCGU--C- G--CUG---- 661 ----GAGG-- AGC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(C-UA-UG --)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- UA-AAAA-AU --AGU-AUA( G----GAAA- -----U---) GAUA-CU-AU 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 A-UU-AAG|U CUG---GCGU C-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AC-- 1321 -CGCG-UUGG A-UAC-UGGU A-AACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGA U--CA-UU-- -------A|G -CU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AAGAUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCCG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CGG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-CCA|-G U-U---CG-U |GU-C(-GUG A)-GAUGU-C 2221 CG-G-(UUAA -GU)-CCUGA AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UU ---AGN--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCC --GA(-C--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUUCAU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA GUGGC-C-GG -UA--CACAG CGA-C-G-G- AC-ACU-G(G 2881 -AGA)CAGA- ---------G CA-GCAAA-C CACAA-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGGCGUC- (UGCANC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGU-UC UUGUA----C 3061 ACACCGNCC- GUC-AAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUAAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 U......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS M.californ 4376 bp RNA RNA 02-JUL-1998 DEFINITION Mycoplasma californicum str. ST-6 ATCC 33461. ACCESSION No information KEYWORDS No information. SOURCE Mycoplasma californicum str. ST-6 ATCC 33461. ORGANISM Mycoplasma californicum. REFERENCE 1 AUTHORS Weisburg,W.G., Tully,J.G., Rose,D.L., Petzel,J.P., Oyaizu,H., Yang,D., Mandelco,L., Sechrest,J., Lawrence,T.G., Van Etten ,J.L., Maniloff,J. and Woese,C.R. TITLE A phylogenetic analysis of the mycoplasmas: Basis for their classification JOURNAL J. Bacteriol. 171, 6455-6467 (1989) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33461 Sequence information (bases 1 to 4376) Corresponding GenBank entry: M24582 isolate_name= ST-6 BASE COUNT 413 a 301 c 405 g 341 t 2916 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUUUUUCG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-UGU-G -UGC-CU--A AUAC-AUGCA U-GUC-GAGC 121 G--AA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------G-UA (--CU----- ---------- ---------- 241 --------UG -)UA-C---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGA- 361 -A-UG-GG-U GAGU---AAC -AC-GUACU- CAA--CGU-A C-CCUU---C -AGAU-U-GG 421 -CAU-AG-CG G--------- ------UU-- G(-GAAA-)C -AACC-G--A UAAUUCC-AA 481 AU-ACU---- ---------- -------C-G UU-U--U-U- ---AUC-(-- --------GC 541 AU-------- -)-GAU---- AA-UU----A CG-UAAAA-- ---GACGC-- ---------- 601 --(------- -CUUUAAA-- ---)------ ---------| --GCGU--C- G--CUG---- 661 ----GAGG-- AGC---G-|G GGUGC----- -GC|----AA C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-AA- UGA------- -----UG-UU 781 U-AG-C-GG| -G-GUU--(G -AGA)-GACU ----GA-A-- CCG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-U ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-A 901 GGG-AAUAUU C-CACAAU-- GG-AC-(GAA A)-GUC-UGA UGGA|-GCGA CACA-GC-GU 961 G-C-AG-G-A U-GAA--G-G CC(--UA-UG --)GG-UUGU AAA--CUGC| UGUG-GU-AA 1021 --GG-GAA-- UA-AAAA-AC --AGU-GUA( G----GAAA- -----U---) GCCA-CU-GU 1081 ---------- -------A-U U-GA-AUGU- A-CCU-U-AU U-AG--AAAG ---------C 1141 -AACGGCU-A ACUAU-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-AUAG |-GUUG-C-- 1201 AAG-CGUUAU CC-GGAAUUA -UU-GGGC|G UAAA-GCGU- CUG-UAG-GU -U|-GU-UU- 1261 G-UU-AAG|U CUG---GCGU U-AAA-UU-U UG-GGG-C(- UC-A)A-CCC -CA-A-AC-- 1321 -CGCG-UUGG A-UAC-UGGC A-AACUA-GA GUU-----AU G-UA-GAGGU UAG-C|GGAA 1381 UU-CCUUGU- GAA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-AGGAAG- AACA-CCAAC 1441 AU-G-GC(-G AA-G)GCAG- -CUAACUG-- ---------- ---------- ---------G 1501 ACA--UA-UA CUGACA-CUG AG-A------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-UUGA U--CA-UU-- -------A|G -CU-GA-UGG -G-------- ---------- 1681 -(-GA-A-)- ---------- ---------- ---------- ---------- -CUCAU-CGG 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-AUGAU C|C|G-CCU- G-AGUAGUAC 1801 GUU-C---(G CAA)---G-A AU-AAAACUU -AAA-GGAAU UG-ACGGG-G -C-A-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-UG -(AUNNUA-C G)--CGUAGA 1921 A-CCUUA-CC CAC-UC-UUG ACA-UC|--- ---------U ---UCUG--- CAA----AGC 1981 -UAU-A--(- GAGA-)-UAU -A-GUG---- ---------- ---------- --(---GAGG 2041 UUAA------ ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- ---------- ---------| CAG-AA-UGA |---C|A--G 2161 AU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 CG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UC--CUU- 2281 AG--UUAC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAG-GA-G A-CU-G-CCU --GA(-G--U AA)-UCG-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-U CUUAC-G-AG -UG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGC-C-AG -UA--CAAAG UGA-A-G-C- AA-CCU-G(G 2881 -UGA)CAGU- ---------- GA-GCAAA-C CACAA-AAAA -CU-G-GUC- UCAGUUCGGA 2941 U-UGGAGUC- (UGCAAC-U- C)-GACUCCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GU-AGA-(UC -AGCUAC)-G CUA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-GAA--- --CCA-UGGG A--GC-UGG- UA-AU-GCCC -GAA-G-UCG 3121 G-U-U-U--- ---------- ---------- ---------- -----(---- AUUAAC---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------A-A A-CU-GC-CU A-AGGC-AGG ACU-GG-UG- ACU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A-CLO 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.10 CLOSTRIDIUM_AND_RELATIVES. ACCESSION No information KEYWORDS No information. SOURCE 2.16.10 CLOSTRIDIUM_AND_RELATIVES. ORGANISM 2.16.10 CLOSTRIDIUM_AND_RELATIVES. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.10.1 C.LEPTUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.10.1 C.LEPTUM_GROUP. ORGANISM 2.16.10.1 C.LEPTUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.cellulol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium cellulolyticum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium cellulolyticum. ORGANISM Clostridium cellulolyticum. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71847|g431235 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 440 a 354 c 486 g 350 t 2746 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 NGACAG-GNC -GAGC-GC-- UGNC-GGC-G -UGC-CU--A ACAC-AUGCG A-GUC-GAGC 121 G--GA----G UU-ACCUUUA GCNCUGAGUA UUCUU-GGAN AUGAUGCUGN CCCGACAGCG 181 UCAUCCN--- ---------- ---------- (--NNAACAA CCUUAAUGAA AUAUUUAGUU 241 GGAGUUUUGC -)-------- ---------- -----AUCAC GCGUUUUAUC AAAGUGUCAA 301 CACAUAAUAG UAGAA-GAGA AUGUUCAGUG CUGAAGGU-- AAC|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUGU---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C AA-C--G-AA ---GAA-(-- --------GC 541 AU-------- -)-UUC---N UU-GU----U GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GU|----CC A--AUUA-G- CUA-G---UU 721 GG-UG-AU-( GU-AAC-GG) -A-UCACC-A A|-GGC-GA- CGA------- -----UU-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-N 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUA-GU-CA 1021 --GG-GAC-- GA-------- ---------( -----AGAAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CA-GGG-C(- UU-A)A-CCC -UG-G-AGC- 1321 -UGCA-UCUG A-AAC-UAUG U-UUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- ---------U ---AGCGG-- -AA----UNC 1981 -GGC-A--(- GAGA-)-UGU -C-GUA---- GU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| UGC-UA--UA |CA-C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGA-U AA-CA----- ---------- ---------- ---U(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 U-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -AA--CAGAG GGA-A-G-C- UA-AGC-U(G 2881 -CAA)AGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-GGUGGGC- (UGCAAC-C- C)-GCCCACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GU-AGG-(UC -AGU-AU)-A CUG-UCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UC-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGUG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.papyroso 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium papyrosolvens. ACCESSION No information KEYWORDS No information. SOURCE Clostridium papyrosolvens. ORGANISM Clostridium papyrosolvens. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71852|g431242 ATCC 35413 = DSM 2782 BASE COUNT 405 a 328 c 457 g 319 t 2867 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GNC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AGUA GAGUGUN-AG (--CU----- ---------- ---------- 241 --------UU -)CU-UGUGA GUAACU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUGU---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C NN-C--G-AG ---AAA-(-- --------GC 541 AG-U------ -)-UUU---C UU-GU----U GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----ANAG-- AUG---G-|G CCCGC----- -GU|----CC A--AUUA-G- CUA-G---UU 721 GG-UG-AU-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- CGA------- -----UU-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUA-GU-CA 1021 --GG-GAC-- GA-------- ---------( -----AUAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CA-GAG-C(- UU-A)A-CUC -UG-G-AGC- 1321 -UGCA-UCUG A-AAC-UAUG U-UUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- ---------A ---UAGUG-- -AA----UAC 1981 -GGU-A--(- GAGA-)-UAU -C-GUA---- GU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| ACU-AU--UA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GCU- 2281 AG--UUGA-U AA-CAU---- ---------- ---------- ---U(---AA ---GAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 U-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UG -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -AA--CAGAG GGA-A-G-C- UA-AGC-U(G 2881 -CAA)AGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUGGGC- (UGCAAC-C- C)-GCCCACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UC-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.termitid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium termitidis. ACCESSION No information KEYWORDS No information. SOURCE Clostridium termitidis. ORGANISM Clostridium termitidis. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71854|g431245 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 397 a 332 c 459 g 319 t 2869 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G N)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AGAU GAUCUGG-AG (--UN----- ---------- ---------- 241 -------UUA -)CU-UUGGG UUGUCU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUU---C -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C AA-C--G-AG ---GUA-(-- --------GC 541 AU-------- -)-UAC---C UU-GU----U GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GU|----CC A--AUUA-G- CUA-G---UU 721 GG-UG-AU-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- CGA------- -----UU-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CNCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUA-GU-CA 1021 --GG-GAC-- GA-------- ---------( -----AACAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CA-GGG-C(- UC-A)A-CCC -UG-G-AGC- 1321 -UGCA-UCUG A-AAC-UAUG U-UUCUU-GA GUG-----UC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- ---------C ---AGAUG-- -AA----UAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUA---- GU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| AUC-UG--UA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGA-U AA-CAU---- ---------- ---------- ---U(---AA ---GAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 U-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-U-G-C- UA-AGC-U(G 2881 -CAA)AGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUGGGC- (UGCAAC-C- C)-GCCCACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UC-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.celbiopa 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium cellobioparum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium cellobioparum. ORGANISM Clostridium cellobioparum. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71856|g431239 DSM 1351 = ATCC 15832 NB: 5' PCR primer binds at 4..23; actual seq. not determined BASE COUNT 395 a 335 c 461 g 318 t 2867 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AGAU GAUCUGA-AG (--UU----- ---------- ---------- 241 --------UA -)CU-NUGGG UCGUCU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CUUU---C -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C AG-C--G-AG ---GUA-(-- --------GC 541 AU-------- -)-UAC---C UU-GU----U GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----AUAG-- AUG---G-|G CCCGC----- -GU|----CC A--AUUA-G- CUA-G---UU 721 GG-UG-AU-( GU-AAC-GG) -A-CCACC-A A|-GUC-GA- CGA------- -----UU-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUA-GU-CA 1021 --GG-GAC-- GA-------- ---------( -----AACAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCC -UG-G-AGC- 1321 -UGCA-UCUG A-AAC-UAUG U-UUCUU-GA GUG-----UC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UA|--- ---------C ---AGAUG-- -AA----UAG 1981 -UGC-A--(- GAGA-)-UGU -G-CUA---- GU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AC---| AUC-UG--UA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGA-U AA-CAU---- ---------- ---------- ----(---UU ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 U-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-U AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-G-G-C- UA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUGGGC- (UGCAAC-C- C)-GCCCACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGA-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCG 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-UC-GC-CG A-AGGU-GGC GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GCAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Bac.cellul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Bacteroides cellulosolvens. ACCESSION No information KEYWORDS No information. SOURCE Bacteroides cellulosolvens. ORGANISM Bacteroides cellulosolvens. REFERENCE 1 AUTHORS Lin,C., Urbance,J.W. and Stahl,D.A. TITLE Acetivibrio cellulolyticus and Bacteroides cellulosolvens are members of the greater clostridial assemblage JOURNAL FEMS Microbiol. Lett. 124, 151-156 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35517|g529981 BASE COUNT 397 a 324 c 438 g 303 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AGAUAUU-UA (--GC----- ---------- ---------- 241 --------AA -)UA-GAUAU CU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-G C-CUUA---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -UUGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-C AA-U--U-UU ---GUG-(-- --------GC 541 AU-------- -)-CAC---A GA-GU----U GU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GU|----CC A--AUUA-G- CUA-G---UU 721 GG-UG-GU-( GU-AAC-GG) -A-CCACC-A A|-GGC-GA- CGA------- -----UU-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAA-GC-AG- C-A---GU-U 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCCA CGCC-GC-GU 961 U-A-AG-G-A U-GAA--A-G UU(--UU-CG --)GA-UCGU AAA--CCUC| UUUG-AU-UA 1021 --RG-GAC-- GA-------- ---------( -----AUAAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-C-AA A-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AA- 1261 U-GU-AAG|U CAG---AUGU G-AAA-CU-C CG-GAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -UGCA-UCUG A-AAC-UAUG U-UUCUU-GA GUG-----MU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUUG--- -AC----GAU 1981 -GGU-A--(- GAGA-)-UAU -C-AUU---- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CAU---- ---------- ---------- ---U(---AA ---GUU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- UA-AGC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUGGGC- (UGAAAC-U- C)-GCCCACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -G-AGG-A-C G-CU-GC-CG A-A-GU-GGG GCC-GA-UG- AUU-GGGG-C 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG GGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aldrichi 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium aldrichii. ACCESSION No information KEYWORDS No information. SOURCE Clostridium aldrichii. ORGANISM Clostridium aldrichii. REFERENCE 1 AUTHORS Rainey,F.A. and Stackebrandt,E. TITLE 16S rDNA analysis reveals phylogenetic diversity among the polysaccharolytic clostridia JOURNAL FEMS Microbiol. Lett. 113, 125-128 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X71846|g431232 BASE COUNT 398 a 334 c 458 g 313 t 2873 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-NC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------AAUA CAUUGAA-GA (--UU----- ---------- ---------- 241 --------NA -)UC-GGAUA UGUAUU---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--UCU-G C-CUCA---C -ACAG-G-GG 421 -AAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UAGU-G--C UAAUACC-GC 481 AU-NAU---- ---------- -------A-U AG-U--G-AA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AC----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CNCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUG-AU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AA A-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|GGG-AU- 1261 G--C-AAG|U CAG---AUGU G-AAA-UU-C CG-AAG-C(- UC-A)A-CUU -CG-G-CGC- 1321 -UGCA-UCUG A-AAC-UGUA U-CUCUU-GA GUG-----CU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- ---------C ---CANUG-- -AC----GUA 1981 -CUU-A--(- GAGA-)-UAG -G-UAU---- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 G-UAG-U-CU -AA-CU---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acv.cellyt 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetivibrio cellulolyticus str. CD2 ATCC 33288 (T). ACCESSION No information KEYWORDS No information. SOURCE Acetivibrio cellulolyticus str. CD2 ATCC 33288 (T). ORGANISM Acetivibrio cellulolyticus. REFERENCE 1 AUTHORS Lin,C., Urbance,J.W. and Stahl,D.A. TITLE Acetivibrio cellulolyticus and Bacteroides cellulosolvens are members of the greater clostridial assemblage JOURNAL FEMS Microbiol. Lett. 124, 151-156 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 33288 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35516|g529977 ATCC 33288 (T) = NRCC 2248 biol_source= sewage sludge isolate_name= CD2 BASE COUNT 390 a 320 c 451 g 302 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UAUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--UCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UAGU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-U AG-U--G-AA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AC----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUG-AU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AA A-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|GGG-AU- 1261 G--C-AAG|U CAG---AUGU G-AAA-UU-C -G-GGG-C(- UC-A)A-CCC -CG-G-CGC- 1321 -UGCA-UCUG A-AAC-UGUA U-CUCUU-GA GUG-----CU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----GUA 1981 -YCU-A--(- GAGA-)-UAG -G-UAU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 G-UAG-U-CU -AA-CU---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acv.celsol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Acetivibrio cellulosolvens str. BAS ATCC 35928 (T). ACCESSION No information KEYWORDS No information. SOURCE Acetivibrio cellulosolvens str. BAS ATCC 35928 (T). ORGANISM Acetivibrio cellulosolvens. REFERENCE 1 AUTHORS Lin,C., Urbance,J.W. and Stahl,D.A. TITLE Acetivibrio cellulolyticus and Bacteroides cellulosolvens are members of the greater clostridial assemblage JOURNAL FEMS Microbiol. Lett. 124, 151-156 (1994) STANDARD No information COMMENTS Organism information Culture collection: ATCC 35928 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35515|g529976 ATCC 35928 (T) = NRCC 2936 biol_source= sewage sludge isolate_name= BAS BASE COUNT 390 a 320 c 451 g 302 t 2913 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAAUA-UA (--GC----- ---------- ---------- 241 --------AA -)UA-UAUUC ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- CAA--UCU-G C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------UG-- G(-GAAA-)C -UAGU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------A-U AG-U--G-AA ---GUG-(-- --------GC 541 AU-------- -)-CAC---U UU-AC----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--GUG---- 661 ----UGAG-- AUG---A-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUG-AU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AA A-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|GGG-AU- 1261 G--C-AAG|U CAG---AUGU G-AAA-UU-C -G-GGG-C(- UC-A)A-CCC -CG-G-CGC- 1321 -UGCA-UCUG A-AAC-UGUA U-CUCUU-GA GUG-----CU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UA|--- ---------C ---CAUUG-- -AC----GUA 1981 -YCU-A--(- GAGA-)-UAG -G-UAU---- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A--C| AAU-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-C AU-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GU(-GA-C AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-AU -UA--CAGAG GGA-A-G-C- GA-AGC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUCC--AAAA -AU-A-GUC- CCAGUUCAGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 G-UAG-U-CU -AA-CU---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AGAGG-A-C G-CU-GC-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thcellu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermocellum.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermocellum. ORGANISM Clostridium thermocellum. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome and clone Method: Sanger BASE COUNT 387 a 349 c 486 g 296 t 2858 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GAUA UACGGAA-GG (--UU----- ---------- ---------- 241 --------UA -)CC-GGAAG UAUAUC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -CUGU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-C--G-GG ---GCG-(-- --------GC 541 AU-------- -)-CGU---C UU-GU----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUG-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUUC| UUUG-AU-UG 1021 --GG-GAC-- GA-------- ---------( -----AGGAA ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GC -G|-GG-AA- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CCC -CG-G-CGC- 1321 -UGCA-UCUG A-AAC-UGUA U-CUCUU-GA GUG-----CU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AGC 1981 -UCU-A--(- GAGA-)-UAG -G-GCUU--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GC -UA--CAAAG GGA-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thcellum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermocellum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermocellum. ORGANISM Clostridium thermocellum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09173 DSM 1237 (T) = ATCC 27405 legacy_attribute= RELEASE?? C.thcellu2 better seq. if same culture collection NB: strain sequenced is held at the collection of H.W. Morgan , Hamilton, NZ BASE COUNT 382 a 350 c 484 g 293 t 2867 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GAUA UACGGAA-GG (--UU----- ---------- ---------- 241 --------UA -)CC-GGAAG UAUAUC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGGG- UAA--CCU-A C-CUCA---U -ACAG-G-GG 421 -GAU-AA-CA C--------- ------AG-- G(-GAAA-)C -CUGU-G--C UAAUACC-GC 481 AU-------- ---------- ---------- AA-C--G-GG ---GCG-(-- --------GC 541 AU-------- -)-CGU---C CU-GU----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--GUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -A-ACU--(G -AGA)-GGUU ----GG-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUUC| UUUG-AU-UG 1021 --GG-GAC-- GA-------- ---------( -----AGGAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GC -G|-GG-AU- 1261 G--C-AAG|U CAG---AUGU G-AAA-UU-C CG-GGG-C(- UU-A)A-CCC -CG-G-GGC- 1321 -UGCA-UCUG A-AAC-UGUA U-CUCUU-GA GUG-----CU G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----AGC 1981 -UCU-A--(- GAGA-)-UAG -G-GCUU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GC -UA--CAAAG GGA-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCC--AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-UCA 3121 --UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CU-GC-CG A-AGGU-GGG GCA-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.stercor2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium stercorarium.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium stercorarium. ORGANISM Clostridium stercorarium. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome and clone Method: Sanger BASE COUNT 373 a 358 c 510 g 282 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------CG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-GUC---A CA-GU----G GU--AAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGC 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-C AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GU-CG A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUNN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.stercora 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium stercorarium. ACCESSION No information KEYWORDS No information. SOURCE Clostridium stercorarium. ORGANISM Clostridium stercorarium. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09174 NCIMB 11754 (T) = ATCC 35414 BASE COUNT 371 a 357 c 510 g 281 t 2857 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------UG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-GU----A CA-GU----G GU---AAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GG|----UC C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-GC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGA 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UGC-- AGC-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-G AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -GCA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UCGAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 --UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GU-CG A-AGGU-GGG GCA-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Rt51B1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Rt51.B1. str. Rt51.B1. ACCESSION No information KEYWORDS No information. SOURCE str. Rt51.B1. str. Rt51.B1. ORGANISM str. Rt51.B1. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09175 isolate_name= Rt51.B1 BASE COUNT 370 a 357 c 509 g 281 t 2859 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------UG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-GU----A CA-GU----G GU---AAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GG|----UC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-GC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUC-- ---------- ---------- ---------G 1501 GAG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGA 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-CAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-G AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 --UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GU-CG A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thlacti2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermolacticum str. TC 21 DSM 2911. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermolacticum str. TC 21 DSM 2911. ORGANISM Clostridium thermolacticum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2911 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09176 isolate_name= TC 21 NB: strain sequenced is held at the collection of H.W.Morgan , Hamilton, NZ BASE COUNT 369 a 355 c 510 g 280 t 2862 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------UG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGGG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-GUC---A CA-GU----G GU--AAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-GC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA C-AA--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGA 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-G AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 --UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GU-CG A-AGGU-GGG GNN-NG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-NNAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thlacti3 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermolacticum str. TX41. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermolacticum str. TX41. ORGANISM Clostridium thermolacticum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W., Toalster,R. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: aid for their reclassification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X72870|g534935 isolate_name= TX41 NB: paper does not list this accession number BASE COUNT 370 a 355 c 510 g 281 t 2860 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------UG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-NUC---A CA-GU----G GU--AAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-GC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA C-AA--GAAG ---------C 1141 -CACGGCU-A AGUAG-CUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGA 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-G AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCUGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GC-CG A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thlactic 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium thermolacticum str. TC 21 DSM 2911. ACCESSION No information KEYWORDS No information. SOURCE Clostridium thermolacticum str. TC 21 DSM 2911. ORGANISM Clostridium thermolacticum. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: DSM 2911 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09176 isolate_name= TC 21 NB: strain originally designated as TX41, DSM 2910 (T) strain sequenced is held at the collection of H.W.Morgan, Hamilton, NZ BASE COUNT 370 a 355 c 510 g 281 t 2860 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--------- -----GGAU- ---------- ---------- ---------- ---------- 181 ---------- ---CCGUGUU ACGGAGG-UC (--UU----- ---------- ---------- 241 --------UG -)GA-CCGAA GUGGCAUGG- ---------- ---------- ---------- 301 ---------- ---------- ---------- --UGAG---- ---|------ AGUG-GCGG- 361 -A-CG-GG-C GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUA---U -GCUG-G-GG 421 -GAU-AA-CA C--------- ------CG-- G(-GAAA-)C -CGGU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------A-C CA-C--A-GU ---GAC-(-- --------GC 541 AU-------- -)-NUC---A CA-GU----G GU--AAAA-- ---GC----- ---------- 601 --(------- ---UGAG--- ---)------ ---------| -----G--C- G--GCA---- 661 ----UAGG-- AUG---G-|G CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GG-C-- CGG-C|C-GC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G CC(--UU-UG --)GG-UUGU AAA--CUCC| UUUG-AU-CG 1021 --GG-GAC-- GA-------- ---------( ------AGA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AA C-AA--GAAG ---------C 1141 -CACGGCU-A AGUAG-CUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-GU- 1261 G-CC-AAG|U CAG---GUGU G-AAA-UA-C CG-GGG-C(- UU-A)A-CCU -CG-G-GGG- 1321 -UGCA-UCUG A-AAC-UGGU G-CUCUU-GA GUG-----CC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CCCUG-- -AC----GGA 1981 -UGU-A--(- GAGA-)-UAC -A-UCUU--- CU-------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- ----AG--C| AGG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAG---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----AUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --GC(-GA-G AA)-GUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AC -UA--CAGAG GGA-A-G-C- AA-AUC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CCCG--AAAG -GU-C-GUC- CCUGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-UGC- -UAGUA-AUG 3001 GC-AGG-(UC -AGC-AU)-A CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-CCG 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GAGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CC-GC-CG A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCU.. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.viride 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium viride str. T2-7 DSM 6836. ACCESSION No information KEYWORDS No information. SOURCE Clostridium viride str. T2-7 DSM 6836. ORGANISM Clostridium viride. REFERENCE 1 AUTHORS Buckel,W., Janssen,P., Schuhmann,A., Eikmanns,U., Messner,P., Sleytr,U. and Liesack,W. TITLE Clostridium viride sp. nov., a strictly anaerobic bacterium using 5-aminovalerate as growth substrate, previously assigned to Clostridium aminovalericum JOURNAL Arch. Microbiol. 162, 387-394 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 6836 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X81125 biol_source= anaerobic sewage sludge isolate_name= T2-7 BASE COUNT 379 a 338 c 468 g 296 t 2895 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -GCC-AUCUG GAACAAG-UU (--UU----- ---------- ---------- 241 --------CG -)GA-CAAGG GAAAGAUGUG C--------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUG---G -AGUG-G-GG 421 -AAU-AA-CA C--------- ------AU-- C(-GAAA-)G -GUGU-G--C UAAUACC-GC 481 AU-GAU---- ---------- -------G-C AA-C--G-GG ---AUC-(-- --------GC 541 AU-------- -)-GGU---U CU-GU----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----UGAG-- AUG---G-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CC(--CU-CG --)GG-UUGU AAA--CUUC| UUUU-AU-UC 1021 --GA-GAC-- GA-------- ---------( -----AACAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-AU G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AC- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UU-C CA-GGG-C(- UC-A)A-CUC -UG-G-ACC- 1321 -UGCA-UUUG A-AAC-UGUA G-UUCUU-GA GUG-----AU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCGAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- -A-------- 1681 -(CUG-AC)C ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CUCUG-- -AC----CGG 1981 -UCU-A--(- GAGA-)-UAG -G-CC-C--- U--------- ---CC----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G--C| AGA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-CU -UA-ACAGAG GGA-G-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CCCU--AAAA -GG-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- GA-AC-ACCC -GAA-G-UCC 3121 G-UAG-C-CU -AA-CA---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -UGAGG-G-C G-CG-GC-CG A-AGGU-GGG UUC-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGC....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.plauti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium plautii. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium plautii. ORGANISM Eubacterium plautii. REFERENCE 1 AUTHORS Ludwig,W. JOURNAL Unpublished (1993) STANDARD No information COMMENTS amplification_primer= 3': AGAAAGGAGGTGATCC amplification_primer= 5': AGAGTTTGATYMTGGCTCAG NB: Direct data submission to the RDP by: Wolfgang Ludwig Lehrstuhl fuer Mikrobiologie Technische Universitaet Muenchen Arcisstr.21 D-8000 Muenchen 2 Germany ludwig@mbitum2.biol.chemie.tu-muenchen.de Source of DNA sequenced: PCR from genome Amplification primers: BASE COUNT 384 a 350 c 487 g 302 t 2853 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -GUG-CUCAU GACGGAG-GA (--UU----- ---------- ---------- 241 --------CG -)UC-CAAUG GAUUGAGUUA C--------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- GAA--CCU-G C-CUUG---G -AGAG-G-GG 421 -AAU-AA-CA C--------- ------UC-- C(-GAAA-)G -GAGU-G--C UAAUACC-GC 481 AU-GAA---- ---------- -------G-C AG-U--U-GG ---GUC-(-- --------GC 541 AU-------- -)-GGC-U-C UG-AC----U GC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUC---- 661 ----UGAG-- AUG---G-|C CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UA 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-U A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-C-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-GGCAAU-- GG-GC-(GCA A)-GCC-UGA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CU(--UU-CG --)GG-UUGU AAA--CUUC| UUUU-GU-CG 1021 --GG-GAC-- GA-------- ---------( -----AACAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AC G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GG-AU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-AC-U GG-GGG-C(- UC-A)A-CCU -CC-A-GCC- 1321 -UGCA-UUUG A-AAC-UGUA G-UUCUU-GA GUG-----CU G-GA-GAGGC AAU-C|GGAA 1381 UU-CCGUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -AUUGCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- -U-------- 1681 -(CUG-AC)C ---------- ---------- ---------- --------CC -CUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---CACUA-- -AC----GAG 1981 --GC-A--(- GAGA-)-UGC -G-UUAGG-- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA--A| AGU-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 C-ACA-CA-C GUA--CUACA AUGGU-G-GU -UA-ACAGAG GGA-G-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCU--AAAA -GC-C-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGUA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- GA-AC-ACCC -GAA-G-UCC 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G-C G-CG-GC-CG A-AGGU-GGG UUC-GA-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UACGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Sb.termiti 4376 bp RNA RNA 02-JUL-1998 DEFINITION Sporobacter termitidis str. SYR DSM 10068 (T). ACCESSION No information KEYWORDS No information. SOURCE Sporobacter termitidis str. SYR DSM 10068 (T). ORGANISM Sporobacter termitidis. REFERENCE 1 AUTHORS Grech-Mora,I., Fardeau,M.-L., Patel,B.K.C., Ollivier,B., Rimbault,A., Prensier,G., Garcia,J.-L. and Garnier-Sillam,E . TITLE Isolation and characterization of Sporobacter termitidis gen. nov., sp. nov., from the digestive tract of the wood-feeding termite Nasutitermes lujae JOURNAL Int. J. Syst. Bacteriol. 46:512-518 (1996) STANDARD No information COMMENTS Organism information Culture collection: DSM 10068 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: Z49863|g1142586 (bases 1 to 1506) Former RDP Sids: Tb.aceticu isolate_name= SYR NB: former name Termitobacter aceticus BASE COUNT 390 a 340 c 464 g 306 t 2876 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GACAAUU-GG (--UU----- ---------- ---------- 241 --------CG -)CU-GAUUG UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--UCU-G C-CCUU---C -GGAG-G-GG 421 -GAC-AA-CA G--------- ------CU-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------G-U AU-A--U-UC ---AAG-(-- --------GC 541 AU-------- -)-CUU---G GA-UA----U AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAGG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-UG- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GGCC -AGA-C-UCC -(UACG)--G GAG-GG-AG- C-A---GU-G 901 GGG-AAUUUU G-GNCAAU-- GG-GG-(GAA A)-GCC-NUA CCCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--CUUC| UUUG-AC-CA 1021 --GG-GAC-- GA-------- ---------( -----AACAA A--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-GA A-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-U) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GCG-UAG-GC -G|-GG-AG- 1261 U-AC-AAG|U CAG---AUGU G-AAA-UC-U GG-GGG-C(- UU-A)A-CCC -UC-A-AAC- 1321 -UGCA-UUUG A-AAC-UGUA U-UUCUU-GA GUA-----UC G-GA-GAGGC AGG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACG--AC-AA CUGACU-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- -A-------- 1681 -(CUG-AC)C ---------- ---------- ---------- --------CC -CUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|A-CCU- G-GGGAGUAC 1801 GNC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AUU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------G ---UACUA-- -AC----GAA 1981 --GC-A--(- GAGA-)-UGC -A-UUAGG-- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C C-)------- GGG------- ----GA--A| AGU-AU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUN- 2281 AU--UUGC-U A--C------ ---------- ---------- ----(---NC ---GA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 N-CA-CU-C- U-AGC-GA-G G-CU-G-CCG --AU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUA--AUACA AUGUC-U-CU -CA--CAGAG GGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCU--AAAA -UG-C-GUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- GA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-A-C G-CG-GC-CG A-AGGU-GGG UUU-GG-UA- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.desmol 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium desmolans. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium desmolans. ORGANISM Eubacterium desmolans. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34618|g762801 BASE COUNT 371 a 332 c 448 g 297 t 2928 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUUUUAG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GUUAUUUU GGAAAUC-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GAUGG AAUUCAUAAC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--UCU-G C-CUUU---A -GGUG-G-GG 421 -GAU-AA-CA G--------- ------UC-- G(-GAAA-)C -GGCU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-C GU-U--U-UG ---GGG-(-- --------GC 541 AU-------- -)-CCU---U GA-AA----C GU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CCU---- 661 ----UUAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- CUG-G---UU 721 GG-CG-GG-( GN-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-NGA CGCA|-GCAA CGCC-GC-GU 961 G-A-UU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GAUC| UUUA-AU-CA 1021 --GG-GAC-- GA-------- ---------( -----AUUU- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AA G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGU|G UAAA-GGGC- GCG-CAG-NC -G|-GG-NC- 1261 G-GC-AAG|U UGG---GAGU G-AAA-UC-N GG-GGG-C(- UU-A)A-CCC -CC-G-AAC- 1321 -UGCU-UUCA A-AAC-UGCU G-GUCUU-GA GUG-----AU G-GA-GAGGC AGG-C|GGAA 1381 UU-CCGUGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UA-CGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 ACA--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUU-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGNN-N -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---CGGUG-- -AC----CGU 1981 -CCU-A--(- GAGA-)-UAG -G-ACUU--- N--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----N--C| AAC-GG-UGA |---C|A--G 2161 NU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-N-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CG--GUU- 2281 AG--UUGA-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 U-CA-CU-C- U-AGC-CG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UN -N-AAUC-AU CAU-G-CC-C CNUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-GU -CAUACAGAG GGA-A-G-C- AA-AAU-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CCCU--AAAA -GC-U-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGU- CA-AU-ACCC -GAA-G-UCC 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGG-G-C G-CG-GC-CG A-AGGU-AGG GGU-GG-UA- AU........ 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sporosp2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sporosphaeroides.. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sporosphaeroides. ORGANISM Clostridium sporosphaeroides. REFERENCE 1 AUTHORS Both,B., Buckel,W., Kroppenstedt,R. and Stackebrandt,E. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X66002|g534888 BASE COUNT 362 a 309 c 434 g 271 t 3000 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)NN-UGAAC UUAGC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAW--CCU-G C-CUUU---C -RGAG-G-GG 421 -GAU-AM-CG UUC------- ------CU-- G(-AAAA-)C --AAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AU-U--G-GU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A CC-GG----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----CAAG-- AUG---G-|A CUCGC----- -GU|----CC G--AUYA-G- CCA-G---UK 721 GA-UK-GG-( GU-AAA-GG) -C-CCACC-A A|-AGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-A-GG-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UGUC-CU-UG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-A-AG G-AG--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CGG---GCGU G-AAA-GC-U GU-GGG-C(- UU-A)A-CCC -AC-A-AAU- 1321 -UGCG-UUCG A-AAC-UGGA G-GGCUU-GA GUG-----AA G-UA-GAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GCU--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- -U-------- 1681 -(CUG-AC)C ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CN-AG CNGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UG-UUG ACA-UC|--- ---------C ---AACU--- -AA----CGA 1981 -GGC-A--(- GAGA-)-UGC -A-UUAG--- GU-------- --NGC----- --(UN----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GG-UCCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UG--AUU- 2281 AG--UUS--U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-CA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GC -CAA-CNGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCNAA-C CCCC--AAAA -GC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-C- C)-GCCUACA -UGAAGU-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGCG- AAUAC-GUU- NNN-GGG-NC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-ACCC -GAA-G-CCA 3121 -AUAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-GU-CG A-AGGU-AGG AUU-GG-CG- ACN-GGGG-N 3301 N---AAGUC- GUAA-CAAGG UAACC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sporosph 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium sporosphaeroides. ACCESSION No information KEYWORDS No information. SOURCE Clostridium sporosphaeroides. ORGANISM Clostridium sporosphaeroides. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59116 ATCC 25781 = NCIMB 10672 (T) = VPI 4527-1 BASE COUNT 360 a 308 c 429 g 272 t 3007 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)...UGAAC UUAGC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUU---C -AGAG-G-GG 421 -GAU-AA-CG U--------- ------UC-- U(-GAAA-)A -GAAC-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AU-U--G-GU ---GUC-(-- --------GC 541 AU-------- -)-GGC---A CC-GG----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----AAAG-- AUG---N-|N CUUGC----- -GU|----CC G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAA-GG) -C-CCACC-A A|-AGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-GUU--(G -AGA)-GACU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA UGCC-GC-GU 961 G-A-GG-G-A A-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UGUC-CU-UG 1021 --GU-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCC-A-AG G-AG--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U CGG---GCGU G-AAA-GC-U GU-GGG-C(- UU-A)A-CCC -AC-A-AAU- 1321 -UGCG-UUCG A-AAC-UGGA G-GGCUU-GA GUG-----AA G-UA-GAGGU AGG-C|GGAA 1381 UU-CCCNGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GCU--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(UCU-GA)C ---------- ---------- ---------- --------CC -NUUCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AACU--- -AA----CGA 1981 -GGC-A--(- GAGA-)-UGC AU-UAGG--- U--------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| AGU-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UG--AUU- 2281 AG--UCG--U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-CA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGU-C-GC -CA-ACAGAG GGA-A-G-C- CA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-C CCCC--AAAA -GC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-C- C)-GCCUACA -UGAAGU-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-ACCC -GAA-G-CCA 3121 A-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-UU-GU-CG A-AGGU-AGG AUU-GG-CG- ACU-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.leptum 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium leptum. ACCESSION No information KEYWORDS No information. SOURCE Clostridium leptum. ORGANISM Clostridium leptum. REFERENCE 1 AUTHORS Woese,C.R., Yang,D. and Mandelco,L. TITLE Phylogenetic analysis of some clostridia and their relatives JOURNAL Unpublished (1991) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: M59095 ATCC 29065 (T) = VPI 12192 NB: VPI number needs to be checked BASE COUNT 360 a 303 c 419 g 263 t 3031 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)...UGGAU UUAAC----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUU---C -AGAG-G-GG 421 -GAU-AA-CG U--------- ------UC-- U(-GAAA-)A -GAAC-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CA-A--U-UU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GG-UU----G AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----GAAG-- AUG---N-|A CUCGC----- -GU|----CC G--AUUA-G- CCA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CNACC-A A|-AGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-NGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCUC| UGUU-CU-UA 1021 --GU-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-GCU-A-AG G-AG--AAAG ---------C 1141 -UCC.....A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GC-GA- 1261 G-GC-AAG|U CAG---GCGU G-AAA-UC-U AU-GGG-C(- UU-A)A-CCC -AU-A-AAC- 1321 -UGCG-CUUG A-AAC-UGUC U-UGCUU-GA GUG-----AA G-UA-GAGGU AGG-C|GGAA 1381 UU-CCCNGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GCU--UU-AA CUGACG-CUG AA-G------ -------CA- C-GAAA-GC- AU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GNN -GG-GGG--- ---------- 1681 -(UCU-NA)- ---------- ---------- -C-------- -------CCN -NUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGN-N -N-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-NGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-NC-UUG ACA-UC|--- ---------C ---GUCU--- -AA----CGA 1981 -AGC-A--(- GAGA-)-UGC AU-UAGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| AGG-CG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CNNGC AA-------- CGAG-C--GC AACNC-UU-G |-UU--UCU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGA-GA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C NNUAU-G-AC -CU--GGGC- 2821 C-ACA-CA-C GUA--CUACA AUGGC-U-GU -AN-ACAGAG GGA-A-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CCCU--AAAA -GC-A-GUC- CCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-C- C)-GCCUGCG -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-ACCC -GAA-G-CCA 3121 G-UAG-U-UC -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-C G-CU-GU-CG A-AGGU-AGG AUU-GG-CG- ACN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.bromii 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus bromii.. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus bromii. ORGANISM Ruminococcus bromii. REFERENCE 1 AUTHORS Rainey,F.A. and Janssen,P.H. TITLE Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus Ruminococcus JOURNAL FEMS Microbiol. Lett. 129 (1), 69-73 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85099|g854409 BASE COUNT 399 a 318 c 445 g 316 t 2898 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----A CU---GUU-- ---------- ---------- ---------- ---------- 181 ---------- -------UUG AAAGAUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AUGAA UUUGA----- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---UUU---- AGU|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- UAA--CCU-G C-CUUC---A -AGAG-G-GG 421 -GAU-AA-CA U--------- ------UC-- U(-GAAA-)A -GAAU-G--C UAAUACC-GC 481 AU-GAC---- ---------- -------A-U AU-C--G-GA ---ACC-(-- --------AC 541 AU-------- -)-GGU---U CU-GA----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUUA-- ---)------ ---------| -----U--C- G--CUU---- 661 ----GAAG-- AUG---G-|A CUCGC----- -GU|----CC G--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GAC-CG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AG-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUUC| UUUU-AU-UA 1021 --AG-GAC-- GA-------- ---------( -----AAAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-A-AU G-AA--UAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UU- 1261 U-GC-AAG|U CAG---AUGU G-AAA-UC-U AU-GGG-C(- UC-A)A-CCC -AU-A-AAC- 1321 -UGCA-UUUG A-AAC-UGUA G-AGCUU-GA GUG-----AA G-UA-GAGGC AGG-C|GGAA 1381 UU-CCCCGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UG-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 GCU--UU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(UCU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---AACU--- -AA----CGA 1981 -AGU-A--(- GAGA-)-UAC AU-UAGG--- UGC------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| AAG-UUGAGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CU--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-AG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GU -UA-ACAGAG GGA-A-G-C- AA-GAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-C CCCU--AAAA -AC-A-UUC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-UG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGA-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GC-CGG- UA-AU-ACCC -GAA-G-UCA 3121 G-UAG-U-CC -AA-C----- ---------- ---------- -----(---- -CUCGU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CU-GC-CG A-AGGU-AGG AUU-GG-CG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.cellulos 4376 bp RNA RNA 02-JUL-1998 DEFINITION Clostridium cellulosi str. (T). ACCESSION No information KEYWORDS No information. SOURCE Clostridium cellulosi str. (T). ORGANISM Clostridium cellulosi. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09177 isolate_name= (T) NB: from M. Jian-hua, Tianjin, China BASE COUNT 374 a 348 c 485 g 291 t 2878 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAUAGU-AC (--UU----- ---------- ---------- 241 --------CG -)GU-UCUAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- CAA--CCU-G C-CCUG---A -GCAC-G-GG 421 -GAU-AG-CG U--------- ------CU-- G(-GAAA-)C -GGAC-G--G UAAUACC-GC 481 AU-AAU---- ---------- -------G-U AC-G--U-UG ---GAG-(-- --------GC 541 AU-------- -)-CUC---C GA-UG----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GGAA--- ---)------ ---------| ----UC--C- A--CUC---- 661 ----AAGG-- AUG---G-|G CUCGC----- -GU|----CC G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-UG- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GU-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CCUC| UGUC-UU-UC 1021 --GG-GAC-- GA-------- ---------( -----AGGAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-A-AA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GCG-UAG-GC -G|-GG-UU- 1261 G-UC-AAG|U UGG---AUGU G-AAA-UC-U CU-GGG-C(- UU-A)A-CUC -AG-A-GGU- 1321 -UGCA-UUCA A-AAC-UGGC G-AUCUU-GA GUG-----AG G-UA-GAGGC AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUGCUG-- ---------- ---------- ---------G 1501 GCC--UU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGA U--UG-CU-- -------A|G -GU-GU-GGG -UG-G----- -A-------- 1681 -(CUG-AC)C ---------- ---------- ---------- --------CC -AUCCG-UGC 1741 CG--GA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------C ---ACCG--- -AA----UCC 1981 -GGA-A--(- GAGA-)-UUC -U-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AG---| CGG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AAU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AUU-AA-G A-CU-G-CCG --UU(-GA-U AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-C-GC -CA-ACAAAG GGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCGAA-U CCCC--AAAA -GC-G-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-C- C)-GCCUGCA -UGAAGA-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GN-NGG- CA-AC-ACCC -GAA-G-UCG 3121 -UUUG-C-GU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-G-C G-GC-GC-CG A-AGGU-GGG AUC-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.siraeu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Eubacterium siraeum. ACCESSION No information KEYWORDS No information. SOURCE Eubacterium siraeum. ORGANISM Eubacterium siraeum. REFERENCE 1 AUTHORS Ludwig,W. and Woese,C.R. JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L34625|g762808 ATCC 29066 = VPI T9-50-2 (T) BASE COUNT 392 a 316 c 432 g 300 t 2936 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUUAACAA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ -----UGAA- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CCUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --GGAU---- ---|--C--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-G G-CUCU---A -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-RAY---- ---------- -------G-U AU-C--G-GG ---AUG-(-- --------GC 541 AU-------- -)-CUU---C CU-GA----U AC--CAAA-- ---GAU---- ---------- 601 --(------- ----UUU--- ---)------ ---------| ----AU--C- G--CUU---- 661 ----AGAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GUC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-GAUAUU G-GACAAU-- GG-GG-(GCA A)-CCC-UGA UCCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CCUC| UGUU-GA-CG 1021 --GA-GAA-- AA-------- ---------( ------AAA- ---------) ---------- 1081 ---------- ---------- U-GA-UGGU- A-UCC-G-UU U-AG--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GUG-UAG-GC -G|-GN-NU- 1261 A-UC-AAG|U CAG---AAGU G-AAA-AU-U AC-GGG-C(- UC-A)A-CUC -GU-A-ACC- 1321 -UGCU-UUUG A-AAC-UGAC A-UUCUU-GA GUG-----AA G-UA-GAGGC AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUGCUG-- ---------- ---------- ---------G 1501 NCU--UU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- --------CC -CUUCG-UGC 1741 CG--GA---- --GU-(AAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CN--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CN -(CUNNAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---AGUG--- -AC----CGC 1981 -CUA-A--(- GAGA-)-UUA -G-GCUU--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAC-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UYG--U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-NGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-UU -UA-ACAAAG AGA-A-G-C- AA-AGC-C(G 2881 -CGA)GGCA- ---------- GA-GCAAA-U CUCC--AAAA -AA-C-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GU-AGG-(UC -AGC-AU)-A CUA-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CC-GC-CG A-AGGU-GGN GUU-GA-UG- AUU-AGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Fus.praus2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Fusobacterium prausnitzii. ACCESSION No information KEYWORDS No information. SOURCE Fusobacterium prausnitzii. ORGANISM Fusobacterium prausnitzii. REFERENCE 1 AUTHORS Wang,R.-F., Cao,W.-W. and Cerniglia,C.E. TITLE Phylogenetic analysis of Fusobacterium prausnitzii based upon the 16S rRNA gene sequence and PCR confirmation JOURNAL Int. J. Syst. Bacteriol. 46, 341-343 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85022|g695518 ATCC 27766 = VPI C13-20-A BASE COUNT 400 a 346 c 464 g 285 t 2881 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-UCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -CGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----C ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G AGAGAGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UU-CU CAA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --G|-CG--- AGUG-GCGA- 361 -A-CG-GG-U GAGU---AAC -GC-GUGAG- GAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAC-AA-CA G--------- ------UU-- G(-GAAA-)C -GACU-G--C UAAUACC-GC 481 AU-AAG---- ---------- -------C-C CA-C--G-AC ---CUG-(-- --------GC 541 AU-------- -)-CGG---G UA-GA----G GG--AAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|C CUCGC----- -GU|----CC G--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UC-GG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA CGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--CUCC| UGUU-GU-UG 1021 --AG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-A-AC A-AG--GAAG ---------U 1141 -GACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) N-A-C-GUAG |-GUCA-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-CAG-GC -G|-NG-AA- 1261 G-GC-AAG|U UGG---AAGU G-AAA-UC-C AU-GGG-C(- UC-A)A-CCC -AU-G-AAC- 1321 -UGCU-UUCA A-AAC-UGUU U-UUCUU-GA GUA-----GU G-CA-GAGGU AGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGGAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUACUG-- ---------- ---------- ---------G 1501 GCA--CC-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GU- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- A-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-UGG -AG-G----- ---------- 1681 -(AUU-GA)C ---------- ---------- ---------- -------CCC -UUCAG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AAG-UC-UUG ACA-UC|--- ---------C ---UGCG--- -AC----GCG 1981 -CAU-A--(- GAAA-)-UAU -G-UGUU--- U--------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| C-C-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-NUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UG--GUC- 2281 AG--UUAC-U N--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-GA-CU-C- U-GGC-CA-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C UUUAU-G-AC -UU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-G-UU -AA-ACAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GG-C- ---------- GA-GCAAA-A CUCA--GAAA -CU-UCGUC- CCAGUUCGGA 2941 C-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC U-GUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- GG-GG-ACCC -GAA-G-UCG 3121 G-UAG-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-C G-CC-GC-CG A-AG-U-AAA ACU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG A(-GA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.albus 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus albus.. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus albus. ORGANISM Ruminococcus albus. REFERENCE 1 AUTHORS Rainey,F.A. and Janssen,P.H. TITLE Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus Ruminococcus JOURNAL FEMS Microbiol. Lett. 129 (1), 69-73 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85098|g854408 BASE COUNT 392 a 315 c 447 g 304 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--AG----C -----GAA-- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AGAG-UG (--CU----- ---------- ---------- 241 --------UG -)CA-CUCU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---CUA---- --G|-CU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--UCU-G C-CUUU---C -GGAG-A-GG 421 -GAU-AC-CA A--------- ------UU-- G(-GAAA-)C -GAUU-G--U UAAUACC-UC 481 AU-AAC---- ---------- -------A-U AA-C--G-AA ---UCC-(-- --------GC 541 AU-------- -)-GAC---U UU-GU----U AU--CAAAU- ---GA----- ---------- 601 --(------- ----AUU--- ---)------ ---------| -----U--C- G--CCG---- 661 ----AAAG-- AUG---A-|G CUCGC----- -GU|----CU G--AUUA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GCC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-G UU(--UU-AG --)GA-UUGU AAA--CCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GG-AU- 1261 U-GC-AAG|U CAG---GUGU G-AAA-UU-U AG-GGG-C(- UU-A)A-CCC -CU-G-AAC- 1321 -UGCA-CUUG A-AAC-UGUA G-UUCUU-GA GUG-----AA G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GCU--UU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(ACU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 -G--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---UACG--- -CA----UAG 1981 -CAU-A--(- GAGA-)-UAU -G-UGAAA-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CGU-AU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CU--GUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AGC-AG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-U-GU -UA-ACAGAG GGA-A-G-C- AA-AAC-A(G 2881 -UGA)UGUG- ---------- GA-GCAAA-A CCCU--AAAA -GC-A-GUC- UUAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-C- C)-GCCUACA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACG--- --CCA-UGGG A--GU-CGG- UA-AC-ACCC -GAA-G-CCU 3121 G-UGU-U-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CA-GU-CG A-AGGU-GGG AUU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.callid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus callidus.. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus callidus. ORGANISM Ruminococcus callidus. REFERENCE 1 AUTHORS Rainey,F.A. and Janssen,P.H. TITLE Phylogenetic analysis by 16S ribosomal DNA sequence comparison reveals two unrelated groups of species within the genus Ruminococcus JOURNAL FEMS Microbiol. Lett. 129 (1), 69-73 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85100|g854410 BASE COUNT 386 a 312 c 443 g 317 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGC-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AACAUUG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UAAUG UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CUCU---G -AGAG-U-GG 421 -GAU-AG-CU U--------- ------CU-- G(-GAAA-)C -GGAU-G--G UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CA-U--G-GA ---UUC-(-- --------GC 541 AU-------- -)-GUU---U CU-GU----G AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----AGAG-- AUG---G-|A CUCGC----- -GU|----CU G--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UGUU-GA-AG 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUC-U-UU U-AG--AAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GG-AU- 1261 G-GC-AAG|U CAG---AUGU G-AAA-AC-U AU-GGG-C(- UC-A)A-CCC -AU-A-GAC- 1321 -UGCA-UUUG A-AAC-UGUU G-UUCUU-GA GUG-----AG G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-AGGAGG- AACA-UCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GCC--UU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(ACU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---AGUG--- -AC----GUA 1981 -CCU-A--(- GAGA-)-UAG -G-UAUU--- U--------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- -----A---| CAC-AA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--AUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAU-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AU AUA-ACAGAG GGA-A-G-C- AA-UAC-A(G 2881 -CGA)UGUG- ---------- GA-GCAAA-U CCCC--AAAA -AU-U-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-AGA-(UC -AGC-AU)-G CUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- UA-AC-ACCC -AAA-G-CCG 3121 G-UCG-U-CU -AA-CC---- ---------- ---------- -----(---- -UUCG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-U G-CC-GU-CU A-AGGU-GGG AUU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--U. .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.flvfac 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus flavefaciens str. C94 ATCC 19208. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus flavefaciens str. C94 ATCC 19208. ORGANISM Ruminococcus flavefaciens. REFERENCE 1 AUTHORS Janssen,P.H., Evers,S., Rainey,F.A., Weiss,N., Ludwig,W., Harfoot,C.G. and Schink,B. TITLE Lactosphaera gen. nov., a new genus of lactic acid bacteria, and transfer of Ruminococcus pasteurii Schink 1984 to Lactospaera pasteurii comb. nov. JOURNAL Int. J. Syst. Bacteriol. 45, 565-571 (1995) STANDARD No information COMMENTS Organism information Culture collection: ATCC 19208 Sequence information (bases 1 to 4376) Corresponding GenBank entry: X85097|g854412 ATCC 19208 = NCFB 2213 isolate_name= C94 BASE COUNT 393 a 301 c 435 g 310 t 2937 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .GGC-GGN-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UAAUUUG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UAGGU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-UU--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CUUA---G -AGAG-A-GG 421 -GAU-AG-CU U--------- ------CU-- G(-GAAA-)C -GGAU-G--G UAAUACC-UC 481 AU-AAC---- ---------- -------A-U AA-C--U-GA ---ACC-(-- --------GC 541 AU-------- -)-GAU---U UA-GU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUC---- 661 ----UGAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-UU-AA 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-U-AG G-AG--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGGA-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GG-AG- 1261 C-GC-AAG|U CAG---AUGU G-AAA-UA-C AU-GGG-C(- UC-A)A-CCC -AU-G-GGC- 1321 -UGCA-UUUG A-AAC-UGUG U-UUCUU-GA GUG-----AA G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GCU--UU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(ACU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 -G--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---UAUG--- -CA----UAG 1981 -UCU-A--(- GAGA-)-UAG -A-UGAAA-- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-AUAAGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-CC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AU -UA-ACAAAG AGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCGAA-U CUCA--AAAA -AU-U-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-U-CU -AA-CA---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -UGAGG-A-C G-CC-GC-CG A-AGGU-GGG AUU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ruc.flvfa2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Ruminococcus flavefaciens str. C94 NCFB 2213. ACCESSION No information KEYWORDS No information. SOURCE Ruminococcus flavefaciens str. C94 NCFB 2213. ORGANISM Ruminococcus flavefaciens. REFERENCE 1 AUTHORS Willems,A. and Collins,M.D. TITLE Phylogenetic analysis of Ruminococcus flavefaciens, the type species of the genus Ruminococcus, does not support the reclassification of Streptococcus hansenii and Peptostreptococcus productus as Ruminococci JOURNAL Int. J. Syst. Bacteriol. 45, 572-575 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X83430|g929820 NCFB 2213 = ATCC 19208 isolate_name= C94 BASE COUNT 392 a 306 c 436 g 309 t 2933 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .........C -GAAC-GC-- UGGC-GGC-A -CGC-UU--A ACAC-AUGCA A-GUC-GAAC 121 G--GA----G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UAAUUUG-AG (--UU----- ---------- ---------- 241 --------UA -)CU-UAGGU UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-UU--- AGUG-NCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CUUA---G -AGAG-A-GG 421 -GAU-AG-CU U--------- ------CU-- G(-GAAA-)C -GGAU-G--G UAAUACC-UC 481 AU-AAC---- ---------- -------A-U AA-C--U-GA ---ACC-(-- --------GC 541 AU-------- -)-GAU---U UA-GU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- A--CUC---- 661 ----UGAG-- AUG---G-|G CUCGC----- -GU|----CU G--AUUA-G- AUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GUC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -G-ACU--(G -AGA)-GGUU ----GA-A-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCGA UGCC-GC-GU 961 G-G-AG-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-UU-AA 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUU-U-AG G-AG--GAAG ---------C 1141 -UCCGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GGAG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGA- GCG-UAG-GC -G|-GG-AG- 1261 C-GC-AAG|U CAG---AUGU G-AAA-UA-C AU-GGG-C(- UC-A)A-CCC -AU-G-GGC- 1321 -UGCA-UUUG A-AAC-UGUG U-UUCUU-GA GUG-----AA G-UA-GAGGU AAG-C|GGAA 1381 UU-CCUGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-AGGAGG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 GCU--UU-UA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA U--UA-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(ACU-GA)C ---------- ---------- ---------- -------CCC -UUCCG-UGC 1741 CG--CA---- --GN-(UAA- ---C)A-CA- AUAA-GUAAU C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGUGG-AGU A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-UC-UUG ACA-UC|--- ---------G ---UAUG--- -CA----UAG 1981 -UCU-A--(- GAGA-)-UAG -A-UGAAA-- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAU-AU-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-NUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC ANCCC-UU-A |-CC--UUU- 2281 AG--UUGC-U A--C------ ---------- ---------- ----(---GC ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|A 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --UU(-GA-C AA)-AAC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-AC -CU--GGGC- 2821 U-ACA-CA-C GUA--CUACA AUGGC-A-AU -UA-ACAAAG AGA-A-G-C- AA-GAC-G(G 2881 -UGA)CGUG- ---------- GA-GCGAA-U CUCA--AAAA -AU-U-GUC- CCAGUUCAGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-CGG- UA-AC-ACCC -GAA-G-UCG 3121 G-UAG-U-CU -AA-CA---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -UGAGG-A-C G-CC-GC-CG A-AGGU-GGG AUU-GA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A21n 4376 bp RNA RNA 02-JUL-1998 DEFINITION clone A21n.. ACCESSION No information KEYWORDS No information. SOURCE clone A21n. ORGANISM clone A21n. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91444|g987749 BASE COUNT 92 a 73 c 119 g 74 t 4018 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GUGG-C-- 1201 AAG-CGUUAC UC-GGAUUUA -UU-GGGU|G UAAA-GGGC- GUG-UAG-GC -G|-GU-UG- 1261 C-GC-AAG|U CGA---ACGU G-AAA-UC-C CA-UGA-C(- UU-A)A-UCA -UG-G-AAC- 1321 -UGCA-UUCG A-AAC-UGCG C-GACUC-GA GUA-----UG G-GA-GAGGA GAG-C|GGAA 1381 UU-CCCGGU- GUA-AGG(-G UGAAA)-UCU -GU-GGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 CCC--AU-AA CUGACG-CUG AG-A------ -------GG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--CA-CU-- -------A|G -GU-GU-UGG -UU-C----- ---------- 1681 -(GUA-UA)- ---------- ---------- ---------- --------GA -GCCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUGCU C|C|A-CCU- G-GGGACUAC 1801 GAC.....(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.A34o 4376 bp RNA RNA 02-JUL-1998 DEFINITION AEspoe hard. ACCESSION No information KEYWORDS No information. SOURCE AEspoe hard. ORGANISM AEspoe hard. REFERENCE 1 AUTHORS Pedersen,K., Arlinger,J., Ekendahl,S. and Hallbeck,L. TITLE 16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to AEspoe hard rock laboratory, Sweden JOURNAL FEMS Microbiol. Ecol. 19, 249-262 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X91457 library_source= AEspoe hard rock 10-626m below ground surface DNA BASE COUNT 99 a 65 c 114 g 77 t 4021 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) ......GGAG |-GUGG-C-- 1201 GAG-CGUUAC UC-GGAUUUA -UU-GGGU|G UAAA-GGGC- AGG-UAG-GU -G|-GC-UC- 1261 A-AC-AAG|U GGG---GAGU G-AAA-UC-U CC-GG--C(- UU-A)A-UCG -GA-G-AAC- 1321 -AGCU-UUCC A-AAC-UAUU G-AGCUU-GA GUG-----UG G-GA-GAGGA GAA-U|GGAA 1381 CU-CCUGGU- GUA-AGG(-G UAAAA)-UCU GGU-AGAG-A UC-AGGAGG- AACA-CCAU- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--AC-AA CUGACA-CUG AA-C------ -------UG- C-GAAA-GC- UA-GGG-GA- 1561 GA-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-U UC----CUA- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------G|G -GU-GU-UUC -CU------- ---------- 1681 -(GUA-AC)A ---------- ---------- ---------- ---------G -GGAGG-CGC 1741 CG--AN---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|A-CCU- G-GGGACUAC 1801 GG......(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... .......... |......... 2281 .......... .......... .......... .......... ....(---.. ---...--). 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... ........|. 2701 .......... .......... .......... ....(..... ..)....... .......... 2761 .......... .......... .......... .......... .......... .......... 2821 .......... .......... .......... .......... .......... ........(. 2881 ....)..... .......... .......... .......... .......... .......... 2941 .......... (......... .)........ .......... .......... .......... 3001 .......(.. .......).. .......... .......... .......... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.16SX-2 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 16SX-2. str. 16SX-2. ACCESSION No information KEYWORDS No information. SOURCE str. 16SX-2. str. 16SX-2. ORGANISM str. 16SX-2. REFERENCE 1 AUTHORS Li,T., Bisaillon,J.-G., Villemur,R., Letourneau,L., Bernard ,K., Lepine,F. and Beaudet,R. TITLE Isolation and characterization of a new bacterium carboxylating phenol to benzoic acid under anaerobic conditions JOURNAL J. Bacteriol. 178, 2551-2558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27711 isolate_name= 16SX-2 BASE COUNT 414 a 335 c 458 g 307 t 2862 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- -----AAAUG CGGAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AUUGA CGGAUUU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--A-AA ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-GU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AGA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( C--CAGCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-CC-C CC-AGG-C(- UC-A)A-CUU -GG-G-GAU- 1321 -UGCA-UAUG A-AAC-UGAU G-GGCUC-GA GUG-----UC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GU-(AAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-AC-UUG ACA-UC|--- ---------U ---CCUGC-A UAA----UCC 1981 -GU----A(- AUGGG)---A -U--GAAA-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----A----| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--CUU- 2281 AG--UUGC-U AA-CAU---- ---------- ---------- ----(---UU ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AAG-UA-G A-CU-G-CCG --GA(-GA-C AA)-UUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -AA--CAACG GGA-A-G-C- AA-ACC-A(G 2881 -UGA)UGGC- ---------- AA-GCAAA-U CCCU-AAAAA -AU-A-CUC- CCAGUUCAGA 2941 U-UGUUCUC- (UGCAAC-C- C)-GAGAACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-CCG 3121 G-UGA-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CC-GU-CG A-AGGU-GAA GCC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.16SX-1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. 16SX-1. str. 16SX-1. ACCESSION No information KEYWORDS No information. SOURCE str. 16SX-1. str. 16SX-1. ORGANISM str. 16SX-1. REFERENCE 1 AUTHORS Li,T., Bisaillon,J.-G., Villemur,R., Letourneau,L., Bernard ,K., Lepine,F. and Beaudet,R. TITLE Isolation and characterization of a new bacterium carboxylating phenol to benzoic acid under anaerobic conditions JOURNAL J. Bacteriol. 178, 2551-2558 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: U27710 isolate_name= 16SX-1 BASE COUNT 416 a 334 c 456 g 308 t 2862 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- -----AGAUA UGGAAGU-AG (--UU----- ---------- ---------- 241 --------UA -)CU-AUUGA AAUAUCU--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---A -AGAG-G-GG 421 -GAU-AA-CA C--------- ------CG-- A(-GAAA-)U -CGGU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--A-AA ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-GU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GC|----CU G--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AGA-AG) -C-CUACC-A A|-GGC-GA- CGA------- -----UC-AG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 G-GGAAUAUU G-CACAAU-- GG-AG-(GAA A)-CUC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-G-AG-G-A C-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--CUCC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( C--CAGCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GC -G|-GC-CU- 1261 G-UU-AAG|U CAG---AUGU G-AAA-CC-C CC-AGG-C(- UC-A)A-CUU -GG-G-GAU- 1321 -UGCA-UAUG A-AAC-UGAU G-GGCUC-GA GUG-----UC G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACG--AU-AA CUGACG-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-U-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CA---- --GU-(AAA- ---C)G-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGA-AC-UUG ACA-UC|--- ---------U ---CCUGC-A UAA----UCC 1981 -GU----A(- AUGGG)---A -U--GAAA-- ---------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----A----| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--CUU- 2281 AG--UUGC-U AA-CAU---- ---------- ---------- ----(---UU ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AAG-UA-G A-CU-G-CCG --GA(-GA-C AA)-UUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-AU -AA--CAACG GGA-A-G-C- AA-ACC-A(G 2881 -UGA)UGGC- ---------- AA-GCAAA-U CCCU-AAAAA -AU-A-CUC- CCAGUUCAGA 2941 U-UGUUCUC- (UGCAAC-C- C)-GAGAACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGGG A--GU-UGG- AA-GC-ACCC -GAA-G-CCG 3121 G-UGA-C-UU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGA-G-A G-CC-GU-CG A-AGGU-GAA GCC-AA-UG- ACU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.10.2 C.BOTULINUM_GROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.10.2 C.BOTULINUM_GROUP. ORGANISM 2.16.10.2 C.BOTULINUM_GROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.1 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.10.2.1 THERMOANAEROBACTER_SUBGROUP. ACCESSION No information KEYWORDS No information. SOURCE 2.16.10.2.1 THERMOANAEROBACTER_SUBGROUP. ORGANISM 2.16.10.2.1 THERMOANAEROBACTER_SUBGROUP. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acl.therm2 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Anaerocellum thermophilum" str. Z-1203 ?. ACCESSION No information KEYWORDS No information. SOURCE "Anaerocellum thermophilum" str. Z-1203 ?. ORGANISM "Anaerocellum thermophilum". REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09180 isolate_name= Z-1203 ? NB: strain either Z-1320 or Z-1203 BASE COUNT 360 a 366 c 531 g 275 t 2844 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-CAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GAUGGUGG UUGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GGCUGCCAUC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-UC ---AGC-(-- --------GC 541 AU-------- -)-GCU---G GU-GU----G GU--GAAA-- ---GGGU-A- ----GCU--- 601 --(------- ---GUAGA-- ---)------ ----GGC--| -UAUGC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---CC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GGA----G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGAGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U UGA---GCGU G-AAA-UU-U UU-GGG-C(- UC-A)A-CCC -AA-A-AGG- 1321 -AGCG-UUCA A-AAC-UGCC A-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-UA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCC 1981 -UGC-C--(- GAAA-)-GGU -G-GGGGUG- CC-------- UGACC----- --(NAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N A-)------- GGUUA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --CC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-U-G-C- GA-AGG-A(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCA--AAAA -GC-C-GGU- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG-U--- ---------- ---------- ---------- -----(---- -UAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Acl.thermo 4376 bp RNA RNA 02-JUL-1998 DEFINITION "Anaerocellum thermophilum" str. Z-1203 ?. ACCESSION No information KEYWORDS No information. SOURCE "Anaerocellum thermophilum" str. Z-1203 ?. ORGANISM "Anaerocellum thermophilum". REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09180 isolate_name= Z-1203 ? NB: strain either Z-1320 or Z-1203 BASE COUNT 359 a 366 c 533 g 274 t 2844 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-CAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GAUGGUGG UUGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GGCUGCCAUC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-UC ---AGC-(-- --------GC 541 AU-------- -)-GCU---G GU-GU----G GU--GAAA-- ---GGGU-A- ----GCU--- 601 --(------- ---GUAGA-- ---)------ ----GGC--| -UAUGC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---CC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GGA----G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGAGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U UGA---GCGU G-AAA-UU-U UU-GGG-C(- UC-A)A-CCC -AA-A-AGG- 1321 -AGCG-UUCA A-AAC-UGCC A-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCC 1981 -UGC-C--(- GAAA-)-GGU -G-GGGGUG- CC-------- UGACC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUUA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --CC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG GGA-U-G-C- GA-AGG-A(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCA--AAAA -GC-C-GGU- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG-U--- ---------- ---------- ---------- -----(---- -UAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Wai35 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Wai35 str. Wai35 B1. ACCESSION No information KEYWORDS No information. SOURCE str. Wai35 str. Wai35 B1. ORGANISM str. Wai35. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09182 isolate_name= Wai35 B1 BASE COUNT 356 a 366 c 530 g 275 t 2849 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---GGUAGCU -UGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GUAGCUACC- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G UU-GU----G GU--GAAA-- ---GGGU-A- ----GCU--- 601 --(------- ---UUUGA-- ---)------ ----GGC--| -UAUAC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GGA----G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U UGA---GCGU G-AAA-UU-U UU-GGG-C(- UC-A)A-CCC -AA-A-AGG- 1321 -AGCG-CUCG A-UAC-UGCU G-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-GGGGUG- CC-------- UGCGC----- --(GGU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GUGCA----- ----GG-AG| CCU-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --CC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG----- ---------- ---------- ---------- -----(---- -AUGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.RI2B1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. RI2.B1. str. RI2.B1. ACCESSION No information KEYWORDS No information. SOURCE str. RI2.B1. str. RI2.B1. ORGANISM str. RI2.B1. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09181 geog_source= Raoul Island, NZ isolate_name= RI2.B1 BASE COUNT 355 a 366 c 529 g 275 t 2851 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---GGUAGCU -UGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GUGGCUACC- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- CAA--CCU-A C-CCUC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G UU-GU----G GU--GAAA-- ---GGGU-A- ----GCU--- 601 --(------- ---UUUGA-- ---)------ ----GGC--| -UAUAC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GGA----G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CU- 1261 G-GU-AAG|U UGA---GCGU G-AAA-UU-U UU-GGG-C(- UC-A)A-CCC -AA-A-AGG- 1321 -AGCG-CUCG A-UAC-UGCU G-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-GGGGUG- CC-------- UGCGC----- --(GGU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GUGCA----- ----GG-AG| CCU-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --CC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG----- ---------- ---------- ---------- -----(---- -AUGG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC N(GGA-A)CN UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ccs.saccha 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC 43494. ACCESSION No information KEYWORDS No information. SOURCE Caldicellulosiruptor saccharolyticus str. Tp8T.6.3.3.1 ATCC 43494. ORGANISM Caldicellulosiruptor saccharolyticus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43494 Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09178 Former RDP Sids: Ccs.saccha ATCC 43494 = DSM 8903 (T) isolate_name= Tp8T.6.3.3.1 NB: strain originally designated as Tp8 GB has no organism name former name "Caldocellum saccharolyticum" BASE COUNT 357 a 367 c 534 g 277 t 2841 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GAUGGUGG UUGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GGCUGCCAUC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-UC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G AU-GU----G GU--GAAA-- ---GGGU-A- ----GCC--- 601 --(------- ---GGGGA-- ---)------ ----GGC--| -UAUAC--U- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGG A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-GC-GAG|U UAA---GCGU G-AAA-GC-C UU-AGG-C(- UC-A)A-CCU -AA-G-GAU- 1321 -UGCG-CUUA A-UAC-UGCA U-AGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -CUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-GGGGUG- CC-------- UGACC----- --(GU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GGUUA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGCGU-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG-U--- ---------- ---------- ---------- -----(---- -UAG------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SP83 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. SP83. str. SP83. ACCESSION No information KEYWORDS No information. SOURCE str. SP83. str. SP83. ORGANISM str. SP83. REFERENCE 1 AUTHORS Peinemann-Simon,S., Ludwig,W., Vogt,B. and Gottschalk,G. TITLE Taxonomic analysis of the thermophilic bacterium strain SP83 producing H2 from starch at 75 oC JOURNAL Syst. Appl. Microbiol. 18, 231-236 (1995) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X93020|g1070389 geog_source= near Sirmione, Italy biol_source= hot sediment of creek isolate_name= SP83 BASE COUNT 364 a 366 c 529 g 274 t 2843 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---GGUAGCC AUGAAGG-UG (--AA----- ---------- ---------- 241 --------G- -)AG-CUGGA GUGGCUAUC- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCUC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G UU-GU----G GU--GAAA-- ---GGGU-A- ----GCC--- 601 --(------- ---GGGGA-- ---)------ ----GGC--| -UAUAC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGAGG A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-GC-AAG|U UAA---GCGU G-AAA-GC-C UU-AGG-C(- UC-A)A-CCU -AA-G-GAG- 1321 -UGCG-CUUA A-UAC-UGCA U-AGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -CUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -AA----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-GGGGUG- CC-------- UGACC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GGUUA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --CC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCUAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG----- ---------- ---------- ---------- -----(---- -GCAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 UUU.|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.COMPB1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. COMP.B1. str. COMP.B1. ACCESSION No information KEYWORDS No information. SOURCE str. COMP.B1. str. COMP.B1. ORGANISM str. COMP.B1. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09179 isolate_name= COMP.B1 BASE COUNT 361 a 365 c 527 g 277 t 2846 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GGUAGUUA UUGAAG--GU (--GA----- ---------- ---------- 241 --------A- -)GA-GC-UA AGUNGUUACC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- CAA--CCU-A C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA C--------- ------GU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-UC ---AUC-(-- --------GC 541 AU-------- -)-GGU---G AU-GU----G GU--GAAA-- ---GGGU-A- ----GCC--- 601 --(------- ---GGGGA-- ---)------ ----GGC--| -UAUAC--U- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GU-A-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GGA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A A-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGG A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UA- 1261 U-GC-GAG|U UAA---GCGU G-AAA-GC-C UU-AGG-C(- UC-A)A-CCU -AA-G-GAU- 1321 -UGCG-CUUA A-UAC-UGCA U-AGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGG -U-GGGGUG- CC-------- UGUUC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GAGCA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGC---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGCGU-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-AGG-U--- ---------- ---------- ---------- -----(---- -UAA------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -------G-C U-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.cellul 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. ORGANISM Thermoanaerobacter "cellulolyticus". REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09183 IFO 14436 = DSM 8991 isolate_name= NA 10 BASE COUNT 351 a 373 c 532 g 275 t 2845 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GAUGGUGG UUGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GGCUGCUACC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-A C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGGU-A- ----GCC--- 601 --(------- ---GGUGA-- ---)------ ----GGC--| -UAUUC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGG A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GGC- 1321 -UGCG-CUUA A-UAC-UGCU C-GGCUA-GA GUA-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -CUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -AA----CCC 1981 -UGC-C--(- GAAA-)-GGU -G-GGGGUG- CC-------- UGCGC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GUGCA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCUAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCU----- ---------- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tab.cellu2 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. ACCESSION No information KEYWORDS No information. SOURCE Thermoanaerobacter "cellulolyticus" str. NA 10 IFO 14436. ORGANISM Thermoanaerobacter "cellulolyticus". REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09183 IFO 14436 = DSM 8991 isolate_name= NA 10 BASE COUNT 350 a 373 c 532 g 276 t 2845 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --GAUGGUGG UUGAAGG-UG (--AU----- ---------- ---------- 241 --------G- -)AG-CUGGA GGCUGCUACC ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-A C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGGU-A- ----GCC--- 601 --(------- ---GGUGA-- ---)------ ----GGC--| -UAUUC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GUAGG A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-U UG-GGG-C(- UC-A)A-CCC -CA-A-GGC- 1321 -UGCG-CUUA A-UAC-UGCU C-GGCUA-GA GUA-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-UA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -CUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- UUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -AA----CCC 1981 -UGC-C--(- GAAA-)-GGU -G-GGGGUG- CC-------- UGCGC----- --(GAU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G A-)------- GUGCA----- ----GG-AG| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGU-U-G-C- GA-AGG-C(G 2881 -CGA)GCCG- ---------- GA-GCUAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCU----- ---------- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Rt8B7 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Rt8.B7. str. Rt8.B7. ACCESSION No information KEYWORDS No information. SOURCE str. Rt8.B7. str. Rt8.B7. ORGANISM str. Rt8.B7. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09184 isolate_name= Rt8.B7 BASE COUNT 352 a 367 c 522 g 267 t 2868 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGUAG CUAUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGAAU AGCUACC--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGUGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-C UG-GGG-C(- UC-A)A-CCC -UG-G-GGC- 1321 -UGCG-CUUA A-UAC-UGCC U-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -AA----CCU 1981 -GCC-C--(- GAAA-)-GGU -G-GGGGUG- CC-------- GGCN------ --(GUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GNGCA----- ----GG-AG| CCU-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGA-U-G-C- GA-AGG-C(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCG----- ---------- ---------- ---------- -----(---- -GGUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC N(NGA-A)CG UGCNGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Ok9B1 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Ok9.B1. str. Ok9.B1. ACCESSION No information KEYWORDS No information. SOURCE str. Ok9.B1. str. Ok9.B1. ORGANISM str. Ok9.B1. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09186 geog_source= Orakei Korako, NZ isolate_name= Ok9.B1 BASE COUNT 353 a 367 c 525 g 268 t 2863 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGUAG CUAUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CU-GGAUU AGCUACC--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGUGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-C UG-GGG-C(- UC-A)A-CCC -UG-G-GGC- 1321 -UGCG-CUUA A-UAC-UGCC U-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGU -GUCGGGUG- CC-------- GGCUN----- --(NUA---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------G U-)------- GAGCA----- ----GG-AA| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU GAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGA-G-G-C- GA-AGG-C(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCG----- ---------- ---------- ---------- -----(---- -GGUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CG UGCGGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Rt8B_4 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Rt8B.4. str. Rt8B.4. ACCESSION No information KEYWORDS No information. SOURCE str. Rt8B.4. str. Rt8B.4. ORGANISM str. Rt8B.4. REFERENCE 1 AUTHORS Dwivedi,P.P., Gibbs,M.D., Saul,D.J. and Bergquist,P.P.L. TITLE Cloning, sequencing and over-expression in Escherichia coli of a multifunctional xylanase gene (xynA) from the thermophilic bacterium Rt8B.4 JOURNAL Unpublished (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L35151|g598079 isolate_name= Rt8B.4 BASE COUNT 359 a 371 c 526 g 272 t 2848 others ORIGIN 1 .......... .......... .......CGG AUCCAAUUGA AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGUAG CUAUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGAAU AGCUACC--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAG--- ---)------ ---------| ----UC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -U-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A G-GAA--G-C CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGUGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-C UG-GGG-C(- UC-A)A-CCC -UG-G-G-C- 1321 -UGCG-CUUA A-UAC-UGCC U-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -AA----CCU 1981 -GCC-C--(- GAGA-)-GGG -U-GGGGUG- CC-------- UGCU------ --(UUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GAGCA----- ----GG-AA| CCC-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGA-U-G-C- GA-AGG-C(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCG----- ---------- ---------- ---------- -----(---- -GGUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC G(GGA-A)CC UGCGGU--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.Rt8B15 4376 bp RNA RNA 02-JUL-1998 DEFINITION str. Rt8. str. Rt8. B15. ACCESSION No information KEYWORDS No information. SOURCE str. Rt8. str. Rt8. B15. ORGANISM str. Rt8. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09185 isolate_name= Rt8. B15 BASE COUNT 351 a 368 c 523 g 270 t 2864 others ORIGIN 1 .......... .......... .......... .......... ...GUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACGC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- -----GGUAG CUAUGAA-GG (--GU----- ---------- ---------- 241 --------AA -)CC-GGAAU AGCUACC--- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGAG- UAA--CCU-G C-CCCC---A -GCAC-G-GG 421 -GAU-AA-CA G--------- ------CU-- C(-GAAA-)G -GGCU-G--C UAAUACC-CG 481 AU-GGG---- ---------- -------A-C CA-C--G-GC ---AUC-(-- --------GC 541 AU-------- -)-GAU---G CU-GU----G GU--GAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--GCU---- 661 ----GGGG-- AUG---G-|G CUCGC----- -GG|----CC C--AUCA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- CGA------- -----CG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -AGUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -ACA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GC-G 901 GGG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GG-G-A U-GGA--A-G CC(--UU-CG --)GG-GUGU AAA--CCUC| UUUG-GA-CG 1021 --GG-GAG-- AA-------- ---------( -----GGUGA A--------) ---------- 1081 ---------- ---------- --GA-UAGU- A-CCC-G-UU U-AA--AAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UG- 1261 G-GU-AAG|U UAA---GCGU G-AAA-UC-C UG-GGG-C(- UC-A)A-CCC -UG-G-GGC- 1321 -UGCG-CUUA A-UAC-UGCC U-GGCUU-GA GUG-----CG G-GA-GAGGA CGG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCGUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG A--UG-CU-- -------A|G -GU-GU-GGG -GG-AG---- ---------- 1681 -(AAG-GA)- ---------- ---------- ---------- -------CUC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- AUAA-GCAUC C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CGGUGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------C ---CGGG--- -GA----CCU 1981 -GCC-C--(- GAAA-)-GGU -U-GGGGUG- CC-------- UGCU------ --(GUU---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GNGCA----- ----GG-AG| CCU-GG-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-C AG-CGG---- ---------- ---------- ---G(---UG ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCG --UC(-GA-U GA)-GGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-U-GC -UA--CAGAG GGA-U-G-C- GA-AGG-C(G 2881 -CGA)GCUG- ---------- GA-GCGAA-U CCCAA-AAAA -GC-A-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CAG- CA-AC-ACCU -GAA-G-ACA 3121 C-GCG----- ---------- ---------- ---------- -----(---- -GGUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G C-GU-GU-UG A-AGGU-GGG GCU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAC C(GGA-A)CG UGCNGC--UG GAUCACCUCC 3361 U...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.2 4376 bp RNA RNA 09-JAN-1999 DEFINITION 2.16.10.2.2 CLR.FERVIDUS_ASSEMBLAGE. ACCESSION No information KEYWORDS No information. SOURCE 2.16.10.2.2 CLR.FERVIDUS_ASSEMBLAGE. ORGANISM 2.16.10.2.2 CLR.FERVIDUS_ASSEMBLAGE. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ox.pfennig 4376 bp RNA RNA 02-JUL-1998 DEFINITION Oxobacter pfennigii. ACCESSION No information KEYWORDS No information. SOURCE Oxobacter pfennigii. ORGANISM Oxobacter pfennigii. REFERENCE 1 AUTHORS Collins,M.D., Lawson,P.A., Willems,A., Cordoba,J.J., Fernandez-Garayzabal,J., Garcia,P., Cai,J., Hippe,H. and Farrow,J.A. TITLE The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations JOURNAL Int. J. Syst. Bacteriol. 44, 812-826 (1994) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X77838|g572658 Former RDP Sids: C.pfenning C.pfennigi BASE COUNT 405 a 332 c 458 g 290 t 2891 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---GUAG-CA (--GC----- ---------- ---------- 241 --------AA -)UG-UAUC- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -GAU-AG-CC A--------- ------CC-- N(-GAAA-)G -GGUN-A--U UAAUACC-GC 481 AU-GAU---- ---------- -------G-C GG-A--G-CU ---UGG-(-- --------GC 541 AU-------- -)-CCA---U U--------- -----AAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAGAU GGAGAUG-|G CCCGC----- -GG|---ACC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( AU-AGC-AG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -A-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UUUA-AU-CA 1021 --GG-GAU-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CAGU- A-CCU-G-AG G-AA--UAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-AA- 1261 C-UU-AAG|U CAG---AUGU G-AAA-GC-C CG-GGG-C(- UU-A)A-CCU -CG-G-GAU- 1321 -UGCA-UUUG A-AAC-UNNN --AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AU-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGA G--UG-CU-- -------A|G -GU-GU-AGG -GG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------ACC -CUCUG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GCACU C|C|G-CCU- G-GGGACUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -C-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- --------GU ---AACA--- -AA----UCC 1981 -UUC-A--(- GAGA-)UCGA -G-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| UGU-UA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-A AA-CAG---- ---------- ---------- ----(---UU ---UGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|U 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCG --AU(-GA-G AA)-AUC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-AG -AA--CAAUG AGA-A-G-C- AA-AAC-U(G 2881 -CGA)AGUG- ---------- GA-GCAAA-U CU-AA-AAAA -CU-A-GUC- CCAGUUCGGA 2941 U-UGAUGGC- (UGCAAC-C- C)-GCCAUCA -UGAAGC-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CUG- CA-AC-ACCC -GAA-G-CCU 3121 G-UGA-G-CU -AA-C----- ---------- ---------- -----(---- -UAUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CA-GU-CG A-AGGU-GGG GCC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(AGA-A)GU CGCUGA.... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Tmb.celer1 4376 bp RNA RNA 02-JUL-1998 DEFINITION Thermobrachium celer str. NZ35T. ACCESSION No information KEYWORDS No information. SOURCE Thermobrachium celer str. NZ35T. ORGANISM Thermobrachium celer. REFERENCE 1 AUTHORS Engle,M., Li,Y., Rainey,F., DeBlois,S., Mai,V., Reichert,A., Mayer,F., Messner,P. and Wiegel,J. TITLE Thermobrachium celere gen. nov., sp. nov., a rapidly growing thermophilic, alkalitolerant, and proteolytic obligate anaerobe JOURNAL Int. J. Syst. Bacteriol. 46 (4), 1025-1033 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X99238|g1666673 isolate_name= NZ35T NB: Added by Bergey's to RDP Release 6.0 tree BASE COUNT 342 a 337 c 466 g 259 t 2972 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ ...C------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---G -AGAG-G-GG 421 -GAU-AA-CA G--------- ------GU-- C(-GAAA-)G -GCCU-G--C UAAUACC-GC 481 AU-AAC---- ---------- -------G-C UA-A--G-AU ---GCC-(-- --------GC 541 AU-------- -)-GGC---G UC-UU----A GC--CAAA-- ---GGU---- ---------- 601 --(------- ---UAAU--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CC 1021 --CU-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-AGG-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U GGG---GUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAC- 1321 -UGCA-CUCC A-AAC-UGGA G-AGCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- ---------- 1681 -(CGA-AG)- ---------- ---------- ---------- --------CC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACCG--- -AA----CCC 1981 -UGU-G--(- GAAA-)-CAC -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGU-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CU-CA-AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CU-GU-CG A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)C. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clr.indicu 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caloramator indicus str. IndiB4 ACM 3982 (T). ACCESSION No information KEYWORDS No information. SOURCE Caloramator indicus str. IndiB4 ACM 3982 (T). ORGANISM Caloramator indicus. REFERENCE 1 AUTHORS Chrisostomos,S., Patel,B.K.C., Dwivedi,P.P. and Denman,S.E. TITLE Caloramator indicus sp. nov., a new thermophilic anaerobic bacterium isolated from the deep-seated nonvolcanically heated waters of an Indian Artesian aquifer JOURNAL Int. J. Syst. Bacteriol. 46, 497-501 (1996) STANDARD No information COMMENTS Sequence information (bases 1 to 4376) Corresponding GenBank entry: X75788|g472911 Former RDP Sids: Cld.indicu geog_source= Surat District, Gujarat State, India biol_source= natural discharge areas of artesian aquifer isolate_name= IndiB4 NB: former name Caldoanaerobacter indicus BASE COUNT 363 a 363 c 503 g 284 t 2863 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------GG GGGUAGG-AG (--CU----- ---------- ---------- 241 --------UN -)CU-CCUUG AACC------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CCUU---G -AGAG-G-GG 421 -GAU-AA-CA G--------- ------GU-- C(-GAAA-)G -GCCU-G--C UAAUACC-GC 481 AU-AAU---- ---------- -------G-C UA-A--G-AU ---GCC-(-- --------GC 541 AU-------- -)-GGC---G UC-UU----A GC--CAAA-- ---GGU---- ---------- 601 --(------- ---UAAU--- ---)------ ---------| ----UC--C- G--CUC---- 661 ----AAGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CC 1021 --CU-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-AGG-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-NGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-UC- 1261 U-UU-AAG|U GGG---GUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAC- 1321 -UGCA-CUCC A-AAC-UGGA G-AGCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- ---------- 1681 -(CGA-AG)- ---------- ---------- ---------- --------CC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACCG--- -AA----CCC 1981 -UGU-G--(- GAAA-)-CAC -G-GGGG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CGG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-CC--UUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAA-GG-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CU -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAUG AGU-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-U CU-CA-AAAA -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GCGGGU-(CA -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-GC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CU-GU-UG A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Clr.fervid 4376 bp RNA RNA 02-JUL-1998 DEFINITION Caloramator fervidus str. RT4. B1 ATCC 43204 (T). ACCESSION No information KEYWORDS No information. SOURCE Caloramator fervidus str. RT4. B1 ATCC 43204 (T). ORGANISM Caloramator fervidus. REFERENCE 1 AUTHORS Rainey,F.A., Ward,N.L., Morgan,H.W. and Stackebrandt,E. TITLE Phylogenetic analysis of anaerobic thermophilic bacteria: Aid for their classification JOURNAL J. Bacteriol. 175, 4772-4779 (1993) STANDARD No information COMMENTS Organism information Culture collection: ATCC 43204 (T) Sequence information (bases 1 to 4376) Corresponding GenBank entry: L09187 Former RDP Sids: C.fervidus isolate_name= RT4. B1 NB: strain sequenced is held at the collection of H.W.Morgan , Hamilton,NZ former name Clostridium fervidus BASE COUNT 360 a 373 c 519 g 267 t 2857 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--GA----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ------GAGG GCGAGGG-GG (--UU----- ---------- ---------- 241 --------U- -)AC-UCUGA G-CCUC---- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CCCA---A -GGAG-G-GG 421 -GAU-AA-CA G--------- ------GU-- C(-GAAA-)G -GCCU-G--C UAAUACC-GC 481 AU-AAA---- ---------- -------G-C UA-C--U-GG ---GGC-(-- --------GC 541 AU-------- -)-GCU---U UG-GU----A GC--CAAA-- ---GGAGC-- ---------- 601 --(------- ---GAUA--- ---)------ ---------| --GCUC--C- G--CCU---- 661 ----UGGG-- AUG---G-|G CCCGC----- -GG|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-GG 781 U-AG-C-CG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CGG-C|C-AC -ACUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-GC-G-A A-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-UU-CC 1021 --CU-GAC-- GA-------- ---------( -----AGGAA G--------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-AGG-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GC-CC- 1261 C-UU-AAG|U GAG---GUGU G-AAA-UC-C CU-GGG-C(- UC-A)A-CCC -AG-G-AAC- 1321 -UGCA-CUUC A-AAC-UGGG G-GGCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UC-GGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GC-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CU-GU--A 1621 AAC-G-AUGG G--UG-CU-- -------A|G -GU-GU-GGG -GG-G----- ---------- 1681 -(CGU-AG)- ---------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--UA---- --GU-(UAA- ---C)A-CA- UUAA-GCACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UC|--- ---------C ---ACCG--- -AA----CCC 1981 -UGU-G--(- GAAA-)-CAC -G-GGGG--- UG-------- -CCCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A U-)------- GGGG------ ----AG---| CGG-UG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---U(---UC ---GGG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCA --GG(-GU-U AA)-CCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-CC -CU--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-AC -UA--CAGAG AGA-A-G-C- GA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCGAA-A UCUUG-AAAG -GU-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AU)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- CA-AC-ACCC -GAA-G-CCA 3121 G-UGG-G-CU -AA-CCC--- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CU-GU-CG A-AGGU-GGG GCU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.histolyt 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 376 a 309 c 443 g 296 t 2952 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-U--U-UU ---AAU-(-- --------GC 541 AU-------- -)-GUU---A GA-AA----G AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCNNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -N-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UNA CGCA|-GCAA CGCN-GN-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NNNNGUA-A) U-A-C-NUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCAU- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C NN-GGG-C(- UU-A)A-CCC -CA-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGG -GG-U----- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- --------AC -UCCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUACC C|N|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GG. .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-NC-NUG ACA-UC|--- ---------C ---CGAG--- -AA----UCC 1981 -UGU-G--(- GAAA-)-CAU -A-GGAG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGN------- ----AA---| CUC-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGAG AGA-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-U CUCAC-AAAG -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUN- AAUGC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUC-GA-UG- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.proteoly 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 328 c 463 g 312 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CU-A--A-UU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A GA-UA----G AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UU--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-AG-(GAA A)-CUC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCAU- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U GGG---AUGU G-AAA-AC-C CG-GGG-C(- UC-A)A-CUC -CG-G-ACC- 1321 -UGCA-UUCC A-AAC-UGGG U-GUCUA-GA GUA-----CA G-GA-GAGGA AAG-G|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-U----- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- --------AC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(ACGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---UAAG--- -AA----GUC 1981 -GGU-G--(- GAAA-)-CAC -U-GAUG--- UG-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----AA---| CUU-AG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAGAG AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CCCAU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGA- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-GC-C-A G-CG----CG A-AGGU-GGG AUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGN--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.limosum 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 374 a 313 c 441 g 300 t 2948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CA-U--U-UU ---AAU-(-- --------GC 541 AU-------- -)-GUU---G AA-AU----G AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -UU-GGGC|G UAAA-GCAU- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UC-C CG-GGG-C(- UC-A)A-CCC -CG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG U-AUCUA-GA GUA-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-CGG -GG-U----- ---------- 1681 -(UUC-AA)U ---------- ---------- ---------- --------AC -UUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-NNGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A......... .......... .(.......C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UC|--- ---------C ---CAAG--- -AA----UCC 1981 -UGU-G--(- GAAA-)-CAC -G-GGNG--- UG-------- --CCC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----NA---| CUU-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUCAU-AAAA -CC-A-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -NGA-AU)-G UCG-CGGUN- AAUGC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUC-GA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thpalmar 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 393 a 339 c 463 g 307 t 2874 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUAA UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-A C-CUUA---G -UGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-CU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAC---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UN-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-CGC- 1321 -UGCA-UUUG A-UAC-UGGA U-AUCUA-GA GUG-----UG G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-UGG -A-GGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-A CUCC--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUG-AGA--- --GGA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thpalma2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 393 a 339 c 463 g 307 t 2874 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------AG AAGAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUAA UUCU------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGC- CAA--CCU-A C-CUUA---G -UGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-CU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAC---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UN-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-CGC- 1321 -UGCA-UUUG A-UAC-UGGA U-AUCUA-GA GUG-----UG G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAU-)-GGA -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--GUU- 2281 AG--UUGC-U AC-CAU---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-A CUCC--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUG-AGA--- --GGA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thbutyr2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 336 c 462 g 306 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--------- ---------- ---------- ---------- ---------- ---------- 181 ---------- --------AG AAGAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUAA UUCU------ ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|------ AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---G -UGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-CU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAC---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-CGC- 1321 -UGCA-UUUG A-UAC-UGGA U-AUCUA-GA GUG-----UG G-GA-GAGGA CAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAU-)-GGA -G-GAA---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GAAAGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CAU---- ---------- ---------- ----(---UA ---AG---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----UUG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-A CUUC--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUAU---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.thbutyri 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 336 c 462 g 306 t 2882 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AAGAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUAA UU-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---G -UGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-CU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CAC---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGU|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-CGC- 1321 -UGCA-UUUG A-UAC-UGGA U-AUCUA-GA GUG-----UG G-GA-GAGGA CAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CG- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA A--CA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(UUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-UGG -A-GGAA--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GAAAGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-A CUUC--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.homoprop 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 395 a 323 c 447 g 296 t 2915 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......C-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGGAGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACAAA C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U UA-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-AU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGUAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GC-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -AG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -UUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-CAG -A-GGAA--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 --CA-CU-C- U-AGC-AA-G --CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAAA AGA-U-G-C- AA-ACC-C(G 2881 -UGA)GGGG- ---------- GA-GCUAA-A CUU--AAAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Ilb.delfld 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 402 a 330 c 461 g 304 t 2879 others ORIGIN 1 ~......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGAGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-ACAAA C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------G-U UA-U--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-AU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-UG --)GA-UUGU AAA--ACUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-UGGA U-AUCUA-GA GUG-----CG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-GGUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-CAG -A-GGAA--- G--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAA AGA-U-G-C- GA-UCC-C(G 2881 -UGA)GGGG- ---------- GA-GCCAA-A CUGC-AAAAC -CC-G-AUC- CCAGUUCGGA 2941 U-UGUAG-C- (U--AAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -AAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.novyi2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 398 a 332 c 459 g 311 t 2876 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-U-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-AU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-CUG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--NN NNUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.novyi3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 385 a 320 c 445 g 302 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .)..CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-U-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---ACG-(-- --------GC 541 AU-------- -)-CGU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-AU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-UAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- GUAA-)-CUG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinC 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 399 a 334 c 461 g 315 t 2867 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-G--- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---AUG-(-- --------GC 541 AU-------- -)-CAU---A GA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAUU- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UU-A)A-CCU -GG-G-CGC- 1321 -UGCA-UUUG A-AAC-UGGG C-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUCC)CCCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- UUAA-)-UCG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGG------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-A- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GCGGAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUC- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliC2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 320 c 443 g 299 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .)...CU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAACUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---AUG-(-- --------GC 541 AU-------- -)-CAU---A AA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGNU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-AAC-UGGG C-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UCC---CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- UUAA-)-UCG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliD2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 391 a 322 c 441 g 300 t 2922 others ORIGIN 1 .......... .......... .......... .......... ......(... A)UACCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAACUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-U-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---AUG-(-- --------GC 541 AU-------- -)-CAU---A AA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CCCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-AAC-UGGG C-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- UUAA-)-UCG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinD 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 404 a 333 c 455 g 313 t 2871 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-U-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UU ---AUG-(-- --------GC 541 AU-CAU---- -)ACAU---A AA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU N-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GU -G|-GG-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-UU-C CC-GGG-C(- UC-A)A-CCU -GG-G-AGC- 1321 -UGCA-UUUG A-AAC-UGGG C-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-NN-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G ---C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- --A----AUU 1981 -ACU-C--(- UUAA-)-UCG -A-GGAAG-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-UA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UA|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAACG AGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-A CUUG--AAAG -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-CGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GU-CG A-AGGU-GGG AUU-GG-UG- AUU-GGGG-U 3301 ----AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUU~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.grantii 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 384 a 328 c 461 g 319 t 2884 others ORIGIN 1 .......... .......... .......... .......... .....U(U-G A)U-CCU|-G 61 GCUCNG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--NU-G--- -----GA--- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ----GG---- ---|-AU--U AGCG-GCAG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-A C-CUCG---G -AGUG-G-GG 421 -GAU-AA-CC U--------- ------UC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AACAU-- ---------- -------A-U UU-U--U-U- ---UAC-(-- --------GC 541 AU-------- -)-GUG---- -A-GA----A AU--AUUA-- ---AAG---- ---------- 601 --(------- ---AUUU--- ---)------ ---------| ----AU--U- G--CUU---- 661 ----CGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GAGU- AUG-UAG-GC -G|-GA-UG- 1261 C-UU-AAG|U CAG---AUGU G-AAA-UC-C CC-GGG-C(- UC-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUG A-AAC-UGGG C-AUCUG-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG-G----- ---------- 1681 -(GUA-CC)A ---------- ---------- ---------- --------CC -CUCGG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UCUG--- --C----AUU 1981 -ACU-C--(- UUAA-)-UCG -A-GGAAA-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A CG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAGAG AGU-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CUUU--AAAG -CC-G-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AC-ACCC -GAA-G-CCU 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CA-GU-CG A-AGGU-GGG AUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliA3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 383 a 314 c 448 g 307 t 2924 others ORIGIN 1 .......... .......... .......... .......... ......(... .)UACCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CYA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GU........ .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliA4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 380 a 310 c 446 g 306 t 2934 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ......GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC CAUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)-GG GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GUCGU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-BC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AMA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G NC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUNC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAUGGA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliB2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 384 a 313 c 447 g 309 t 2923 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGGAU UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-U-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinF 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 383 a 314 c 447 g 307 t 2925 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GRAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- G......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulin6 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 398 a 327 c 465 g 318 t 2868 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU-CCAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--G- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG AGAGC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinA 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 327 c 464 g 317 t 2872 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAG A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCCC GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliA2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 379 a 311 c 436 g 301 t 2949 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAA-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAG A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinB 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 397 a 326 c 464 g 316 t 2873 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- G-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sporoge2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 328 c 464 g 315 t 2873 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sporogen 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 359 a 297 c 422 g 291 t 3007 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUAAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---N UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUN-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCN| NGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CN-GGG-C(- UU-A)A-CCU -GG-G-NNC- 1321 -UGCA-UUCC N-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGN- -NUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UNAA--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U NA)-CCA-G- -GNGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NNNAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-NUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCNAC-U- C)-GCCUNCA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACN--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.putrific 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 398 a 328 c 463 g 317 t 2870 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC BAAAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-ACA G-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CAGAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGC-C-A G-CG-GC-CG A-A-GU-GG- AUUAAG-UG- AUU-GGGG-U 3301 G--AAAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliB3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 376 a 307 c 439 g 299 t 2955 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... UGGA-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U AA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCANC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-ANA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGG -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAN-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botuliB4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 381 a 311 c 439 g 305 t 2940 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .AACC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U AA-G--A-UA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CNCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-NCAA CSCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAVC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUCC A-NAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 NC-AMA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- N-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GC -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGC-C-A G-CG-GN-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GKWA-CAAGG UAA....... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.novyi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 370 a 299 c 426 g 307 t 2974 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUAAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG GG-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U GA-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U UU-CU----U AU--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CN| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC NGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UC-C CN-GGG-C(- UU-A)A-CCU -GG-G-GNC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -GG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -CCCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-NAAACUC -NNN-GGNNU UG........ .......... 1861 .......... .......... ....NU-GGU -UUNAUU-NN -(NNNNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAG 1981 -CCU-A--(- GAGA-)-UAG -G-UNAAG-- C--------- ---NC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAAUA AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CC-U-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.oceanicm 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 364 a 299 c 420 g 290 t 3003 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -AAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------G-U AA-G--A-GU ---AUC-(-- --------GC 541 AU-------- -)-GGU---A CU-UU----U AC--CAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACN-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-NNA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-UU-CU 1021 --AG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CUA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UU- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-NGG-C(- NU-A)A-CUU -GG-G-UNC- 1321 -UGCA-UUCC N-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCNAGU- GUA-GCG(-G UNAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUNA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUAUC C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAA 1981 -CCU-A--(- GAGA-)-UAG -G-CGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAA-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-G--U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NNUAU-A-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGAC-A-GG -UA--CAGAG AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAG -CC-U-NUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CCU--- ---------- ---------- -----(---- -UUU------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGAAC-C-A G-CG-GU-CG A-AGGU-GGG AUU-AG-UG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pasteuri 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 391 a 320 c 450 g 317 t 2898 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NGUUUAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----AAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UUU-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U UA-A--A-GU ---UUC-(-- --------AC 541 AU-------- -)-GGA---G CU-UU----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UUG-GC -G|-GA-UA- 1261 C-UU-AAG|U GAG---AUGU G-AAA-GC-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUUC A-AAC-UGGG U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C U--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)G-CA- AUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-N -G-C-CN--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UAG 1981 -CGU-A--(- GAGA-)-UAC -G-UGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CNG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCN|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -NAGG-A-AG 2761 G-CG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUG--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAU-U- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.magnum 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 380 a 298 c 425 g 283 t 2990 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......GG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--U-UU ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AA-CU----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAA-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGUA- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UAGC 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CG G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAN-GG-A-C A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UAG 1981 -UGC-A--(- GAGA-)-UGC -A-UGAAG-- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ---------| CA--GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G--C -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -UA--CAGAG AGA-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CC-U-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUGA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --AAGG-A-G C-CA-GCGGA A-AGGU-GGG GUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(ACU-C)GC UG........ .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tyrobuty 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 311 c 447 g 301 t 2927 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NUUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAAC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGGGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AA----- ---------- -------A-G CC-A--A-GU ---UUC-(-- --------AC 541 AU-------- -)-GGA---A UU-UG----G AU--GAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UU--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AG- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UAA 1981 -CCU-A--(- GAGA-)-UAG -G-CGAA--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-NCG --CG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUCA--AAAA -CU-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CG-GC-CG A-AGGU-GGG GUU-AG-UN- AUN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tyrobu51 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 403 a 329 c 465 g 316 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~UUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAACC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AA----- ---------- -------A-G CC-A--A-GU ---UUC-(-- --------AC 541 AU-------- -)-GGA---A UU-UG----G AU--GAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UU--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CUACC-A A|-GAC-AG- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- UUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UAA 1981 -CCU-A--(- GAGA-)-UAG -G-CGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAC-GA-G A-CU-G-CCG --CG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAAAG AGA-A-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUCA--AAAA -CU-G-CUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CG-GC-CG A-AGGU-GGG GUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.kluyveri 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 385 a 320 c 444 g 257 t 2970 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUAAAAUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAG-C-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGAGG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AGA---- ---------- -------A-G GU-A--A-AA ---AUC-(-- --------GC 541 AU-------- -)-GAU---A AA-UG----C CU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-AG-GG-( AU-AAA-AG) -C-CCCCC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-A-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-NNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-AU-CC 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCG-G-AA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GUG-CAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-GA-C NN-GGN-C(- UU-A)A-CCC -GG-G-NAG- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCNN- -NUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -GG-GG---- -U-------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -CCCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A .......... .......... .......... .....CC--G 1861 C-N--CA-AG CAGCGG-AGC A-U-GU-GGN -NNAAU.... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UGA 1981 -CUC-G--(- UAAU-)-GGA -G-GAAG--- C--------- ---C------ --(UA----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUNC AA-------- CGAG-C--GC AACCC-CU-G |-UC--GUU- 2281 AG--UUGC-C AG-CAC---- ---------- ---------- ---G(---UA ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CC-C- U-AAC-GA-G A-CU-G-CCG --CG(-GC-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-AG -AA--CAGAG AGA-A-G-C- AA-UNC-C(G 2881 -CGA)GGAG- ---------- GA-GCAAA-U CUCA--AAAA -CU-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-C- C)-GCCUGCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -CAAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CG-GC-CG A-AGGU-GGG GUU-AG-UG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ljungda2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 380 a 300 c 421 g 284 t 2991 others ORIGIN 1 .......... .......... .......... ..NUAAAUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-A UC-A--G-UU ---UUC-(-- --------AC 541 AU-------- -)-GGA---A AU-UG----A UU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAY-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-G ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGY|G UAAA-GAGU- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCC -GG-N-NAC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CG G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------C ---CCUG--- -AA----UAU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CU-G |-UU--GUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --CG(-GU-U AA)-CNN-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAGAG AGA-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-C CUCA--AAAA -CU-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CG-GC-CG A-AGGU-GGG GUU-AG-UA- AUU-GGGG-U 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.ljungdah 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 383 a 297 c 423 g 285 t 2988 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUA AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--N AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAN-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-A UC-A--G-UU ---UUC-(-- --------AC 541 AU-------- -)-GGA---G AC-UN----A UU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-G ACG)--GUCC -NGN-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GAGU- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UN-N CN-GGG-C(- UU-A)A-CCC -NG-N-NAC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CG G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--GU-NA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA G--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(AAA- ---C)A-CA- AUAA-GUACU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UN-NNNNG.. .......... 1861 .......... .....G-AG. .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-UUG ACA-UA|--- ---------C ---CCUG--- -AA----UAU 1981 -CUU-A--(- GAGA-)-UAA -G-AGAAG-- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------N G-)------- GG-------- -----G---| NAN-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-CN-G |-UU--GUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-NCG --CG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C NNNAU-G-UC -CA--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGG-C-AG -UA--CAGAG AGA-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-C CUCA--AAAA -CU-G-CCC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUNCA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-NN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UAG-U-CU -AA-C----- ---------- ---------- -----(---- -UUAG----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-A-C G-CG-GC-CG A-AGGU-GGG GUU-AG-UA- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.6 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.scatolog 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 387 a 307 c 433 g 301 t 2948 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAUNG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--U-AU ---UUC-(-- --------AC 541 AU-------- -)-GAA---G UA-CU----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAN-- AUG---G-|G CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-NA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UNA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U CAG---AUGU G-AAA-AU-C CC-GAG-C(- UU-A)A-CUU -GG-G-AAC- 1321 -UGCA-UUUG A-AAC-UGGA U-AUCUA-GA GUG-----CG G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACC--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C U--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ANGGG-G -G-C-CN--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-G.. .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 AG-G-(UUAA -GU)-CCUGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CNUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAGAA AGA-C-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUUUU-AAAA -CU-C-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-NN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUU-AG-UA- AUN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tetanomo 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 373 a 315 c 427 g 283 t 2978 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... ..AAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GAA---A AA-CU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC---- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACCC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GG-CA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GCCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAC-)-GGA -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAGAG AGA-U-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tetanom2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 378 a 320 c 436 g 289 t 2953 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GAA---A AA-CU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC---- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACCC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GG-CA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GCCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAC-)-GGA -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAGAG AGA-U-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tetanom3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 355 a 306 c 414 g 287 t 3014 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-G--- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUC--- (--UU----- ---------- ---------- 241 --------CG -)GG-GAUAG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU-UC AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGUG-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-G--U-UU ---UCC-(-- --------GC 541 AU-------- -)-GAA---A AA-CU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----UG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-AG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CA 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C UUG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-U 901 GGG-AAUAUU G-CGCAAU-- GG-UG-(GAA N)-CCC-UGA CGCA|-GCNA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACCC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GG-CA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGG U-GCCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G--UGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------CCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CC.. .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAC-)-GGA -G-GACAG-- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CU-C GUG--CUACA AUGGU-G-AG -UA--CAGAG AGA-U-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUNCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GG-AC-C-A G-CG-GC-CG A-AGGU-GGG GUC-AA-UG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.spCM19 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 368 a 304 c 418 g 285 t 3001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 ..UCAC-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CA--A UCAC-AUGCA A-GUCUGAGC 121 G--A------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GAGUAGA-CC (--UU----- ---------- ---------- 241 -------UGG -)GG-GGUAC UC-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGA U-AUCUG-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAU-)-GGA -G-GAA---- ---------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-NAUGU-U 2221 GN-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-NCA-CA-C GUG--CUACA AUGGU-U-GG -UU--CAAAG AGA-G-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA UCC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pascui1 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 394 a 322 c 460 g 295 t 2905 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UGAA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GGGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GU- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-UC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G AG-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A A-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGA U-AUCUG-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAU-)-GGA -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAAAG AGA-G-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUC-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG G......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.malenomi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 372 a 309 c 420 g 274 t 3001 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNAAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AUAUC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAUUG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U UG-A--G-AG ---UUC-(-- --------GC 541 AU-------- -)-GAA---C AU-UC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----UGAG-- AUG---G-|A CCCAC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----NA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-NGA CGCA|-GCAA CGCC-GN-GU 961 G-G-GC-G-A C-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCCC| NGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CU-GAG-C(- UC-A)A-CUC -GG-G-NNC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUN-----NA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CN-GU--A 1621 AAC-U-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-GG---- ---------- 1681 -(-AA-CC)- ---------- ---------- ---------- -------UCC -CUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A C......... .......... .......... .......... 1861 .......... .......... .......... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGA-AC-UUG ACA-UC|--- ---------C ---CCUG--- -CA----UUA 1981 -CUC-G--(- UAAU-)-GGA -G-GNAA--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CNC --GG(-GU-U AA)-CCG-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -A-AAUC-AU CAU-G-CC-C CUUAU-G-UU -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAACG AGA-C-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-C CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN NUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUC-AA-UG- ANN-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.tetani 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 402 a 335 c 461 g 310 t 2868 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -ACAGUGGG- CAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U UA-A--G-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CU-UU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--U- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GC|----CC C--AUUA-G- CUA-U---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGU------- -----AG-GG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 C-UU-AAG|U GAG---AUGU G-AAA-UA-C CU-AAG-C(- UU-A)A-CUU -AG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGG C-AUCUA-GA GUA-----CA G-GA-GAGGG AAA-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAGGA UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUUCCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CAG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACCAUC|--- ---------C ---UUCU--- -GA----CCU 1981 -CUC-U--(- UAAC-)-UGA -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-GU-G AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-GCUC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAGAG AGA-C-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CC-G-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUU-AA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.cochlear 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 386 a 313 c 443 g 296 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNUUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U UA-G--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CU-UU----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--U- G--CUU---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CC C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-AA- CGA------- -----UG-GG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-G-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--ACCC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGU- GCG-UAG-GC -G|-GA-UG- 1261 C-UU-AAG|U GAG---AUGU G-AAA-UA-C CU-AGG-C(- UU-A)A-CUU -AG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGG C-AUCUA-GA GUA-----CA G-GA-GAGGG AAA-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUUCCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- ---------- 1681 -(GUC-CA)A ---------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-G.. .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-AC-NUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CUC-G--(- UAAC-)-UGA -G-GAAA--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-NCC --GG(-GU-G AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACN AUGGU-G-GG -UA--CAGAG AGA-A-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-U CUCA--AAAA -CC-C-AUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-AAA-(UC -AGA-AU)-G UUG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ANA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUU-AA-UG- ANU-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.7 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.subterm4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 314 c 438 g 304 t 2928 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAU CGAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U GU-U--U-UU ---AUC-(-- --------GC 541 AU-------- -)-GGU---A GA-AA----C AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-CCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUU-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GAG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C U--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC-U--(- UAAU-)-CGG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCA --CG(-GU-U AA)-CGU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AA -UA--CAAAU AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUAU--AAAA -UU-C-AUC- CCAGUUCGGA 2941 U-UGUAGUC- (UGAAAC-U- C)-GACUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GG-CG A-AGGU-GCG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGU.. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.esterthe 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 380 a 318 c 427 g 299 t 2952 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCGAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUC-A ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U GU-U--U-UG ---AUC-(-- --------GC 541 AU-------- -)-GAU---C UU-AA----C AU--CAAA-- ---GGAAUUU ---------- 601 --(------- ---UUCG--- ---)------ ---------| GAAUUU--C- A--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAAAGG) -C-CCACC-A A|-GNC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA---GA G-GG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCGG-UNC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAA 1981 -CUC-A--(- GAGA-)-UGA -GUGAAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-CA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAAAG AGA-U-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-A CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.esterth2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 381 a 318 c 428 g 298 t 2951 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU----- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GCGAU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUC-A ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U GU-U--U-UG ---AUC-(-- --------GC 541 AU-------- -)-GAU---C UU-AA----C AU--CAAA-- ---GGAAUUU ---------- 601 --(------- ---UUCG--- ---)------ ---------| GAAUUU--C- A--CUU---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAAAGG) -C-CCACC-A A|-GNC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CC---(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GUUC| UGUC-UU-CU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA---GA G-GG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(GUC-GA)A ---------- ---------- ---------- ---------C -CUCGG-UNC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UAA 1981 -CUC-A--(- GAGA-)-UGA -GUGAAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-CA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -UA--CAAAG AGA-U-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCCAA-A CUCA--AAAA -CU-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG...... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.argenti2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 405 a 329 c 462 g 308 t 2872 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCU---A -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUAA-AAAA -CC-A-A-C- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG--C-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinG 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 406 a 330 c 462 g 308 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A--UC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAGUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC-UUC AU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUAA-AAAA -CC-A-A-C- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.argentin 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 388 a 316 c 443 g 291 t 2938 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NAAAUUG AGAGUU(U-G A)N-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGC-U-CC (--UU----- ---------- ---------- 241 --------CG -)GG-A-GUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU.... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U NA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUAA-AAAA -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGN-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- ACU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.subterm2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 406 a 329 c 462 g 312 t 2867 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGCUU-CC (--UU----- ---------- ---------- 241 --------CG -)GA-AGGAG U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- -------GG- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U AUGU---AAC -AC-GUGGG- UAA--CCU-G CCUUCA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCA --CG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -C-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUAA-AAAA -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sp1975 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 399 a 326 c 460 g 306 t 2885 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-N 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-C- (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AA----- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAA---- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-S CUUAA-AAAA -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAU C(GGA-A)GG UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.subtermi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 375 a 299 c 432 g 287 t 2983 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC .......... ......GC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAG. 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .........A -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U AU-G--A-AG ---GUC-(-- --------GC 541 AU-------- -)-GAC---U UU-UA----U AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-AU-G-A A-GAA--G-G CC(--UU-AG --)GG-UUGU AAA--GUUC| UGUC-AU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AU G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GA-CA- 1261 U-UU-AAG|U CAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUG A-AAC-UGGG U-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CNUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-G----- -U-------- 1681 -(AUC-GA)C C--------- ---------- ---------- --------CC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-NAAACUC -AAA-GGAAU UG-NNGGG-G -N-N-CC--G 1861 C-N--NN-NG NNNNGG-AGC A-U-GU-GGU -UU....... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GG-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-U-GG -UA--CAACA AGA-U-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUAA-AAAA -CC-A-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GC-UGG- UA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG AUU-AG-UG- ANN-NGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.8 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.colgenvo 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 327 c 465 g 315 t 2877 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGU---A -AGUG-G-GG 421 -GAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--G UAAUACC-GC 481 AU-AAG---- ---------- -------A-U AU-U--U-UG ---AUC-(-- --------GC 541 AU-------- -)-GGU---C GA-AA----U AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUU---- 661 ----ACAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-AA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CGCAAU-- GG-GG-(GAA A)-CCC-UGA CGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-AU 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GCAU- GCG-UAG-GC -G|-GA-UG- 1261 U-UU-AAG|U GAU---GUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UGUC A-AAC-UGGA C-AUCUA-GA GUG-----CA G-GA-GAGGA GAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-CGG -GG------- ---------- 1681 -(UCG-AA)- ---------- ---------- ---------- ---------C -CUCGG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- UUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCG--ACG A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG -GA--CAAAA AGA-U-G-C- UA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CU-CA-AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-C-A G-CG-GU-CG A-AGGU-GGG GUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGN--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sardinie 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 399 a 330 c 457 g 314 t 2876 others ORIGIN 1 .......... .......... .......... .........G AGA-UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|--A-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -NA----UUA 1981 -GUC-C-G(- UANU-)-GGA -U-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA--GA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-A-GG --A--CAAAA AGA-U-G-C- UA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CU-CA-AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-C-A G-CG-GU-CG A-AGGU-GGG GUU-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAACC-GUAU C(GGA-A)GG UGCGGN--UG GAUCACCUCC 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 373 a 302 c 411 g 294 t 2996 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---U -AGNG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-C UC-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-UG----A GC--CAAA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-AA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGA U-GUCUG-GA GUG-----CA G-GA-GAGGA AGG-C|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -GA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-A CU-CA-AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -NUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAA..... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebut12 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 151 a 126 c 151 g 126 t 3822 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -GA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-A CU-CA-AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty9 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 368 a 300 c 410 g 297 t 3001 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-AC (--UU----- ---------- ---------- 241 --------CG -)GU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-CC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---U -AGUG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-C UC-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-UG----A GC--CAAA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-AU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGA U-GUCUG-GA GUG-----CA G-GA-GAGGA AGG-C|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -GA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-A CU-CA-AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-CCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -UUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAC-C-A G-CG-GU-CG A-AGGU-GGG GUU-GA-UA- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 373 a 308 c 427 g 299 t 2969 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UNNC-GGC-G -UGC...... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGNG- UAA--CCU-A C-CUCA---U -AGUG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-C UC-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-UG----A GC--CAAA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-AU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|G-A-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGA U-GUCUG-GA GUG-----CA G-GA-GAGGA AGG-C|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-AU--CUU- 2281 AG--UUGC-C AA-NA----- ---------- ---------- ---U(---UC ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -GA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- AA-GCAAA-A CU-CA-AAAC -CC-C-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GNA-G-UCG 3121 G-UGG-G-GU -AA-CC---- ---------- ---------- -----(---- UUUUU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CG A-AGGU-GGG GCC-AA-UG- AUU-GGGG-U 3301 G---AAGUA- GUA....... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 386 a 313 c 435 g 312 t 2930 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--GG----G ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-AC (--UU----- ---------- ---------- 241 --------CG -)GU-U---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- --C|-CC--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-A C-CUCA---U -AGUG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-C UC-G--A-GA ---AUC-(-- --------GC 541 AU-------- -)-GAU---U CU-UG----A GC--CAAA-- ---GGA---- ---------- 601 --(------- ---UUUA--- ---)------ ---------| ----UU--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-UU- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UCGU AAA--ACUC| UGUC-UU-AU 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCA-U-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|G-A-UA- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UC-C CC-GGG-C(- UU-A)A-CUU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGA U-GUCUG-GA GUG-----CA G-GA-GAGGA AGG-C|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CCUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-GU---- ---------- 1681 -(AUC-GA)C ---------- ---------- ---------- -------UCC -UUCUG-UGC 1741 CG--CA---- --GU-(UAA- ---C)A-CA- AUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -GUC-C-G(- UAAU-)-GGA -U-GAAG--- UC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UC--AUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGU-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-GG -GA--CAAAA AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-A CU-CA-AAAC -CC-U-AUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -NAA-G-UCA 3121 G-UGA-G-GU MAA-CC---- ---------- ---------- -----(---- UUUAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CC-GC-CU A-AGGU-GGG AUA-GA-UG- AUU-GGGG-U 3301 G---AAGUA. .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.9 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.cadavers 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 369 a 298 c 432 g 278 t 2999 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -NAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGCA-CC (--UU----- ---------- ---------- 241 --------CG -)GG-UGUGA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUUA---C -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AUU---- ---------- -------A-U GA-U--U-UU ---UCU-(-- --------GC 541 AU-------- -)-GGG---A AA-GU----C AU--GAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUG---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAG-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GU -G|-GA-AU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-AAC- 1321 -UGCA-UUCC A-AAC-UGGA A-UUCUA-GA GUG-----CA G-GA-GAGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCG.. ...UUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CA- U-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(UCG-AU)- ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GU-(AAA- ---C)A-CA- AUAA-GUACC N|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A U......... .......... .......... .......... 1861 .......... .......... .......... .......... .(.....A-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UG|--- ---------U ---CCUG--- -AA----UUA 1981 -CCU-G--(- UAAU-)-AAG -G-GAAG--- CU-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AG---| CAG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UA--GUU- 2281 AG--UUGC-U AA-CA----- ---------- ---------- ---G(---UA ---AGA--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-UA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C NNNAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -AA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCAU-AAAA -CU-C-GUC- CCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-CG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CU A-AGGU-AGG GUC-AG-CG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.fallax 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 383 a 319 c 438 g 302 t 2934 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ NNNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GAGUUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAACU A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGNG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U CA-U--U-UU ---AGC-(-- --------GC 541 AU-------- -)-GCU---C AA-AU----G AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCNC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CN(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UU- 1261 C-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CUU -GG-G-UCC- 1321 -UGCA-UUUC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC C|N|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UNAAU.... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- -C-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -CAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CC-A-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCU 3121 G-UGA-G-CU -AA-CCU--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- AGGGGG-C-A A-CG-GC-CG A-AGGU-AGG GUC-AG-CG- ANN-GGG... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.intestin 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 367 a 310 c 421 g 286 t 2992 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... .CAC-AUGCA A-GUC-GAGC 121 G--AG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAUU-GC (--UU----- ---------- ---------- 241 --------CG -)GU-AAUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUGA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------G-U CA-A--A-UG ---AAG-(-- --------GC 541 AU-------- -)-CUU---C AA-AU----G AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UCAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C CU-GGG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG U-GUCUA-GA GUG-----UU G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACA--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-GU---- ---------- 1681 -(AUC-NA)C ---------- ---------- ---------- -------UCC -CCCUG-UGC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- AUAA-GUACC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UU-------- CU-CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GGGAG----- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-C C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAAAG AGA-C-G-C- AA-AGC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUUAU-AAAA -CU-C-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGCA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UAG-C-CU -AA-CC---- ---------- ---------- -----(---- -UUUA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-G.. .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.algidcrn 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 345 c 463 g 305 t 2871 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AA-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --UUAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GAUAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-CC 481 AU-AAC---- ---------- -------A-U AG-C--A-UU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A AA-GU----U AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-CA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GC-(GAA A)-GCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UCGU AAA--GCUC| UGUC-UU-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC --|-GA-UA- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCC -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG U-AUCUA-GA GUG-----UG G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACC--AU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAG-GC- -GA(CUUU-C UGGA)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -GG-AU---- ---------- 1681 -(-AC-CA)- ---------- ---------- ---------- -------AUC -CUCCG-UGC 1741 CG--UC---- --GU-(UAA- ---C)A-CA- CUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCU---G(- UAAUU)--AG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAACG AGA-C-U-G- CAAUAC-C(G 2881 -CGA)GGUG- ---------- GA-AGCAA-A ACUCAAAAAA -CU-C-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-CG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UGC-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-GC-CG A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC -GCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sfb3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 432 a 279 c 436 g 330 t 2899 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--GA-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UAUAUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUAUA UAA------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-A U-CCUA---U -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- U(-GAAA-)G -UUGG-A--U UAAUACC-GC 481 AU-AUA---- ---------- -------G-C UA-U--A-UA ---GUU-(-- --------GC 541 AU-------- -)-GAU---U AU-GU----A GU--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----UAGG-- AGG---A-|G UCUGC----- -GG|----CA C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UG-UG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U UAU---AUGU U-AAA-UA-U AU-AGG-C(- UU-A)A-CCU -GU-A-GAA- 1321 -AGCA-UAUA A-AAC-UGUU U-AACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAGA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-GU---- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- -------ACA -AUUCG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-AGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CUUG--- -AA----UUA 1981 -CCU-U-G(- UAAU-)-GAG -G-GAAG--- C--------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- -----G---| CAA-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CA-G-CCU --AG(-GU-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAGAG AGA-A-G-C- AA-GCU-A(G 2881 -UGA)UAGU- ---------- GA-GCAAA-A CUUAU-AAAA -CU-C-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGUA -UGAAGA-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-A-CCU 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -AUAUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CA-GU-CU A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UA........ .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.SFB1 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 418 a 270 c 421 g 319 t 2948 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... ......GC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--GA-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UAUAUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-UUAUA UAG------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-A U-CCUA---U -ACUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- U(-GAAA-)G -UUGG-A--U UAAUACC-GC 481 AU-AUA---- ---------- -------G-C UA-U--A-UA ---GUU-(-- --------GC 541 AU-------- -)-GAU---U AU-GU----A GU--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--GUA---- 661 ----UAGG-- AGG---A-|G UCUGC----- -GG|----CA C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAA-GG) -C-UUACC-U A|-GGC-GA- CGA------- -----UG-UG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GU-UA- 1261 A-AC-AAG|U UAU---AUGU U-AAA-UA-U AU-AGG-C(- UU-A)A-CCU -GU-A-GAA- 1321 -AGCA-UAUA A-AAC-UGUU U-AACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAGA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-GU---- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- -------ACA -AUUCG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-AGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CUUG--- -AA----UUA 1981 -CCU-U-G(- UAAU-)-GAG -G-GAAG--- C--------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- -----G---| CAA-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CC-U- U-AGC-GA-G A-CA-G-CCU --AG(-GU-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAGAG AGA-A-G-C- AA-GCU-A(G 2881 -UGA)UAGU- ---------- GA-GCAAA-A CUUAU-AAAA -CU-C-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGUA -UGAAGA-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-A-CCU 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -AUAUA---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CA-GU-CU A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sfbrat 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 423 a 278 c 426 g 314 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUU-GAGC 121 G--GA-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------G UAAAUGG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUAUG AAC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--U AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UCU-G U-CCUA---U -AUUG-G-GG 421 -GAU-AG-CC C--------- ------GA-- U(-GAAA-)G -UUGG-A--U UAAUACC-GC 481 AU-ACA---- ---------- -------G-C UA-U--A-UA ---GUU-(-- --------GC 541 AU-------- -)-GAU---U AU-AU----A GU--GAAA-- ---GA----- ---------- 601 --(------- ---UUUA--- ---)------ ---------| -----U--U- G--AUA---- 661 ----UAGG-- AGG---A-|G UCUGC----- -GG|----CA C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAG-AG) -C-UUACC-U A|-GGC-GA- CGA------- -----UG-UG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG---UUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GU-UA- 1261 A-AU-AAG|U UAU---AUGU U-AAA-UA-U AU-AGG-C(- UU-A)A-CCU -GU-A-GAA- 1321 -AGCA-UAUA A-AAC-UGUU U-AACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAGA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(ACUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-GU---- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- -------ACA -AUCCG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-AGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C --CCUUG--- -AA----UUA 1981 CCCU-U-G(- UAAU-)-GAG -G-GAAG--- C--------- ---UC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GA-------- -----G---| CAA-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-U AA-CAG---- ---------- ---------- ---G(---UU ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CA-G-CCU --AG(-GU-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAAAG AGA-A-G-C- AA-GCU-A(G 2881 -CGA)UAGU- ---------- GA-GCAAA-A CUUAU-AAAA -CU-C-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGUA -UGAAGA-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-A-CCU 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CA-GU-CU A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS str.sfb2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 421 a 274 c 437 g 309 t 2935 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... A-GUU-GAGC 121 G--GA-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------A UAUGGAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUUA UAU------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-UU--U AGCA-GCGA- 361 -A-CG-GG-U GAGU---AAC -AC-GUAGA- UAA--UUU-G U-CCUA---U -AUUG-G-GG 421 -GAU-AG-GC C--------- ------GA-- U(-GAAA-)A -UUGG-A--U UAAUACC-GC 481 AU-ACA---- ---------- -------G-C UA-U--U-UA ---ACC-(-- --------GC 541 AU-------- -)-GGG---G AG-AU----A GU--GAAA-- ---GGG---- ---------- 601 --(------- ---GAGA--- ---)------ ---------| ----CU--U- G--AUA---- 661 ----UAGG-- AGG---A-|G UCUGC----- -GG|----CA C--AUUA-G- CUA-G---UA 721 GG-UG-AG-( GU-AAG-AG) -C-UCACC-U A|-GGC-GA- CGA------- -----UG-UG 781 U-AG-C-CG| -G-UCU--(G -AGA)-GGAU ----GA-A-- CGG-C|C-AC -AAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A A-GAA--G-G UU(--UU-CG --)GA-UUGU AAA--GCUC| UGUU-AG-CA 1021 --GG-GAA-- GA-------- ---------( -----GGAAG ---------) ---------- 1081 ---------- ---------- --GA-CGGU- A-CCU-G-CA G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU UC-GGAAUAA -CU-GGGC|G UAAA-GGAU- GCG-UAG-GC -G|-GU-UG- 1261 A-GU-AAG|U UAU---GUGU U-AAA-UA-U AU-AGG-C(- UU-A)A-CCU -GU-A-GAA- 1321 -AGCA-CAUA A-AAC-UGUU U-AACUA-GA GUG-----CA G-GA-GAGGU AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUACUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAGA-GC- AU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAU- G-CU-GU--A 1621 AAC-G-AUGG G--UA-CU-- -------A|G -GU-GU-GGG -UU-GU---- ---------- 1681 -(GAA-UA)- ---------- ---------- ---------- -------ACA -AUCCG-UGC 1741 CG--UC---- --GC-(AAA- ---C)G-CA- AUAA-GUACC C|C|G-CCU- G-AGGAGUAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAA-AC-UUG ACA-UA|--- ---------C ---CUUG--- -AA----UUA 1981 -CCU-U-G(- UAAU-)-GAG -G-GAAG--- C--------- ---CC----- --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)------- GG-------- -----G---| CAA-GG-AUA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UU--GUU- 2281 AA--UUGC-U AA-CAG---- ---------- ---------- ---G(---UA ---GAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|A 2701 G-CA-CU-U- U-AGC-GA-G A-CA-G-CCU --AG(-GU-U AA)-CUA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAC-G-UU -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-G-AG -AA--CAAAG AGA-A-G-C- AA-ACU-A(G 2881 -CGA)UAGU- ---------- GA-GCAAA-A CUUAU-AAAA -CU-C-AUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGAAAC-U- C)-GCCUGUA -UGAAGA-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-CCU 3121 G-UGG-G-CU -AA-CC---- ---------- ---------- -----(---- -GAAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CA-GU-CU A-AGGU-GGG GUC-AG-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.A 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Src.vntri2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 401 a 319 c 435 g 303 t 2918 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -ACAC-C-CC 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-U--U-GA ---AAG-(-- --------GC 541 AU-------- -)-CUU---U UA-AC----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC --|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-AGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-C----- ---------- 1681 -(CCC-AA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UG|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA---G(- UAAUG)--UG -G-GAAG--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGG-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 C-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-A CUCA--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UAA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-AGGU-NGG GUC-AG-CG- AUU-GGGG-U 3301 N---AAGUC- GUAA-CAAGG UAGCN-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Src.vntric 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 350 a 288 c 378 g 285 t 3075 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAAGU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-GCUUU ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGA- CAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GU 481 AUUAAU---- ---------- -------A-U UG-G--UGGA ---AAG-(-- --------GC 541 AU-------- -)-CUC---U UA-CC----- AU-CCAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--UUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUCAG- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GNCCGA- CGA------- -----UGCCG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGA-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AA- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CCCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( .......... .........) .......... |......... 1201 .....GUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 U-UU-AAG|U GUG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-AGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UAC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AUC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-C----- ---------- 1681 -(CCC-AA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G C..)...... ........UC -AAA-GGAA. .......... .G-C-CC--G 1861 C-A--CU-AG CAGCGG-AGC A-U-GU-GGU UUUACUCCCG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UG|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA---G(- UAAUG)--UG -G-GAAA--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |UU-C(-GUG A)-GAUGU-U 2221 GG-N-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- --UU(---UA ---CGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 C-CA-CU-C- U-AGC-GA-G A-CU-G-GCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGCC- 2821 U-ACA-CA-C GUG--CUACA GUGGC-N-AG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)AGUG- ---------- GA-GCAAA-A CCCA--AAAA -CC-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU. .........C UUGUA----C 3061 ACACC..... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Src.maxima 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 385 a 301 c 414 g 297 t 2979 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAAUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGUUU U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UA-U--U-GA ---AAG-(-- --------GC 541 AU-------- -)-CUU---U UA-AU----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GAG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG U-AUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-C----- ---------- 1681 -(CCC-AA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UG|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA---G(- UAAUG)--UG -G-GAAG--- UU-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-GA-ACA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGG-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 C-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-UAC-U(G 2881 -UGA)GGUN- ---------- GA-GCAAA-A CUCA--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCN-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGA...... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.tarant 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 378 a 310 c 434 g 289 t 2965 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~NUAAUUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-A--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --GAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U CA-U--U-GA ---GUG-(-- --------GC 541 AU-------- -)-CAU---U UA-AU----G AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- N-GA-NGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UA- 1261 A-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGU U-AUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-C----- ---------- 1681 -(CCC-NA)- ---------- ---------- ---------- --------GC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ANGGG-G -A-C-CN--G 1861 C-A--CA-AG C......... .......... .......... .(...NAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-NC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUN 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- -C-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GN-G-(UUAA -GU)-CCCGC AA-------- NGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-NN-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CNUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-AGGU-AGG GUC-AG-CG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.perfri50 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 400 a 333 c 462 g 318 t 2863 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~...AAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 GA-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-U-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------G-U UG-A--A-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C AU-UC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UG- 1261 A-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGU U-AUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(-UC-AA)- ---------- ---------- ---------- -------CAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAAU-- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUA--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-A-GU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.perfring 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 386 a 311 c 438 g 302 t 2939 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUAAAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-NC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-U-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------G-U UG-A--A-AG ---AUG-(-- --------GC 541 AU-------- -)-CAU---C AU-UC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCAC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-GG-( GU-AAC-GG) -C-CUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -NAA-C-UNN -(NNCG)--G GAG-GC-AG- C-A---GU-N 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAA-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CNCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -N|-GA-UG- 1261 A-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-NNC- 1321 -UGCA-UUCC A-AAC-UGGU U-AUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCCG-UGC 1741 CG--CN---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AANNAA-C G)--CGAAGA 1921 A-CCUUA-CC UAC-AC-UUG ACA-UC|--- ---------C ---CUUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAAN-- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAA-GG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-G |-UC--GUU- 2281 AG--UUAC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-GA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C NUUAU-G-UG -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUA--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-UC UUGUA----C 3061 ACACCGCNC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -GAA-G-UCC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-GC-CG A-AGGU-AGG GUC-AG-CG- ANU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.B 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.budayi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 395 a 336 c 463 g 314 t 2868 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNA|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAA-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-GU---- ---------- 1681 -(AUC-AA)C ---------- ---------- ---------- -------UCC -UUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -AUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.nitrit 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 393 a 336 c 462 g 315 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.barati3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 391 a 337 c 464 g 316 t 2868 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- UA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.barati2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 393 a 336 c 464 g 315 t 2868 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------C ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AG-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-A(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- GA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.absonum 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 375 a 308 c 427 g 302 t 2964 others ORIGIN 1 .......... .......... .......... ...NNNNNNG AGAG-U(U-U A)U-CCU|-G 61 GCUCAA-GGA -CGAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|--A-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- --------GC 1501 ACU--GU-AA GUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-GA)U ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- ---N-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AG- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-GG UAG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- ---------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----A---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AAU-GA-G A-CU-G-CCU --GG(-GU-- AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA....- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.mulfor 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 334 c 459 g 317 t 2870 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-NNU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAGUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAACG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUUG---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-U--A-CC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G GA-AC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UC-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAAUC)-GGG -G-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-C-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUN|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Eub.monili 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 378 a 311 c 437 g 306 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NUUUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AAAUUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAAUG G--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUUG---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U UG-U--A-CU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A GA-AY----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----CAAG-- AUG---G-|A CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAY-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 C-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-AUCUA-GA GUG-----CA G-GA-GGGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-U----- ---------- 1681 -(UUC-AA)C ---------- ---------- ---------- --------AC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACNNG-G -N-C-CN--G 1861 C-A--CA-AG UAGCGN-NGC A-U-GU-GG. .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---UCUG--- -CA----UUA 1981 -CCC-U--(- UAYC-)-GGG -N-AAGU--- U--------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-AA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C NNNAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CN UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGGGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG.. 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.quinii 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 391 a 328 c 452 g 306 t 2899 others ORIGIN 1 .......... .......... .......... .......... .....U(U-U A)U-CCU|-G 61 ACUCA--GAC -GAAC-GCU- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AGAUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AUGAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CU--- AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-A-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-UC 481 AU-AAC---- ---------- -------A-U UG-C--A-GU ----UU-(-- --------GC 541 AU-------- -)-GGG---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-GA)U ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --G--(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAA---- GU-------- ---CU----- --(UC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- --)------- AG-------- ----AC---| AGG-GA-AGA |---C|A--G 2161 GU-UG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGG-U-CU -AA-CC---- ---------- ---------- -----(---- -UGAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CC-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUA- G(AGA-A)CC UUG....... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.celatum 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 350 a 297 c 404 g 272 t 3053 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GA----- UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUCAA-- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCCGC---- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- NN-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|--A-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA GAA-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CAC UGG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-----U--A 1621 AAC-G-AUGA A--UA-CUAU GAGCACUA|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC-G--(- UAAC-)-UGG -G-GAAG--- UC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-A-G-C- AA-GAC-C(G 2881 -CGA)GGUG- ---------- GA-GCAAA-A CUCA--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 NC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UGC 3121 G-UG...... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.carnis 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 376 a 321 c 441 g 294 t 2944 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNNUAGGUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- GGA-GUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AACCN AA-------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-CN--N AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUG---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U UG-C--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G CA-GU----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-CG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-NNC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CN---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU.... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---CU----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAAAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- A......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.septicum 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 393 a 341 c 465 g 308 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-GGGA ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AA|ACC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUG---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------CC-- C(-GAAA-)G -GGAG-A--U UAAUACC-GC 481 AU-AAC---- ---------- -------A-U UG-C--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-GGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.chauvoei 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 395 a 338 c 462 g 312 t 2869 others ORIGIN 1 .......... .......... .......... .......... AGAGUU(U-G A)U-CAU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AG-GAGA ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -AA|ACC--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUG---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAU---- ---------- -------A-U UG-C--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GGA---G CA-GU----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UU(--UU-CG --)GA-UCGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 GAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-CU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA GAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUCUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGG A--UA-CU-- -------A|G -GU-GU-GGG -AG-G----- -U-------- 1681 -(AUC-AA)C U--------- ---------- ---------- --------CC -UUCCG-UGC 1741 CG--CC---- --GU-(UAA- ---C)A-CA- UUAA-GUAUC C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---UC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GA-------- ----GA---| CAG-GA-UGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-AG -UA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CU-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pputrifi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 395 a 331 c 464 g 314 t 2872 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-CG ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|--A-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA A-AUCUA-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA-U-G(- UAAU-)-GUG -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGA-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-A-A G-CC-AC-CU A-AGGA-UGG GUC-AG-CG- AUU-GGGG-U 3301 ----AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGN--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.pputrif2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 389 a 319 c 452 g 305 t 2911 others ORIGIN 1 .......... .......... .......... .......... ......(..G A)U-CCU|-G 61 GCUCAG-GAU -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G C-(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA A-AUCUA-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA-U-G(- UAAU-)-GUG ---GAAG--- NN-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----AA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CC- --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGA-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-A-A G-CC-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAUCC-G... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.barati 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 374 a 312 c 446 g 297 t 2947 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~NNUUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AACGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GC ---UUC-(-- --------GC 541 AU-------- -)-GAA---G UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GYAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACN-A A|-GGC-GA- CGA------- -----UG-CG 781 N-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCN -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-NA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UC-A)A-CCU -GG-G-NNC- 1321 -UGCA-UUCC A-AAC-UGGA A-AUCUA-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CN---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG UAGCGG-AGC A-U-G..... .......... .(....AA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCA-U-G(- UAAU-)-GUG -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UN -N-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAACG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UAC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUU-AA-UG- ANU-GG.... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.celluvo2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 399 a 327 c 459 g 321 t 2870 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~.......G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAG---C (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAA---- ---------- -------A-U GC-A--A-UU ---CUC-(-- --------GC 541 AU-------- -)-GAG---A GA-UG----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UU-AG-( GU-AAC-GA) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUG-AU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GAG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GCUAAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CCC--- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-ACG A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC-G--(- UAAC-)-UGG -G-GAAG--- UU-------- -ACCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- AGGU------ ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUC A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -C-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAACG AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUAU--AAAA -CU-C-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGC--GUA- G(AGA-A)CC UGCGGU--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.celluvor 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 328 c 462 g 320 t 2870 others ORIGIN 1 .......... .......... .......... .......... ....UU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---AAGC-CC (--UU----- ---------- ---------- 241 --------CG -)GG-GUGG- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-G-GG 421 -GAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U GC-A--A-UU ---CUC-(-- --------GC 541 AU-------- -)-GAG---A GA-UG----U AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UUUG-AU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AA G-AA--CAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGAU- GUG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GAG---AUGU G-AAA-UA-C CC-GAG-C(- UC-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUUC A-AAC-UGGA A-GUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUGUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CA- U-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC-G--(- UAAC-)-UGG -G-GAAG--- UU-------- -ACCU----- --(CU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------UU G-)------- AGGU------ ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-AA-G A-CU-G-CCU --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-G-AG -UA--CAACG AGA-C-G-C- AA-GAC-C(G 2881 -UGA)GGUG- ---------- GA-GCAAA-U CUAU--AAAA -CU-C-GUC- CCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGU-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-CGG- CA-AC-ACCC -GAA-G-UCC 3121 G-UGA-G-GU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGC-C-A G-CG-GC-CG A-AGGU-GGG GUC-GA-UG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UUUC|U.... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.aurantib 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 367 a 315 c 436 g 298 t 2960 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAACCGC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUA---U -AGAG-A-GG 421 -AAU-AG-CC A--------- ------UC-- C(-GAAA-)G -GAUG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U UG-U--A-N- ---UUC-(-- --------GC 541 AU-------- -)-GGA---G CA-AC----A AU--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--A- ---CUA---- 661 ----UAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCANC-N A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G CC(--UU-CG --)GG-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-AC--U- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGG A-GUCUA-GA GUG-----CA G-GA-GGGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC AUG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG AGA-U-G-C- UA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-NCA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGA-U-CU -AA-CCUC-- ---------- ---------- -----(---- -GCAU----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------G AGGAGG.... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.longspor 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 384 a 324 c 452 g 304 t 2912 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUG---U -AGAG-A-GG 421 -GAU-AG-CC A--------- ------UU-- C(-GAAA-)G -GAUG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- A--CUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|--A-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA A-GUCUA-GA GUA-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---C------ --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGA-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-GAA G-CC-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.chartata 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 388 a 335 c 461 g 313 t 2879 others ORIGIN 1 .......... .......... .......... .......... ..AGUU(U-G A)U-CCU|-G 61 GCUCAG-GNC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U ANCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUUG---U -AGAG-A-GG 421 -GAU-AN-CC A--------- ------UU-- C(-GAAA-)G -GAUG-A--U UAAUACC-UC 481 AU-AAU---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-AC----A AC--CAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- A--CUA---- 661 ----CAAG-- AUG---G-|G CCCGC----- -GG|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GC -G|-GA-UU- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA A-GUCUA-GA GUA-----CA G-GA-GGGGA AAG-C|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AACA-CCGG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACG-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -CA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUUC--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGC-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUG 3121 G-UGA-U-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGGAG-G-A G-CC-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUC. 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.A.2.C 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulin3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 400 a 325 c 460 g 323 t 2868 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-UC (--UU----- ---------- ---------- 241 --------CG G)GA-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CG-GC----A AU--AAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-CU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GGC -UUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulinE 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 314 c 444 g 314 t 2914 others ORIGIN 1 .......... .......... .......... .......... ......(... A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CG-GC----A AU--AAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-CU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GGC -UUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---RC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAGGU U......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulin4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 400 a 324 c 457 g 324 t 2871 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CG-GC----A AU--AAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-CU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GGC -UUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---GC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GC-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.botulin5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 402 a 323 c 458 g 323 t 2870 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-CU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAACU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- CAA--CCU-G C-CUCA---U -AGAG-A-GG 421 -GAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-UC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CG-GCG---A AU--AAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|G CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UA-AG-( GU-AAU-GG) -C-UUACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-UG 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCC-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GA-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|GGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UU-AGGAAG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -AG-CU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GGC -UUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- UC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GA---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCG --UG(-GU-U AA)-CGC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAAAG AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-A CUAU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CCC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GGGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.puneciu2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 383 a 305 c 442 g 304 t 2942 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... ..GA-GA--U UUGA-UUGCA A-GUC-GAGC 121 G---U-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU--C (--UU----- ---------- ---------- 241 --------CG -)GG-AAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(NAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCNNA-CC UAG-AC-NUG ACA-UC|--- ---------U ---CCUG--- -AA----NUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---CC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- ----CG--C| AAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GNG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGN-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGN-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AG...).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.punecium 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 394 a 323 c 458 g 313 t 2888 others ORIGIN 1 .......... .......... .......... .......... ......(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-CUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---CC----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- AA-UAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-NG- AUU-GGGG-U 3301 G---AAGUC- GNAA-CAAGG UAGCC-GNAG G(AGA-A)CC UGCGGC--UG GAUCAC.... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.favospor 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 380 a 311 c 437 g 301 t 2947 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 ........CG -)GG-AAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-C-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---CU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCG-C--UG GAUCACCUCC 3361 CU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.corinfrm 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 396 a 324 c 460 g 320 t 2876 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---UUC-(-- --------GC 541 AU-------- -)-GAA---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- UUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--ACUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-C-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---CU----- --(-U----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GG-------- -----G---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-CU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAA AGA-U-G-C- AA-UAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC U-UGCC--UG GCUGGAUCAU 3361 C...|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.butyric4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 397 a 328 c 462 g 319 t 2870 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-G|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-CCU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.butyric3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 397 a 328 c 462 g 319 t 2870 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-G|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-CCU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.kainanto 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 375 a 305 c 429 g 303 t 2964 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~NNNNNNG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCAUA-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-G|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |NU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-CCU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-NGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- NA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-NU -AA-CC---- ---------- ---------- -----(---- -G.......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.butyricm 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 386 a 314 c 435 g 320 t 2921 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~UUUUAUUG AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 NAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGC- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C CC-GGG-C(- UU-A)A-CCU -GG-G-NCC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-G|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-UCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CN- N-NAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CA---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG........ .........G 1861 C-A--CA-AG .......... ........GU -UUAAUU-CG .(..GCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-NAAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CNC --GG(-GU-U AA)-CCG-G- -NAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-CCU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GNG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGU-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG.. 3301 .......... GUAA-CAAG. .......... .(.GA-A)CC UG........ GAUCACCUCC 3361 UUUC|N~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.butyric2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 398 a 327 c 461 g 320 t 2870 others ORIGIN 1 ~......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---A CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-G|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ---AC----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- GU-------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--CAAUG AGA-U-G-C- AA-CCU-C(G 2881 -CGA)GAGU- ---------- GA-GCAAA-A CUAU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CC---- ---------- ---------- -----(---- -GCAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sacperb2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 126 c 159 g 128 t 3825 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.sacperbu 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 363 a 299 c 424 g 294 t 2996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...AGUU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AAUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGU---G CA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-GGA -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-C.. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 330 c 464 g 318 t 2872 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGCGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---ACC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGC-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-G-AUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- G-GGGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri6 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 361 a 301 c 425 g 293 t 2996 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...AGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGGGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty7 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 369 a 296 c 420 g 296 t 2995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... ...AGCU-UC (--UU----- ---------- ---------- 241 --------CG -)GA-AGUGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-AU ---AUC-(-- --------GC 541 AU-------- -)-GAU---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-AGA -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- GCGAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG. .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebuty6 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 336 a 275 c 384 g 273 t 3108 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)..AU---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-UA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-A-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CUU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCCG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC-U-G(- UAAU-)-AGA -G-GAAG--- -C-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GCAGG-C-A G-CG-AC-CU A-AGGU--GG GUC-AG-CG- AUU-GGGC-A 3301 U---U..... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.caltrosp 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 368 a 300 c 422 g 291 t 2995 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ..C|ACU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UC-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----UC--C- G--CGUA--- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)G--UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUG- CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GC-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAUAG AG-AUUAGG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-GGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAU -CC--G-UGC 1741 CG--CC---- --GC-(AAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CUC---U(- UAAUC)--GA -G-GAAG--- ---------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UA ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -UGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GCAG-C-A G-CG-CG-GU A-AGGU-AGG GUC-AG-CG- AUU....... 3301 .---AAGUC- GUAA-CAAGG UAGCC..... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri7 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 379 a 316 c 450 g 308 t 2923 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGCGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 329 c 464 g 318 t 2873 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGCGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UGCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUCC A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-G-CU -AA-CGC--- ---------- ---------- -----(---- -GUAA----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- --GAGG-C-A G-CG-AC-CU A-AGGU-AGG GUC-AG-CG- AUU-GGGG-U 3301 G---AAGUC- GUAA-CAAGG UAGCC-GUAG G(AGA-A)CC UGCGGC--UG GAUCACCUCC 3361 UU..|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri4 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 369 a 308 c 432 g 299 t 2968 others ORIGIN 1 .......... .......... .......... .........G AGAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGNGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UNCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUGG A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --CG-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-NC -NA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA-CCAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-CUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-GCGU -AA-C----- ---------- ---------- -----(---- -GC......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 368 a 307 c 432 g 299 t 2970 others ORIGIN 1 .......... .......... .......... .......... .GAGUU(U-G A)U-CCU|-G 61 GCUCAG-GAC -GAAC-GC-- UGGC-GGC-G -UGC-UU--A ACAC-AUGCA A-GUC-GAGC 121 G--AU-G--- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --AAGCU-CC (--UU----- ---------- ---------- 241 --------CG -)GG-AGNGG ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-AU--U AGCG-GCGG- 361 -A-CG-GG-U GAGU---AAC -AC-GUGGG- UAA--CCU-G C-CUCA---U -AGAG-G-GG 421 -AAU-AG-CC U--------- ------UU-- C(-GAAA-)G -GAAG-A--U UAAUACC-GC 481 AU-AAG---- ---------- -------A-U UG-U--A-GU ---GCC-(-- --------GC 541 AU-------- -)-GGC---A UA-GC----A AU--UAAA-- ---GGA---- ---------- 601 --(------- ---GUAA--- ---)------ ---------| ----UC--C- G--CUA---- 661 ----UGAG-- AUG---G-|A CCCGC----- -GU|----CG C--AUUA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAC-GG) -C-UCACC-A A|-GGC-GA- CGA------- -----UG-CG 781 U-AG-C-CG| -A-CCU--(G -AGA)-GGGU ----GA-U-- CGG-C|C-AC -AUUGG-G-A 841 (CUGA-GA-C ACG)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUAUU G-CACAAU-- GG-GG-(GAA A)-CCC-UGA UNCA|-GCAA CGCC-GC-GU 961 G-A-GU-G-A U-GAC--G-G UC(--UU-CG --)GA-UUGU AAA--GCUC| UGUC-UU-CA 1021 --GG-GAC-- GA-------- ---------( ------UAA- ---------) ---------- 1081 ---------- ---------- U-GA-CGGU- A-CCU-G-AG G-AG--GAAG ---------C 1141 -CACGGCU-A ACUAC-GUG( CCA--GCAGC CGCGGUA-A) U-A-C-GUAG |-GUGG-C-- 1201 AAG-CGUUGU CC-GGAUUUA -CU-GGGC|G UAAA-GGGA- GCG-UAG-GU -G|-GA-UA- 1261 U-UU-AAG|U GGG---AUGU G-AAA-UA-C UC-GGG-C(- UU-A)A-CCU -GG-G-UGC- 1321 -UGCA-UUGG A-AAC-UGGA U-AUCUA-GA GUG-----CA G-GA-GAGGA AAG-U|AGAA 1381 UU-CCUAGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAG-A UU-AGGAAG- AAUA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -CUUUCUG-- ---------- ---------- ---------G 1501 ACU--GU-AA CUGACA-CUG AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-GU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --CG-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AN- A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-NC -NA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA-CCAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-UGAG A--GU-UGG- CA-AU-ACCC -AAA-G-UUC 3121 G-UGA-GCGU -AA-C----- ---------- ---------- -----(---- -GC......- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri8 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 127 c 157 g 128 t 3826 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.beijeri9 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 127 c 157 g 128 t 3826 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebut13 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 127 c 157 g 128 t 3826 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebut11 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 127 c 157 g 128 t 3826 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS C.acebut10 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 138 a 127 c 157 g 128 t 3826 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. ..U-GU-AGG -GG-UU---- ---------- 1681 -(GUC-AU)- ---------- ---------- ---------- -------GAC -CUCUG-UGC 1741 CG--CC---- --GC-(UAA- ---C)G-CA- UUAA-GUAUU C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A UU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGG-AGC A-U-GU-GGU -UUAAUU-CG -(AAGCAA-C G)--CGAAGA 1921 A-CCUUA-CC UAG-AC-UUG ACA-UC|--- ---------U ---CCUG--- -AA----UUA 1981 -CCC---U(- UAAUC)--GG -G-GAAG--- CC-------- ----C----- --(UU----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------C G-)------- G--------- ----GG---| CAG-GA-AGA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGC AA-------- CGAG-C--GC AACCC-UU-A |-UU--GUU- 2281 AG--UUGC-U AC-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|A 2701 G-CA-CU-C- U-AGC-GA-G A-CU-G-CCC --GG(-GU-U AA)-CCG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-AU CAU-G-CC-C CUUAU-G-UC -UA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-U-GG -UA--CAGAG AGA-U-G-C- UA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCCAA-A CUUU--AAAA -CC-A-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGAAAC-U- C)-GCCUACA -UGAAGC-UG -GAGU-UGC- -UAGUA-AUC 3001 GC-GAA-(UC -AGA-AU)-G UCG-CGGUG- AAUAC-GUU- CCC....... .......... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.B 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 64 a 72 c 83 g 56 t 4101 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-CG--UCU- 2281 AG--UUGC-U AA-CC----- ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|U 2701 G-CA-CU-C- U-AGA-CG-G A-CU-G-CCC --GU(-GU-C GA)-AUG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CG--GGGC- 2821 A-ACA-CA-C GUG--CUACA AUGGU-C-GG -UA--UAAAG GGU-U-G-C- CA-ACC-C(G 2881 -CGA)GGGG- ---------- -A-GCCAA-U CUCAA-AAAG -CC-G-ACC- UCAGUUCGGA 2941 U-CGGAGGC- (UGCAAU-U- C)-GCCUCCG -UGAAGC-CG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGCCAC)-G CCG-CGGUG- AAUAU-GUU- CCC-GAG-CC UUU....... 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS 2.16.C 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE20 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 72 a 70 c 79 g 52 t 4103 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......CU-G |-UC--CUG- 2281 UG--UUGC-A AC-CC----- ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -------G|G 2701 G-CA-CU-C- U-CAG-GA-G A-CC-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AU CAU-G-GC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGG-C-GG -UA--CAAAC CGC-A-G-C- AA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCAAA-U CGGAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUG 3001 GU-AUA-(UC -AGA-AC)-G AUA-CCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 66 a 74 c 84 g 54 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUG- 2281 UG--UUGC-C AU-GCCC--- ---------- ---------- ----(---GA ---AA---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ----GGGC|G 2701 G-AA-CU-C- G-CAG-GA-G A-CC-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGA-C-GG -UA--CAAAG CGU-C-G-C- UA-ACC-C(G 2881 -CGA)GGGG- ---------- GA-GCCAA-U CGCAA-AAAA -CC-G-UUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGC-UG -GAAU-CGC- -UAGUA-AUG 3001 GC-AGA-(UC -AGC-AC)-G CUG-CCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD16 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 66 a 68 c 82 g 60 t 4100 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUG- 2281 UG--UUGC-C AU-CA----- ---------- ---------- ---U(---UU ---AGU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------UG|G 2701 G-CA-CU-C- G-CAG-GA-G A-CC-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-AUG--UC -A-AGUC-AU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAG CGC-U-G-C- AA-ACC-C(G 2881 -CGA)AGGG- ---------- GA-GCUAA-U CGCAA-AAAA -CU-G-GUC- UCAGUUCGGA 2941 U-CGCAGGC- (UGCAAC-U- C)-GCCUGCG -UGAAGC-UG -GAAU-CGC- -UAGUA-AUG 3001 CC-GUA-(UC -AGA-AC)-G AUG-GCGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE18 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 59 a 70 c 89 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--UUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GG -UA--CAAAC CGU-U-G-C- GA-UCC-C(G 2881 -CGA)GGGG- ---------- GA-GCUAA-U CGGAG-AAAG -CC-G-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE9 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 63 a 67 c 88 g 60 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--UUC- 2281 UG--UUGC-C AU-CGG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CCG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-A-GG -UA--CAAAC CGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CGGAG-AAAG -CC-U-GUC- UCAGUUCGGA 2941 U-UGUAGGC- (UGCAAC-U- C)-GCCUGCA -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CGA-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.FIE5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 61 a 73 c 85 g 59 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--CUC- 2281 UG--UUGC-C AU-CAC---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----GUG|G 2701 G-CA-CU-C- U-GAG-GA-G A-CU-G-CCG --GU(-GA-C AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-CG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 C-ACA-CA-C GUG--CUACA AUGGC-C-GA -CA--CAAAC CGU-C-G-C- GA-UAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CGGAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGCAGGC- (UGCAAC-U- C)-GCCUGCA -CGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD24 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 72 a 75 c 91 g 59 t 4079 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--UUC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UC ---AAG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GGA-GA-G A-CU-G-CCG --GU(-GA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-C-GA -CA--CAAAC CGU-C-G-C- AA-AAC-C(G 2881 -CGA)GGUG- ---------- GA-GCUAA-U CGGAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-AGCAGGC- (UGCAAC-U- C)-GCCUGCU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGA-(UC -AGC-AC)-G CCG-CGGUG- AACGG-AUC- CGA-AUU-CA ACGAG----C 3061 GAAACCCGG- CCG-UCG... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS env.PAD56 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 65 a 65 c 84 g 64 t 4098 others ORIGIN 1 .......... .......... .......... .......... ......(... .).....|.. 61 .......... .......... .......... .......... ....-..... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......-.. (.-....... .......... .......... 241 .......... .)........ .......... .......... .......... .......... 301 .......... .......... .......... .......... ...|...... .......... 361 .......... .......... .........- .......... .......... .......... 421 .......... .......... .........- .(......). .......... .......... 481 .......... .......... .......... ..-....... .......(-- ------.... 541 ......---- -)........ .......... ..-....... .......... .......... 601 ..(....... .......... ...)...... .........| ......-... .......... 661 .......... ........|. .......... ...|...... .......... .......... 721 .........( .........) .......... .|........ .......... .......... 781 .........| ........(. ....)..... .......... .....|.... .......... 841 (......... ...)...... .......... .(....)... .......... .......... 901 .......... .......... ......(... .)........ ....|..... .......... 961 .......... .......... ..(....... ..)....... .........| .......... 1021 .......... .......... .........( .......... ......---) .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .........( .......... .........) .......... |......... 1201 .......... .......... ........|. .......... .......... ..|....... 1261 ........|. .......... .......... ........(. ..-.)..... .......... 1321 .......... .......... .......... .......... .......... .....|.... 1381 .......... .......(.. .....).... .......... .......... .......... 1441 .......(.. ....)..... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... ...(...... ....)..... .......... .......... .......... 1621 .....-.... .......... ........|. .......... .......... ..-------- 1681 -(...-..). .......... .......... ..-------- -------... .......... 1741 .......... .....(.... ....)..... .......... .|.|...... .......... 1801 ........(. ...)...... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .(........ .)........ 1921 .......... .......... ......|... .......... .......... ...----... 1981 ....-...(- .....).... .......... .......... .......--- --(....... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... ..).------ .......... .........| .......... |....|.... 2161 .......... ..|....... .......|.. .......... |....(.... .)........ 2221 .....(.... ...)...... .......... .......... ......UU-G |-UC--UUC- 2281 UG--UUGC-C AU-CAG---- ---------- ---------- ---G(---UU ---AUG--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----CUG|G 2701 G-CA-CU-C- U-GAA-GA-G A-CU-G-CCG --GU(-AA-U AA)-ACC-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AGUC-AG CAU-G-GC-C UUUAU-G-UC -UG--GGGC- 2821 U-ACA-CA-C GUG--CUACA AUGGC-A-GA -UA--CAAAC CGU-C-G-C- GA-GAC-C(G 2881 -CAA)GGUG- ---------- GA-GCUAA-U CGGAG-AAAG -UC-U-GUC- UCAGUUCGGA 2941 U-AGCAGGC- (UGCAAC-U- C)-GCCUGCU -UGAAGU-UG -GAAU-CGC- -UAGUA-AUC 3001 GC-GGU-(UC -AGC-AC)-G ACG-CGGUG- AAUAC-GUU- CCC-GGG-CC UU........ 3061 .......... .......... .......... .......... .......... .......... 3121 .......... .......... .......... .......... .....(.... .........- 3181 ---------- ---------- ---------- ------.).. .......... .......... 3241 .......... .......... .......... .......... .......... .......... 3301 .......... .......... .......... .(.....).. .......... .......... 3361 ....|..... .......... .......... .......... .|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS Unidentifi 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 0 a 0 c 0 g 0 t 4376 others ORIGIN 1 x~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~-~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~-- ------~~~~ 541 ~~~~~~---- -~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~---~ ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1381 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1441 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1501 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1561 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1621 ~~~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(~~~-~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- -------~~~ ~~~~~~~~~~ 1741 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~-~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- --~~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~~~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~---~~ ---~~~--~~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2881 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-NTd43 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 251 a 260 c 352 g 190 t 3323 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GU-- UGGC-GGC-G -UGC-CU--G AGAU-AUGCA A-GUC-GAGC 121 G--AC-CC-C -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------C-CU (--cug---- ---------- ---------- 241 --------gc -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----G GGCG-GCGA- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- A-A--CCU-G C-CCCU---A -AGUC-G-AG 421 -GAU-AG-UC C--------- ------GU-- C(-GAAA-)G -GCGG-A--G UAAUACU-CG 481 AU-GGU---- ---------- ---------- ---------- ---ucc-(cg cc------uc 541 u------ggc g)-GGA---- ---------- ----UAAA-- ---GGAU--- ---------- 601 --(------- --cuaacc-- ---)------ ---------| ---GUC--C- G--CUU---- 661 ----AGGG-- AGG---G-|G CCUGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAC-GG) -C-CUACC-A A|-GCC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-CCU--(U AUGA)-GGGU ----GG-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUCGU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGC|-GCGA CGCC-GC-GU 961 G-C-GG-G-A A-GAA--G-C UC(--uu-cg --)GA-GUGU AAA--CCGC| UGUG-GU-UG 1021 --GG-GAG-- GA-A-GC--- --ccc-gcc( ------uuu- ---------) ggcg-gg--- 1081 ---------- -------G-U U-GA-CAGU- A-CCC-U-AC U-AG--AAAG ---------G 1141 -GGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCCC-C-- 1201 AAA-CGUUAU CC-GGUGUUA -UU-GGGC|G UAAA-GGKUC GUG-UAG-GC -G|-UC-CC- 1261 G-UC-AAG|U UUU---ACCU C-AAA-GA-C UA-UGG-C(- UC-A)A-CCA -UA-G-GAA- 1321 --GGG-UAAA A-AAC-UGAC G-GGAUA-GA AUU----CCC U-CA-AGGGG GAC-G|GGAA 1381 CU-UGCGGA- GGA-GCA(-G UGAAA)-UGC -GU-UGAU-A CC-GCAGGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGC- -GUCCCUU-- ---------- ---------- ---------C 1501 GAG--GG-AA UUGACG-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-GU--A 1621 AAC-GCAUGU C--UG-CU-- -------A|G -CU-GU-GCU -UU-UCcucg cc-------- 1681 -(-ucauc)- ---------- ---------- ---------- -ggcgggguu -aggca-ugg 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAGA C|C|G-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGU -UCAAUU-CG -(AGACGA-A C)--CGAAGA 1921 A-CCUCA-CC AGG-GC-UUG ACA-UG|--- ---------c ---uacc--- -guucacccg 1981 -aaa-g--(- GAAA-)-cuu -u-cggg--g au-------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- gg-------- ----au---| ggu-ag--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ---~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-NTd42 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 291 a 223 c 314 g 224 t 3324 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GU-- UGGC-GGC-G -UGC-CU--G AGAU-AUGCA A-GUC-GAGC 121 G--AU-CC-C -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CU (--uag---- ---------- ---------- 241 --------uc -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----A AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- A-A--UCU-A C-CCCU---U -UCUG-G-AC 421 -CAU-AG-UU C--------- ------GU-- C(-GAAA-)G -ACGG-A--G UAAUUGU-CC 481 AU-GGU---- ---------- ---------- ---------- ---ucc-(cg ac------cu 541 a------guc g)-GGA---- ---------- ----UAAA-- ---GAGAG-- ---------- 601 --(------- ---uaac--- ---)------ ---------| --UUCU--C- G--GAA---- 661 ----AGGG-- AUG---A-|G CCUGC----- -GG|----CU U--AUCAUG- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-AG 781 U-AG-C-UG| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGC|-GCGA CGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-C UC(--uu-ac a-)GA-GUGU AAA--CUAC| UGUA-GU-AG 1021 --GG-GAG-- GA-A-GU--- --ccc-gac( ------uua- ---------) gucg-gg--- 1081 ---------- -------G-U U-GA-CAGU- A-CCC-U-AC U-AG--AAAG ---------G 1141 -GGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCCC-C-- 1201 AAA-CGUUAU CC-GGUUUUA -CU-GGGU|G UAAA-AUGUC GUG-UAG-GU -G|-UU-CU- 1261 G-GU-AAG|U UUU---UGUU U-AAA-GA-C UA-AGG-C(- UU-A)A-CCU -UA-G-AAA- 1321 -AGAC-AAAA A-UAC-UACC A-GAAUA-GA GUU----AUC U-UU-AGGGA GAU-U|GGAA 1381 CU-CAAGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-UUGGGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AUCUCUG-- ---------- ---------- ---------G 1501 AAG--AU-AA CUGACA-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-UU--A 1621 AAC-GCAUGC U--UG-CU-- -------A|G -CC-GC-AUU -UU-GUcuga c--------- 1681 -(-uu-uu)- ---------- ---------- ---------- --gucugaca -aggug-uag 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAAG C|U|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGU -UCAAUU-CG -(AUACAA-A C)--CGAAGA 1921 A-CCUCA-CC AAG-AU-UUG ACA-UG|--- ---------c ---uagc--- -guccuauuu 1981 -cgc-a--(- GAAA-)-ugc -g-aaaa--- au-------- ---uc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- ga-------- ----ag---| gcu-ag--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ---~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-OPd29 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 292 a 223 c 314 g 224 t 3323 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GU-- UGGC-GGC-G -UGC-CU--G AGAU-AUGCA A-GUC-GAGC 121 G--AU-CC-C -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ------A-CU (--uag---- ---------- ---------- 241 --------uc -)GG-G---- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|-----A AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- A-A--UCU-A C-CCCU---U -UCUG-G-AC 421 -CAU-AG-UU C--------- ------GU-- C(-GAAA-)G -ACGG-A--G UAAUUGU-CC 481 AU-GGU---- ---------- ---------- ---------- ---ucc-(cg ac------cu 541 a------guc g)-GGA---- ---------- ----UAAA-- ---GAGAG-- ---------- 601 --(------- ---uaac--- ---)------ ---------| --UUCU--C- G--GAA---- 661 ----AGGG-- AUG---A-|G CCUGC----- -GG|----CU U--AUCAUG- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- CGA------- -----CG-AG 781 U-AG-C-UA| -G-CCU--(G -AGA)-GGGU ----GG-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGC|-GCGA CGCC-GC-GU 961 G-U-AG-G-A A-GAA--G-C UC(--uu-ac a-)GA-GUGU AAA--CUAC| UGUA-GU-AG 1021 --GG-GAG-- GA-A-GU--- --ccc-gac( ------uua- ---------) gucg-gg--- 1081 ---------- -------G-U U-GA-CAGU- A-CCC-U-AC U-AG--AAAG ---------G 1141 -GGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCCC-C-- 1201 AAA-CGUUAU CC-GGUUUUA -CU-GGGU|G UAAA-AUGUC GUG-UAG-GU -G|-UU-CU- 1261 G-GU-AAG|U UUU---UGUU U-AAA-GA-C UA-AGG-C(- UU-A)A-CCU -UA-G-AAA- 1321 -AGAC-AAAA A-UAC-UACC A-GAAUA-GA GUU----AUC U-UU-AGGGA GAU-U|GGAA 1381 CU-CAAGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-UUGGGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGA- -AUCUCUG-- ---------- ---------- ---------G 1501 AAG--AU-AA CUGACA-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-UU--A 1621 AAC-GCAUGC U--UG-CU-- -------A|G -CC-GC-AUU -UU-GUcuga c--------- 1681 -(-uu-uu)- ---------- ---------- ---------- --gucugaca -aggug-uag 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAAG C|U|A-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AGC A-U-GU-GGU -UCAAUU-CG -(AUACAA-A C)--CGAAGA 1921 A-CCUCA-CC AAG-AU-UUG ACA-UG|--- ---------c ---uagc--- -guccuauuu 1981 -cgc-a--(- GAAA-)-ugc -g-aaaa--- au-------- ---uc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- ga-------- ----ag---| gcu-ag--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU-a 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ---~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-OPd3 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 288 a 236 c 310 g 208 t 3334 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UGGC-GGC-G -UGU-CU--A AGGC-AUGCA A-GUC-GAAC 121 G--GU-CU-U -A-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -AUUGAU-UC (--gc----- ---------- ---------- 241 --------aa -)GA-AUCAA ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- UAA|-GA--U AGUG-GCAA- 361 -A-CG-GG-U GCGU---AAC -AC-AUUGG- U-A-ACCU-A C-CUUG---A -GGAC-A-GG 421 -CAU-AA-CU C--------- ------CG-- C(-GAAA-)G -CGGA-G--C UAAUUCC-UG 481 AU-AAA---- ---------- ---------- ---------- ---GGC-(ga ggggacauaa 541 a-gucauucu c)-GCC---- ---------- ----CAAA-- ---GGUC--- ---------- 601 --(------- ---caaaa-- ---)------ ---------| ---GAC--C- G--CCU---- 661 ----CGAG-- AGG---G-|G CCUAU----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAC ----GG-S-- CAG-C|C-UC -AGUGG-G-A 841 (CUGA-GA-C ACU)--GCCC -ACA-C-ACC -(UACG)--G GUG-GC-UG- C-A---GU-C 901 AAS-AAUCUU C-CCCAAU-- GG-AC-(GAA A)-GUC-UGA GGGA|-GCGA CGCC-GC-GU 961 G-C-UG-G-A A-GAA--G-C CC(--uu-cg --)GG-GUGU AAA--CAGC| UUUU-CU-GG 1021 --GA-GAU-- GA-A-UU--- ---------( ---------- ---------) ---------- 1081 ---------- ---------C U-GA-CAGU- A-UCC-C-AG G-AA--UAAG ---------A 1141 -GGUUCCU-A ACUCU-GUG( CCA--GCAGG AGCGGUA-A) U-A-C-AGAG |-ACCU-C-- 1201 AAG-CAUUAU CC-GGAUUUA -CU-GGGC|G UAAA-GCGU- CCG-CAG-GC -G|-GU-UU- 1261 U-GA-AAG|U CAU---UCGC C-AAA-UC-C CG-AAG-C(- UC-A)A-CUU -CG-G-AAC- 1321 -CGCG-AAUG A-UAC-UUCA A-AACUA-GA GGC-----CG G-GA-GAGGC AAG-U|GGAA 1381 CU-ACCGGU- GUA-GCG(-G UAAAA)-UGC -GU-UAAU-A UC-GGUAGG- AACA-CCAA- 1441 -A-A-GC(-G AA-G)GCAG- -CUUGCUA-- ---------- ---------- ---------G 1501 AAC--GG-UC CUGACG-CUC AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-UA- -GG(AUUA-G AUAC)-CCU- ----AGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGA G--UG-NU-- -------A|G -GC-AU-UGG -AA-GUa--- ---------- 1681 -(-uc-ga)- ---------- ---------- ---------- ------cccu -uucag-ugc 1741 cguuaa---- --GG-(UAA- ---C)C-CG- UUAA-GCACU C|C|G-CSU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CU--G 1861 C-A--CA-AG CGGUGG-AAC A-U-GU-GGU -UUAAUU-CG -(ACGAUA-A G)--CGAGGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------g ---cacu--- -gcaa--gcg 1981 -cac-a--(- GAAA-)-ugu -g-ug----- a--------- ---cc----- --(uuc---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------g a-)------- gg-------- ----g----| ugu-gc--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-a 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ---~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-OPd16 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 264 a 235 c 338 g 206 t 3333 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GC-- UGGC-GGC-A -UAG-AU--A AGGC-AUGCA A-GUC-GUGC 121 G--AG-UC-- ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----uug-ug (---c----- ---------- ---------- 241 --------uu -)ug-ca--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------C- AAG|-GC--U AGCG-GCGA- 361 -A-CG-GG-U UAGU---AAC -AC-GUGGG- U-U--AUC-U G-CCUC---A -AUGCCA-GG 421 -GAU-AG-CC U--------- ------CG-- C(-GAAA-)G -CGGG-G--G UAAUACC-UG 481 AU-AGU---- ---------- ---------- ---------- ---UCG-(ag ca-----uau 541 uu-----ugc u)-CGA---- ---------- ----UAAA-- ---GCC---- ---------- 601 --(------- ---GAAA--- ---)------ ---------| ----GG--C- G--CAU---- 661 ----UGGG-- AGG---A-|G CCCGC----- -GG|----CC U--AUCA-G- CUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-G-GG| -G-CGU--(G -AGA)-GCGU ----GA-C-- CCC-C|A-AC -AAGGG-C-A 841 (CUGA-GA-C ACG)--GGCC -CUA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GAG-AAUCUU G-GACAAU-- GG-GC-(GAA A)-GCC-UGA UCCA|-GUGA UGCC-GC-GU 961 G-C-GG-G-A C-GAA--G-A CC(--uu-cg --)GG-UUGU AAA--CCGC| UUUU-CU-UG 1021 --GG-GAA-- GA-A-CC--- ----a-agu( -----uuuac u--------) acuu------ 1081 ---------- -------G-G U-GA-CGGU- A-CCC-A-AG G-AA--UAAG ---------G 1141 -GGUGACU-A AACUC-GUG( CCA--GCAGU AGCGGUA-A) U-A-C-GAGU |-GCCC-C-- 1201 AAG-CGUUAU CC-GGAAUCA -CU-GGGC|G UAAA-GCGU- CCG-UAG-GC -G|-UC-CU- 1261 A-UC-AAG|- UUU---CUUG U-UAU-CU-C CA-GUG-C(- UC-A)A-CAU -UG-G-AGG- 1321 -AGCA-AGAA A-AAC-UGAU A-GGAUA-GA GGA-----UA U-CA-GAGGC CGG-U|GGAA 1381 CU-CACGGA- GUA-GGG(-G UGAAA)-UCC -GU-UGAU-A CC-GUGGGG- AACA-CCGA- 1441 -A-A-GC(-G AA-G)GCAG- -CCGGCUA-- ---------- ---------- ---------G 1501 GGU--AU-UC CUGACG-CUG AG-G------ -------GA- C-GAAA-GC- GU-GGG-GA- 1561 GA-GAA-CG- -GG(AUUA-G AUAC)-CCC- ----GGUA-U UM----CAC- G-CY-GU--A 1621 NAC-G-AUGC U--GA-CU-- -------A|G -GU-AU-UUC -GA-GUg--- ---------- 1681 -(-uc-ga)- ---------- ---------- ---------- ------cccu -cggag-ugc 1741 cg--aa---- --GC-(UAA- ---C)G-CG- UUAA-GUCAG C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU AG-ACGGG-G -G-C-UC--A 1861 C-A--CA-AG CGGUGG-ACC A-C-GU-GGC -UUAAUU-CG -(AUGAUA-A G)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------c ---uagg--- -auguacguc 1981 -ggc-g--(- GAAA-)-cgu -c-ggcg--- ga-------- ---ccg---- --(uca---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a uu)------c gg-------- ----ag---| ccu-ag--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-a 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ---~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd5 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 288 a 215 c 317 g 238 t 3318 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -AAAU-GC-- UAGC-GGU-G -UGC-CU--G AGAU-AUGCA A-GUC-GAGC 121 G--AC-CC-A UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UGA-CC (--GC----- ---------- ---------- 241 --------AA -)GG-UU--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AAU|-GG--G AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAU -AU-AUAGG- A-A--Ucu-g c-ccCU---A -AGUG-G-AA 421 -CAU-AG-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--G UAAUCUU-CC 481 AU-AGU---- ---------- ---------- ---------- ---CUC-(ca cc------uu 541 u------ggu g)-GAG---- ---------- ----UAAA-- ---GACC--- ---------- 601 --(------- --uuuacc-- ---)------ ---------| ---GGU--U- G--CUA---- 661 ----AGGG-- AUG---A-|G CCUGU----- -AU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-GA-( GU-AAU-AG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -A-UUU--(G -GGA)-GAAU ----GG-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU U-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCAC|-GCGA CACC-GC-GU 961 G-U-AG-G-A A-UAA--G-G UC(--UU-au u-)GA-UCGU AAA--CUAC| UGUU-GG-AG 1021 --GG-GAA-- GA-A-GA--- ---uc-auc( ------guaa ---------) gaug-g---- 1081 ---------- -------U-U U-GA-CGGU- A-CCC-U-CC G-AG--GAAG ---------G 1141 -AGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCUU-C-- 1201 AAG-CAUUAU CC-GGUUUUA -CU-GGGC|G UAAA-GGGUC GUG-UAG-GU -G|-GC-CU- 1261 A-GU-AAG|G CAU---CUUU G-AAA-GC-U CG-AUG-C(- UU-A)A-CAU -CG-A-GUU- 1321 -GGGG-AUGC A-ACU-GCUA A--ACUG-GA AUU----UCU U-CA-AGGGU AAU-C|GGAA 1381 CU-CAGAGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CU-CUGGGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -AUUACUG-- ---------- ---------- ---------G 1501 GAG--GA-AA UUGACA-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUU- G-CC-CU--A 1621 AAC-GAAUGU U--UG-CU-- -------A|C -CU-GC-AUU -UU-UUucca cc-------- 1681 -(-uu-u-)- ---------- ---------- ---------- --gguggaau uaggug-ugg 1741 ga--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAAA C|C|G-CCU- G-GGGAGUAC 1801 UGC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGU -UCAAUU-UG -(AUACGA-A C)--CAAAGA 1921 A-CCUCA-CC AAG-UY-UUG ACA-UG|--- ---------c ---aagc--- -guccagcuc 1981 -ugu-a--(- GAAA-)-uau -g-gag---- ug-------- ---uu----- --(cg----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------c a-)------- ag-------- ----aa---| gguuug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd12 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 204 a 155 c 244 g 175 t 3598 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GU-- UGGC-GGU-G -UGC-CU--G AGAU-GUGCA A-GUC-GAGC 121 G--Au-UA-U UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -----UG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-CG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GAU|-AG--U AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAU -GU-ACAGG- A-A--UCU-G C-CCCU---U -AGCG-G-AA 421 -CAU-AG-CU C--------- ------CG-- G(-GAAA-)C -CGGG-A--G UAAUUUU-CC 481 AU-GGC---- ---------- ---------- ---------- ---CUC-(ca cc------uu 541 u------ggu g)-GAG---- ---------- ----UAAA-- ---AGCC--- ---------- 601 --(------- --uuuacc-- ---)------ ---------| ---GGU--C- G--CUA---- 661 ----AGGG-- AUG---A-|G CCUGU----- -AU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-GC-(GAA A)-GCC-UGA CCGC|-GCGA CACC-GC-GU 961 G-U-AG-G-A U-UUU--G-A UA(--uu-au g-)UA-UCGU AAA--CUAC| UGUU-GG-AG 1021 --GG-GAA-- GA-A-GA--- ---uc-auc( ------guaa ---------) gaug-g---- 1081 ---------- -------U-U U-GA-CGGU- A-CCC-U-CC G-AG--AAAG ---------G 1141 -AGCCGCU-A ACUGC-GUG( CCA--GAAGC GUUGGUA-A) U-A-C-GUGG |-GCUC-C-- 1201 AAG-CAUUAU CC-GGUCUUA -UU-GGGC|G UAAA-GGGUC GUG-UAG-AC -U|-GU-UU- 1261 G-AU-AAG|G UAU---CUAU G-AAA-GC-U CG-CCG-C(- UU-A)A-CGG -UG-A-GUU- 1321 -GGGG-AUAC G-ACU-GUCA U-GACUA-GA UUU----UUU U-CA-AGGGU AAU-C|GGAA 1381 CU-CAGAGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CU-CUGGGG- AACA-CCCA- 1441 -U-G-GC(-G AA-G)GCAG- -AUUACUG-- ---------- ---------- ---------G 1501 GAG--GA-AA AUGACG-UUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-------- 1681 -(-~~-~~)~ ~~~~~~~~~~ ~~~~~~~~~~ ~--------- ------~~~~ ~~~~-~~~~~ 1741 -~~~~~~~~~ ~~~~-~~~~~ ~~~~~~~~~~ -~~~~~~~~~ ~~-|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~-~~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1921 ~-~~~~~~~~ ~~~~~~~~~~ ~~~--~|~~~ ~~~~~~~~~~ ~~~-~~~~~~ ~~-----~~~ 1981 ~~~-~~~--~ ~~-~~-~~~~ ~~~-~~~~~~ ~~~~~~~~~~ ~~~~~~---- ---~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~--------~ ~~~~~~~~~~ ~~~~~~~~-~ ~~~~~~~~~~ -~~~~~~~~~ 2161 ~~~~~~~~~~ ~~~~~~-~~~ ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd6 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 289 a 223 c 316 g 232 t 3316 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UAGC-GGU-G -UGC-UU--G AGAU-AUGCA A-GUC-GAGC 121 G--AC-CC-U AU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----UUG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-UG--- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------A- GUA|-GG--G AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAU -AC-AUAGG- U-A--CUU-G C-CCCU---A -GGCG-G-AG 421 -CAU-AG-CC C--------- ------CG-- A(-GAAA-)U -CGGG-G--G UAAUUCU-CC 481 AU-AGU---- ---------- ---------- ---------- ---UUC-(cc gau-----ua 541 u-----aucg g)-GAA---- ---------- ----UAAA-- ---GAGC--- ---------- 601 --(------- --uuaacc-- ---)------ ---------| ---GCU--C- A--CCA---- 661 ----AGGG-- AUA---G-|G CCUAU----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -A-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AG -AGGAG-U-A 841 (CUGA-GA-C ACG)--GACC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGC|-GCGA CACC-GC-GU 961 G-U-AG-G-A A-UAA--G-C UC(--UU-CG --)GA-GUGU AAA--CUAC| UGUG-GU-AG 1021 --GG-GAA-- GA-A-GA--- ---uc-gcc( ------gcaa ---------) ggcg-a---- 1081 ---------- -------U-U U-GA-CGGU- A-CCC-U-AC U-AG--AAAG ---------G 1141 -AGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCUU-C-- 1201 AAG-CAUUGU CC-GGUCUUA -UU-GGGC|G UAAA-GUGUC GUG-UAG-GC -G|-GU-UU- 1261 A-GU-AAG|U UAU---UUCU U-AAA-UU-C CG-GUG-C(- CU-A)A-CAC -CG-G-UAU- 1321 -UGGA-AGUA A-UAC-UGCU U-UACUA-GA AUU----UUC U-AG-AGGGA AAC-U|GGAA 1381 YU-CAAGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-UUGGGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAA- -GUUUCUG-- ---------- ---------- ---------G 1501 CAG--AA-AA UUGACG-CUG AG-A------ -------CA- C-GGAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CCUA-G UC----CUA- G-CC-CU--A 1621 AAC-GAAUGU C--UG-CU-- -------A|C -CU-GC-AUC -UU-AUucca cc-------- 1681 -(-uu-u-)- ---------- ---------- ---------- gguggaugu- -aggug-cgg 1741 ga--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGU -UCAAUU-CG -(AUACGA-A A)--CGAAGA 1921 A-CCUCA-CC AAG-GU-UUG ACA-UG|--- ---------c ---uagu--- -guucagucc 1981 -uga-u--(- GAAA-)-auc -g-ggau--- gu-------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- gg-------- ----ag---| acu-ag--ca |---C-A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd10 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 286 a 222 c 320 g 232 t 3316 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UAGC-GGC-G -UGC-UU--G AGAU-AUGCA A-GUC-GAGC 121 G--CC-CC-A UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUUG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-UGA-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- AAU|-GG--G AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAU -AU-ACAGG- A-A--CCU-G C-CCCU---A -GGUA-G-AG 421 -GAU-AG-CC C--------- ------AG-- C(-GAGA-)G -UUGG-G--G UAAUACU-UU 481 AU-GGU---- ---------- ---------- ---------- ---UUU-(cc gc------cc 541 u------gcg g)-AAA---- ---------- ----UAAA-- ---GAGC--- ---------- 601 --(------- --uucacc-- ---)------ ---------| ---GCU--C- G--CCA---- 661 ----AGGG-- AUG---G-|G CCUGU----- -AU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-AG-( GU-AAC-GG) -C-UUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -A-UCU--(U -AGA)-GGAU ----GA-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-U ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU U-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCAC|-GCGA CGCC-GC-GU 961 G-U-AG-G-A A-UAA--G-C UU(--UU-CG --)GA-GUGU AAA--CUAC| UGUG-AU-AG 1021 --GG-GAA-- GA-A-GU--- --ucu-guc( ------guaa ---------) gaca-gg--- 1081 ---------- -------A-U U-GA-CGGU- A-CCC-U-AU U-AG--AAAG ---------G 1141 -AGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCUC-C-- 1201 AAG-CAUUAU CC-GGUUUUA -UU-GGGC|G UAAA-GGGUC GUG-UAG-GC -G|-GU-UU- 1261 G-GC-AAG|U UAU---CUUU G-AAA-UU-C CA-AUG-C(- CU-A)A-CAU -UG-G-AAU- 1321 -UGGA-GAUA A-AAC-UGUC A-UACUA-GA GUU----UUC U-UU-AGUGG GAC-U|GGAA 1381 CU-CAAGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-UCGGGG- AACA-CCAA- 1441 -U-G-GU(-G AA-G)ACAA- -GUCCCUG-- ---------- ---------- ---------G 1501 GAG--AU-AA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-CU--A 1621 AAC-GAAUGU C--UG-CU-- -------A|C -CU-GC-AUG -AA-UCaugc ---------- 1681 -(-uu-uu)- ---------- ---------- ---------- ---gcaugac -ucgug-ugg 1741 ga--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAGA C|C|G-CCU- G-GGGAGUAC 1801 GAC-C---(G CAA)---G-G UU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGU -UCAAUU-CG -(AUACGA-A C)--CGAAGA 1921 A-CCUCA-CC AAG-AU-UUG GCA-UG|--- ---------c ---uagc--- -gacca-gcu 1981 -ucc-c--(- GUAA-)-ugg -g-gaag--- ug-------- ---uu----- --(cgc---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- ga-------- ----ag---| gcu-ag--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd1 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 276 a 228 c 332 g 218 t 3322 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UGGC-GGC-G -UGC-CU--G AAAU-AUGCA G-GUC-GAAC 121 G--GG-AU-U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUGAAG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-CAGAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- AGA|-UU--C AGUG-GCGG- 361 -A-CG-GC-U GAGU---AAC -GC-GUAAG- A-A--UCU-C C-CCCA---U gAGUC-U-CA 421 -CAU-AG-CU C--------- ------AC-- C(-GAAA-)G -GUGG-G--G UAAUUUG-AG 481 AU-AGU---- ---------- ---------- ---------- ---CUG-(cu cc------gc 541 aag----gga g)-CAG---- ---------- ----UAAA-- ---GCC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GG--C- G--CUU---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-UA- CAA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(C AUGA)-GGAU ----GA-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-AC-(GAA A)-GUC-UGA CCGC|-GCGA CGCC-GC-GU 961 G-U-GG-A-A U-GAA--G-C UC(--CAcaa --)GA-GUGU AAA--CCAC| UGUG-GU-AG 1021 --GG-GAA-- GA-G-AU--- ---------( ---------- ---------) ---------- 1081 ---------- ---------C G-GA-CGGU- A-CCC-U-AC U-AG--AAAG ---------U 1141 -AGCCGCU-G ACUGC-GUG( CCA--GAAGC GUCCGUA-A) U-A-C-GUGG |-GCUA-C-- 1201 AAG-CAUUAU CC-GGUGUCA -UU-GGGC|G UAAA-GGGUC GUG-UAG-GC -G|-GA-UC- 1261 G-GU-AAG|U CAC---CUUU C-AAA-UC-U UC-GGG-C(- UU-A)A-CUC -GA-A-AAC- 1321 -UGGG-GGUG A-UAC-UAUU G-GUCUA-GA AGU----UUC U-UU-AGGGA GAA-C|GGAA 1381 CU-GUGGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-CACGGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUA-- ---------- ---------- --------UG 1501 AGA--AA-UC UUGACG-CUG AG-A------ -------CA- C-GAAA-GU- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- A-CC-GU--A 1621 AGC-GAAUGU A--UG-CU-- -------G|G -CU-GC-AUG -GU-UUgucg cc-------- 1681 -(-uu-cg)- ---------- ---------- ---------- -ggcgauauu -ccgug-ugg 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(ACACAA-A A)--CGAAGA 1921 A-CCUUA-CC AAG-GC-UUG ACA-UG|--- ---------c ---uagc--- -guucuauuu 1981 -ccu-g--(- GAAA-)-cag -g-agaa--- au-------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- gg-------- ----ag---| gcu-ag--ca |---C|C--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G U-U---CU-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd15 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 270 a 231 c 338 g 214 t 3323 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UGGC-GGC-G -UGC-CU--G AGAU-AUGCA A-GUC-GAAC 121 G--GG-AC-U UA-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUGAAG-CC (--GC----- ---------- ---------- 241 --------AA -)GG-CAGAU C--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- AGA|-UU--C AGUG-GCGG- 361 -A-CG-GC-U GAGU---AAC -GC-GUAG-- A-A--UCU-C C-CCCA---U gAGUC-U-CA 421 -CAU-AG-CU C--------- ------AC-- C(-GAAG-)G -GUGG-G--G UAAUUUG-AG 481 AU-AGU---- ---------- ---------- ---------- ---CUG-(cu cc------gc 541 aa-----gga g)-CAG---- ---------- ----UAAA-- ---GCC---- ---------- 601 --(------- ---GCAA--- ---)------ ---------| ----GG--C- G--CUU---- 661 ----UGGG-- AUG---A-|G CUUGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-GG-( GU-AAU-GG) -C-CCACC-A A|-GCC-UA- CAA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(C AUGA)-GGAU ----GA-U-- CAG-C|C-AG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUAGU C-GGCAAU-- GG-AC-(GAA A)-GUC-CGA CCGC|-GCGA CGCC-GC-GU 961 G-U-GG-G-A U-GAA--G-C UC(--CAcaa --)GA-GUGU AAA--CCAC| UGUG-GU-AG 1021 --GG-GAA-- GA-G-AU--- ---------( ---------- ---------) ---------- 1081 ---------- ---------C G-GA-CGGU- A-CCC-U-AC U-AG--AAAG ---------U 1141 -AGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCUA-C-- 1201 AAG-CAUUAU CC-GGUGUCA -UU-GGGC|G UAAA-GGGUC GUG-UAG-GC -G|-GA-UC- 1261 G-GU-AAG|U CAC---CUUU C-AAA-UC-U UC-GGG-C(- UU-A)A-CUC -GA-A-AAC- 1321 -UGGG-GGUG A-UAC-UAUU G-GUCUA-GA AGU----UUC U-UU-AGGGA GAA-C|GGAA 1381 CU-GUGGGA- GGA-GUA(-G UGAAA)-UGC -GU-UGAU-A CC-CACGGG- AACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -UUCUCUA-- ---------- ---------- --------UG 1501 AGA--AA-UC UUGACG-CUG AG-A------ -------CA- C-GAAA-GU- UA-GGG-GA- 1561 GC-GAA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- A-CC-GU--A 1621 AAC-GAAUGU A--UG-CU-- -------G|G -CU-GC-AUG -GU-UUgucg cc-------- 1681 -(-uu-cg)- ---------- ---------- ---------- --ggcgauau uccgug-ugg 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCAUA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-G--CA-AC CAGAGG-AAC A-U-GU-GGU -UUAAUU-CG -(AUACGA-A C)--CGAAGA 1921 A-CCUUA-CC AGG-GC-UUG ACA-UG|--- ---------c ---uauc--- -guacagccu 1981 -gcc-g--(- GAAA-)-cgg -u-gggc--a au-------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- gg-------- ----au---| gau-ag--ca |---C|C--G 2161 GU-GA-UGCA UG|G-CUG-- UCG-UCA|-G U-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd2 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 275 a 223 c 336 g 223 t 3319 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UAGC-AGU-G -CGC-CU--G AGAU-AUGCA A-GUC-GAGC 121 G--UU-GC-C UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GGAAAG-AG (--CU----- ---------- ---------- 241 --------UG -)CU-CUUU- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- CGG|-GG--A AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- U-A--CUU-A C-CCCU---A -GGUA-G-GG 421 -AAU-AG-CU C--------- ------AC-- C(-GAAA-)G -GUGG-G--G UAAUGCC-CU 481 AU-GGU---- ---------- ---------- ---------- ---CUC-(ca ac------uu 541 u------guu g)-GAG---- ---------- ----UAAA-- ---AUC---- ---------- 601 --(------- ---UUCG--- ---)------ ---------| ----GA--C- G--CCA---- 661 ----AGGG-- AGA---G-|A CCUGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-UG-( AU-AAU-AG) -C-GCACC-A A|-GCC-UA- CGA------- -----CG-GG 781 U-AG-C-UG| -G-CCU--(C AUGA)-GGGU ----GG-U-- CAG-C|C-GG -AGGGG-G-A 841 (CUGA-GA-C ACG)--GCCC -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-C 901 AGG-AAUCGU C-GGCAAU-- GG-GG-(GAA A)-CCC-UGA CCGC|-GCGA CACU-GC-GU 961 G-U-AG-G-A U-GAA--G-U UC(--GA-AA --)GA-GCGU AAA--CUAC| UGUG-GU-AU 1021 --AG-GAA-- GA-A-GG--- --cau-aac( ------guaa ---------) guua-ug--- 1081 ---------- -------U-U U-GA-CGGU- A-CUA-U-AC U-AG--AAAG ---------G 1141 -GGCCGCU-A ACUGC-GUG( CCA--GAAGC GUCGGUA-A) U-A-C-GUGG |-GCCC-C-- 1201 AAG-CAUUAU CC-GGUUUAA -UU-GGGC|G UAAA-GGGUC GUG-UAG-GC -G|-GA-UA- 1261 G-GU-AAG|U UAU---CUUU A-AAA-UU-C AG-AGG-C(- UU-A)A-CCU -CU-G-ACC- 1321 -UGGG-GGUA A-UAC-UGCC A-AUCUG-GA GUU----UUC U-UU-AGGGU AAG-C|GGAA 1381 CU-GAGUGA- GGA-GCA(-G UGAGA)-UGC -GU-UGAU-A CA-CUCGGG- GACA-CCAG- 1441 -U-G-GC(-G AA-G)GCGG- -CUUACUG-- ---------- ---------- ---------G 1501 AAG--AA-GA CUGACG-CUG AG-A------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GGA-GC- -AG(AUUA-G AGAC)-CUG- ----CGUA-G UC----CUA- G-CC-CU--A 1621 AAC-GAAUGU U--CG-CU-- -------A|G -CU-gc-auu -gg-ucaacc ---------- 1681 -(-cuugu)- ---------- ---------- ---------- ---gguugaa -cagug-ugg 1741 cg--aa---- --GG-(UAA- ---C)C-CG- UUAA-GCGAA C|C|G-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-GCGGG-G -A-G-GC--A 1861 C-A--CA-AC CAGUGG-AAC A-U-GU-GGC -UUAAUU-CG -(AAACAA-A C)--CGAAGA 1921 A-CCUCA-CC AGG-GU-UUG ACA-UG|--- ---------c ---aacu--- -gcaa--guc 1981 -uua-u--(- GAAA-)-gua -g-ga----- cg-------- ---cc----- --(uu----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a g-)------- ag-------- ----gg---| ugu-ug--ca |---C|A--G 2161 GU-GC-UGCG UG|G-CUG-- UCG-UCA|-G U-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd9 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 284 a 239 c 326 g 228 t 3299 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -AAAC-GU-- UGGC-GGU-G -UGU-CU--U AGGU-AUGCA A-GUC-GAGC 121 G--AU-CA-U UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- -GUUCUG-AC (--GC----- ---------- ---------- 241 --------AA -)GU-CAGAA U--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------G- GAU|-GG--U AGCG-GCGG- 361 -A-CG-GC-U GAGU---AAC -GC-GUGGG- A-A--CGU-G C-CCC----A -UGGC-A-GG 421 -GAACAG-CU C--------- ------GC-- C(-GAAA-)G -GCGG-G--G UAAUACC-CU 481 AU-ACG---- ---------- ---------- ---------- ---CUC-(ca uuca----gu 541 aaua-uggcu g)-GAG---- ---------- ----GAAA-- ---GAGCG-- ---------- 601 --(------- ---uaac--- ---)------ ---------| --UGCU--C- A--CCA---- 661 ----AGGG-- AUC---G-|G CCUGC----- -GU|----CC U--AUCA-G- GUA-G---UU 721 GG-UA-GG-( GU-AAU-GG) -C-CUACC-A A|-GCC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAC ----GG-A-- CAG-C|C-AG -AGGAG-C-A 841 (UUGA-GA-U ACG)--GGCU -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AC-C 901 AAG-AAUCUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CACC-GC-GU 961 G-U-GG-G-A U-GAC--G-C CU(--cu-ag --)GG-GUGU AAA--CCAC| UGUG-AU-AG 1021 --GA-GAA-- GA-A-GU--- ----c-cag( ------cuug ---------) cugg------ 1081 ---------- -------A-U U-GA-CGGU- A-CCC-U-AU U-AG--AAAG ---------U 1141 -AGCUGCU-A ACUAC-GUG( CCA--GAAGC CUCGGUU-A) G-A-C-GUAG |-GCUA-C-- 1201 GAA-CGUUAU CC-GAUUUCA -CU-GGGC|G UAAA-GGGAC GCG-UAG-GC -G|-GC-UU- 1261 A-GU-AAG|U CGU---GCUU U-AAA-UC-C CC-CUG-C(- UU-A)A-CGG -GGCG-GA-- 1321 -UGGG-CGCG A-UAC-UAUU G-AGCUG-GA GUU-----UU C-UG-CAGGA GAG-C|GGAA 1381 CG-UUCUUU- GUA-GCG(-G UAAAA)-UGC -GU-UGAU-A AA-GAACGG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUCUCUA-- ---------- ---------- ---------G 1501 AAG--UU-UA CUGACG-CUG AG-G------ -------CU- C-UAAA-GC- CA-GGG-GA- 1561 GC-AAA-AG- -GG(AUUA-G AGAC)-CCC- ----UGUA-G UC----CUG- G-CC-CU--A 1621 AAC-GCAUGC C--UG-CU-- -------A|G -UC-Uu-ucu aua-uccuga c--------- 1681 -(-gc-aa)- ---------- ---------- ---------- --gucaggau -gggag-agg 1741 cg-uaa---- --GC-(UAA- ---C)G-CA- UUAA-GCAGG C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-G UU-AAAACUC -AAACUGAAU AG-GCGGG-G -A-C-CC--A 1861 C-C--CA-AC GAGUGG-AAC A-U-GU-GGU -UCAAUU-CG -(AAACAA-A C)--CGAAGA 1921 A-CCUCA-CC AAG-GU-UUG ACA-UU|--- ---------c ---uugu--- -gaaa--ucc 1981 -uua-u--(- GAAA-)-gua -a-ggac--- cu-------- ---uuagac- --(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u u-)---gucu aa-------- ----ac---| uaa-ag--ga |---C|A--G 2161 CU-GU-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG A)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd17 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 284 a 234 c 313 g 214 t 3331 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -UAAC-GU-- UGGC-GGU-G -UGU-AU--U AGGU-AUGCA A-GUC-GAGC 121 G--AU-UU-U GG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ---UUUC-UC (--GC----- ---------- ---------- 241 --------AA -)GA-GAAA- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- CAG|-AG--U AGCG-GCGC- 361 -A-CG-GC-U GAGU---AAC -AC-GUAGG- A-A--UCU-G C-CCUC---G -AGUG-G-GG 421 -GAC-AG-CU C--------- ------GC-- C(-GAAA-)G -GCGG-G--G UAAUACCCCC 481 AU-AUU---- ---------- ---------- ---------- ---CUC-(ac gac-----gc 541 aa----guug u)-GAG---- ---------- ----GAAA-- ---GAGCG-- ---------- 601 --(------- ---uaac--- ---)------ ---------| --UGCU--C- G--CUC---- 661 ----AAGG-- AUG---A-|G CCUGC----- -GG|----CC U--AUCA-G- GUA-G---UU 721 GG-UG-AG-( GU-AAC-UG) -C-UCACC-A A|-GCC-UA- UGA------- -----CGGGG 781 U-AG-C-UG| -G-UCU--(G -GGA)-GGAC ----GA-U-- CAG-C|C-AG -AGGAG-C-A 841 (UUGA-GA-U ACG)--GGCG -CCA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AC-C 901 AAG-AAUAUU G-CGCAAU-- GG-GC-(GAA A)-GCC-UGA CGCA|-GCGA CACC-GC-GU 961 G-U-AG-G-A U-GAA--G-G CU(--cu-cg --)GG-UCAU AAA--CUAC| UGUG-GC-GA 1021 --GG-GAA-- AA-A-UA--- ---------( ---------- ---------) ---------- 1081 ---------- -------A-A U-GA-UGGU- A-CCU-C-GC U-AG--AAAG ---------U 1141 -GGCUGCU-A ACUAU-GUG( CCA--GAAGC CUCGGUU-A) G-A-C-AUAG |-GCCA-C-- 1201 GAA-CGUUAU CC-GGUUUUA -CU-GGGC|G UAAA-AGGAC ACG-UAG-GC -G|-GU-UC- 1261 G-AU-AAG|U CGU---GCCU U-AAA-GC-C CG-UCG-C(- UC-A)A-CGA -CG-G-GA-- 1321 -UGGG-UGCG A-UAC-UGUU G-AGCUG-GA AUU-----UU C-UU-CAGGG GAA-U|GGAA 1381 CG-CUCUUU- GUA-GCG(-G UAAAA)-UGC -GU-UGAU-A AA-AAACGG- AACA-CCAA- 1441 -A-U-GC(-G AA-G)GCAA- -uucccukg- ---------- ---------- ---------G 1501 AAG--AU-UA UUGACG-CUG AG-G------ -------UU- C-GAAA-GC- AU-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AGAC)-CCC- ----UGUA-G UC----CAU- G-CC-CU--A 1621 AAC-GCAUGC C--UG-CU-- -------A|G -UC-Uu-ucu ccg-uu---- ---------- 1681 -(-ug-gg)- ---------- ---------- ---------- ---------- ---gag-agg 1741 cg-uaa---- --GC-(AAA- ---C)G-CG- UUAA-GCAGG C|C|G-CCU- G-GGGAUAAC 1801 GAU-C---(G CAA)---G-A UU-AAAACUC -AAACUGAAU AG-GCGGG-G -A-C-CC--A 1861 C-C--CA-AC GAGUGG-AAC A-U-GU-GGC -UCAAUU-CG -(AAACAA-A C)--CGAAAA 1921 A-CCUCA-CC AAG-GU-UUG ACA-UG|--- ---------a ---uauu--- -ggaa--uyu 1981 -cgg-c--(- GAAA-)-gcc -g-agcc--- cu-------- ---ccauaac --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)--guuau gg-------- ----ac---| agu-ac--ca |---C|A--G 2161 CU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |UC-C(-GUG G)-GGAGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd14 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 285 a 217 c 313 g 224 t 3337 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAU-GC-- UGGC-GGC-G -UGC-CU--U AAGC-AUGCA A-GUC-GAAC 121 G--GU--C-C -G-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- --------AU (--gu----- ---------- ---------- 241 --------ag -)GU------ ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- -CG|-GA--C AGUG-GCAG- 361 -A-CG-GG-U GAGU---AAC -GC-GUAGG- A-A--UCU-A C-CCCU---A -GGAU-U-CG 421 -CAU-AG-CC C--------- ------UC-- C(-GAAA-)G -GAGG-A--G UAAUACG-GA 481 AU-GGU---- ---------- ---------- ---------- ---CUC-(-- --------gu 541 aa-------- -)-GAG---- ---------- ----UAAA-- ---GGACU-- ---------- 601 --(------- ---uaac--- ---)------ ---------| --GGUC--C- G--CCA---- 661 ----AGGG-- AGG---A-|G CCUGC----- -GU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAA-AG) -C-CUACC-A A|-GGC-AA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-ACU--(G -AGA)-GGUC ----GA-U-- CAG-C|C-AC -AACUG-C-A 841 (CUGA-AA-C ACG)--GGCA -GUA-C-AUC -(UACG)--G AUG-GC-AG- C-A---AC-U 901 GGG-AAUAUU G-CGCAAU-- GG-AC-(GAA A)-GUC-UGA CGCA|-GCGA CGCC-GC-GU 961 G-A-AG-G-A A-GAA--G-G UC(--u--au g-)GA-UUGU AAA--CUUC| UUUU-GC-CA 1021 --AG-CCG-- UU-C-AC--- ---------( ---------- ---------) ---------- 1081 ---------- ---------- ---------- AGCUU-G-GA G-AA--UAAG ---------C 1141 -CUCUACU-A ACUAC-GUG( CCA--GAAGU CUCGGUA-A) U-A-C-GUAG |-GAGG-C-- 1201 AAG-CAUUAU CC-GGAUUCA -UU-GGGC|G UAAA-GUGU- GCG-UAG-GC -G|-GC-AU- 1261 A-GU-GUG|U CGU---AUUC U-AAA-GA-C CA-AGG-C(- UU-A)A-CCU -CG-G-AUC- 1321 -UGGA-UACG A-AAC-UGCU A-UGCUA-GA GGA-----UU G-UU-AGGGA UGC-U|AGAA 1381 CA-GUUAGU- GUG-GCA(-G UGAAA)-UGC -GU-UGAU-A UU-AACUGG- AAUA-CCGA- 1441 -A-G-GC(-G AA-G)GCAG- -GCAUCUG-- ---------- ---------- ---------G 1501 GAU--UU-UC CUGACG-CUG AG-G------ -------CA- C-GAAA-GC- UA-GGG-UA- 1561 GC-GAA-AC- -AG(AUUA-G AGAC)-CUG- ----UGUA-G UC----CUA- G-CC-GU--A 1621 AAC-G-AUGU C--CG-CU-- -------A|G -CU-au-cac -uu-cacaga gcgcacgagc 1681 u(-uu-ag)- ---------- ---------- --aguucgua cguuguguga -ggugg-ugg 1741 ug-uaa---- --GC-(UAA- ---C)G-CG- UUAA-GCGGA C|C|G-CCU- G-GGGAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AC CUGUGG-AGC G-U-GU-GGU -UUAAUU-CG -(AGACAA-A A)--CGAAAA 1921 A-CCUCA-CC AGG-GU-UUG ACA-UA|--- ---------c ---uauc--- -guacauuuc 1981 -cca-a--(- GAAA-)-cug -g-gaga--a au-------- ---cc----- --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)------- gg-------- ----au---| gau-ag--ua |---C|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP11-LGd8 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 276 a 234 c 322 g 216 t 3328 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GC-- UGGC-GGC-G -UGG-CU--A AGGC-AUGCA A-GUC-GAAC 121 G---A-AG-A -C-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- AUUGGug-ua (--gc----- ---------- ---------- 241 --------aa -)ua-caUUG A--------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- GUA|-CU--U AGUG-GCAA- 361 -A-CG-GG-A GCGU---AAC -AC-AUUGG- UAA--CGU-G C-CUCG---A -CUUC-G-CG 421 -AAC-AA-CU C--------- ------AG-- G(-GAAA-)C -UUGA-G--C UAAUACG-CG 481 AU-AUG---- ---------- ---------- ---------- ---GAU-(gg ggggcc--gc 541 agggcauucc c)-AUU---- ---------- ----GAAA-- ---GA----- ---------- 601 --(------- ---uuua--- ---)------ ---------| -----U--C- G--AAU---- 661 ----CGAG-- AGC---G-|A CCUAU----- -GU|----UC C--AUCA-G- CUA-G---UU 721 GG-CG-GG-( GU-AAC-GG) -C-CCACC-A A|-GGC-UA- UGA------- -----CG-GA 781 U-AC-C-AG| -G-CGC--(G -AGA)-GCGU ----GA-C-- CUG-G|C-UC -ACUGG-G-A 841 (CUGA-GA-C GCU)--GCCC -AGA-C-UCC -(UACG)--G GAG-GC-UG- C-A---GU-C 901 GCG-AAUAUU C-CACAAU-- GC-AC-(GAA A)-GUG-UGA CGGA|-GCGA CGCC-GC-GU 961 G-U-CG-G-A A-GAA--G-G CC(--cu-cg --)GG-UCGU AAA--CGAC| UUUU-AG-CA 1021 --GG-GAC-- GA-A-CC--- ---------( ---------- ---------) ---------- 1081 ---------- -------A-- U-GA-CGGU- A-CCU-G-CA G-AA--UAAG ---------A 1141 -GGUUGCU-A ACUCU-GUG( CCA--GCAGC AGCGGUA-A) U-A-C-AGAG |-ACCU-C-- 1201 AAG-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GCGU- UCG-UAG-GC -G|-GU-UU- 1261 U-GU-AAG|U CGU---UUGU U-AAA-UC-U UC-AGG-C(- UU-A)A-CCU -GG-A-GGC- 1321 -UGCA-GGUG A-UAC-UGCA A-GACUU-GA GUG-----UG G-GA-GAGGC AAG-C|GGAA 1381 UG-CCCGGU- GUA-GCG(-G UAGAA)-UGU -GU-UAAU-A UC-GGGUAG- AACA-CCAA- 1441 -A-G-GC(-G AA-G)GCAG- -CUUGCUG-- ---------- ---------- ---------G 1501 AAC--AC-AA CUGACG-CUC AGUG------ -------AA- C-GAAA-GC- GU-GGG-GA- 1561 GC-GAA-AG- -GG(AUUA-G AUAC)-CCC- ----UGUA-G UC----CAC- G-CU-GU--A 1621 AGC-U-AUGG C--UA-CU-- -------A|G -AU-UU-UGG -GA-GUU--- ---------- 1681 -(-uc-ga)- ---------- ---------- ---------- ------cccu -cucag-agu 1741 cgacgaaaca a-GC-(UAA- ---C)G-CG- UUAA-GUAGC C|C|G-CCU- G-GGAAGUAC 1801 GGU-C---(G CAA)---G-A CU-AAAACUC -AAA-GGAAU AG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGUGG-AUC A-U-GC-GGU -UUAAUU-CG -(AUGCAA-C G)--CGAGAA 1921 A-CUUCA-CC UGG-GC-UUG AAA-UA|--- ---------u ---agcu--- -gugg--gcg 1981 -auu-g--(- GAAA-)-caa -a-cgcc--- gu-------- ---cc----- --(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------c g-)------- ag-------- ----au---| cgc-ca--ug |---U|A--G 2161 GU-GC-UGCA UG|G-CUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPT76 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 82 a 72 c 104 g 67 t 4051 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACS-CAS-GC -G|-GA-UU- 1261 U-GU-AWG|U NGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)W-CCU -UG-G-GCY- 1321 -UGCA-UCCU A-GAC-UACA A-GUCUA-GA GAG-----CA G-GA-GARGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UNAAA)-UCC -GU-AAAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-U)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 KC-AAA-CA- -CG(AUKA-G ACAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 NAC-N-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-UM-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(YAA- ---C)G-CG- UUAA~~~~~~ ~|~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~(~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~)~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~)~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~~ 2161 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ |~~~~(~~~~ ~)~~~~~~~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPT69 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 87 a 70 c 113 g 70 t 4036 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-G-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUCUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-G~~~~ ~|~|~~~~~~ ~~~~~~~~~~ 1801 ~~~~~~~~(~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~)~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~)~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~~ 2161 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ |~~~~(~~~~ ~)~~~~~~~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPS54A 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 101 a 81 c 123 g 81 t 3990 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) U-A-C-GUAG |-GGUG-C-- 1201 GAG-CGUUAA UC-GGAUUUA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUCUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-UGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU ~~~~~~~~~~ ~~~~~~~~~~ 1861 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~~~ ~)~~~~~~~~ 1921 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~|~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~----~~~ 1981 ~~~~~~~~~- ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~--- ---~~~~~~~ 2041 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2101 ~~~~~~~~~~ ~~)~------ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ -~~~~|~~~~ 2161 ~~~~~~~~~~ ~~|~~~~~~~ ~~~~~~~|~~ ~~~~~~~~~~ |~~~~(~~~~ ~)~~~~~~~~ 2221 ~~~~~(~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ |~~~~~~~~~ 2281 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(---~~ ~~~~~~--)~ 2341 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2401 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2461 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2521 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2581 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2641 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ 2701 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~(~~~~~ ~~)~~~~~~~ ~~~~~~~~~~ 2761 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2821 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~(~ 2881 ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 2941 ~~~~~~~~~~ (~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3001 ~~~~~~~(~~ ~~~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3061 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~(~~~~ ~~~~~~~~~- 3181 ---------- ---------- ---------- ------~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3241 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPS107 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 239 a 233 c 296 g 191 t 3417 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUCUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGA-GGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C A)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- ---------c ---augu--- -gaaa--gcu 1981 -cga-a--(- GAAA-)-cuc -g-agcc--- cc-------- ---cauaggg --(guu---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------ac a-)--cccua ug-------- ----gc---| aca-ug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-G-(UUAA -GU)-CCGUG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-u aa-uag---- ---------- ---------- ----(gc-uu ---cg-gc)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----cua|u 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -GA--CAAUG CGU-U-G-C- GA-ACC-A(G 2881 -UAA)UGGG- ---------- GA-GCUAA-U CGCAA-AAAA -CC-G-ACC- CCAGUACGGA 2941 U-UGAGGGU- (UGCAAC-U- C)-ACCCUCA -UGAAGC-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGAUG- AAUGC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGC- GU-GC-ACCC -GAA-G-Ugg 3121 c-u------- ---------- ---------- ---------- -----(---- -cggug---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- A-GU-CA-CG A-AGGU-GUG CGU-GA-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPB60 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 210 a 212 c 260 g 167 t 3527 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) ~~~~~~~~~~ |~~~~~~~~~ 1201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~|~~~~~~~ 1261 ~~~~~~~~|~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1321 ~~~~~~~~~~ ~~~~~~UACA A-GUCUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGA-GGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C A)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- ---------c ---augu--- -gaaa--gcu 1981 -cga-a--(- GAAA-)-cuc -g-agcc--- cc-------- ---cauaggg --(guu---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------ac a-)--cccua ug-------- ----gc---| aca-ug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-G-(UUAA -GU)-CCGUG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-u aa-uag---- ---------- ---------- ----(gc-uu ---cg-gc)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----cua|u 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -GA--CAAUG CGU-U-G-C- GA-ACC-A(G 2881 -UAA)UGGG- ---------- GA-GCUAA-U CGCAA-AAAA -CC-G-ACC- CCAGUACGGA 2941 U-UGAGGGU- (UGCAAC-U- C)-ACCCUCA -UGAAGC-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGAUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGC- GU-GC-ACCC -GAA-G-Ugg 3121 c-u------- ---------- ---------- ---------- -----(---- -cggug---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- A-GU-CA-CG A-AGGU-GUG CGU-GA-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPS51 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 241 a 231 c 292 g 190 t 3422 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CRUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U AGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUMUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-MU CUDACG-CUC AG-G------ -------UA- C-GAAA-GC- RU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGA-GGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C A)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- ---------c ---augu--- -gaaa--gcu 1981 -cga-a--(- GAAA-)-cuc -g-agcc--- cc-------- ---cauaggg --(guu---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------ac a-)--cccua ug-------- ----gc---| aca-ug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-G-(UUAA -GU)-CCGUG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-u aa-uag---- ---------- ---------- ----(gc-uu ---cg-gc)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----cua|u 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -GA--CAAUG CGU-U-G-C- GA-ACC-A(G 2881 -UAA)UGGG- ---------- GA-GCUAA-U CGCAA-AAAA -CC-G-ACC- CCAGUACGGA 2941 U-UGAGGGU- (UGCAAC-U- C)-ACCCUCA -UGAAGC-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGAUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGC- GU-GC-ACCC -GAA-G-Ugg 3121 c-u------- ---------- ---------- ---------- -----(---- -cggug---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- A-GU-CA-CG A-AGGU-GUG CGU-GA-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPS148 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 236 a 234 c 296 g 191 t 3419 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 CAG-CGUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUCUA-GA GAG-----CA C-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-ACAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(AWA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGA-GGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C A)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- ---------c ---augu--- -gaaa--gcu 1981 -cga-g--(- GAAA-)-cuc -g-agcc--- -c-------- ---cauaggg --(guu---- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 --------ac a-)--cccua ug-------- ----gc---| aca-ug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-G-(UUAA -GU)-CCGUG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-u aa-uag---- ---------- ---------- ----(gc-uu ---cg-gc)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----cua|u 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -GA--CAAUG CGU-U-G-C- GA-ACC-G(G 2881 -UAA)UGGG- ---------- GA-GCUAA-U CGCAG-AAAA -CC-G-ACC- CCAGUACGGA 2941 U-UGAGGGU- (UGCAAC-U- C)-ACCCUCA -UGAAGC-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGAUG- AAUGC-GUU- CCC-GGG-UU UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGC- GU-GC-ACCC -GAA-G-Ugg 3121 c-u------- ---------- ---------- ---------- -----(---- -cggug---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- A-GU-CA-CG A-AGGU-GUG CGU-GA-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS OP5-OPS163 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 240 a 233 c 292 g 191 t 3420 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 121 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 181 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ (~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 241 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 301 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ 361 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~~)~ ~~~~~~~~~~ ~~~~~~~~~~ 481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~(~~ ~~~~~~~~~~ 541 ~~~~~~~~~~ ~)~~~~~~~~ ~~~~~~~~~~ ~~-~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 601 ~~(~~~~~~~ ~~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ ~~~~~~~~~~ 661 ~~~~~~~~~~ ~~~~~~~~|~ ~~~~~~~~~~ ~~~|~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 721 ~~~~~~~~~( ~~~~~~~~~) ~~~~~~~~~~ ~|~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 781 ~~~~~~~~~| ~~~~~~~~(~ ~~~~)~~~~~ ~~~~~~~~~~ ~~~~~|~~~~ ~~~~~~~~~~ 841 (~~~~~~~~~ ~~~)~~~~~~ ~~~~~~~~~~ ~(~~~~)~~~ ~~~~~~~~~~ ~~~~~~~~~~ 901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~~~~ ~~~~|~~~~~ ~~~~~~~~~~ 961 ~~~~~~~~~~ ~~~~~~~~~~ ~~(~~~~~~~ ~~)~~~~~~~ ~~~~~~~~~| ~~~~~~~~~~ 1021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~---) ~~~~~~~~~~ 1081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 1141 ~~~~~~~~~~ ~~~~~~~~~( ~~~~~~~~~~ ~~~~~~~~~) A-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU CC-GGAAUCA -CU-GGGU|G UAAA-GGGU- ACG-CAG-GC -G|-GA-UU- 1261 U-GU-AAG|U UGG---AUGU A-AAA-AC-U CA-GGG-C(- UC-A)A-CCU -UG-A-GCU- 1321 -UGCA-UCCA A-GAC-UACA A-GUCUA-GA GAG-----CA G-GA-GAGGG GAG-U|GGAA 1381 UU-CCCGGU- GUA-GGG(-G UAAAA)-UCC -GU-AGAU-A UC-GGGAGG- AACA-CCAA- 1441 -U-G-GC(-G AA-G)GCAG- -CUCCCUG-- ---------- ---------- ---------G 1501 CCU--GU-CU CUGACG-CUC AG-G------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG G--UG-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-Ua-au)- ---------- ---------- ---------- -------ucc -cucag-ugc 1741 cg--ua---- --GC-(UAA- ---C)G-CG- UUAA-GCACC C|C|A-CCU- G-GGGAGUAC 1801 GGC-C---(G CAA)---G-G UU-GAAACUC -AAA-GGAAU UG-ACGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGCGA-RGC A-U-GU-GGU -UUAAUU-CG -(AUGCUA-C A)--CGAAGA 1921 A-CCUCA-CC UGG-GC-UUG ACA-UG|--- ---------c ---augu--- -gaaa--gcu 1981 -cga-a--(- GAAA-)-cuc -g-agcc--- cc-------- ---cauaggg u-(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a c-)-acccua ug-------- ----gc---| aca-ug--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 CG-G-(UUAA -GU)-CCGUG AA-------- CGAG-C--GC AACCC-CU-G |-CC--CUU- 2281 AG--UUGC-u aa-uag---- ---------- ---------- ----(gc-uu ---cg-gc)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----cua|u 2701 G-CA-CU-C- U-AAG-GG-G A-CU-G-CCA --GC(-GA-U AA)-GCU-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C CUUAU-G-CC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -GA--CAAUG CGU-U-G-C- GA-ACC-A(G 2881 -UAA)UGG-- ---------- GA-GCUAA-U CGCAA-AAAA -CC-G-ACC- CCAGUACGGA 2941 U-UGAGGGU- (UGCAAC-U- C)-ACCCUCA -UGAAGC-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-CGG-(UC -AGCUAU)-A CGG-CGAUG- AAUAC-GUU- CCC-GGG-UC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCG A--GU-UGC- GU-GC-ACCC -GAA-G-Ugg 3121 c-u------- ---------- ---------- ---------- -----(---- -cggug---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------- A-GU-CA-CG A-AGGU-GUG CGU-GA-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS WCHB1-02 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 392 a 331 c 427 g 312 t 2914 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAC -UAAC-GC-- UGGC-AGU-G -UGC-CU--U ACAC-AUGCA A-GUC-GGAC 121 G--G------ ---------- ---------- ---------- ---------- ---------- 181 ---------- ---------- ----GGG-AC (--uu----- ---------- ---------- 241 --------cg -)GU-CCC-- ---------- ---------- ---------- ---------- 301 ---------- ---------- ---------- ---------- ---|--U--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAU -GG-AUAGA- UAA--UCU-A C-CGGG---A -AGAU-G-GG 421 -GAU-AC-CC C--------- ------CU-- C(-GAAA-)G -AGGG-A--A CAAUACC-CA 481 GU-ACG---- ---------- ---------- ---------- ---CUC-(c- --------gc 541 aa-------- g)-GAG---- ---------- ----GAAA-- ---GGUGGU- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCCAC--C- G--CUU---- 661 ----UCCG-- ACG---A-|G UCUAU----- -CU|----CC U--AUCA-G- CUA-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-UA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(G -AGA)-GGAU ----GA-U-- CAG-C|C-AC -ACUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUUUU G-GGCAAU-- GA-GC-(GAA A)-GCU-UGA CCCA|-GCGA CACU-GC-GU 961 G-G-GC-G-A U-GUA--G-A UC(--UU-UG --)GA-UUGU AAA--GCCC| UUUU-AU-AG 1021 --AA-GAG-- UA-A-gg-ag --aug-guu( ag----gaaa -------ug) agcu-gu-cu 1081 ---------- -------C-U U-GC-AAGU- A-UUU-U-AU G-AA--UAAG ---------C 1141 -CCCAGCC-A ACUAC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 AAG-CGUUGU CC-GGAAUUA -CU-GGGU|G UAAA-GGGU- GUG-CAG-GC -G|-UC-CU- 1261 G-UU-AAG|U UGG---UUGU G-AAA-AC-C CG-GAG-C(- UC-A)A-CUC -CG-G-AAC- 1321 -UGCA-GCCA A-UAC-UGAU A-GGAUC-GA GGG-----UA U-GA-GAAGG AAG-C|GGAA 1381 UU-CUCGGU- GUA-GCG(-G UGAAA)-UGC -GU-AGAU-A UC-GAGAGG- AACA-CCUG- 1441 -C-G-GC(-G AA-A)GCGG- -CUUCCUA-- ---------- ---------- ---------A 1501 CAU--AC-UU CUGACG-CUC AU-A------ -------CA- C-GAAA-GC- UA-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CUA- G-CC-AU--A 1621 AAC-G-AUGA A--UA-CU-- -------A|G -GU-GU-UGG -AG-Ga---- ---------- 1681 -(-uucac)- ---------- ---------- ---------- -------ucc -uucag-cgu 1741 cG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUU C|C|A-CCU- G-GAAAGUAC 1801 GGU-C---(G CAA)---G-G CU-GAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGA-GGC A-U-GU-GGU -UUAAUU-CG -(AGGCUA-C A)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------u ---uaau--- -guaa--ggu 1981 -cua-a--(- GAAA-)-cua -g-accc--- cc-------- ---cugugcc --(gc----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------a a-)--gguac ag-------- ----gc---| auu-uu--cA |---C|A--G 2161 GU-GG-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GC-C(-GUG A)-GGUGU-A 2221 AG-G-(UUAA -GU)-CCUUG AA-------- CGAG-C--GC AACCC-AC-U |-UU--GUU- 2281 AU--UUGC-U AG-gga---- ---------- ---------- ----(ca-gu ---ga-ug)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- -----ucc|G 2701 GCUA-CU-A- U-AAC-AA-U A-CC-G-CUG --GC(-GA-C GA)-GCC-A- -GAGG-A-AG 2761 G-UG-UGG-A UG-ACG--UC -A-AAUC-AU CAC-G-CC-C CUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -UA--CAAUG AGU-U-G-C- AA-UGC-A(G 2881 -UAA)UGCG- ---------- GA-GCUAA-U CUCC--AAAG -CC-G-GCC- CCAGUACAGA 2941 U-CGAGGGU- (UGAAAC-U- C)-ACCCUCG -UGAAGA-UG -GAGU-UGC- -UAGUA-AAC 3001 GC-AAG-(UC -AGCCAU)-A UUG-CGUUG- AAUAC-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-ACA--- --CCA-CCCA A--GU-UGG- UU-GC-ACCC -GAA-a-aca 3121 cauac-c-cu -aa-cc---- ---------- ---------- -----(---- -guaa----- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GGAAG-G-G C-GU-GU-UG A-AGGU-GUG GUC-AG-UG- AGG-AGGG-U 3301 G~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS WCHB1-03 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 369 a 356 c 446 g 298 t 2907 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~AAU -GAAC-GC-- UGGC-GGC-G -UGC-UU--U ACAC-AUGCA A-GUC-GAGC 121 G--GA-GU-C AG-------- ---------- ---------- ---------- ---------- 181 ---------- ---------- UUCCaag-gg (--gc----- ---------- ---------- 241 --------aa -)cc-cgagG GAC------- ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- GGU|-UC--- AGCG-GCAA- 361 -A-CG-GG-U GAGU---AAU -GG-ACAGG- UAA--CGU-A C-CCCC---A -AGAC-G-UG 421 -GAU-AG-CU C--------- ------AU-- C(-GAAA-)G -AUGA-G--A UAAUACG-CG 481 AU-AAU---- ---------- ---------- ---------- --gUUG-(ca gggc----ga 541 ug---gcucu g)-CAAa--- ---------- ----GAAA-- ---GCGGGC- ---------- 601 --(------- ---GCAA--- ---)------ ---------| -GCUCG--C- G--CUU---- 661 ----CCGG-- AUC---G-|G CCUGU----- -CU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-GG-( GU-AAU-AG) -C-CUACC-A A|-GGC-GA- UGA------- -----CG-GG 781 U-AG-C-UG| -G-UCU--(U -AGA)-GGAU ----GG-U-- CAG-C|C-AC -AUUGG-A-A 841 (CUGC-GA-U ACG)--GUCC -AGA-C-UCC -(UACG)--G GAG-GC-AG- C-A---GU-G 901 GGG-AAUCAU G-GUCAAU-- GG-GC-(GAA A)-GCC-UGA ACCU|-GCGA CGCC-GC-GU 961 G-A-GU-G-A U-GAA--G-G UC(--GU-AA --)GA-UCGU AAA--ACUC| UUUU-CA-GG 1021 --GA-ACU-- UA-A-AG-cu --ccg-guu( cua---aca- ------uag) -ccu-gg-AG 1081 ---------- ---------- U-CU-GACC- A-UCC-C-UG G-AA--UAAG ---------C 1141 -CccAGCC-A ACUAC-GUG( CCA--GCAGC UGCGGUA-A) U-A-C-GUAG |-GGGG-C-- 1201 GAG-CGUUAU UC-GGAAUUA -CU-GGGU|G UAAA-GGGU- AUG-UAG-GC -G|-GC-CU- 1261 C-AC-AAG|U CGC---GUGU C-AAA-GU-C CA-GCG-C(- UC-A)A-CGC -UG-G-GUU- 1321 -CGCA-CGCG A-UAC-UGUC A-GGCUU-GA GGA-----CU G-GA-GAGGU GAG-C|GGAA 1381 UU-CCCGGU- GUA-GUG(-G UAAAA)-UAC -GU-AGAU-A UC-GGGAGG- AACA-CCAG- 1441 -C-G-GC(-G UA-G)GCGG- -CUCACUA-- ---------- ---------- ---------G 1501 ACA--GU-UU CUGACG-CUA AG-A------ -------UA- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-CA- -GG(AUUA-G AUAC)-CCU- ----GGUA-G UC----CAC- G-CC-CU--A 1621 AAC-G-AUGG A--UA-CU-- -------U|G -GU-GU-UGG -GG-GG---- ---------- 1681 -(-UU--a)- ---------- ---------- ---------- --------cc -uucag-ugc 1741 cG--GA---- --GC-(UAA- ---C)G-CG- UUAA-GUAUC C|C|A-CCU- G-GGGACUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-GGAAU UG-ACGGG-G -G-C-CC--G 1861 C-A--CA-AG CAGCGA-GGU A-U-GU-GGU -UUAAUU-CG -(ACGCUA-C G)--CGAAGA 1921 A-CCUUA-CC UGG-GC-UUG ACA-UG|--- ---------C ---Uuga--- -gaaa--gag 1981 -cca-a--(- GAAA-)-cug -g-cucc--- cc-------- ---caugacc --(GC----- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------A A-)--gguca ug-------- ----gc---| uca-uc--ca |---C|A--G 2161 GU-GC-UGCA UG|G-UUG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 AG-G-(UUAA -GU)-CCUUG AA-------- CGAG-C--GC AACCC-CU-U |-UU--GCU- 2281 AG--UUGC-U AA-CCA---- ---------- ---------- ----(---GU ---AAU--)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- ------GG|C 2701 G-CA-CC-C- U-AGC-GA-U A-CU-G-CCA --GC(-UA-A AA)-GUU-G- -GAGG-A-AG 2761 G-AG-GGG-A UG-ACG--UC -A-AAUC-CU CAU-G-GC-C UUUAU-G-UC -CA--GGGC- 2821 U-ACA-CA-C AUG--CGACA AUGGU-C-GG -UA--CAACG GGU-C-G-C- AA-CAC-C(G 2881 -CGA)GGUG- ---------- AA-GCCAA-U CUCUA-AAAA -CC-G-ACC- UCAGUUCAGA 2941 U-UGCAGGC- (UGCAAU-U- C)-GCCCACA -UGAAGA-UG -GAGU-UGC- -UAGUA-ACC 3001 GC-GGG-(UC -AGCUAC)-a CCG-CGGUG- AAUAU-GUU- CCC-GGG-CC UUGUA----C 3061 ACACCGCCC- GUC-AAA--- --CCA-CCCG A--GU-CUG- UU-GC-ACCC -GAA-G-Uug 3121 c-c-c----- ---------- ---------- ---------- -----(---- -guu------ 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- ---------G G-GU-GA-CG A-AGGU-GUG GCC-GG-UA- AGG-AGGG-U 3301 U~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS WCHB1-06 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 382 a 302 c 433 g 353 t 2906 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GU-- UGGC-UGU-G -UGC-CU--A AGGU-AUGCA A-GUC-GGAC 121 G--AU-CC-C UU-------- ---------- ---------- ---------- ---------- 181 ---------- ----UGAAuu acuugag-ac (--uu----- ---------- ---------- 241 --------cg -)gu-ugauu guuuuucUUU U--------- ---------- ---------- 301 ---------- ---------- ---------- --------U- GGG|-AU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGA- UUA--UCU-G C-CCUG---A -AGAC-G-GG 421 -AAU-AG-CU C--------- ------AU-- C(-GAAA-)G -AUGG-G--G UAAUACU-CG 481 AU-AGC---- ---------- ---------- ---------- ---CUU-(ac auucu---uu 541 u---aguuug u)-AAG---- ---------- ----UAAA-- ---GC----- ---------- 601 --(------- ---uuuu--- ---)------ ---------| -----G--C- G--CUU---- 661 ----CAGG-- AGG---A-|G UCCGC----- -AU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAU-GG) -C-UCACC-A A|-GGC-GA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-CGU--(G -AGA)-GCGC ----GG-U-- CAG-C|C-AC CAUCGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-U 901 AGG-AAUCUU G-CGCAAU-- GG-GG-(GCA A)-CCC-UGA CGCA|-GCGA CACA-GU-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--cucc| UUUU-AU-GA 1021 --GG-GAA-- GA-AUAG--- ---------( ---------- ---------) ---------- 1081 ---------- ---------A u-ga-cggu- a-ccu-C-AU G-AA--UAAG ---------C 1141 -ACCUGCU-A ACUAC-GUG( CCA--GAAGC AUCGGUG-A) U-G-C-GUAG |-GGUG-C-- 1201 GAA-CGUUAU CC-GGAUUUA -UU-GGGC|G UAAA-GAGAA GCG-UAG-GU -G|-UU-UU- 1261 U-GU-AAG|U CUU---UAGU U-AAA-UA-C CA-CGG-C(- UC-A)A-CCG -UG-G-AGA- 1321 -AGCU-UUGG A-AAC-UGCA A-AAAUU-GA GAC-----AG G-AA-UGGGC GAA-U|GGAA 1381 UU-CCCAGU- GGA-GCG(-G UGAAA)-UGC -GU-UGAU-A UU-GGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCGCUG-- ---------- ---------- ---------G 1501 UCC--UU-GU CUGACA-CUA AG-G------ -------CU- C-GAAA-GC- GU-GGG-GA- 1561 GC-AAA-AC- -GG(AUUA-G AUAC)-CCG- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-A-AUGG A--CG-CU-- -------A|G -GU-GU-Ucg -gu-acaacu acuuaaucc- 1681 -(-uu-cg)- ---------- ---------- ----ggauug aauggaagua -uugag-uaC 1741 UG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC G-C-GU-GGU -UUAAUU-CG -(ACGGCA-A U)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG AAA-UG|--- ---------u ---aucu--- -gcau--gcc 1981 -cca-u--(- GAAA-)-gug -g-ggag--- gc-------- ---uu----- --(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------u g-)------- aa-------- ----gg---| uga-ua--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-A 2221 GG-G-(UUAA -GU)-CCCGA AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCA- 2281 UG--UUAC-- ---------- ---------- ---------- ----(---aa ---gu---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 g-u-----c- u-ugg-ga-a a-cc-g-CCU --CG(GUA-A AA)-CGA-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -U-GGUC-CG CAU-A-GC-C CUUAU-G-UC -CU--GGGC- 2821 U-ACA-CA-C ACG--CUACA AUGGC-C-AA -UA--CAAUA GGA-A-G-C- CA-AAU-C(G 2881 -UAA)GAUG- ---------- GA-GCUGA-U CCCU--AAAG -UU-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGAAAC-U- C)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-GUC 3001 GU-GAA-(UC -AGCCAU)-g uca-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UAGG A--GU-AGG- UG-AU-ACCC -GAA-G-gug 3121 u-u-c-u-gu ----cu---- ---------- ---------- -----(---- -cuugu---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -AG-AU-G-G A-AU-GA-CG A-AGGU-AAC GCU-UA-UG- ACU-GGGG-U 3301 U~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS WCHB1-15 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 390 a 306 c 429 g 349 t 2902 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~GAU -GAAC-GU-- UGGC-UGU-G -UGC-CU--A AGGU-AUGCA A-GUC-GAAC 121 G--AU-UC-U UU-------- ---------- ---------- ---------- ---------- 181 ---------- ---AUGAAAu uucugaa-ac (--uu----- ---------- ---------- 241 --------cg -)gu-ugaug auuuUUCGCU ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- AGA|-AU--- AGUG-GCAA- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGA- UAA--UCU-G C-CUCA---A -AGUC-G-UG 421 -AAC-AG-CU C--------- ------GC-- C(-GAAA-)G -GCGG-G--G UAAUACU-CG 481 AU-AGU---- ---------- ---------- ---------- ---CUU-(gu ucuuuca-ua 541 a-uguuugaa c)-AAG---- ---------- ----UAAA-- ---GC----- ---------- 601 --(------- ---ucag--- ---)------ ---------| -----G--C- G--CUU---- 661 ----UGAG-- AUG---A-|G UCCGC----- -AU|----CC U--AUCA-G- CUU-G---UU 721 GG-UG-AG-( GU-AAA-AG) -C-UCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-CGU--(G -AGA)-GCGC ----GG-U-- CAG-C|C-AC -CAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-U 901 AGG-AAUCUU G-CACAAU-- GG-GG-(GCA A)-CCC-UGA UGCA|-GCGA CACA-GC-GU 961 G-G-AG-G-A U-GAA--G-G UC(--UU-CG --)GA-UUGU AAA--cucc| UUUU-AU-AU 1021 --GG-GAC-- GA-AUAG--- ---------( ---------- ---------) ---------- 1081 ---------- ---------A U-GA-CGGU- A-CCA-U-AU G-AA--UAAG ---------U 1141 -ACCUGCU-A ACUAC-GUG( CCA--GAAGC AUCGGUG-A) U-G-C-GUAG |-GGUA-C-- 1201 GAA-CGUUAU CC-GGAUUAA -UU-GGGC|G UAUA-GAGAA GCG-UAG-GC -G|-UU-UU- 1261 U-GU-UAG|U CUU---UAGU U-AAA-UA-C CA-CGG-C(- CU-A)A-CCG -UG-G-GAA- 1321 -AGCU-AUAG A-UAC-UGCA G-AAAUU-GA GAC-----AG G-AA-UGGGC GAA-U|GGAA 1381 UU-CCCAGU- GGA-GCA(-G UGAAA)-UGC -GU-UGAU-A UU-GGGAGG- AACA-UCAU- 1441 -U-G-GC(-G AA-G)GCGA- -UUCGCUG-- ---------- ---------- ---------G 1501 UCC--UU-GU CUGACG-CUA AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-AC- -GG(AUUA-G AUAC)-CCG- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-A-AUGG A--UG-CU-- -------A|G -GU-GU-Uug -gu-acaacu accuaaucc- 1681 -(-uu-cg)- ---------- ---------- ----ggauug gauggaagua -uugag-ugc 1741 cG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCAUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CGGAGG-AGC G-C-GU-GGU -UUAAUU-CG -(ACGGCA-A U)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG AAA-UG|--- ---------u ---accu--- -gcau--gcc 1981 -ccu-a--(- GAAA-)-uag -g-ggag--- gc-------- ---uu----- --(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------c g-)------- aa-------- ----gg---| uga-ua--ca |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGA AA-------- CGAG-C--GC AACCC-CU-A |-UC--CUA- 2281 UG--UUAC-- ---------- ---------- ---------- ----(---aa ---gu---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 g-u-----c- u-uag-ga-a a-cu-g-CCU --CG(GUA-A AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -U-GGUC-CG CAU-A-GC-C CUUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGC-C-GA -UA--CAAUG GGA-A-G-C- CA-AAU-C(G 2881 -UAA)GAUG- ---------- GA-GCAAA-U CCUAU-AAAG -UC-G-GUC- UCAGUUCGGA 2941 U-UGAGGUC- (UGAAAC-U- C)-GACCUCA -UGAAGU-UG -GAUU-CGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCCAU)-g cca-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGA A--GU-AGG- UG-AU-ACCC -GAA-G-gug 3121 u-u-c-c-gc ----uc---- ---------- ---------- -----(---- -cuugu---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GA-GU-G-G G-AU-GA-CG A-AGGU-AAC GCU-UA-UG- ACU-GGGG-U 3301 U~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ // LOCUS WCHB1-01 4376 bp RNA RNA 09-JAN-191 DEFINITION . ACCESSION No information KEYWORDS No information. SOURCE No information. ORGANISM No information. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information STANDARD No information BASE COUNT 394 a 305 c 424 g 349 t 2904 others ORIGIN 1 |~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~(~~~ ~)~~~~~|~~ 61 ~~~~~~~AAU -GAAC-GU-- UGGC-UGU-G -UGC-CU--A AGGU-AUGCA A-AUC-GAAC 121 G--AU-CC-C CU-------- ---------- ---------- ---------- ---------- 181 ---------- ----UGAGAu uucugaa-ac (--uu----- ---------- ---------- 241 --------cg -)gu-ugaug auuucUCGCU ---------- ---------- ---------- 301 ---------- ---------- ---------- --------U- GGG|-AU--- AGUG-GUAA- 361 -A-CG-GG-U GAGU---AAC -AU-GUGGA- UAA--UCU-C C-CUCA---A -AGUC-A-AG 421 -GAC-AG-CU C--------- ------GC-- C(-GAAA-)G -GCGG-G--G UAAUACu-ug 481 au-AGU---- ---------- ---------- ---------- ---CUU-(ac agaauc--au 541 aaaguuuuug u)-AUG---- ---------- ----UAAA-- ---AC----- ---------- 601 --(------- ---UCCG--- ---)------ ---------| -----G--U- G--CUU---- 661 ----UGAG-- AUG---A-|G UCCGC----- -AU|----CC U--AUCA-G- CUA-U---UU 721 GG-UG-AG-( GU-AAU-AG) -C-UCACC-A A|-GGC-UA- AGA------- -----CG-GG 781 U-AG-C-UG| -G-CGU--(G -AGA)-GCGC ----GG-U-- CAG-C|C-AC -CAUGG-A-A 841 (CUGA-GA-C ACG)--GUCC -AUA-C-UCC -(UACG)--G GAG-GC-AG- C-A---AU-U 901 AGG-AAUAUU A-CACAAU-- GG-GG-(GCA A)-CCC-UGA UGUA|-GCGA CACA-GC-GU 961 G-G-AG-G-A A-GAA--G-G UC(--UU-AG --)GA-UCGU AAA--cucc| UUUU-AU-AU 1021 --GG-GAA-- GA-AUAA--- ---------( ---------- ---------) ---------- 1081 ---------- ---------A U-GA-CUGU- A-CCA-U-AU G-AA--UAAG ---------U 1141 -ACCUGCU-A ACUAC-GUG( CCA--GAAGC AUCGGUG-A) U-G-C-GUAG |-GGUA-C-- 1201 AAA-CGUUAU UC-GGAUUUA -UU-GGGC|G UAAA-GAGAA GCG-UAG-GC -G|-UU-CU- 1261 U-GC-AAG|U CUU---GAGU U-AAA-GA-C CA-CGG-C(- UC-A)A-CCG -UG-G-AAG- 1321 -AGCU-UUCG A-UAC-UACA A-GAAUA-GA GAC-----AU G-AA-UGGGC GAA-U|GGAA 1381 UU-CCGAGU- GGA-GUG(-G UGAAA)-UAC -GU-UGAU-A UU-CGGAGG- AACA-UCAG- 1441 -U-G-GC(-G AA-G)GCGA- -UUCGCUG-- ---------- ---------- ---------G 1501 UCA--UU-GU CCGACG-CUA AG-G------ -------CU- C-GAAA-GC- GU-GGG-UA- 1561 GC-AAA-AC- -GG(AUUA-G AUAC)-CCG- ----UGUA-G UC----CAC- G-CC-GU--A 1621 AAC-U-AUGG A--CG-CU-- -------A|G -GU-GU-Uug -gu-auaacu auuuaaucc- 1681 -(-uu-cg)- ---------- ---------- ----ggauuu uauggaagua -uugag-ugc 1741 cG--CA---- --GC-(UAA- ---C)G-CG- UUAA-GCGUC C|C|G-CCU- G-GGAAGUAC 1801 GGC-C---(G CAA)---G-G CU-AAAACUC -AAA-UGAAU UG-GCGGG-G -A-C-CC--G 1861 C-A--CA-AG CAGAGG-AGC G-C-GU-GGU -UUAAUU-CG -(AUGGCA-A U)--CGAAGA 1921 A-CCUUA-CC AGG-GU-UUG AAA-UA|--- ---------u ---accu--- -gcau--ccc 1981 -cuu-g--(- GAAA-)-caa -g-ggag--- uc-------- ---cu----- --(u------ 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------c g-)------- ag-------- ----gg---| ugg-ua--ua |---C|A--G 2161 GU-GC-UGCA UG|G-CCG-- UCG-UCA|-G C-U---CG-U |GU-C(-GUG A)-GAUGU-U 2221 GG-G-(UUAA -GU)-CCCGA AA-------- CGAG-C--GC AACCC-CU-A |-UC--CCA- 2281 UG--UUAC-- ---------- ---------- ---------- ----(---aa ---gu---)- 2341 ---------- ---------- ---------- ---------- ---------- ---------- 2401 ---------- ---------- ---------- ---------- ---------- ---------- 2461 ---------- ---------- ---------- ---------- ---------- ---------- 2521 ---------- ---------- ---------- ---------- ---------- ---------- 2581 ---------- ---------- ---------- ---------- ---------- ---------- 2641 ---------- ---------- ---------- ---------- ---------- --------|- 2701 g-u-----c- u-ugg-ga-a a-cu-g-CCU --CG(GUA-A AA)-CGG-G- -GAGG-A-AG 2761 G-UG-GGG-A UG-ACG--UC -U-GGUC-CG CAU-A-GC-C CUUAU-G-UC -CU--GGGC- 2821 G-ACA-CA-C GCG--CUACA AUGGU-C-GG -UA--CAAUA GGC-A-G-C- CA-AGC-C(G 2881 -UAA)GGCG- ---------- GA-GCUAA-U CCUA--AAAG -CC-G-AUC- UCAGUUCGGA 2941 U-CGAGGUC- (UGAAAC-U- C)-GACCUCG -UGAAGU-UG -GAUU-UGC- -UAGUA-AUC 3001 GU-GGA-(UC -AGCCAU)-G CCA-CGGUG- AAUAC-GUU- CUC-GGG-UC UUGCA----C 3061 ACACCGCCC- GUC-AAG--- --CCA-UGGG A--GU-AGG- UC-GU-ACCC -GAA-G-gug 3121 u-u-c-u-gu ----uc---- ---------- ---------- -----(---- -uuuag---- 3181 ---------- ---------- ---------- -------)-- ---------- ---------- 3241 ---------- -GA-AU-G-G A-AU-GA-CG A-AGGU-AAG GCU-UA-UG- ACU-GGGG-U 3301 U~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~(~~~~~)~~ ~~~~~~~~~~ ~~~~~~~~~~ 3361 ~~~~|~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~|||||~~~~ ~~~~~~~~~~ 3421 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3481 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3541 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3601 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3661 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3721 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3781 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3841 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3901 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 3961 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4021 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4081 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4141 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4201 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4261 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ 4321 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~ //